RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6322
(128 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 83.9 bits (207), Expect = 1e-21
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G R+ +A AL+ NP L ILDEPT GLD + ++ + L + ++ G T+++++H + E
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQL 112
LC + I L+ G ++ + L R ++E F ++
Sbjct: 197 EFLCDR-----------IALIHNGTIVETGTVEELKERYKAQNIEEVFEEV 236
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 83.0 bits (205), Expect = 3e-21
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+Q+ ++ AL+ P LL++DEP++GL P+L +++ + ++ + G T+++
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
A + H ++ G ++ E + L+ V
Sbjct: 202 ALKVA-----------HYGYVLETGQIVLEGKASELLDNEMV 232
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 79.1 bits (195), Expect = 1e-19
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R ++A A++ PD+L++DEP LD L ++ + ++ + T + TH
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EA + + I +M G LL SP + R
Sbjct: 199 EAMTMGDR-----------IAVMNRGQLLQIGSPTEVYLR 227
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 77.6 bits (191), Expect = 3e-19
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQQ+R ++A AL +NP +++ D+PT LD + I L ++ E+GKTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESP 93
AR I +++G + EE
Sbjct: 208 VARF------------GERIIYLKDGEVEREEKL 229
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 76.9 bits (189), Expect = 7e-19
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ + + AL+ NP ++++DEP G+ P L+ I++ ++E+ G T +I H ++
Sbjct: 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 212
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR-RNVDSLETAFL 110
LY +M G ++AE + + + ++
Sbjct: 213 VLNYIDHLY-----------VMFNGQIIAEGRGEEEIKNVLSDPKVVEIYI 252
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 76.8 bits (189), Expect = 8e-19
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQQ+R S+A AL PD+L+ DEPT LDP L + + ++ E GKT+++ TH + A
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 212
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
R + + + + +G + E P +
Sbjct: 213 RHVSSH-----------VIFLHQGKIEEEGDPEQVFGN 239
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 76.9 bits (189), Expect = 1e-18
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ+ R SLA A+ + DL +LD P LD + +++ V KT ++ T +E
Sbjct: 161 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 220
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
R A I ++ +G + + L + R
Sbjct: 221 LRK------------ADKILILHQGSSYFYGTFSELQSLRP 249
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 74.5 bits (183), Expect = 7e-18
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL + +LILDE T LD ++I L E+ + +T ++ H +
Sbjct: 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL-- 211
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
QA I ++ +G+++ + + L+A+
Sbjct: 212 ----------STIEQADEIVVVEDGIIVERGTHSELLAQ 240
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 73.3 bits (180), Expect = 2e-17
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R S+A L+NP +LILDE T LD I + L +++ +T +I H +
Sbjct: 157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRL-- 213
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
A I ++ G ++ + L+A+
Sbjct: 214 ----------STITHADKIVVIENGHIVETGTHRELIAK 242
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 70.7 bits (173), Expect = 1e-16
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +L A++ P + ++DEP LD L + L ++ + G T + TH
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EA + + I +M GVL SP + +
Sbjct: 202 EAMTMGDR-----------IAVMNRGVLQQVGSPDEVYDK 230
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 69.1 bits (169), Expect = 5e-16
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A A L NP +L+LDE T LD + L + + G+T ++ H +
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-- 198
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
A I + +G + L+A
Sbjct: 199 ----------STIVDADKIYFIEKGQITGSGKHNELVAT 227
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 68.8 bits (168), Expect = 7e-16
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 1 GGQQRRTSLAVALLH-------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+ +R LA +L LL+LDEP LD ++ L + + G +++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 54 TTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
++H + R AH L++ G +LA ++ N+
Sbjct: 188 SSHDLNHT-----------LRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 68.4 bits (167), Expect = 1e-15
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R ++A AL NP +L+ DE T LDP ++SI + L ++ G T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
+ +C + ++ G L+ +++ + + +
Sbjct: 203 VVKRIC-----------DCVAVISNGELIEQDTVSEVFSH 231
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 67.7 bits (165), Expect = 2e-15
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R ++ L+ P + +LDEP LD L + + + G+T++ TH
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EA L K I ++ G + P L
Sbjct: 193 EAMTLADK-----------IVVLDAGRVAQVGKPLELYHY 221
