BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy633
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 69 SRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSK 128
S + + + F +A +L L++ LL YA YKQ VG CN KPS+++ E K K
Sbjct: 2 SSGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQK 61
Query: 129 YNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
+ AW +LG + S+AM +YIA++ ++D GW + E+
Sbjct: 62 WEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEK 98
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 76 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
E RF A + SL K + + +LKFY+ YKQAT G C + +P +++ + K++A
Sbjct: 25 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 132 WNSLGQMAKSEAMSKYIALLNEV 154
W+SLG M K EAM Y+ + ++
Sbjct: 85 WSSLGDMTKEEAMIAYVEEMKKI 107
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 98 LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV 154
+L+FY+ YKQAT+G C + +P +++ + K++AWNSLG+M++ EAMS YI + V
Sbjct: 35 MLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 91
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 99 LKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148
LK YALYKQAT G CN+ KP +++ K+K++AWN+LG + K A Y+
Sbjct: 40 LKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257
D ++ AKEG K++ KL K ++N D +G LH+A GH ++V+ LI
Sbjct: 36 DGRTPLHYAAKEGH-----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Query: 258 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
K GADVN DSDG L YA H ++++ L++ GA
Sbjct: 91 SK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G D VK L + ++N D +G LH+A GH ++V+ LI K GAD
Sbjct: 6 KRLIEAAENGNKDR-VKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN DSDG L YA H ++++ L++ GA
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257
D ++ AKEG K++ KL K ++N D +G LH+A GH ++V+ LI
Sbjct: 69 DGRTPLHYAAKEGH-----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 258 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
K GADVN +DSDG LD A+ + ++++ L G
Sbjct: 124 SK-GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 74 NMEDRFNQACDYLPSLVKKLDSSTLLKF--YALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
+M F + ++ L + ++ LK Y YKQ+T+G CNI +PS + + KY A
Sbjct: 1 HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
W S+ + + +A +Y+ +++E+ W+D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPYWQD 89
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAK 140
+A + LP+ K + LL+ YALYKQATVG + +KP +NM+ + K+ AW +L ++
Sbjct: 10 KAVNELPT---KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQ 66
Query: 141 SEAMSKYIALLNEVDAGW 158
+A +YIAL++++ A +
Sbjct: 67 EDAEKEYIALVDQLIAKY 84
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 77 DRFNQACDYLPSLVKKLDSST-LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
D F+ A Y+ + + S+ L FY YKQATVG CN KP ++ K K+ AWN+L
Sbjct: 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNAL 71
Query: 136 GQMAKSEAMSKYIALLNEVDAGWED 160
M+ A Y+ LL+ + W +
Sbjct: 72 RGMSTESAKEAYVKLLDTLAPSWRN 96
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
F++A + + +L K +L Y+ YKQATVG N ++P + + K+K++AWN L
Sbjct: 5 FDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
+K +AM YI + E+
Sbjct: 65 SKEDAMKSYIDKVEEL 80
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N +D+ G+ LH A RGHL++V+ L+ K GADVN +DS G L A + H +++E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 98 VLLEYGA 104
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
F++A + + L K +L Y+ YKQATVG N ++P + + K+K++AWN L
Sbjct: 5 FDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
+K +AM YI + E+
Sbjct: 65 SKEDAMKAYIDKVEEL 80
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
F +A + + L K +L Y YKQATVG N ++P + K+K++AWN L
Sbjct: 5 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
+K +AM YI + E+
Sbjct: 65 SKEDAMKAYINKVEEL 80
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
F +A + + L K +L Y YKQATVG N ++P + K+K++AWN L
Sbjct: 6 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
Query: 139 AKSEAMSKYIALLNEV 154
+K +AM YI + E+
Sbjct: 66 SKEDAMKAYINKVEEL 81
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L++ V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 34 DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 90
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D DG L A H +++E L+ +GA
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D++G LH A GHL++V+ L+ K GAD
Sbjct: 4 KKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGAD 60
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D DG L A H +++E L+ +GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L++ V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 67 DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 123
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
GADVN D G D A H D+ E L
Sbjct: 124 GADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N LDE+GL LH A GHL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D+ G L A H +++E L+ GA
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L+ +V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 46 DGYTPLHLAAREGHLE-IVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 102
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D DG L A H +++E L+ +GA
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D++G LH A GHL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D DG L A H +++E L+ +GA
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L+ +V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 79 DGYTPLHLAAREGHLE-IVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 135
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
GADVN D G D + + DL E L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L++ V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 34 DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 90
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D DG L A H +++E L+ +GA
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D++G LH A GHL++V+ L+ K GAD
Sbjct: 4 KKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGAD 60
