Query psy633
Match_columns 300
No_of_seqs 473 out of 3850
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 23:39:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412|consensus 99.9 1.9E-25 4.1E-30 169.6 8.7 153 142-299 10-167 (226)
2 KOG4412|consensus 99.9 1.4E-23 3.1E-28 159.5 6.0 102 199-300 34-135 (226)
3 PTZ00458 acyl CoA binding prot 99.9 6.4E-23 1.4E-27 141.4 8.4 84 77-160 3-88 (90)
4 cd00435 ACBP Acyl CoA binding 99.9 5.3E-22 1.2E-26 136.7 8.2 83 76-158 2-84 (85)
5 KOG0817|consensus 99.8 1.1E-20 2.5E-25 140.8 7.6 87 74-160 4-90 (142)
6 PF00887 ACBP: Acyl CoA bindin 99.8 8.6E-21 1.9E-25 132.7 5.4 84 75-158 1-86 (87)
7 PHA02791 ankyrin-like protein; 99.8 3E-20 6.6E-25 158.4 9.8 148 142-299 68-222 (284)
8 COG4281 ACB Acyl-CoA-binding p 99.8 1.1E-19 2.3E-24 116.5 7.1 84 75-158 2-85 (87)
9 PF12796 Ank_2: Ankyrin repeat 99.8 8.3E-19 1.8E-23 124.2 11.2 88 207-300 1-88 (89)
10 KOG0509|consensus 99.8 6.3E-20 1.4E-24 164.2 5.9 151 142-299 85-240 (600)
11 PHA02875 ankyrin repeat protei 99.8 3.8E-19 8.2E-24 161.3 10.7 149 142-298 42-195 (413)
12 PHA02859 ankyrin repeat protei 99.8 5.4E-19 1.2E-23 145.1 10.4 151 139-300 25-188 (209)
13 KOG0509|consensus 99.8 2.4E-19 5.1E-24 160.5 8.2 151 141-299 50-206 (600)
14 KOG0508|consensus 99.8 4.9E-20 1.1E-24 159.1 3.7 155 142-298 49-210 (615)
15 PHA02743 Viral ankyrin protein 99.8 1.3E-18 2.8E-23 137.7 11.0 102 197-299 51-156 (166)
16 PHA02791 ankyrin-like protein; 99.8 7.1E-19 1.5E-23 150.0 10.0 147 141-299 36-188 (284)
17 PHA02736 Viral ankyrin protein 99.8 1.7E-19 3.8E-24 141.2 5.0 127 172-299 15-154 (154)
18 PHA02875 ankyrin repeat protei 99.8 9.8E-19 2.1E-23 158.6 9.6 152 141-299 74-230 (413)
19 PHA02741 hypothetical protein; 99.8 1.2E-18 2.5E-23 138.5 8.7 123 173-296 20-157 (169)
20 PHA02859 ankyrin repeat protei 99.8 1E-18 2.2E-23 143.5 8.6 123 175-299 22-153 (209)
21 KOG0514|consensus 99.8 1.5E-18 3.3E-23 145.5 9.2 163 129-299 225-402 (452)
22 KOG0508|consensus 99.8 8.8E-19 1.9E-23 151.4 7.7 157 141-300 10-179 (615)
23 PHA02795 ankyrin-like protein; 99.8 2E-18 4.2E-23 153.2 9.1 145 145-299 128-290 (437)
24 PHA02874 ankyrin repeat protei 99.8 2.7E-18 5.8E-23 156.7 9.9 150 142-299 42-218 (434)
25 KOG0502|consensus 99.8 1.6E-18 3.4E-23 136.1 6.4 102 196-299 153-254 (296)
26 KOG0195|consensus 99.7 4.5E-18 9.8E-23 138.7 9.0 101 197-299 28-128 (448)
27 KOG0512|consensus 99.7 5.9E-18 1.3E-22 128.1 8.6 94 196-291 90-184 (228)
28 PHA02878 ankyrin repeat protei 99.7 5.8E-18 1.3E-22 156.2 9.9 142 149-299 148-295 (477)
29 KOG0510|consensus 99.7 2.8E-18 6.1E-23 156.9 6.6 161 138-299 235-405 (929)
30 PHA02741 hypothetical protein; 99.7 2.5E-17 5.4E-22 130.8 10.9 101 198-299 16-127 (169)
31 PLN03192 Voltage-dependent pot 99.7 2.9E-17 6.3E-22 160.4 13.2 148 142-299 532-683 (823)
32 PHA03100 ankyrin repeat protei 99.7 9.7E-18 2.1E-22 155.0 9.3 98 199-298 172-277 (480)
33 PHA02874 ankyrin repeat protei 99.7 2E-17 4.4E-22 150.9 10.2 151 142-299 8-185 (434)
34 PHA03100 ankyrin repeat protei 99.7 1.5E-17 3.2E-22 153.9 9.0 150 142-299 42-204 (480)
35 KOG4177|consensus 99.7 2E-17 4.3E-22 159.5 10.1 150 142-299 447-601 (1143)
36 KOG4214|consensus 99.7 3.4E-17 7.4E-22 111.0 7.4 89 207-299 6-95 (117)
37 PHA02716 CPXV016; CPX019; EVM0 99.7 4E-17 8.7E-22 154.2 9.9 147 146-299 153-347 (764)
38 PHA02884 ankyrin repeat protei 99.7 1.3E-16 2.8E-21 136.3 12.0 88 202-291 69-157 (300)
39 PHA02878 ankyrin repeat protei 99.7 1E-16 2.2E-21 148.0 12.2 101 197-299 161-263 (477)
40 KOG0512|consensus 99.7 2E-16 4.4E-21 119.9 9.5 92 206-299 67-158 (228)
41 PHA03095 ankyrin-like protein; 99.7 9.4E-17 2E-21 148.1 9.4 143 148-298 167-317 (471)
42 PHA02716 CPXV016; CPX019; EVM0 99.7 1.2E-16 2.5E-21 151.1 9.7 144 148-299 192-394 (764)
43 PHA02798 ankyrin-like protein; 99.7 4.3E-16 9.4E-21 144.2 12.4 99 198-298 104-213 (489)
44 PHA02743 Viral ankyrin protein 99.7 3E-16 6.5E-21 124.1 9.7 98 200-299 17-123 (166)
45 PHA03095 ankyrin-like protein; 99.7 5.9E-16 1.3E-20 142.8 13.0 145 147-299 26-182 (471)
46 PHA02795 ankyrin-like protein; 99.7 2.4E-16 5.3E-21 139.9 8.7 157 142-300 84-250 (437)
47 PHA02946 ankyin-like protein; 99.7 6.3E-16 1.4E-20 140.8 11.6 124 173-299 71-203 (446)
48 PHA02876 ankyrin repeat protei 99.7 4.7E-16 1E-20 149.6 10.9 101 197-299 369-471 (682)
49 PHA02946 ankyin-like protein; 99.6 3.9E-16 8.4E-21 142.2 9.0 149 141-299 78-237 (446)
50 PHA02884 ankyrin repeat protei 99.6 8.2E-16 1.8E-20 131.3 9.6 95 203-299 33-132 (300)
51 KOG4177|consensus 99.6 2.7E-16 5.8E-21 151.9 7.0 148 142-297 481-632 (1143)
52 PF13637 Ank_4: Ankyrin repeat 99.6 7E-16 1.5E-20 98.1 6.5 54 237-291 1-54 (54)
53 PHA02736 Viral ankyrin protein 99.6 5E-16 1.1E-20 121.5 5.9 100 197-299 11-121 (154)
54 PHA02876 ankyrin repeat protei 99.6 2E-15 4.3E-20 145.3 10.9 124 173-298 272-402 (682)
55 KOG0510|consensus 99.6 1.1E-15 2.4E-20 140.2 8.5 155 142-298 194-368 (929)
56 PHA02798 ankyrin-like protein; 99.6 2.4E-15 5.2E-20 139.2 10.7 91 147-244 88-189 (489)
57 PHA02989 ankyrin repeat protei 99.6 2.2E-15 4.7E-20 139.7 10.1 101 197-299 102-213 (494)
58 KOG0502|consensus 99.6 2.3E-15 5E-20 118.4 8.5 119 177-299 99-221 (296)
59 PHA02917 ankyrin-like protein; 99.6 1.9E-15 4.2E-20 143.1 9.6 148 144-299 44-224 (661)
