RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6322
(128 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 126 bits (320), Expect = 1e-37
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G R+ +A AL+ NP L ILDEPT GLD + ++ + L + ++ G T+++++H + E
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE 208
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEH 118
LC I L+ G ++ + L R ++E F ++ + E+
Sbjct: 209 VEFLC-----------DRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 94.9 bits (237), Expect = 1e-25
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
G RR LA LL N ++ +LD+P V +D + ++E+ E G ++ + +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEE 91
C+ + + ++
Sbjct: 196 Y---------CDV------NENLHKYSTKIDK 212
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 88.4 bits (220), Expect = 1e-22
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI--TTHYI 58
G+++R +A AL+ P +LILDEP GLD + +S+ L ++++ T+ + TH+I
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223
Query: 59 EEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAF 109
EE +K I L+++G + + + ++ N + F
Sbjct: 224 EEITANFSK-----------ILLLKDGQSIQQGAVEDILTSEN---MSRFF 260
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 87.3 bits (217), Expect = 3e-22
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG++RR ++A ++H PD+LILDEP VGLD + + + GKTV++ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
+ ++ +G + + + + + + + L + +L
Sbjct: 201 V-----------INHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGE 249
Query: 121 KK 122
Sbjct: 250 DP 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 77.6 bits (192), Expect = 1e-18
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GQ++R ++A L+ P +LILDEPT GLDP+ I LVEM E G T++I TH I+
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL---QLSQLQ 116
+ +M+EG ++ + +P + A + + L ++ L
Sbjct: 206 IV-----------PLYCDNVFVMKEGRVILQGNPKEVFA--EKEVIRKVNLRLPRIGHLM 252
Query: 117 EHNSKKG 123
E +K
Sbjct: 253 EILKEKD 259
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 72.0 bits (177), Expect = 2e-16
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GQ ++AL P+++ LDEP +D I + E GK ++ TH ++
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDM 187
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHN 119
L + L S + L+ V+ L + + +
Sbjct: 188 LNLYKEY----------KAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDKK 236
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 65.4 bits (160), Expect = 9e-14
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG+ ++ +A L DL +LD+P+ LD + + +T I H +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 60 EARLLC 65
+
Sbjct: 448 IHDYIA 453
Score = 55.8 bits (135), Expect = 2e-10
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG +R +A +LL D+ I D+P+ LD ++ + E+ + K V++ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDH 195
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 63.9 bits (156), Expect = 3e-13
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP----VLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++ +AL D+ ++DEP+ LD + SK I R + N KT I H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI-RRFIL--HNKKTAFIVEH 526
Query: 57 YIEEARLLC 65
A L
Sbjct: 527 DFIMATYLA 535
Score = 55.4 bits (134), Expect = 3e-10
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++ ++ + D+ + DEP+ LD + + + K V+ H
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 60.7 bits (148), Expect = 2e-12
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++ +A A+ L++LDEPT LD + L+++ TV+ TTH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 60 EARLLCAKL 68
+ + K
Sbjct: 191 QVVAIANKT 199
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 59.6 bits (145), Expect = 9e-12
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD----PVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A LL + D+ +LDEP+ LD +S++I L+E +N KT ++ H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLME--KNEKTALVVEH 530
Query: 57 YIEEARLLC 65
+ +
Sbjct: 531 DVLMIDYVS 539
Score = 56.2 bits (136), Expect = 1e-10
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A ALL DEP+ LD + + + GK V++ H
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 56.4 bits (137), Expect = 6e-11
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+Q+R ++A AL + P LL DEPT LD +K + D +++ E G ++++ TH E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH--ER 200
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEES 92
E A H M++G ++ E +
Sbjct: 201 ----------ELAELTHRTLEMKDGKVVGEIT 222