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D DG L A H +++E L+ +GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ A+EG L++ V+ L K ++N D++G LH A GHL++V+ L+ K
Sbjct: 67 DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 123
Query: 261 GADVNVTDSDGDYGLDYA 278
GADVN D G D A
Sbjct: 124 GADVNAQDKFGKTPFDLA 141
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++N D +GL LH A GHL++V+ L+ K
Sbjct: 13 DLGKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D G L A I H +++E L+ GA
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D G+ LH A DRGHL+VV+ L+ K GADVN D +G L A I H +++E
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 131 VLLKHGA 137
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D G LH A GHL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEV--RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN DS G L A H +++E L+ +GA
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 220 KQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276
K++ KL K ++N D +G LH A + GH +VV+ LI K GADVN DSDG L
Sbjct: 50 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLH 108
Query: 277 YAKAIEHTDLIEYLVNSGA 295
+A H ++++ L++ GA
Sbjct: 109 HAAENGHKEVVKLLISKGA 127
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G D VK L + ++N D +G LH A + GH +VV+ LI K GAD
Sbjct: 6 KRLIEAAENGNKDR-VKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN DSDG L +A H ++++ L++ GA
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 220 KQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276
K++ KL K ++N D +G LH A + GH +VV+ LI K GADVN +DSDG LD
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLD 141
Query: 277 YAKAIEHTDLIEYLVNSGA 295
A+ + ++++ L G
Sbjct: 142 LAREHGNEEVVKLLEKQGG 160
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++N D +GL LH A GHL++V+ L+ K
Sbjct: 13 DLGKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D G L A I H +++E L+ GA
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G D + L D N + D +G LH+A + GH ++V+ L+ K GAD
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSK-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
N DSDG L YA H ++++ L++ GA
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
D + D + + +A E +VK L K + N D +G LH+A + GH ++V+
Sbjct: 29 DPNASDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ K GAD N DSDG L YA H ++++ L++ GA
Sbjct: 88 LLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
D + D + + +A E +VK L K + N D +G LH+A + GH ++V+
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ K GAD N +DSDG LD A+ + ++++ L G
Sbjct: 121 LLLSK-GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 78 RFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
+F++A + + SL K K L FY +KQATVG NI +P + K+K++AW
Sbjct: 7 KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWK 66
Query: 134 SLGQMAKSEAMSKYIALLNEV 154
S+ +K A KY+ L E+
Sbjct: 67 SVEGTSKEVAYQKYVEKLLEI 87
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D G+ LH A RGHL++V+ L+ K GADVN +DS G L A H +++E
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 289 YLVNSGA 295
L+ +GA
Sbjct: 131 VLLKNGA 137
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++N D G LH A GHL++V+ L+ K
Sbjct: 13 DLGKKLLEAARAGQDDEV--RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-KN 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN DS G L A H +++E L+ +GA
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ A+ G L++ VK L + ++N D+NG LH A GHL+VV+ L+E GADVN
Sbjct: 6 LHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVN 62
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D +G L A H ++++ L+ +GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ A+ G L++ VK L + ++N D+NG LH A GHL+VV+ L+E GADVN
Sbjct: 39 LHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVN 95
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D +G L A H ++++ L+ +GA
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
NG LH A GHL+VV+ L+E GADVN D +G L A H ++++ L+ +GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D++G LH A +GHL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEV--RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
VN D GD L A H +++E L+ +GA + T
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
D + ++ A +G L+ +V+ L K ++N D+ G LH A GHL++V+ L+ K
Sbjct: 45 DSGKTPLHLAAIKGHLE-IVEVLLK-HGADVNAADKMGDTPLHLAALYGHLEIVEVLL-K 101
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN TD+ G L A H +++E L+ GA
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + + D N N D G LH A D HL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAN--DRKGNTPLHLAADYDHLEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D+DG L A H +++E L+ GA
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A+ G L+++ L D +N D+NG LH A GHL+VV+ L+E GADVN D
Sbjct: 10 ARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK 66
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
+G L A H ++++ L+ +GA+
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
NG LH A GHL+VV+ L+E GADVN D +G L A H ++++ L+ +GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
F++A + + L + D L + Y LYKQA VG NI P +++ K+K+ AWN +
Sbjct: 8 FDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGL 67
Query: 139 AKSEAMSKYIALLNEV 154
+ +A S YI+ E+
Sbjct: 68 STEDATSAYISKAKEL 83
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 170 ESQESGSKENEGQTKGWVNVSSMI-----NDESQLDDNEKNIYEWAKEGKLDMLVKQLTK 224
E Q S + G V++ M+ N ++ +D + E A+ L+ VK L K
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA-VKYLIK 65
Query: 225 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 284
++ D G CLH A +GH +VVQ+L+ DVN D G + +A +H
Sbjct: 66 AGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 285 DLIEYLVNSGA 295
DL++ L++ G+
Sbjct: 125 DLVKLLLSKGS 135
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 209 WAKEGK-LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI-EKCGADVNV 266
WA E K +D++ L+K D NI +EN CLHWA G + + + L+ KC D++
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEEN--ICLHWAAFSGCVDIAEILLAAKC--DLHA 172
Query: 267 TDSDGDYGLDYA 278
+ GD L A
Sbjct: 173 VNIHGDSPLHIA 184
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
AK+G + +V+ L ++N D+ G + WA + H+ +V+ L+ K G+D+N+ D+