60 PHA02989 ankyrin repeat protei 99.6 2.9E-15 6.3E-20 138.9 9.4 97 198-297 213-315 (494)
61 PF13857 Ank_5: Ankyrin repeat 99.6 1.3E-15 2.9E-20 97.4 4.3 51 227-278 6-56 (56)
62 PHA02917 ankyrin-like protein; 99.6 8.1E-15 1.7E-19 138.9 10.9 118 178-298 107-257 (661)
63 KOG0514|consensus 99.6 5.7E-15 1.2E-19 124.2 8.3 93 199-292 336-428 (452)
64 PHA02730 ankyrin-like protein; 99.6 1.3E-14 2.9E-19 134.9 11.4 142 148-298 359-525 (672)
65 KOG0515|consensus 99.6 6.7E-15 1.4E-19 129.0 8.4 89 206-297 554-642 (752)
66 PHA02730 ankyrin-like protein; 99.5 2.9E-14 6.2E-19 132.7 10.9 99 198-298 36-144 (672)
67 PLN03192 Voltage-dependent pot 99.5 4.4E-14 9.5E-19 138.2 11.5 120 176-299 527-650 (823)
68 TIGR00870 trp transient-recept 99.5 1.6E-14 3.5E-19 140.2 7.6 153 141-299 23-203 (743)
69 PTZ00322 6-phosphofructo-2-kin 99.5 8.9E-14 1.9E-18 132.5 11.5 90 206-298 86-182 (664)
70 KOG0195|consensus 99.5 1.3E-14 2.8E-19 118.7 4.1 123 174-298 34-160 (448)
71 KOG0148|consensus 99.5 5E-14 1.1E-18 113.7 5.3 104 2-117 91-200 (321)
72 cd00204 ANK ankyrin repeats; 99.5 9.3E-13 2E-17 98.4 12.0 97 200-298 4-100 (126)
73 KOG0505|consensus 99.4 5.4E-14 1.2E-18 124.0 3.8 149 142-299 80-259 (527)
74 PF12796 Ank_2: Ankyrin repeat 99.4 8.2E-14 1.8E-18 98.4 4.0 64 203-268 26-89 (89)
75 KOG0505|consensus 99.4 1.7E-13 3.7E-18 120.8 6.6 95 202-299 40-134 (527)
76 KOG0507|consensus 99.4 1.6E-13 3.4E-18 125.4 5.7 99 197-297 43-141 (854)
77 PHA02792 ankyrin-like protein; 99.4 7.8E-13 1.7E-17 122.1 10.0 142 147-298 320-480 (631)
78 COG0666 Arp FOG: Ankyrin repea 99.4 2.3E-12 4.9E-17 106.5 11.3 95 197-293 100-202 (235)
79 PHA02792 ankyrin-like protein; 99.4 2.3E-12 5E-17 119.0 10.6 95 203-299 339-438 (631)
80 TIGR00870 trp transient-recept 99.4 7.9E-13 1.7E-17 128.5 6.5 144 142-297 60-243 (743)
81 KOG0507|consensus 99.4 2.7E-12 5.8E-17 117.4 9.1 165 121-300 42-218 (854)
82 KOG1710|consensus 99.3 5.5E-12 1.2E-16 103.3 9.1 96 194-291 36-132 (396)
83 PF13637 Ank_4: Ankyrin repeat 99.3 5E-12 1.1E-16 80.2 6.3 54 203-257 1-54 (54)
84 COG0666 Arp FOG: Ankyrin repea 99.3 1.1E-11 2.3E-16 102.5 9.2 99 198-299 68-175 (235)
85 KOG0515|consensus 99.3 5.7E-12 1.2E-16 110.9 7.7 94 196-291 576-672 (752)
86 cd00204 ANK ankyrin repeats; 99.3 1.2E-11 2.6E-16 92.3 8.1 116 174-291 7-126 (126)
87 TIGR01659 sex-lethal sex-letha 99.3 5.2E-12 1.1E-16 110.6 6.9 90 2-114 136-226 (346)
88 KOG0145|consensus 99.2 1E-11 2.2E-16 100.0 5.5 93 1-116 69-162 (360)
89 KOG1710|consensus 99.2 3.8E-11 8.2E-16 98.5 8.5 98 199-299 9-107 (396)
90 KOG0506|consensus 99.2 1.6E-11 3.5E-16 106.7 5.3 87 205-293 509-595 (622)
91 KOG0818|consensus 99.2 7.6E-11 1.6E-15 103.1 9.0 84 207-293 137-222 (669)
92 KOG4214|consensus 99.2 4.9E-11 1.1E-15 81.3 6.1 76 201-278 32-107 (117)
93 KOG0131|consensus 99.2 2.4E-11 5.2E-16 92.9 4.9 91 1-113 37-128 (203)
94 PF13606 Ank_3: Ankyrin repeat 99.2 3.3E-11 7.2E-16 66.0 4.0 30 270-299 1-30 (30)
95 PF13857 Ank_5: Ankyrin repeat 99.2 2.4E-11 5.1E-16 77.6 3.6 44 256-300 1-45 (56)
96 TIGR01645 half-pint poly-U bin 99.2 6.2E-11 1.4E-15 109.6 7.6 100 2-113 136-236 (612)
97 KOG0149|consensus 99.2 3.4E-11 7.3E-16 95.9 4.6 50 1-50 40-89 (247)
98 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 6.1E-11 1.3E-15 105.4 6.8 89 2-113 32-121 (352)
99 PLN03134 glycine-rich RNA-bind 99.1 6.8E-11 1.5E-15 90.7 5.9 53 2-54 63-116 (144)
100 KOG0125|consensus 99.1 4.8E-11 1E-15 99.2 4.5 57 1-59 124-181 (376)
101 KOG4205|consensus 99.1 2.6E-11 5.7E-16 103.2 2.8 92 1-111 34-127 (311)
102 KOG0117|consensus 99.1 1.3E-10 2.7E-15 100.5 6.6 50 2-51 112-163 (506)
103 KOG3676|consensus 99.1 3.9E-10 8.4E-15 104.6 8.4 94 201-296 182-298 (782)
104 KOG4369|consensus 99.0 6.8E-11 1.5E-15 112.2 2.5 130 169-300 752-886 (2131)
105 smart00361 RRM_1 RNA recogniti 99.0 5.3E-10 1.1E-14 74.9 5.7 42 5-46 25-69 (70)
106 KOG0705|consensus 99.0 7.1E-10 1.5E-14 98.8 7.9 96 201-297 623-720 (749)
107 PTZ00322 6-phosphofructo-2-kin 99.0 9.4E-10 2E-14 105.1 8.8 81 197-279 109-196 (664)
108 PF00023 Ank: Ankyrin repeat H 99.0 4.4E-10 9.6E-15 63.3 3.9 30 270-299 1-30 (33)
109 PF13606 Ank_3: Ankyrin repeat 99.0 5.8E-10 1.3E-14 61.1 3.7 30 236-266 1-30 (30)
110 TIGR01628 PABP-1234 polyadenyl 99.0 1E-09 2.3E-14 103.5 7.8 91 2-113 29-120 (562)
111 KOG3676|consensus 99.0 1.3E-09 2.9E-14 101.1 8.0 90 202-293 239-330 (782)
112 TIGR01622 SF-CC1 splicing fact 99.0 1.4E-09 3E-14 100.1 7.1 102 2-114 118-219 (457)
113 KOG0111|consensus 98.9 3.5E-10 7.5E-15 89.0 2.5 52 2-53 39-91 (298)
114 PF00023 Ank: Ankyrin repeat H 98.9 1.5E-09 3.2E-14 61.2 4.4 33 236-269 1-33 (33)
115 KOG0127|consensus 98.9 1.5E-09 3.2E-14 96.1 4.9 112 2-113 34-149 (678)
116 KOG4369|consensus 98.9 1.1E-09 2.4E-14 104.2 3.1 150 143-299 798-987 (2131)
117 KOG0522|consensus 98.8 8.4E-09 1.8E-13 91.5 7.6 87 205-292 22-109 (560)
118 KOG4207|consensus 98.8 3.2E-09 7E-14 82.9 3.4 50 2-51 42-92 (256)
119 KOG0783|consensus 98.8 1.8E-09 3.9E-14 100.1 2.4 83 196-280 45-128 (1267)
120 TIGR01628 PABP-1234 polyadenyl 98.8 1.6E-08 3.6E-13 95.4 7.4 93 2-113 117-210 (562)
121 KOG0144|consensus 98.8 1.9E-08 4E-13 86.9 6.6 90 2-113 63-156 (510)
122 TIGR01648 hnRNP-R-Q heterogene 98.8 1.5E-08 3.3E-13 93.8 6.5 75 2-106 87-163 (578)
123 KOG0124|consensus 98.7 2.1E-08 4.6E-13 84.8 6.3 94 2-111 142-240 (544)