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 67.2 bits (164), Expect = 3e-15
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL++NP +LI DE T LD I + ++ + G+TV+I H +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL-- 198
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQ 116
+ A I +M +G ++ + L++ + + L QLQ
Sbjct: 199 ----------STVKNADRIIVMEKGKIVEQGKHKELLSEPE-----SLYSYLYQLQ 239
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 60.7 bits (147), Expect = 5e-13
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEE 60
G RR LA LL N ++ +LD+P V +D + ++E+ E G ++ + +
Sbjct: 129 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188
Query: 61 A 61
Sbjct: 189 C 189
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 61.1 bits (148), Expect = 6e-13
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++ +LA AL+ P +LILD+ T LD + L E E ++V++ T ++
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
A I + G + + LM +
Sbjct: 214 LVEQ------------ADHILFLEGGAIREGGTHQQLMEK 241
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 58.5 bits (141), Expect = 5e-12
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+Q+R +LA AL+ NP +L+LDEP LDP ++ + L + +N TV+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EAR++ I ++ +G L+ P + +
Sbjct: 190 EARIMA-----------DRIAVVMDGKLIQVGKPEEIFEK 218
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 57.5 bits (137), Expect = 2e-11
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 1 GGQQRRTS------LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG++ +++ L LLILDEPT LD + + + + V++
Sbjct: 281 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 340
Query: 55 THYIEEARLLCAKLYCEEARQAHIIGLMREG 85
+H E + H+I + E
Sbjct: 341 SHDEELKD------AAD-----HVIRISLEN 360
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 54.8 bits (130), Expect = 2e-10
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL 63
R ++++ L LLILDEPT LD + + + + V++ +H E
Sbjct: 214 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 272
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 53.1 bits (127), Expect = 5e-10
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIEE 60
G+++R +LA AL+ P LL+LDEP +D + + L + E ++ TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
A +L + + +M G ++ + L + +N
Sbjct: 190 AAMLADE-----------VAVMLNGRIVEKGKLKELFSAKN 219
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 51.6 bits (123), Expect = 1e-09
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIEE 60
QQ+R +LA AL+ +P LL+LDEP LD + S + E+ + G T+++ +H +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
+ + +G++ +G L+ P L
Sbjct: 204 IFAIADR-----------VGVLVKGKLVQVGKPEDLYDN 231
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 41.2 bits (95), Expect = 9e-06
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 1 GGQQRRTSL----AVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG++ +L A+ +LDE LD + I + ++ +
Sbjct: 335 GGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 37.3 bits (85), Expect = 2e-04
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
+ A ++I+DE K M + V+ T +
Sbjct: 84 AIPILERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDV 142
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVL 87
L+ A + R+ +L
Sbjct: 143 HPLVKEIRRLPGAVLIELTPENRDVIL 169
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the
epsilon subunit of DNA polymerase III {Escherichia coli
[TaxId: 562]}
Length = 174
Score = 25.7 bits (55), Expect = 1.4
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 20 LILDEPTVGLDPVLSKSIWDRLVEM----TENGKTVMITTHYI 58
++LD T G++ + + +++E+ N + H
Sbjct: 3 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVY 45
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 24.4 bits (53), Expect = 4.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 25 PTVGLDPVLSKSIWDR 40
++ L PV+S+ I D
Sbjct: 163 RSLPLKPVISQPIHDS 178
>d3c07a2 a.121.1.1 (A:90-235) Putative transcriptional regulator
SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Length = 146
Score = 24.0 bits (52), Expect = 5.8
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 71 EEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL 110
E AR I G+ R + A+ + + + + +
Sbjct: 47 EHARVEAI-GIHRAVLAGAKTKVPEELRDILPELMWLSQM 85
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 24.0 bits (51), Expect = 6.5
Identities = 6/67 (8%), Positives = 22/67 (32%)
Query: 33 LSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEES 92
+ V MT+ + ++ + ++ R +H+ + +
Sbjct: 29 FKSFFKEIRVVMTKTAEDLIPAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPA 88
Query: 93 PASLMAR 99
A+++ +
Sbjct: 89 TANILGQ 95
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 23.9 bits (51), Expect = 8.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 88 LAEESPASLMARRNVDSLETAFLQLSQLQEHNSKKGT 124
LA+ +++AR + + L+Q QEH K +
Sbjct: 240 LAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKS 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,099
Number of extensions: 17498
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 30
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.3 bits)