Sbjct: 85 AKKGHYE-VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDN 142
Query: 270 DGDYGLDYAKAIEHTDLIEYLV 291
+ + L +A D+ E L+
Sbjct: 143 EENICLHWAAFSGCVDIAEILL 164
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A G+ D + ++ ++N D+NGL LH A G L++V+ L+ K
Sbjct: 5 DLGKKLLEAAAAGQDDEV--RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KN 61
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN +DS G L A H +++E L+ GA
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+D ++ A G L+++ L D N + L G+ LH A GHL++V+ L+ K
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL--TGITPLHLAAATGHLEIVEVLL-K 101
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D+DG L A H +++E L+ GA
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN TD+DG L A + H +++E L+ +GA
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ + N D G LH A GHL++V+ L+ +
Sbjct: 1 DLGKKLLEAARAGQDDEV--RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL-RN 57
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D++G L A ++ H +++E L+ GA
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N +D NG LH A GHL++V+ L+ K GADVN D+ G L A H +++E
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 119 VLLKHGA 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 180 EGQTKGWVNV--SSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG 237
+G +KG + S+ + ++++ DN ++E AK G L L + L +N LD+ G
Sbjct: 51 KGTSKGRTGLIPSNYVAEQAESIDNP--LHEAAKRGNLSWLRECLDN--RVGVNGLDKAG 106
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
L+WAC GH +V+ L + ++N + GD L A + D+++ L+ GA +
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++NQ D++G + LHWAC G VV+ LI + GA +NV + D L A + H D+++
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 289 YLV 291
L+
Sbjct: 90 KLL 92
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 194 NDESQLDDNEKNIYEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
ND +Q DD+ + WA +EG+ V ++ ++ IN ++ LH A GH +
Sbjct: 30 NDLNQGDDHGFSPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDI 87
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VQ L++ AD+N + G+ L YA + E LV +GA
Sbjct: 88 VQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 190 SSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249
+ IN ++ DD ++ A G D++ K L D IN ++E+G LH+AC G
Sbjct: 62 GARINVMNRGDDTPLHLA--ASHGHRDIVQKLLQYKAD--INAVNEHGNVPLHYACFWGQ 117
Query: 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280
+V + L+ GA V++ + G+ +D AKA
Sbjct: 118 DQVAEDLVAN-GALVSICNKYGEMPVDKAKA 147
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D +G LH A GHL++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGRDDEV--RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D G L A H +++E L+ +GA
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N +D G+ L A GHL++V+ L+ K GADVN D +G L A H +++E
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 289 YLVNSGA 295
L+ +GA
Sbjct: 131 VLLKNGA 137
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G D VK L + ++N D +G LH A + GH +VV+ L+ + GAD
Sbjct: 6 KRLIEAAENGNKDR-VKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
N DSDG L A H ++++ L++ GA
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
N D +G LH A + GH +VV+ L+ + GAD N DSDG L A H ++++ L
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 291 VNSGA 295
++ GA
Sbjct: 123 LSQGA 127
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
N D +G LH A + GH +VV+ L+ + GAD N +DSDG LD A+ + ++++ L
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 291 VNSGA 295
G
Sbjct: 156 EKQGG 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++NQ D++G + LHWAC G VV+ LI + GA +NV + D L A + H D+++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 289 YLV 291
L+
Sbjct: 85 KLL 87
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 194 NDESQLDDNEKNIYEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
ND +Q DD+ + WA +EG+ V ++ ++ IN ++ LH A GH +
Sbjct: 25 NDLNQGDDHGFSPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDI 82
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VQ L++ AD+N + G+ L YA + E LV +GA
Sbjct: 83 VQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A G D++ K L D IN ++E+G LH+AC G +V + L+ GA V++ +
Sbjct: 75 ASHGHRDIVQKLLQYKAD--INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK 131
Query: 270 DGDYGLDYAKA 280
G+ +D AKA
Sbjct: 132 YGEMPVDKAKA 142
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
AK G L++ V+ L K ++N D G LH A D GHL++V+ L+ K GADVN D
Sbjct: 55 AKTGHLEI-VEVLLKYG-ADVNAWDNYGATPLHLAADNGHLEIVEVLL-KHGADVNAKDY 111
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
+G L A H +++E L+ GA
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGA 137
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 213 GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272
G + +++ L + D N +D GL LH AC ++ +V+ L+E GA++N D++G
Sbjct: 51 GDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGW 107
Query: 273 YGLDYAKAIEHTDLIEYLVNSGAH 296
L A + + D+ EYL++ GAH
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAH 131
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
AC G + V L+E+ GAD+N + DG L A ++ D++++LV +GA
Sbjct: 47 ACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D+NG+ LH A +RGHL++V+ L+ K GADVN D G D + + DL E
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 289 YL 290
L
Sbjct: 164 IL 165
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++N D G LH A GHL++V+ L+ K
Sbjct: 13 DLGKKLLEAARAGRDDEV--RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-KN 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D+ G L A H +++E L+ +GA
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I++ A+ G+LD L L D NI D G LH A GHL+VV+ L++ ++V
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ GD D A+ +++ + +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D ++ AK G + + K L+K D N D N LH A GH ++V+ L+ K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKLLLAK- 64
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN DG+ AK H ++++ L GA
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 235 ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294
++G LH A GH + V+ L+ K GADVN DG+ L A H ++++ L+ G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 295 A 295