124 KOG0783|consensus 98.7 1.7E-08 3.8E-13 93.7 4.0 80 218-298 33-113 (1267)
125 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.6 6.5E-08 1.4E-12 86.0 6.8 51 2-52 118-171 (352)
126 TIGR01645 half-pint poly-U bin 98.6 6.3E-08 1.4E-12 90.0 6.1 51 2-52 233-284 (612)
127 KOG0511|consensus 98.6 8.2E-08 1.8E-12 81.9 6.1 62 209-273 43-104 (516)
128 KOG0226|consensus 98.6 2.7E-08 5.8E-13 80.3 2.7 53 3-55 220-273 (290)
129 KOG2384|consensus 98.6 2.2E-07 4.8E-12 72.1 6.9 69 227-296 2-71 (223)
130 KOG0108|consensus 98.5 1E-07 2.3E-12 85.0 5.1 53 2-54 47-100 (435)
131 KOG0123|consensus 98.5 1.5E-07 3.3E-12 83.1 6.1 87 1-118 26-113 (369)
132 KOG4205|consensus 98.5 3.9E-08 8.5E-13 84.0 2.3 57 2-58 126-182 (311)
133 PF00076 RRM_1: RNA recognitio 98.5 2.4E-07 5.1E-12 61.7 4.9 43 2-45 27-70 (70)
134 KOG0113|consensus 98.5 2.5E-07 5.4E-12 76.5 5.3 50 2-51 130-180 (335)
135 TIGR01648 hnRNP-R-Q heterogene 98.5 2.7E-07 5.9E-12 85.6 6.2 85 8-110 175-264 (578)
136 KOG0520|consensus 98.5 1.3E-07 2.8E-12 90.4 4.0 97 200-297 571-667 (975)
137 smart00360 RRM RNA recognition 98.4 5.1E-07 1.1E-11 59.7 5.8 46 2-47 25-71 (71)
138 KOG0126|consensus 98.4 5.7E-08 1.2E-12 74.6 1.1 50 1-50 63-113 (219)
139 PF14259 RRM_6: RNA recognitio 98.4 4.6E-07 1E-11 60.5 4.7 43 2-45 27-70 (70)
140 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 5.3E-07 1.1E-11 83.4 6.7 101 2-107 305-420 (481)
141 TIGR01659 sex-lethal sex-letha 98.4 4.5E-07 9.8E-12 79.7 5.5 51 2-52 222-275 (346)
142 TIGR01642 U2AF_lg U2 snRNP aux 98.4 4.4E-07 9.5E-12 84.8 5.6 105 6-110 214-324 (509)
143 KOG0123|consensus 98.4 7.3E-07 1.6E-11 78.9 6.7 98 1-116 104-202 (369)
144 KOG0782|consensus 98.3 8.8E-07 1.9E-11 79.4 6.2 92 200-292 896-988 (1004)
145 KOG0782|consensus 98.3 1.2E-06 2.6E-11 78.6 6.6 94 202-298 866-961 (1004)
146 KOG0520|consensus 98.3 5.2E-07 1.1E-11 86.4 4.6 95 197-293 602-702 (975)
147 PLN03120 nucleic acid binding 98.3 9.8E-07 2.1E-11 73.0 5.3 47 2-51 33-79 (260)
148 KOG3609|consensus 98.3 2.2E-06 4.7E-11 80.6 7.6 94 204-298 27-158 (822)
149 KOG0521|consensus 98.3 8.2E-07 1.8E-11 85.2 4.8 88 202-291 655-742 (785)
150 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.2 2E-06 4.4E-11 79.5 6.7 90 14-114 37-129 (481)
151 PLN03213 repressor of silencin 98.2 1.2E-06 2.7E-11 77.1 4.8 47 2-52 39-88 (759)
152 PF13893 RRM_5: RNA recognitio 98.2 1.8E-06 3.9E-11 54.9 4.2 35 15-49 21-56 (56)
153 KOG0110|consensus 98.2 1.4E-06 3E-11 80.0 4.4 86 14-114 559-646 (725)
154 TIGR01642 U2AF_lg U2 snRNP aux 98.2 2.2E-06 4.8E-11 80.1 6.0 51 2-52 324-375 (509)
155 KOG4208|consensus 98.2 1.6E-06 3.4E-11 68.2 3.8 49 3-51 80-129 (214)
156 TIGR01622 SF-CC1 splicing fact 98.2 2.5E-06 5.5E-11 78.6 5.5 49 2-50 215-264 (457)
157 KOG3878|consensus 98.2 5.1E-06 1.1E-10 69.7 6.5 93 68-160 25-123 (469)
158 KOG0131|consensus 98.2 1.3E-06 2.9E-11 67.2 2.9 51 4-54 128-179 (203)
159 KOG0127|consensus 98.1 2.5E-06 5.4E-11 76.2 4.4 51 2-53 146-197 (678)
160 smart00362 RRM_2 RNA recogniti 98.1 7E-06 1.5E-10 54.3 5.4 44 2-47 28-72 (72)
161 KOG0147|consensus 98.1 2.8E-06 6E-11 76.0 4.0 52 2-53 307-359 (549)
162 COG0724 RNA-binding proteins ( 98.1 5.8E-06 1.3E-10 70.4 5.7 105 2-109 144-253 (306)
163 PLN03121 nucleic acid binding 98.0 1.1E-05 2.5E-10 65.7 5.2 46 2-50 34-79 (243)
164 KOG0705|consensus 97.9 2.2E-05 4.7E-10 70.9 5.8 64 198-263 656-719 (749)
165 KOG0521|consensus 97.9 7E-06 1.5E-10 79.0 3.0 72 227-299 644-717 (785)
166 KOG0818|consensus 97.9 2.7E-05 5.8E-10 69.0 6.2 67 232-299 122-195 (669)
167 KOG0511|consensus 97.8 9.4E-05 2E-09 63.7 8.5 58 238-296 37-94 (516)
168 KOG0147|consensus 97.8 2.3E-05 5.1E-10 70.2 4.8 106 2-116 208-313 (549)
169 cd00590 RRM RRM (RNA recogniti 97.8 6.3E-05 1.4E-09 49.9 5.6 45 2-47 28-73 (74)
170 KOG0506|consensus 97.8 1.8E-05 3.9E-10 69.8 3.5 63 235-298 504-567 (622)
171 KOG0144|consensus 97.8 3E-05 6.5E-10 67.5 4.5 56 1-57 152-211 (510)
172 KOG4212|consensus 97.8 2.8E-05 6E-10 67.8 4.1 46 3-49 75-121 (608)
173 KOG0121|consensus 97.7 4.4E-05 9.6E-10 55.5 4.4 46 4-49 67-113 (153)
174 KOG0130|consensus 97.7 2.1E-05 4.7E-10 57.6 2.5 52 2-53 101-153 (170)
175 KOG0107|consensus 97.7 2.4E-05 5.2E-10 60.0 2.8 40 13-52 45-85 (195)
176 smart00248 ANK ankyrin repeats 97.7 9.2E-05 2E-09 39.1 4.1 28 271-298 2-29 (30)
177 KOG0109|consensus 97.6 5.4E-05 1.2E-09 62.7 3.5 73 15-112 36-109 (346)
178 KOG0117|consensus 97.6 0.00011 2.4E-09 64.4 5.5 92 2-111 194-289 (506)
179 KOG0145|consensus 97.5 0.00012 2.7E-09 59.7 4.0 47 4-50 158-207 (360)
180 KOG0522|consensus 97.5 0.00026 5.6E-09 63.6 6.3 61 197-258 49-109 (560)
181 KOG0415|consensus 97.4 0.00017 3.6E-09 61.5 3.5 51 1-51 267-318 (479)
182 PF04059 RRM_2: RNA recognitio 97.3 0.00041 9E-09 48.9 4.6 38 3-40 33-71 (97)
183 smart00248 ANK ankyrin repeats 97.3 0.00044 9.6E-09 36.2 3.8 29 236-265 1-29 (30)
184 KOG2384|consensus 97.3 0.00063 1.4E-08 53.3 5.9 76 196-273 5-81 (223)
185 KOG0124|consensus 97.3 0.00024 5.2E-09 60.7 3.8 50 1-50 238-288 (544)
186 KOG4209|consensus 97.3 0.0003 6.5E-09 58.2 4.2 48 3-50 131-178 (231)
187 KOG2505|consensus 97.3 0.00057 1.2E-08 61.0 5.9 65 213-279 401-471 (591)
188 KOG4211|consensus 97.2 0.00051 1.1E-08 61.1 5.1 94 5-111 39-133 (510)
189 KOG0148|consensus 97.2 0.00063 1.4E-08 56.0 4.7 45 2-52 193-238 (321)