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 56.9 bits (138), Expect = 8e-11
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD----PVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A LL + D+ +LDEP+ LD +S++I L+E +N KT ++ H
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLME--KNEKTALVVEH 460
Query: 57 YIEEARLLC 65
+ +
Sbjct: 461 DVLMIDYVS 469
Score = 53.8 bits (130), Expect = 9e-10
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A ALL N DEP+ LD + + ++E GK+V++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 54.4 bits (132), Expect = 4e-10
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ + + AL+ NP ++++DEP G+ P L+ I++ ++E+ G T +I H ++
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPA 94
LY M G ++AE
Sbjct: 216 VLNYIDHLYV-----------MFNGQIIAEGRGE 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 54.1 bits (131), Expect = 5e-10
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R ++A AL +NP +++ D+PT LD + I L ++ E+GKTV++ TH +
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH--D 205
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEE 91
AR I +++G + EE
Sbjct: 206 I----------NVARFGERIIYLKDGEVEREE 227
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 52.6 bits (127), Expect = 2e-09
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 1 GGQQRRTSLAVALL-------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+ +R LA +L LL+LDEP LD ++ L +++ G +++
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM 188
Query: 54 TTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
++H + R AH L++ G +LA ++
Sbjct: 189 SSHDLNHT-----------LRHAHRAWLLKGGKMLASGRREEVL 221
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 52.7 bits (126), Expect = 3e-09
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTH 56
GG + + +LA A+L N D+L+LDEPT LD W LV + G T + +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAW--LVNYLNTCGITSITISH 603
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ+ + LA P L++LDEPT LD
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 52.4 bits (125), Expect = 3e-09
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 1 GGQQRRTSLAV------ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG++ LA L LLILDEPT LD + + + + V++
Sbjct: 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 310
Query: 55 TH 56
+H
Sbjct: 311 SH 312
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 51.6 bits (124), Expect = 6e-09
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL+ NP +L+LDE T LD + L + E G+T ++ H
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAH---- 583
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
RL R A +I GV++ + + LM + + +L Q +
Sbjct: 584 -RL-------STVRNADVIAGFDGGVIVEQGNHDELMRE------KGIYFKLVMTQTAGN 629
Query: 121 KK 122
+
Sbjct: 630 EI 631
Score = 47.0 bits (112), Expect = 2e-07
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL+ P +L+LDE T LD K + + L + E G+T ++ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAH---- 1228
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
RL + A +I +++ G + + L+A++ + + + +Q
Sbjct: 1229 -RL-------STIQNADLIVVIQNGKVKEHGTHQQLLAQKGI------YFSMVSVQAGAK 1274
Query: 121 K 121
+
Sbjct: 1275 R 1275
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 51.2 bits (123), Expect = 7e-09
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R ++A AL NP +L+ D+ T LDP ++SI + L ++ G T+++ TH ++
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225
Query: 60 EARLLC 65
+ +C
Sbjct: 226 VVKRIC 231
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 50.7 bits (122), Expect = 1e-08
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ +R ++A AL P +++ DEPT LDP + + + ++ G T+++ TH
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 49.4 bits (119), Expect = 2e-08
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL++NP +LI DE T LD I + ++ + G+TV+I H
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH---- 202
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
RL + A I +M +G ++ + L++
Sbjct: 203 -RL-------STVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 48.7 bits (117), Expect = 5e-08
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R S+A AL PD+L+ DEPT LDP L + + ++ E GKT+++ TH +
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 215
Query: 61 AR 62
AR
Sbjct: 216 AR 217
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 48.0 bits (115), Expect = 1e-07
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 30/127 (23%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV----EMTENGKTVMITTH 56