A
Sbjct: 66 A 66
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
EG+ D++ + + ++ D ++ ++ G+ LH A GH ++V+ L++ G +VN DSDG
Sbjct: 47 EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 272 DYGLDYAKAIEHTDLIEYLVNSGA 295
L A + + + ++LV SGA
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
EG+ D++ + + ++ D ++ ++ G+ LH A GH ++V+ L++ G +VN DSDG
Sbjct: 47 EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 272 DYGLDYAKAIEHTDLIEYLVNSGA 295
L A + + + ++LV SGA
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I++ A+ G LD L L D NI D G LH A GHL+VV+ L++ ++V
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ GD D A+ +++ + +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I A GKLD L +++ K + D++ LHWAC GH ++V+ L++ G VN
Sbjct: 10 ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
D G L A + ++++ L+ GAH
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+H A +G+LK+V H++ A N+ D++G+ L A E + ++LV GA
Sbjct: 143 MHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D GL LH A DRGHL++V+ L+ K GADVN D G D + + DL E
Sbjct: 105 DVNAQDAYGLTPLHLAADRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 289 YL 290
L
Sbjct: 164 IL 165
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
K + E A+ G+ D + ++ ++N D+ G LH A GH ++V+ L+ K GAD
Sbjct: 16 KKLLEAARAGQDDEV--RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN D+DG L A H +++E L+ GA
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I A GKLD L +++ K + D++ LHWAC GH ++V+ L++ G VN
Sbjct: 10 ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
D G L A + ++++ L+ GAH
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+H A +G+LK+V H++ A N+ D++G+ L A E + ++LV GA
Sbjct: 143 MHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D V+ LT ++N D G LH A GHL++V+ L+ K
Sbjct: 13 DLGKKLLEAARAGQDDE-VRILTA-NGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KN 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN T + G L A +H +++E L+ GA
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I++ A+ G LD L L D NI D G LH A GHL+VV+ L++ ++V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ GD D A+ +++ + +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I++ A+ G LD L L D NI D G LH A GHL+VV+ L++ ++V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ GD D A+ +++ + +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K + +E
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 185
Query: 65 TASFS 69
AS S
Sbjct: 186 MASAS 190
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I++ A+ G LD L L D NI D G LH A GHL+VV+ L++ ++V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ GD D A+ +++ + +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K + +E
Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 184
Query: 65 TASFS 69
AS S
Sbjct: 185 MASAS 189
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 80
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K + +E
Sbjct: 137 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 186
Query: 65 TASFS 69
AS S
Sbjct: 187 MASAS 191
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 46 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 82
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV 264
+I++ A +G+LD L + L K D +N+ DE G L WA G ++ V+ L+E GAD
Sbjct: 5 SIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADP 62
Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLV 291
++ + + L A +TD++ L+
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLL 89
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
+D +IN D NG L +A H+K V+ L+ + GAD+ G +D A A+
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVAL 145
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K + +E
Sbjct: 129 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 178
Query: 65 TASFS 69
AS S
Sbjct: 179 MASAS 183
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 38 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 74
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV 264
+I++ A +G+LD L + L K D +N+ DE G L WA G ++ V+ L+E GAD
Sbjct: 5 SIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADP 62
Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLV 291
++ + + L A +TD++ L+
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLL 89
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
+D +IN D NG L +A H+K V+ L+ + GAD+ G +D A A+
Sbjct: 91 RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVAL 145
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Daz-Associated Protein 1
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
++ +M DK T S+GFGFV F++ V V ++ H L+G + +P Q
Sbjct: 44 VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
++A +M DK+TG S+GFGFVT+ + +AVD+V
Sbjct: 115 IDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK 57
+M D TG S+GFGF++F+ +VD+V T H+L+G + + + + Q K
Sbjct: 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRDEQDK 86
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D + + E A+ G+ D + ++ ++N D G LH A GHL++V+ L+ K
Sbjct: 13 DLGRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADV+ +D G L A H +++E L+ +GA
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+++ D G LH A GHL++V+ L+ K GADVN DSDG L A + +++E
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 131 VLLKHGA 137
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNC--LHWACDRGHLKV 252
D Q D + WA LVK K ++QL + LN LHWA +GHL +
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGD-LNSTPLHWATRQGHLSM 91
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294
V L+ K GAD ++ D +G + A HT ++ YL+ G
Sbjct: 92 VVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 193 INDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
I D+ D N ++ ++G L M+V+ + D ++ +D G +C+H A GH +
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL--IDGEGCSCIHLAAQFGHTSI 124
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 284
V +LI K G DV++ D +G L +A H+
Sbjct: 125 VAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHS 155
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I+ A+ G ++ + K +D ++ +D+NG+ L WA R H L+ VN