190 KOG0110|consensus 96.8 0.00091 2E-08 62.1 3.0 42 10-51 4-46 (725)
191 KOG4206|consensus 96.4 0.01 2.2E-07 47.9 5.9 45 10-54 47-92 (221)
192 KOG4661|consensus 96.2 0.0049 1.1E-07 56.0 3.9 49 2-50 434-483 (940)
193 KOG0114|consensus 95.9 0.017 3.7E-07 40.7 4.6 44 10-53 52-96 (124)
194 KOG0105|consensus 95.3 0.067 1.4E-06 41.9 6.1 97 13-125 43-159 (241)
195 KOG2505|consensus 95.0 0.04 8.6E-07 49.7 4.8 49 250-299 404-458 (591)
196 KOG0109|consensus 94.9 0.018 4E-07 48.1 2.5 44 14-57 111-155 (346)
197 PF06128 Shigella_OspC: Shigel 94.8 0.17 3.7E-06 41.2 7.5 91 204-297 180-280 (284)
198 KOG0106|consensus 94.3 0.023 4.9E-07 46.2 1.5 88 14-112 34-130 (216)
199 KOG1995|consensus 94.2 0.033 7.1E-07 48.0 2.5 52 2-53 103-155 (351)
200 KOG3609|consensus 93.9 0.24 5.1E-06 47.8 7.5 62 203-267 89-160 (822)
201 KOG1457|consensus 93.4 0.14 3.1E-06 41.3 4.5 45 8-52 70-118 (284)
202 KOG0146|consensus 93.2 0.17 3.7E-06 42.0 4.8 48 2-50 48-99 (371)
203 KOG0153|consensus 92.6 0.1 2.2E-06 44.9 2.8 38 14-51 263-302 (377)
204 KOG4210|consensus 92.3 0.061 1.3E-06 46.1 1.2 53 2-54 214-266 (285)
205 KOG1548|consensus 92.1 0.2 4.3E-06 43.2 3.9 47 3-50 172-219 (382)
206 KOG1548|consensus 91.9 0.32 7E-06 41.9 4.9 47 4-53 306-353 (382)
207 KOG4211|consensus 91.5 0.18 3.8E-06 45.5 3.1 47 3-50 134-180 (510)
208 KOG4454|consensus 91.4 0.15 3.3E-06 41.1 2.4 45 3-49 39-84 (267)
209 KOG2314|consensus 91.4 0.24 5.2E-06 45.4 3.9 38 3-41 94-132 (698)
210 KOG0120|consensus 91.3 0.14 3E-06 47.0 2.3 50 4-53 320-370 (500)
211 KOG4210|consensus 91.3 0.26 5.6E-06 42.3 3.9 101 5-118 120-222 (285)
212 PF11608 Limkain-b1: Limkain b 90.8 0.44 9.4E-06 32.5 3.7 37 14-50 38-75 (90)
213 PF11929 DUF3447: Domain of un 90.5 0.66 1.4E-05 31.1 4.6 19 240-258 35-53 (76)
214 KOG0116|consensus 90.5 0.21 4.5E-06 45.1 2.7 40 12-51 327-366 (419)
215 PF08952 DUF1866: Domain of un 89.6 0.38 8.2E-06 36.5 3.1 34 18-51 73-106 (146)
216 KOG0106|consensus 89.2 0.2 4.3E-06 40.8 1.4 36 14-49 132-168 (216)
217 KOG1190|consensus 88.2 1.2 2.5E-05 39.5 5.4 101 3-108 328-441 (492)
218 KOG1365|consensus 86.8 1.6 3.5E-05 38.4 5.4 93 10-109 97-189 (508)
219 PF03158 DUF249: Multigene fam 86.6 1.6 3.4E-05 34.5 4.8 47 239-292 145-191 (192)
220 KOG0132|consensus 86.3 0.68 1.5E-05 44.3 3.2 41 13-53 455-496 (894)
221 KOG4849|consensus 86.1 0.7 1.5E-05 39.9 2.9 47 3-49 112-159 (498)
222 KOG1365|consensus 85.7 0.42 9.2E-06 41.8 1.4 100 8-107 199-306 (508)
223 KOG0128|consensus 85.4 0.6 1.3E-05 45.1 2.4 65 8-111 702-766 (881)
224 KOG0533|consensus 85.3 1.3 2.8E-05 37.0 4.0 47 5-52 115-162 (243)
225 PF07292 NID: Nmi/IFP 35 domai 83.2 0.28 6E-06 33.9 -0.6 69 18-105 1-76 (88)
226 KOG0120|consensus 81.1 2.5 5.4E-05 39.0 4.5 48 2-49 438-489 (500)
227 KOG2202|consensus 81.0 0.92 2E-05 37.6 1.5 39 11-49 106-145 (260)
228 PF00373 FERM_M: FERM central 80.3 5.1 0.00011 29.3 5.4 79 76-154 12-118 (126)
229 KOG1996|consensus 77.1 2.4 5.2E-05 35.9 2.8 31 18-48 332-363 (378)
230 KOG0114|consensus 76.3 1.7 3.7E-05 30.9 1.5 25 85-109 22-46 (124)
231 COG5175 MOT2 Transcriptional r 75.4 2.7 5.9E-05 36.3 2.8 34 19-52 169-203 (480)
232 PF05172 Nup35_RRM: Nup53/35/4 74.1 3.8 8.2E-05 29.2 2.9 35 15-49 54-89 (100)
233 KOG2193|consensus 72.9 2.6 5.6E-05 37.6 2.1 71 15-110 37-109 (584)
234 KOG4660|consensus 70.3 6 0.00013 36.6 3.9 37 3-39 419-456 (549)
235 smart00295 B41 Band 4.1 homolo 69.1 19 0.0004 28.9 6.4 80 75-154 99-199 (207)
236 PF11929 DUF3447: Domain of un 67.7 16 0.00035 24.3 4.8 48 238-293 7-54 (76)
237 PF00076 RRM_1: RNA recognitio 66.5 4.3 9.4E-05 25.9 1.8 30 85-114 2-31 (70)
238 KOG0129|consensus 66.0 7.9 0.00017 35.6 3.7 46 4-49 402-451 (520)
239 KOG4660|consensus 66.0 3.3 7.1E-05 38.3 1.4 39 7-45 104-143 (549)
240 PF03880 DbpA: DbpA RNA bindin 64.4 6.4 0.00014 26.1 2.3 33 16-49 41-74 (74)
241 PF08206 OB_RNB: Ribonuclease 60.1 6.9 0.00015 24.6 1.7 12 13-24 6-17 (58)
242 KOG0151|consensus 56.8 8.8 0.00019 36.8 2.5 43 8-50 212-255 (877)
243 PRK09937 stationary phase/star 56.8 6.7 0.00014 26.2 1.3 12 13-24 11-22 (74)
244 PRK14998 cold shock-like prote 56.5 6.5 0.00014 26.1 1.2 12 13-24 11-22 (73)
245 KOG4335|consensus 54.5 13 0.00028 34.3 3.0 83 208-291 149-234 (558)
246 PRK15464 cold shock-like prote 54.4 6.7 0.00015 25.8 1.0 12 13-24 14-25 (70)
247 PRK15463 cold shock-like prote 53.1 7.5 0.00016 25.6 1.1 12 13-24 14-25 (70)
248 KOG1456|consensus 51.7 27 0.00058 30.9 4.4 36 16-51 326-362 (494)
249 TIGR02381 cspD cold shock doma 51.4 9.3 0.0002 24.9 1.3 12 13-24 11-22 (68)
250 PRK09507 cspE cold shock prote 50.9 8.9 0.00019 25.1 1.2 12 13-24 13-24 (69)
251 PRK10943 cold shock-like prote 49.8 9.2 0.0002 25.1 1.1 12 13-24 13-24 (69)
252 KOG0128|consensus 49.5 10 0.00022 37.1 1.8 47 4-51 767-814 (881)
253 PRK09890 cold shock protein Cs 48.2 9.8 0.00021 25.0 1.0 12 13-24 14-25 (70)
254 COG1278 CspC Cold shock protei 47.7 8.3 0.00018 25.1 0.6 13 13-25 11-23 (67)
255 PRK10354 RNA chaperone/anti-te 47.2 10 0.00022 24.9 1.0 10 14-23 15-24 (70)
256 PLN03134 glycine-rich RNA-bind 44.6 13 0.00027 28.4 1.3 29 85-113 38-66 (144)
257 KOG4307|consensus 43.4 9.2 0.0002 36.6 0.4 44 10-53 471-515 (944)
258 PF11767 SET_assoc: Histone ly 41.8 40 0.00088 21.9 3.1 29 16-45 35-64 (66)
259 KOG0146|consensus 41.7 22 0.00048 29.9 2.3 29 85-113 23-51 (371)