GGQ++R ++A ALL NP +L+LDE T LD +++ + LV + +G+TV++ H
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALD---AEN--EYLVQEALDRLMDGRTVLVIAH 540
Query: 57 YIEEARLLCAKLYCEEA--RQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQ 114
RL + + A+++ ++ +G + L+++ N + +L
Sbjct: 541 -----RL---------STIKNANMVAVLDQGKITEYGKHEELLSKPN-----GIYRKLMN 581
Query: 115 LQEHNSK 121
Q S
Sbjct: 582 KQSFISA 588
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 45.5 bits (108), Expect = 3e-07
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 1 GGQQRRTSLA------VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG++ LA + L LLILDEPT LD + + + + V++
Sbjct: 60 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 119
Query: 55 TH 56
+H
Sbjct: 120 SH 121
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 45.5 bits (109), Expect = 6e-07
Identities = 17/53 (32%), Positives = 37/53 (69%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+Q+ ++ AL+ P LL++DEP++GL P+L +++ + ++ + G T+++
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 45.2 bits (108), Expect = 8e-07
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+++R +LA AL+ P LL+LDEP +D + + L + E ++ TH +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
EA +L A + +M G ++ + L + +N
Sbjct: 189 EAAML-----------ADEVAVMLNGRIVEKGKLKELFSAKN 219
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 45.2 bits (108), Expect = 9e-07
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE------MTENGKTVMIT 54
GGQ++ +LA AL+ P LLILD T LD + + V+ +TV++
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALD---AGN--QLRVQRLLYESPEWASRTVLLI 213
Query: 55 THYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQ 114
T +L A +AH I ++EG + + + LM R + + +
Sbjct: 214 TQ-----QL-------SLAERAHHILFLKEGSVCEQGTHLQLMERGGC------YRSMVE 255
Query: 115 LQEHNS 120
S
Sbjct: 256 ALAAPS 261
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 44.5 bits (106), Expect = 2e-06
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ+ R SLA A+ + DL +LD P LD + K I++ V KT ++ T +E
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME- 191
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARR 100
L ++A I ++ EG + + L +
Sbjct: 192 --HL---------KKADKILILHEGSSYFYGTFSELQNLQ 220
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 43.9 bits (104), Expect = 3e-06
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ+ R SLA A+ + DL +LD P LD + K I++ V KT ++ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME- 220
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
L ++A I ++ EG + + L R F L +S
Sbjct: 221 --HL---------KKADKILILHEGSSYFYGTFSELQNLR------PDFSSK--LMGCDS 261
Query: 121 KK 122
Sbjct: 262 FD 263
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 43.7 bits (104), Expect = 3e-06
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R +LA AL +P+L++LDEP LD L + I + ++ NGK+ + +H E
Sbjct: 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVL 87
EA A I +M++G +
Sbjct: 201 EALQY-----------ADRIAVMKQGRI 217
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 43.3 bits (103), Expect = 3e-06
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE--NGKTVMITTHYI 58
GGQ++R SLA A+ N D+ + D+P +D + K I++ ++ KT ++ TH +
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189
Query: 59 EEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEH 118
L Q +I +M G + S L+AR AF + L+ +
Sbjct: 190 S---YL---------PQVDVIIVMSGGKISEMGSYQELLARD------GAFAEF--LRTY 229
Query: 119 NSKK 122
S
Sbjct: 230 ASHH 233
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 43.3 bits (103), Expect = 4e-06
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+++R ++A LL +P ++I DE T LD + ++ +N ++I
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII 210
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 43.3 bits (103), Expect = 4e-06
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+Q+R +LA AL+ NP +L+LDEP LDP ++ + L + +N TV+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 60 EA 61
EA
Sbjct: 190 EA 191
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 41.8 bits (99), Expect = 1e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R S+A L+NP +LILDE T LD
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALD 509
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 41.7 bits (99), Expect = 1e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A A L NP +L+LDE T LD
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLD 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-05
Identities = 24/160 (15%), Positives = 44/160 (27%), Gaps = 57/160 (35%)