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD--VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170
Query: 266 VTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ D + L +A +T +I L+ +GA
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
N ++++ A +G++ L T+++ N IN DE G L WA G + VV+ L++
Sbjct: 19 NSLSVHQLAAQGEMLYLA---TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN- 74
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GAD + + L A + +TD+++ L++ G
Sbjct: 75 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
++N+ D NG L +A H+K V+ L+E GAD + G +D A A+
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVAL 161
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
N ++++ A +G++ L T+++ N IN DE G L WA G + VV+ L++
Sbjct: 1 NSLSVHQLAAQGEMLYLA---TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN- 56
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GAD + + L A + +TD+++ L++ G
Sbjct: 57 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
++N+ D NG L +A H+K V+ L+E GAD + G +D A A+
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVAL 143
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
N ++++ A +G++ L T+++ N IN DE G L WA G + VV+ L++
Sbjct: 3 NSLSVHQLAAQGEMLYLA---TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN- 58
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GAD + + L A + +TD+++ L++ G
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
++N+ D NG L +A H+K V+ L+E GAD + G +D A A+
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVAL 145
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSG 294
NG CLH A G+L +V+ L+ GADVN + +G L A +++ DL+ L+ G
Sbjct: 116 NGHTCLHLASIHGYLGIVELLV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 295 A 295
A
Sbjct: 175 A 175
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
D G LH AC+ GHLKVV+ L++ A VN T D L A H D+++ L++
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 294 GA 295
GA
Sbjct: 99 GA 100
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ AK G L+++ L D N + D G LH A D GHL++V+ L+ K GADVN
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNAD--DTIGSTPLHLAADTGHLEIVEVLL-KYGADVN 140
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYL 290
D G D + + DL E L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D+ GD L A + H +++E L+ +GA
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSG 294
NG CLH A G+L +V+ L+ GADVN + +G L A +++ DL+ L+ G
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 171
Query: 295 A 295
A
Sbjct: 172 A 172
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
++ ++ D TG S+GFGFV F+ E+VDKV H L G
Sbjct: 27 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 67
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276
++N D G LH A D GHL++V+ L+ K GADVN D G D
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGKTAFD 151
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++N D++G LH A GHL++V+ L+ K
Sbjct: 1 DLGKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 57
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
GADVN D G D + + DL E L
Sbjct: 58 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GADVN D DG L A H +++E L+ +GA
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK 57
VM D T S+GFGFVTF ++ VDKV + H L+ + + + +Q K
Sbjct: 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 109
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain
Of Mouse Musashi1
Length = 77
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLE 40
VM D T S+GFGFVTF ++ VDKV + H L+
Sbjct: 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 67
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 207 YEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
+ WA K G LD + + K +D +N+ E G LH+A D G L++++ L+ K GAD+N
Sbjct: 11 FMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADIN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L A H ++ L++ GA
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
+ A GKL+ L + + K + D++ LHWAC GH ++V+ L++ G VN
Sbjct: 11 VCNLAYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 68
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D G L A + ++++ L+ GA
Sbjct: 69 DKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
+ A GKL+ L + + K + D++ LHWAC GH ++V+ L++ G VN
Sbjct: 10 VCNLAYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D G L A + ++++ L+ GA
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 184 KGWVNVSSMINDESQLDDNE-----KNIYEWAKEGKLDMLVKQLTKL---KDFNINQLDE 235
KG V V ++ DE D N +N A D V+ +T L ++N E
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
G L A ++ HL +VQ L+E+ ++N TDSDG L A ++ + E L GA
Sbjct: 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 232 QLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
+L + G L A ++GH++V++ L+++ GADVN D+ G L +A
Sbjct: 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
++ ++ D NTG S+GFGF+ F++ +V+KV H L+G
Sbjct: 39 VDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG 79
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSH 37
+A +MFDK T +GFGFVTF++++ V+KV H
Sbjct: 28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH 63
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++ D+NG LH A GHL+VV+ L+E
Sbjct: 23 DLGKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-A 79
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
GADV D G D + + DL E L
Sbjct: 80 GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKI 60
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKAL 181
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 207 YEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
+ WA K G LD + + K +D +N+ E G LH+A D G L++++ L+ K GAD+N
Sbjct: 6 FMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADIN 62
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L A H ++ L++ GA
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKI 60
+M D+ +G +GF FVTF + ++VDK+ H + G HN +V+K +
Sbjct: 134 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKAL 179
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D NT S+GFGFVT+ E VD + H ++G
Sbjct: 43 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 79
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N++ G+ CLH A + +V Q LIE GA V + D L A ++ LIE