260 PF00313 CSD: 'Cold-shock' DNA 40.9 22 0.00048 22.7 1.9 12 14-25 11-22 (66)
261 KOG4212|consensus 40.8 47 0.001 30.2 4.3 43 5-48 247-290 (608)
262 cd04458 CSP_CDS Cold-Shock Pro 40.4 17 0.00036 23.2 1.2 11 14-24 11-21 (65)
263 KOG3836|consensus 39.3 6.9 0.00015 36.8 -1.0 50 244-294 403-452 (605)
264 PF06128 Shigella_OspC: Shigel 38.4 93 0.002 25.9 5.3 48 215-263 229-279 (284)
265 KOG2068|consensus 38.0 13 0.00029 32.2 0.6 38 18-55 128-166 (327)
266 KOG0129|consensus 37.0 57 0.0012 30.2 4.3 100 14-116 302-406 (520)
267 PLN03120 nucleic acid binding 36.5 23 0.00049 30.0 1.7 32 84-115 7-38 (260)
268 KOG3530|consensus 35.5 1.3E+02 0.0028 28.7 6.4 67 91-157 120-198 (616)
269 PF14605 Nup35_RRM_2: Nup53/35 33.1 55 0.0012 20.0 2.7 19 14-32 35-53 (53)
270 PF08777 RRM_3: RNA binding mo 31.9 43 0.00092 24.0 2.3 17 17-33 39-55 (105)
271 KOG1456|consensus 31.8 44 0.00095 29.7 2.7 37 17-53 161-200 (494)
272 PF02714 DUF221: Domain of unk 31.8 46 0.00099 29.1 3.0 31 18-50 1-32 (325)
273 PLN03121 nucleic acid binding 30.4 33 0.00072 28.6 1.7 31 85-115 9-39 (243)
274 KOG0226|consensus 30.1 63 0.0014 27.2 3.2 86 5-108 131-217 (290)
275 KOG3836|consensus 29.1 13 0.00028 35.0 -0.9 51 221-273 414-464 (605)
276 KOG1595|consensus 28.9 9.1 0.0002 35.4 -1.9 93 201-294 56-155 (528)
277 KOG0126|consensus 28.9 3.5 7.6E-05 32.5 -3.9 33 80-112 34-66 (219)
278 KOG2591|consensus 27.9 31 0.00066 32.3 1.2 29 19-47 216-247 (684)
279 KOG0149|consensus 27.6 35 0.00075 28.3 1.3 31 85-115 16-46 (247)
280 PF14111 DUF4283: Domain of un 25.8 39 0.00085 25.6 1.3 83 14-113 54-137 (153)
281 PLN03213 repressor of silencin 23.8 51 0.0011 30.5 1.8 70 85-154 14-96 (759)
282 KOG0107|consensus 23.4 59 0.0013 25.7 1.8 37 84-120 13-49 (195)
283 PF03158 DUF249: Multigene fam 23.4 1.6E+02 0.0035 23.5 4.3 44 207-258 147-191 (192)
284 PF04847 Calcipressin: Calcipr 23.3 80 0.0017 25.3 2.7 35 18-52 34-71 (184)
285 KOG4307|consensus 23.2 59 0.0013 31.5 2.1 37 14-50 39-75 (944)
286 PRK01178 rps24e 30S ribosomal 23.0 78 0.0017 22.5 2.2 22 9-31 60-81 (99)
287 COG1732 OpuBC Periplasmic glyc 22.9 76 0.0016 27.5 2.6 36 217-253 51-87 (300)
288 KOG0121|consensus 21.8 55 0.0012 24.5 1.3 36 73-108 28-63 (153)
289 KOG4591|consensus 21.2 71 0.0015 25.9 1.9 48 234-282 219-271 (280)
No 1
>KOG4412|consensus
Probab=99.92 E-value=1.9e-25 Score=169.63 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-C----CcccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-D----ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~----~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..|...++++...-. ...+..+++++.+++|.|++-|+..+..++. + .+..|..||||||.|+..+..
T Consensus 10 ~~~~~~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~ 85 (226)
T KOG4412|consen 10 ICENCEEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND 85 (226)
T ss_pred HHhhchHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH
Confidence 445555555555443322 2356667778899999999999985444433 2 455688999999999887666
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
++++-|....++++|..+..|.||||+|+..|+.+|+++|++ .|+.|+.+|..|.||||-|+..|.++++++|++.||.
T Consensus 86 evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~ 164 (226)
T KOG4412|consen 86 EVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP 164 (226)
T ss_pred HHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence 666666663699999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
+|.
T Consensus 165 ~n~ 167 (226)
T KOG4412|consen 165 LNT 167 (226)
T ss_pred CCc
Confidence 885
No 2
>KOG4412|consensus
Probab=99.89 E-value=1.4e-23 Score=159.48 Aligned_cols=102 Identities=26% Similarity=0.360 Sum_probs=94.2
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
.|.+|+||||||+..++.+++++|....+..+|.+|..||||||+||..|+.++|+.|+.+.|+|+|..++.|.||||||
T Consensus 34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA 113 (226)
T KOG4412|consen 34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA 113 (226)
T ss_pred ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence 34589999999999888888888885478889999999999999999999999999999955999999999999999999
Q ss_pred HhcCcHHHHHHHHHcCCCCCCC
Q psy633 279 KAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
+..|+.+|+.+|++.||.|+++
T Consensus 114 agK~r~eIaqlLle~ga~i~~k 135 (226)
T KOG4412|consen 114 AGKGRLEIAQLLLEKGALIRIK 135 (226)
T ss_pred hcCChhhHHHHHHhcCCCCccc
Confidence 9999999999999999999874
No 3
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.89 E-value=6.4e-23 Score=141.44 Aligned_cols=84 Identities=35% Similarity=0.766 Sum_probs=80.4
Q ss_pred hHHHHHhhhhccccc--CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633 77 DRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 77 ~~F~~a~~~v~~~~~--~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l 154 (300)
+.|++|+.+|++++. .++++++++||++|||+|.|+|++++||++++.+++||+||+++++|+.++||+.||++++++
T Consensus 3 ~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l 82 (90)
T PTZ00458 3 DLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIVTEL 82 (90)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 469999999998776 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCch
Q psy633 155 DAGWED 160 (300)
Q Consensus 155 ~~~~~~ 160 (300)
.+.|..