Query: 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD-RLVEMTENGKTVMITTHYI--- 58
Q L + + LL+L + + + +++TT +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLN------------VQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 59 ----------------------EEARLLCAK-LYC------EEARQAH-----IIG-LMR 83
+E + L K L C E + II +R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 84 EGVLLAEESPASLMARRNVDSLETAF-LQLSQLQEHNSKK 122
+G+ + N D L T L+ L+ +K
Sbjct: 339 DGLATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRK 373
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+++R ++A +L P +++LDE T LD ++I L ++ N T+++
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A ALL + +LILDE T LD
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALD 512
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A ALL + +LILDE T LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 40.7 bits (96), Expect = 4e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R +LA AL P +L+ DEP +D + + + + ++ E G T + TH E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 60 EA 61
EA
Sbjct: 208 EA 209
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 38.7 bits (90), Expect = 2e-04
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 1 GGQQRRTSLAVAL-------LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+Q +L++ L + + +ILDEPTV LD + + ++ + ++I
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII 342
Query: 54 T 54
T
Sbjct: 343 T 343
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 36.0 bits (84), Expect = 0.002
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GGQ++R S+A AL+ P +LILD+ T +DP+ K I D L T+ T +IT
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 35.1 bits (81), Expect = 0.003
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE----NGKTVMITTH 56
G ++ LA ++L +L+LDEP+ LDPV +++ T TV++
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-----YQIIRRTLKQAFADCTVILCEA 212
Query: 57 YIE 59
IE
Sbjct: 213 RIE 215
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 33.8 bits (78), Expect = 0.008
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
G QQ+R +LA AL+ +P LL+LDEP LD
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 33.7 bits (77), Expect = 0.009
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 1 GGQQRRTSLAVAL------LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG++ S+++A+ D +DE LD + I L E+ K ++
Sbjct: 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI 341
Query: 55 TH 56
TH
Sbjct: 342 TH 343
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 32.1 bits (74), Expect = 0.030
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPT 26
GQ++ ++ A L NP +LILDE T
Sbjct: 495 GQRQLLAITRAFLANPKILILDEAT 519
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 29.9 bits (68), Expect = 0.21
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQQ+R ++A AL+ P++L+LDEP LD
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.0 bits (66), Expect = 0.41
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 16/44 (36%)
Query: 21 ILDEPTVGLDP--------VLSKSIWDRLVEMTENGKTVMITTH 56
+LDEPT GL P L +LV + G TV+ H
Sbjct: 756 VLDEPTTGLHPADVERLQRQL-----VKLV---DAGNTVIAVEH 791
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 28.7 bits (65), Expect = 0.41
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 12 ALLHNPDLLILDEPTVGLD----PVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64
A+L P+L ILDE GLD V++ + + + ++ +I THY R+L
Sbjct: 179 AVL-EPELCILDESDSGLDIDALKVVADGV----NSLRDGKRSFIIVTHY---QRIL 227
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509,
center for structural genomic infectious diseases,
csgid, transport prote; 2.43A {Yersinia pestis}
Length = 528
Score = 28.5 bits (64), Expect = 0.55
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 24 EPTVGLDPVL------SKSIWDRLVEMTENGKTV 51
EPT G DP+L + L++ E+
Sbjct: 41 EPTEGFDPMLGWSHGSYLLLHSPLLKQNEDFSWD 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.2 bits (64), Expect = 0.71
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 16/44 (36%)
Query: 21 ILDEPTVGL---D-----PVLSKSIWDRLVEMTENGKTVMITTH 56
ILDEPTVGL D VL RLV + G TV++ H
Sbjct: 831 ILDEPTVGLHFEDVRKLVEVL-----HRLV---DRGNTVIVIEH 866
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 27.9 bits (63), Expect = 0.73
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 1 GGQQRRTS-LAVALLHNPDLLILDEPTVGLD----PVLSKSIWDRLVEMTENGKTVMITT 55
GG+++R L + +L P +LDE GLD V+++ + M ++ T
Sbjct: 146 GGEKKRNEILQLLVL-EPTYAVLDETDSGLDIDALKVVARGV----NAMRGPNFGALVIT 200
Query: 56 HYIEEARLL 64
HY R+L