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 289 YLVNSGAHSSN 299
L G + N
Sbjct: 158 LLCGLGKSAVN 168
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 222 LTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEK-CGADVNVTDSDGDYGLDYAK 279
L+K+++ N++ D++G H AC G+L+VV+ L ++ D+N + G L A
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 280 AIEHTDLIEYLVNSGA 295
+ ++ ++L+ +GA
Sbjct: 116 GKKWFEVSQFLIENGA 131
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
N+ ++ A G L L++ L L +N D+ G L A GH L+EK G
Sbjct: 140 NQIPLHRAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 262 ADVNVTDSDGDYGLDYA 278
A+ ++ D+ G D A
Sbjct: 199 AEYDLVDNKGAKAEDVA 215
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N++ G+ CLH A + +V Q LIE GA V + D L A ++ LIE
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 289 YLVNSGAHSSN 299
L G + N
Sbjct: 158 LLCGLGKSAVN 168
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 222 LTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEK-CGADVNVTDSDGDYGLDYAK 279
L+K+++ N++ D++G H AC G+L+VV+ L ++ D+N + G L A
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 280 AIEHTDLIEYLVNSGA 295
+ ++ ++L+ +GA
Sbjct: 116 GKKWFEVSQFLIENGA 131
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
N+ ++ A G L L++ L L +N D+ G L A GH L+EK G
Sbjct: 140 NQIPLHRAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 262 ADVNVTDSDGDYGLDYA 278
A+ ++ D+ G D A
Sbjct: 199 AEYDLVDNKGAKAEDVA 215
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 8 DKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQ------PSDSHNS 54
D+ T S+GF FV F +K +A D + + D VL+G L +Q P DSH+S
Sbjct: 105 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 158
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
D K + E A+ G+ D + ++ ++ D+NG LH A GHL+VV+ L+E
Sbjct: 5 DLGKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-A 61
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
GADVN D G D + + DL E L
Sbjct: 62 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N++ G+ CLH A + +V Q LIE GA V + D L A ++ LIE
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 289 YLVNSGAHSSN 299
L G + N
Sbjct: 158 LLCGLGKSAVN 168
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 222 LTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEK-CGADVNVTDSDGDYGLDYAK 279
L+K+++ N++ D++G H AC G+L+VV+ L ++ D+N + G L A
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 280 AIEHTDLIEYLVNSGA 295
+ ++ ++L+ +GA
Sbjct: 116 GKKWFEVSQFLIENGA 131
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
N+ ++ A G L L++ L L +N D+ G L A GH L+EK G
Sbjct: 140 NQIPLHRAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 262 ADVNVTDSDGDYGLDYA 278
A+ ++ D+ G D A
Sbjct: 199 AEYDLVDNKGAKAEDVA 215
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N E G L A ++ HL +VQ L+E+ ++N TDSDG L A ++ + E
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Query: 289 YLVNSGAHS 297
L GA +
Sbjct: 271 LLCKRGAST 279
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 232 QLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
+L + G L A ++GH++V++ L+++ GADVN D+ G L +A
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 8 DKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQ------PSDSHNS 54
D+ T S+GF FV F +K +A D + + D VL+G L +Q P DSH+S
Sbjct: 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 135
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LH AC +GH +VV+ L++ A N D G+ L YA + H +L+ L+ GA
Sbjct: 123 LHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
N+ D +G L +AC GH ++V L++ GA +N +++ G+ L A +H ++E L
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 291 VNSGA 295
+ GA
Sbjct: 205 LLHGA 209
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI---QPSDSHNS 54
+++D +GFGF+TF+++++VD+ + H + G ++ + +P DS +S
Sbjct: 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSS 94
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 213 GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272
G++D++ L D N+ D++G L AC+ GH ++ L+ D+++TD DG
Sbjct: 194 GRVDVVKALLACEADVNVQ--DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGS 251
Query: 273 YGLDYA 278
L A
Sbjct: 252 TALMVA 257
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275
V QL +L + N + + G L A G + VV+ L+ C ADVNV D DG L
Sbjct: 166 VLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALL-ACEADVNVQDDDGSTAL 220
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 224 KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE 258
+L D+ +N D NG LH++ + VVQ L++
Sbjct: 98 RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD 132
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L LH A GHL +V++L+++ GA NV++ + L A HT++ +YL+ + A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ A+EG +M+ L+K + N+ +++GL LH GH+ V LI K G V+
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLI-KHGVMVD 305
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLV 291
T G L A + L+++L+
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLL 331
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 206 IYEWAKEGKL---DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGA 262
++ A+EG + D+L+K ++ G LH A G++K+V+ L++ A
Sbjct: 282 LHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-A 335
Query: 263 DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
DVN G L A HTD++ L+ +GA
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ AK G L+ +V+ L K ++N D G LH A GHL++V+ L+E GADVN
Sbjct: 51 LHLAAKRGHLE-IVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYL 290
D G D + + DL E L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ AK G L+ +V+ L K ++N D G LH A GHL++V+ L+E GADVN
Sbjct: 51 LHLAAKRGHLE-IVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYL 290
D G D + + DL E L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of
Hypothetical Polyadenylate-Binding Protein (Pabpn1)
From Homo Sapiens At 1.95 A Resolution
Length = 89
Score = 35.4 bits (80), Expect = 0.041, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52
+++ DK +G KGF ++ F +KE+V + D + G ++ + P ++
Sbjct: 37 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52