T Consensus 83 ~~~w~~ 88 (90)
T PTZ00458 83 FPNWEK 88 (90)
T ss_pred hhcccc
Confidence 999965
No 4
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.87 E-value=5.3e-22 Score=136.73 Aligned_cols=83 Identities=39% Similarity=0.748 Sum_probs=80.5
Q ss_pred hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD 155 (300)
Q Consensus 76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~ 155 (300)
+..|+.|+.+|+.++..++++++++||++|||++.|+|+.++|+++++.++.||++|.++++|+.++||+.||++++++.
T Consensus 2 ~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~ 81 (85)
T cd00435 2 QEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELI 81 (85)
T ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 156 AGW 158 (300)
Q Consensus 156 ~~~ 158 (300)
+.|
T Consensus 82 ~~~ 84 (85)
T cd00435 82 AKY 84 (85)
T ss_pred hcc
Confidence 876
No 5
>KOG0817|consensus
Probab=99.83 E-value=1.1e-20 Score=140.78 Aligned_cols=87 Identities=44% Similarity=0.775 Sum_probs=84.0
Q ss_pred hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633 74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE 153 (300)
Q Consensus 74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~ 153 (300)
-+...|+.|...++++...+++++++.||++|||+++|+|++++||++++.+++||++|+++++|+.++||+.||+++.+
T Consensus 4 ~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~ 83 (142)
T KOG0817|consen 4 TLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYVEKVEE 83 (142)
T ss_pred hHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCch
Q psy633 154 VDAGWED 160 (300)
Q Consensus 154 l~~~~~~ 160 (300)
+++.|..
T Consensus 84 l~~~~~~ 90 (142)
T KOG0817|consen 84 LIPKYGA 90 (142)
T ss_pred HHHHhhc
Confidence 9999976
No 6
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.82 E-value=8.6e-21 Score=132.68 Aligned_cols=84 Identities=38% Similarity=0.811 Sum_probs=77.0
Q ss_pred hhhHHHHHhhhhccccc--CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633 75 MEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN 152 (300)
Q Consensus 75 l~~~F~~a~~~v~~~~~--~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~ 152 (300)
|++.|+.|+.+++.++. .+++++.++||++|||+++|+|+.++|+++++.++.||++|.++++|+.++||+.||++++
T Consensus 1 Le~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~ 80 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVE 80 (87)
T ss_dssp HHHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 57899999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q psy633 153 EVDAGW 158 (300)
Q Consensus 153 ~l~~~~ 158 (300)
++.++|
T Consensus 81 ~~~~~~ 86 (87)
T PF00887_consen 81 ELIPKY 86 (87)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998765
No 7
>PHA02791 ankyrin-like protein; Provisional
Probab=99.82 E-value=3e-20 Score=158.35 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCc-chHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNE-KNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~-~t~l~~a~~~~~~ 216 (300)
++..+..++++.|+....+ ++. ....+.+++|.|+..|+..+..++ .. .+..+..| .||||+|+..+..
T Consensus 68 Aa~~g~~eiV~lLL~~Gad-----vn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~ 141 (284)
T PHA02791 68 AATLEDTKIVKILLFSGMD-----DSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 141 (284)
T ss_pred HHHCCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH
Confidence 3444555555555543322 111 122345667777777765333322 22 12233444 4677777766666
Q ss_pred HHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH-HHHHHhcCcHHHHHHHHHcC
Q psy633 217 MLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG-LDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~g 294 (300)
.++++|+. .+.+. .| ..|.||||+|+..|+.+++++||+ +|+++|.+|..|.|| ||+|+..|+.++|++|+++|
T Consensus 142 eivk~LL~-~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G 217 (284)
T PHA02791 142 SIVSYFLS-EIPST--FDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD 217 (284)
T ss_pred HHHHHHHh-cCCcc--cccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence 66666665 33322 23 247888888888888888888888 888888888888876 88888888888888888888
Q ss_pred CCCCC
Q psy633 295 AHSSN 299 (300)
Q Consensus 295 a~~~~ 299 (300)
|+++.
T Consensus 218 a~in~ 222 (284)
T PHA02791 218 INIYS 222 (284)
T ss_pred CCCcc
Confidence 88875
No 8
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.81 E-value=1.1e-19 Score=116.53 Aligned_cols=84 Identities=36% Similarity=0.661 Sum_probs=79.6
Q ss_pred hhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633 75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 75 l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l 154 (300)
+...|++|..-|+.++..+++++++++|++|||.++|+.+..+||++++.++.||+||..+++.+.+.|..+||.+|++|
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeL 81 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEEL 81 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy633 155 DAGW 158 (300)
Q Consensus 155 ~~~~ 158 (300)
....
T Consensus 82 kak~ 85 (87)
T COG4281 82 KAKY 85 (87)
T ss_pred Hhhc
Confidence 7653
No 9
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.80 E-value=8.3e-19 Score=124.18 Aligned_cols=88 Identities=31% Similarity=0.495 Sum_probs=77.1
Q ss_pred HHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHH
Q psy633 207 YEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286 (300)
Q Consensus 207 l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~i 286 (300)
||+|+..+...+.+.|.. .+.+++. |.||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence 577777666667777766 6777766 8899999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCC
Q psy633 287 IEYLVNSGAHSSNT 300 (300)
Q Consensus 287 v~~Ll~~ga~~~~~ 300 (300)
+++|+++|++++.+
T Consensus 75 ~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 75 VKLLLEHGADVNIR 88 (89)
T ss_dssp HHHHHHTTT-TTSS
T ss_pred HHHHHHcCCCCCCc
Confidence 99999999999864
No 10
>KOG0509|consensus
Probab=99.79 E-value=6.3e-20 Score=164.16 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
+|...-+++++.|++...+ ++.....-+.+|+|.|++.|+..+..++ .. ....|..|.+++|.|+..++..
T Consensus 85 AAiNNrl~v~r~li~~gad-----vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~ 159 (600)
T KOG0509|consen 85 AAINNRLDVARYLISHGAD-----VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA 159 (600)
T ss_pred HHHcCcHHHHHHHHHcCCC-----ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence 7778889999999988766 6666667788999999999998444433 33 5668999999999999877777
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
++.+|+. .+++++.+|.+|+||||||+.+|+...+..||. .|+.++..| ..|.||||||+..|+..++.+|++.|++
T Consensus 160 ~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~ 237 (600)
T KOG0509|consen 160 LVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK-FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD 237 (600)
T ss_pred HHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH-hcccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence 7776666 589999999999999999999999988999999 999999998 9999999999999999999977788887
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
.+.
T Consensus 238 ~d~ 240 (600)
T KOG0509|consen 238 LDK 240 (600)
T ss_pred ccc
Confidence 654
No 11
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.79 E-value=3.8e-19 Score=161.31 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee-eeecccCC----cccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN-VSSMINDE----SQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~-~~~~~~~~----~~~~~~~~t~l~~a~~~~~~ 216 (300)
++..+.+++++.|....... +. ......+++|.|+..|... +..++... +..+..|.||||+|+..+..