Sbjct: 201 HY---QRIL 206
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.2 bits (64), Expect = 0.79
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 16/44 (36%)
Query: 21 ILDEPTVGL---D-----PVLSKSIWDRLVEMTENGKTVMITTH 56
ILDEPT GL D VL RLV +NG TV++ H
Sbjct: 871 ILDEPTTGLHVDDIARLLDVL-----HRLV---DNGDTVLVIEH 906
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.3 bits (64), Expect = 0.84
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 16/44 (36%)
Query: 21 ILDEPTVGL---D-----PVLSKSIWDRLVEMTENGKTVMITTH 56
ILDEPT GL D V+ + LV + G TV++ H
Sbjct: 889 ILDEPTTGLHFDDIRKLLNVI-----NGLV---DKGNTVIVIEH 924
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.9 bits (63), Expect = 0.92
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 16/44 (36%)
Query: 21 ILDEPTVGL---D-----PVLSKSIWDRLVEMTENGKTVMITTH 56
ILDEPT GL D VL RLV +NG TV++ H
Sbjct: 569 ILDEPTTGLHVDDIARLLDVL-----HRLV---DNGDTVLVIEH 604
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 27.6 bits (62), Expect = 1.0
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQQ+R +LA AL+ P +L+ DEP LD
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 27.6 bits (62), Expect = 1.2
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A A++ PD+L++DEP LD
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>3rqt_A Putative uncharacterized protein; ligand binding component,
ABC-type import system, nickel, SI DI-peptides,
structural genomics; HET: MSE HIS EPE; 1.50A
{Staphylococcus aureus}
Length = 486
Score = 26.9 bits (60), Expect = 2.0
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 24 EPTVGLDP-----VLSKSIWDRLVEMTENGKTV 51
+ + P + + L + + GK
Sbjct: 31 KTK-SIAPYETDVPVKIGAAESLFKTNDQGKIE 62
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 26.8 bits (60), Expect = 2.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R +L A++ P + ++DEP LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.2
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 27/48 (56%)
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPA-SLMARRNVDSLE 106
+A L KLY +++ +PA ++ A ++E
Sbjct: 26 QASL---KLYADDS------------------APALAIKA-----TME 47
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 26.6 bits (59), Expect = 2.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64
+ + + P G DP L+ S RL E+ + K ++ H IE+ +
Sbjct: 196 ASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSC 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.1 bits (57), Expect = 3.3
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIEEARLL 64
+ A ++I+DE +G + SK D + + M + V+ T + L+
Sbjct: 89 ERAYREAKKDRRKVIIIDE--IGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.2
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 44/104 (42%)
Query: 8 SLAVALLHNPDLLILDEPTVGLDP-VLSKSIWDRLVEMTENGKTVMITTHYI--EEARLL 64
+ + + D G D VLS SI +R+V+ I + E
Sbjct: 454 DIQIPVYDTFD---------GSDLRVLSGSISERIVD--------CIIRLPVKWETT--- 493
Query: 65 CAKLYCEEARQAHII-----GLMREGVLLAEESPASLMARRNVD 103
+ + HI+ G GVL RN D
Sbjct: 494 ------TQFKATHILDFGPGGASGLGVLTH----------RNKD 521
Score = 26.2 bits (57), Expect = 4.6
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 34/110 (30%)
Query: 28 GLD-----PVLSKSIWDR------------LVEM-TENGKTVMI-----TTHYIEE--AR 62
G+D ++ +W+R ++++ N + I I E +
Sbjct: 1632 GMDLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 63 LLCAKLYCEEARQAHIIGLMREGVL-LAEESPASLMARRNVDSLETAFLQ 111
++ + + + I + E S L++ T F Q
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-------TQFTQ 1733
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 25.6 bits (57), Expect = 6.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 13 LLHNPDLLILDEPTVGLDPVLSKSI 37
+ D +I+D P GL P L K +
Sbjct: 350 SVKGFDTVIVDPPRAGLHPRLVKRL 374
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 25.3 bits (56), Expect = 6.8
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTV 51
G Q+ L V + P L T + ++ L + E
Sbjct: 16 GKPQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVK 66
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component
system, gene regulation, transcription factor, KDP
potassium transport system; 2.00A {Escherichia coli}
SCOP: c.23.1.1 PDB: 1zh4_A
Length = 121
Score = 24.3 bits (54), Expect = 9.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 6 RTSLAVALLHNPDLLILD 23
+ L A PDL+ILD
Sbjct: 35 QRGLLEAATRKPDLIILD 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,888,501
Number of extensions: 106332
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 93
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)