+++ DK +G KGF ++ F +KE+V + D + G ++ + P ++
Sbjct: 36 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 84
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous
Nuclear Ribonucleaoproteins A2B1
Length = 116
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D + S+GFGFVTF + VD + H ++G
Sbjct: 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 95
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+NQ D G LH A GH + +++ GAD+ DS+G L A + D++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVT 318
Query: 289 YL 290
L
Sbjct: 319 LL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+NQ D G LH A GH + +++ GAD+ DS+G L A + D++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVT 318
Query: 289 YL 290
L
Sbjct: 319 LL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+NQ D G LH A GH + +++ GAD+ DS+G L A + D++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVT 318
Query: 289 YL 290
L
Sbjct: 319 LL 320
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
+++ DK +G KG+ ++ F + +VD + D V G + + P
Sbjct: 67 TILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
D +G + +H A G L ++ L+E GADVNV D G + A HT ++ +L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
A V+ D+ TG S+G+GFVT ++ A ++ + +++G + ++
Sbjct: 47 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGS 42
+N+ V+ D+ TGLS+G F+ F + EA + + S + H GS
Sbjct: 116 INSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGS 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
D +G + +H A G L ++ L+E GADVNV D G + A HT ++ +L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of
Rna Binding Motif Protein 23
Length = 95
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
N +M D +TG SKG+GF+TF + E + L G L+ +P
Sbjct: 34 NIVLMKDSDTGRSKGYGFITFSDSECARRALEQ----LNGFELAGRP 76
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGS 42
+N+ V+ D+ TGLS+G F+ F + EA + + S + H GS
Sbjct: 116 INSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGS 158
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 277
+VK L K N ++ DE+G + A G ++VV +LI++ GA V D+
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ-GASVEAVDATDHTARQL 352
Query: 278 AKAIEHTDLIE 288
A+A H ++++
Sbjct: 353 AQANNHHNIVD 363
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
G LH+A + +V++L+ + G++ + D DG + A +++ YL+ GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 240 CLHWACDRGHLK----VVQHLIEKC---GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
LHW + ++ H ++C GADVN D D + L A L+ YL
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXK 187
Query: 293 SGA 295
+GA
Sbjct: 188 AGA 190
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 225 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEH 283
L+D +++ +DENG L + G K V+ L+ + GAD++ D G L A
Sbjct: 64 LEDRDVDAVDENGRTALLFVAGLGSDKCVR-LLAEAGADLDHRDMRGGLTALHMAAGYVR 122
Query: 284 TDLIEYLVNSGA 295
+++E LV GA
Sbjct: 123 PEVVEALVELGA 134
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
TG+SKG+GFV+F N V K+ + + G +L + P+
Sbjct: 47 TGVSKGYGFVSFYNDVDVQKIVESQIN-FHGKKLKLGPA 84
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
TG+SKG+GFV+F N V K+ + + G +L + P+
Sbjct: 46 TGVSKGYGFVSFYNDVDVQKIVESQIN-FHGKKLKLGPA 83
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 225 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEH 283
L+D +++ +DENG L + G K V+ L+ + GAD++ D G L A
Sbjct: 65 LEDRDVDAVDENGRTALLFVAGLGSDKCVR-LLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 284 TDLIEYLVNSGA 295
+++E LV GA
Sbjct: 124 PEVVEALVELGA 135
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
+M D TG SKG+GF+TF + E K L G L+ +P
Sbjct: 58 LMMDSETGRSKGYGFITFSDSECAKKALEQ----LNGFELAGRP 97
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKE 26
+ A ++ D+ TG SKGFGFV F ++E
Sbjct: 40 VRARIVTDRETGSSKGFGFVDFNSEE 65
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition
In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEA 27
+N +MFD TG SKG+ F+ F++ E+
Sbjct: 32 INLKMMFDPQTGRSKGYAFIEFRDLES 58
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 165 EINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTK 224
E DE E+ NE + + + +N D K+ G + + QL
Sbjct: 22 EYKKDELLEAARSGNEEKLMALL---TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 225 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+++ D+ GL LH AC GH +V + L+ K GA VN D
Sbjct: 79 QHGADVHAKDKGGLVPLHNACSYGHYEVTE-LLLKHGACVNAMD 121
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 205 NIYEWAKEGKLDMLVKQLT-KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
++ + A+E L + K L ++ +F Q E L+C + +V + L+ K GA+
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GAN 239
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VN + D L A H D++E L GA
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEA 27
+N +MFD TG SKG+ F+ F++ E+
Sbjct: 30 INLKMMFDPQTGRSKGYAFIEFRDLES 56
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+++ D+ GL LH AC GH +V + L+ K GA VNV D
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVAD 109
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEA 27
++A V DK T LSK FGFV+F N ++
Sbjct: 68 ISAKVFIDKQTSLSKCFGFVSFDNPDS 94
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEA 27
+N +MFD TG SKG+ F+ F++ E+
Sbjct: 31 INLKMMFDPQTGRSKGYAFIEFRDLES 57
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+++ D+ GL LH AC GH +V + L+ K GA VNV D
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVAD 107
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+++ D+ GL LH AC GH +V + L+ K GA VNV D
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVAD 105
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
D TG SKGFGFV F E KV S H+++G + +S SQ
Sbjct: 50 DLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQ 96
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 5 VMFDKNTGLSKGFGFVTFQN-KEAVDKVFSTDSHVLEGSRLSI 46
V+ D+ T S+GFGFVTF+N +A D + + + ++G ++ +
Sbjct: 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
TG+SKG+GFV+F N V K+ + + G +L + P+
Sbjct: 45 RTGVSKGYGFVSFYNDVDVQKIVESQIN-FHGKKLKLGPA 83
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
+N D NG CL+ A G++ +V L++ GAD + + G +D+ +E
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE 327