T Consensus 42 A~~~~~~~~v~~Ll~~ga~~-----~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~ 115 (413)
T PHA02875 42 AMKFRDSEAIKLLMKHGAIP-----DV-KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL 115 (413)
T ss_pred HHHcCCHHHHHHHHhCCCCc-----cc-cCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH
Confidence 34445556666655543320 00 1112334566666666542 22222211 12234456666666665555
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.||+
T Consensus 116 ~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 116 DIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 55555555 566666666666666666666666666666666 6666666666666666666666666666666666666
Q ss_pred CC
Q psy633 297 SS 298 (300)
Q Consensus 297 ~~ 298 (300)
++
T Consensus 194 ~n 195 (413)
T PHA02875 194 ID 195 (413)
T ss_pred CC
Confidence 55
No 12
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.79 E-value=5.4e-19 Score=145.12 Aligned_cols=151 Identities=18% Similarity=0.078 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccc--ce-eeeecccC---CcccC-cCcchHHHHHH
Q psy633 139 AKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKG--WV-NVSSMIND---ESQLD-DNEKNIYEWAK 211 (300)
Q Consensus 139 ~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~-~~~~~~~~---~~~~~-~~~~t~l~~a~ 211 (300)
...++..+.++.++.|+..- + .....+.+++|.++..+ .. .+..++.. .+..+ ..|.||||+|+
T Consensus 25 L~~A~~~~~~~~vk~Li~~~--------n-~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 25 LFYYVEKDDIEGVKKWIKFV--------N-DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred HHHHHHhCcHHHHHHHHHhh--------h-ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 34577788888888876431 1 12334667889887654 33 33333333 23343 47899999876
Q ss_pred hC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHH--CCCHHHHHHHHhhcCCCccccCCCCCcHHHH-HHhcCcHH
Q psy633 212 EG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACD--RGHLKVVQHLIEKCGADVNVTDSDGDYGLDY-AKAIEHTD 285 (300)
Q Consensus 212 ~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~-A~~~g~~~ 285 (300)
.. +...++++|.. .|++++.+|..|.||||+|+. .++.+++++|++ .|++++.+|..|.||||. |+..++.+
T Consensus 96 ~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~~ 173 (209)
T PHA02859 96 SFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKK 173 (209)
T ss_pred HhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCHH
Confidence 42 35677888887 799999999999999999875 578999999999 999999999999999995 56788999
Q ss_pred HHHHHHHcCCCCCCC
Q psy633 286 LIEYLVNSGAHSSNT 300 (300)
Q Consensus 286 iv~~Ll~~ga~~~~~ 300 (300)
++++|++.|++++.+
T Consensus 174 iv~~Ll~~Gadi~~~ 188 (209)
T PHA02859 174 IFDFLTSLGIDINET 188 (209)
T ss_pred HHHHHHHcCCCCCCC
Confidence 999999999999863
No 13
>KOG0509|consensus
Probab=99.79 E-value=2.4e-19 Score=160.52 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCccccceeeeecccC-C---cccC-cCcchHHHHHHhCC
Q psy633 141 SEAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E---SQLD-DNEKNIYEWAKEGK 214 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~---~~~~-~~~~t~l~~a~~~~ 214 (300)
.+++.+-++.++.+++. ... ++.. +.++-+.+|.|+.++...+.+++.+ . +... ..+.||||||++.+
T Consensus 50 ~A~q~G~l~~v~~lve~~g~~-----v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G 123 (600)
T KOG0509|consen 50 KATQYGELETVKELVESEGES-----VNNP-DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG 123 (600)
T ss_pred hHhhcchHHHHHHHHhhcCcC-----CCCC-CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence 36777888888888776 222 2222 2366788999999988865555444 2 2222 45689999999999
Q ss_pred HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
+..++.+|.+ +|++++.+|.+|.+|||+|+..||..+|-+||. .|+|+|.+|.+|+||||||+..|+...+++||..|
T Consensus 124 ~~~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~ 201 (600)
T KOG0509|consen 124 HISVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG 201 (600)
T ss_pred cHHHHHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence 9999999999 899999999999999999999999999999999 89999999999999999999999988899999999
Q ss_pred CCCCC
Q psy633 295 AHSSN 299 (300)
Q Consensus 295 a~~~~ 299 (300)
+.+..
T Consensus 202 a~~~~ 206 (600)
T KOG0509|consen 202 ASLLL 206 (600)
T ss_pred ccccc
Confidence 98765
No 14
>KOG0508|consensus
Probab=99.79 E-value=4.9e-20 Score=159.10 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhhcCCCch-hhh-hhhccccc-ccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCC
Q psy633 142 EAMSKYIALLNEVDAGWED-KEQ-EEINWDES-QESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGK 214 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~-~~~-~~~~~~~~-~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~ 214 (300)
+|+.+..++++.+.+.... .++ ..+.+|.. ..+..++..|+..||..+.+++.. .+..+.-..|||..||..+
T Consensus 49 aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG 128 (615)
T KOG0508|consen 49 AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDG 128 (615)
T ss_pred ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcc
Confidence 4566677777777664222 111 22344433 355667888999999855444433 3344445568999999877
Q ss_pred HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
+-+++++|.+ +|+|++..|+.|.|+||+||.+||.+|+++|++ .|+|+|.++..|+|+||.++..|+.+|+++|+.+|
T Consensus 129 ~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g 206 (615)
T KOG0508|consen 129 HLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG 206 (615)
T ss_pred hhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCC
Confidence 7777777777 799999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC
Q psy633 295 AHSS 298 (300)
Q Consensus 295 a~~~ 298 (300)
+-++
T Consensus 207 a~i~ 210 (615)
T KOG0508|consen 207 AKID 210 (615)
T ss_pred ceee
Confidence 8654
No 15
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=137.69 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=90.5
Q ss_pred cccCcCcchHHHHHHhCCHHH---HHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC
Q psy633 197 SQLDDNEKNIYEWAKEGKLDM---LVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~---v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~ 272 (300)
+..+..|+||||+|+..+... ++++|.. .|++++.++ ..|.||||+|+..|+.+++++|+...|++++.+|..|.
T Consensus 51 ~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~ 129 (166)
T PHA02743 51 HRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE 129 (166)
T ss_pred hccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCC
Confidence 445778999999999866533 3677777 799999998 48999999999999999999999427999999999999
Q ss_pred cHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 273 YGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 273 TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||||+|+..++.+++++|+++||+++.
T Consensus 130 tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 156 (166)
T PHA02743 130 TAYHIAYKMRDRRMMEILRANGAVCDD 156 (166)
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999875
No 16
>PHA02791 ankyrin-like protein; Provisional
Probab=99.78 E-value=7.1e-19 Score=149.96 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
-++..+++++++.|+..... ++. ....+++|.|+..|+..+..++ .. .+..+..|.||||+|+..+..
T Consensus 36 ~Aa~~g~~eiv~~Ll~~ga~-----~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ 107 (284)
T PHA02791 36 YAIADNNVRLVCTLLNAGAL-----KNL---LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNM 107 (284)
T ss_pred HHHHcCCHHHHHHHHHCcCC-----CcC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 46777888888888776543 111 1246889999998887333333 22 355678899999999998888
Q ss_pred HHHHHHhhcCCCCccccCcCCc-hHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 217 MLVKQLTKLKDFNINQLDENGL-NCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
+++++|.. .|++++..+..|+ ||||+|+..|+.++|++|++ .+.+. .| ..|.||||+|+..|+.+++++|+++|
T Consensus 108 eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~-~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g 183 (284)
T PHA02791 108 QTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPST--FDLAILLSCIHITIKNGHVDMMILLLDYM 183 (284)
T ss_pred HHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHh-cCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence 88888888 8999998888885 89999999999999999998 76543 23 35899999999999999999999999
Q ss_pred CCCCC
Q psy633 295 AHSSN 299 (300)
Q Consensus 295 a~~~~ 299 (300)
|+++.
T Consensus 184 Ad~n~ 188 (284)
T PHA02791 184 TSTNT 188 (284)
T ss_pred CCCCc
Confidence 99875
No 17
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.78 E-value=1.7e-19 Score=141.16 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=103.4
Q ss_pred ccCCCCCccCcccccee-eeec---ccCC-----cccCcCcchHHHHHHhCCHH---HHHHHHhhcCCCCccccCc-CCc
Q psy633 172 QESGSKENEGQTKGWVN-VSSM---INDE-----SQLDDNEKNIYEWAKEGKLD---MLVKQLTKLKDFNINQLDE-NGL 238 (300)
Q Consensus 172 ~~~~~~~~~a~~~g~~~-~~~~---~~~~-----~~~~~~~~t~l~~a~~~~~~---~v~~ll~~~~~~~~~~~d~-~g~ 238 (300)
..+.+++|.|+..|... +... .... ...+..|.|+||+|+..+.. ++.++|.. .|++++.++. .|+
T Consensus 15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~~~~~g~ 93 (154)
T PHA02736 15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGKERVFGN 93 (154)
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCccccCCCCCC
Confidence 35678899999998631 1100 1111 23477899999999886653 45667777 7999999985 899
Q ss_pred hHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 239 t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||||+|+..|+.+++++|+.+.|++++.+|..|.||||+|+..|+.+++++|+++||++++
T Consensus 94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999735999999999999999999999999999999999999874
No 18
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.77 E-value=9.8e-19 Score=158.62 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.|...... ........+.+++|.|+..|...+...+ .. .+..+..|.||||+|+..+..