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 228 FNIN-QLDENGLNCLHWACDRGHLKVVQHLIE 258
N+N +DE+G LHW +L++V+HL++
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNK 25
+A V+ D TG SKG+GFV+F NK
Sbjct: 35 DARVVKDMATGKSKGYGFVSFFNK 58
>pdb|3PL6|B Chain B, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 202
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV------KK 58
V FD + G+ + VT Q + V + +++ VLEG+R S+ HN +V ++
Sbjct: 40 VRFDSDVGVYRA---VTPQGR-PVAEYWNSQKEVLEGARASVDRVCRHNYEVAYRGILQR 95
Query: 59 KIETKETASFSRMAENMEDRFNQAC---DYLPSLVK 91
++E T S SR E + C D+ PS +K
Sbjct: 96 RVEPTVTISPSR-TEALNHHNLLICSVTDFYPSQIK 130
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSI 46
++ VM+D TG S+G+GFV+F ++ +A + + S L G L I
Sbjct: 115 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49
D T KGF FVTF E K ++ D V +G L + PS
Sbjct: 43 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHV--LEGSRLSIQPSDS 51
TG +GFGFV F K+ K F+ H L G RL ++ +DS
Sbjct: 53 GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSI 46
++ VM+D TG S+G+GFV+F ++ +A + + S L G L I
Sbjct: 29 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75
>pdb|4EPA|A Chain A, The Crystal Structure Of The Ferric Yersiniabactin Uptake
Receptor Fyua From Yersinia Pestis
Length = 655
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 24 NKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENM 75
N + F+ DS + G+R+ P S V I+T+ A R+A N+
Sbjct: 528 NGNVIRSEFTNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALXPRLAVNL 579
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNK 25
+A V+ D TG SKG+GFV+F NK
Sbjct: 44 DARVVKDMATGKSKGYGFVSFYNK 67
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++N D + LHWA + H +VV+ LI K GADV+
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVH 127
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQPSDSHN 53
++A V DK T LSK FGFV++ N A + S + + RL +Q S N
Sbjct: 53 VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 8 DKNTGLSKGFGFVTFQNKE 26
DK TG SKGF F++F +E
Sbjct: 50 DKTTGQSKGFAFISFHRRE 68
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In
Cytotoxic Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNK 25
+A V+ D TG SKG+GFV+F NK
Sbjct: 44 DARVVKDMATGKSKGYGFVSFFNK 67
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQN----KEAVDKVFSTDSHVLEGSRLSI 46
+ S+++D+ + S+GF FV F+N KEA ++ + L+G R+ +
Sbjct: 41 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGRRIRV 86
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain
Of Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
D T +GF F+TF+ +E V K+ H + S+ I+
Sbjct: 34 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter
Pylori
Length = 90
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNK---EAVDKVFSTD 35
N +++D+ T KGFGFV Q + EA+ K+ +TD
Sbjct: 29 FNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTD 66
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQN----KEAVDKVFSTDSHVLEGSRLSIQPSDS 51
+ S+++D+ + S+GF FV F+N KEA ++ + L+G R+ + S
Sbjct: 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGRRIRVSGPSS 94
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
D T +GF F+TF+ +E V K+ H + S+ I+
Sbjct: 36 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 75
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQN----KEAVDKVFSTDSHVLEGSRLSI 46
+ S+++D+ + S+GF FV F+N KEA ++ + L+G R+ +
Sbjct: 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGRRIRV 89
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 184 KGWVNVSSMINDESQLDDNEKNIYEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLH 242
K ++ + IN ++ + D+ Y +A +G+ ++L L K ++N+ + G N L
Sbjct: 56 KALIDRGADINLQNSISDSP---YLYAGAQGRTEILAYML-KHATPDLNKHNRYGGNALI 111
Query: 243 WACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE----------HTDLIEYLVN 292
A ++GH+ V+ L+E D+ D D+G Y IE + D+++ L+
Sbjct: 112 PAAEKGHIDNVKLLLEDGREDI---DFQNDFG--YTALIEAVGLREGNQLYQDIVKLLME 166
Query: 293 SGAHSS 298
+GA S
Sbjct: 167 NGADQS 172
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLE--GSRLSIQPSD 50
+M +K++G S+GF FV F + + + + H L G ++S+ SD
Sbjct: 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 14 SKGFGFVTFQNKEAVDKVF-STDSHVLEGSRLSI 46
SKGFGFVTF+N D+ V+EG ++ +
Sbjct: 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 14 SKGFGFVTFQNKEAVDKVF-STDSHVLEGSRLSI 46
SKGFGFVTF+N D+ V+EG ++ +
Sbjct: 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKE 26
+++D+ TG KG+GF +Q++E
Sbjct: 40 LVYDRETGKPKGYGFCEYQDQE 61
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQN----KEAVDKVFSTDSHVLEGSRLSI 46
+ S+++D+ + S+GF FV F+N KEA ++ + L+G R+ +
Sbjct: 75 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGRRIRV 120
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 33/127 (25%)
Query: 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKL------------KDFNINQLDENGLNCLHWA 244
S L E I EW KEG VK++ L KD+ ++ L +NGL LH
Sbjct: 12 SGLPYTENEILEWRKEG-----VKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIP 66
Query: 245 CDRG-------HLKVVQHLI-EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY------- 289
G L +++ L+ EK G V+ G G A + T+ +E
Sbjct: 67 IPDGGVPSDSQFLTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEV 126
Query: 290 -LVNSGA 295
LV GA
Sbjct: 127 RLVRPGA 133
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 33/127 (25%)
Query: 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKL------------KDFNINQLDENGLNCLHWA 244
S L E I EW KEG VK++ L KD+ ++ L +NGL LH
Sbjct: 12 SGLPYTENEILEWRKEG-----VKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIP 66
Query: 245 CDRG-------HLKVVQHLI-EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY------- 289
G L +++ L+ EK G V+ G G A + T+ +E
Sbjct: 67 IPDGGVPSDSQFLTIMKWLLSEKEGNLVHSVGGIGRTGTILASYLILTEGLEVESAIDEV 126
Query: 290 -LVNSGA 295
LV GA
Sbjct: 127 RLVRPGA 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,008,495
Number of Sequences: 62578
Number of extensions: 373649
Number of successful extensions: 1002
Number of sequences better than 100.0: 171
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 282
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)