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKF-----ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCc-----ccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 36677778888888765432 1111223456889999999987443333 22 345677899999999998877
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC-cHHHHHHhcCcHHHHHHHHHcCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
.++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||||+|+..|+.+++++|+++||
T Consensus 149 ~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga 226 (413)
T PHA02875 149 KGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226 (413)
T ss_pred HHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence 88888888 799999999999999999999999999999999 9999999998775 88999999999999999999999
Q ss_pred CCCC
Q psy633 296 HSSN 299 (300)
Q Consensus 296 ~~~~ 299 (300)
|+++
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 9875
No 19
>PHA02741 hypothetical protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=138.51 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=102.9
Q ss_pred cCCCCCccCccccceeeeecc----------cCCcccCcCcchHHHHHHhCCH----HHHHHHHhhcCCCCccccCc-CC
Q psy633 173 ESGSKENEGQTKGWVNVSSMI----------NDESQLDDNEKNIYEWAKEGKL----DMLVKQLTKLKDFNINQLDE-NG 237 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~~----------~~~~~~~~~~~t~l~~a~~~~~----~~v~~ll~~~~~~~~~~~d~-~g 237 (300)
.+.+++|.|+..|...+...+ ...+..+..|.||||+|+..++ ..+.++|.. .|++++.++. .|
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~~~~~g 98 (169)
T PHA02741 20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQEMLEG 98 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCCCcCCC
Confidence 456779999999887332221 1235577889999999998765 467777777 7999999985 89
Q ss_pred chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+||||+|+..++.+++++|+...|++++.+|..|+||||+|+..++.+++++|++.++.
T Consensus 99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999735999999999999999999999999999999987654
No 20
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1e-18 Score=143.50 Aligned_cols=123 Identities=20% Similarity=0.151 Sum_probs=103.4
Q ss_pred CCCCccCccccce-eeeecccCCcccCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccccC-cCCchHHHHHHHC---
Q psy633 175 GSKENEGQTKGWV-NVSSMINDESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDR--- 247 (300)
Q Consensus 175 ~~~~~~a~~~g~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~--- 247 (300)
.++++.|+..|.. .+..++...+..+..|.||||+|+..+ ..+++++|++ .|++++.++ ..|+||||+|+..
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~ 100 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKN 100 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCcc
Confidence 4568889888886 444555556677889999999998643 5677788887 799999997 4799999998763
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA--IEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~ 299 (300)
++.+++++|++ .|+++|.+|..|.||||+|+. .++.+++++|++.|++++.
T Consensus 101 ~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~ 153 (209)
T PHA02859 101 VEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN 153 (209)
T ss_pred ccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence 57999999999 999999999999999999976 4689999999999999875
No 21
>KOG0514|consensus
Probab=99.77 E-value=1.5e-18 Score=145.46 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=123.6
Q ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC----CcccCc
Q psy633 129 YNAWNSLGQM--AKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND----ESQLDD 201 (300)
Q Consensus 129 ~~aw~~~~~~--~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~----~~~~~~ 201 (300)
...|..+... +.-+-.+.|+..++.+.+...+ +-++..+ .++.+.+|.+.+.+.. +|+.++.. .+..+.
T Consensus 225 ~~eW~~~a~~s~a~pe~V~~~l~~f~als~~lL~---yvVNlaD-sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr 300 (452)
T KOG0514|consen 225 QHEWFTNSSTSSSDPEQVEDYLAYFEALSPPLLE---YVVNLAD-SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR 300 (452)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhcChHHHH---HHhhhhc-CCCCeeeeeeecccchHHHHHHhccCccccccccc
Confidence 3457755543 4457788899999888766544 3344444 4566779999988876 55555443 566788
Q ss_pred CcchHHHHHHh------CCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633 202 NEKNIYEWAKE------GKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 274 (300)
Q Consensus 202 ~~~t~l~~a~~------~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp 274 (300)
.|+||++.++. .+...|.+|... .++|.+-.. |.|+|++|+.+|+.++|+.||. +|+|||.+|.+|.|+
T Consensus 301 AGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTA 376 (452)
T KOG0514|consen 301 AGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTA 376 (452)
T ss_pred ccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHH
Confidence 89999988764 234445555444 578877655 9999999999999999999999 999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633 275 LDYAKAIEHTDLIEYLVN-SGAHSSN 299 (300)
Q Consensus 275 L~~A~~~g~~~iv~~Ll~-~ga~~~~ 299 (300)
|+.||.+||.|||++||. .++|+..
T Consensus 377 LMCA~EHGhkEivklLLA~p~cd~sL 402 (452)
T KOG0514|consen 377 LMCAAEHGHKEIVKLLLAVPSCDISL 402 (452)
T ss_pred HhhhhhhChHHHHHHHhccCccccee
Confidence 999999999999999996 4777654
No 22
>KOG0508|consensus
Probab=99.76 E-value=8.8e-19 Score=151.39 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-----C--------cccCcCcchHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-----E--------SQLDDNEKNIY 207 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-----~--------~~~~~~~~t~l 207 (300)
.+|..+-+..+..+..+-...+..+ -......+.+++-.|++.|+..+..++.+ . +.....|.+||
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~-l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL 88 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIIS-LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL 88 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHH-HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence 3556666666666655433311111 22233455688999999999844433322 0 12345678899
Q ss_pred HHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHH
Q psy633 208 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287 (300)
Q Consensus 208 ~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv 287 (300)
.+|+..+|.+|+++|.. .|+++|....-..|||..||.-||.++|++|++ +|+|++..|..|.|.||+||..||.+|+
T Consensus 89 WaAsaAGHl~vVk~L~~-~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~ 166 (615)
T KOG0508|consen 89 WAASAAGHLEVVKLLLR-RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIA 166 (615)
T ss_pred hHHhccCcHHHHHHHHH-hcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHH
Confidence 98888888889999998 789999998888999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHcCCCCCCC
Q psy633 288 EYLVNSGAHSSNT 300 (300)
Q Consensus 288 ~~Ll~~ga~~~~~ 300 (300)
++|++.|||+|.+
T Consensus 167 qyLle~gADvn~k 179 (615)
T KOG0508|consen 167 QYLLEQGADVNAK 179 (615)
T ss_pred HHHHHhCCCcchh
Confidence 9999999999853
No 23
>PHA02795 ankyrin-like protein; Provisional
Probab=99.76 E-value=2e-18 Score=153.16 Aligned_cols=145 Identities=23% Similarity=0.115 Sum_probs=118.4
Q ss_pred HHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-C----ccc-----CcCcchHHHHHHhCC
Q psy633 145 SKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E----SQL-----DDNEKNIYEWAKEGK 214 (300)
Q Consensus 145 ~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~----~~~-----~~~~~t~l~~a~~~~ 214 (300)
.+++++++-|+..+.+ ++. ....+++|.|+..|+..+..++.. . +.. +..+.+++|.|+.++
T Consensus 128 ~n~~eiV~~LI~~GAD-----In~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~ 199 (437)
T PHA02795 128 YVEIDIVDFMVDHGAV-----IYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT 199 (437)
T ss_pred CCCHHHHHHHHHCCCC-----CCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC
Confidence 4678999999988876 211 122467888888776633333322 1 111 123678899999999
Q ss_pred HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--------cHHH
Q psy633 215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--------HTDL 286 (300)
Q Consensus 215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--------~~~i 286 (300)
..+++++|.. +|+++|.+|..|.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..| |.++
T Consensus 200 ~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI 277 (437)
T PHA02795 200 VLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKI 277 (437)
T ss_pred HHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence 9999999999 899999999999999999999999999999999 99999999999999999999998 5799
Q ss_pred HHHHHHcCCCCCC
Q psy633 287 IEYLVNSGAHSSN 299 (300)
Q Consensus 287 v~~Ll~~ga~~~~ 299 (300)
+++|+++|++++.
T Consensus 278 velLL~~gadI~~ 290 (437)
T PHA02795 278 LEILLREPLSIDC 290 (437)
T ss_pred HHHHHhCCCCCCc
Confidence 9999999999874
No 24
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.76 E-value=2.7e-18 Score=156.67 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc---------------------------
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN--------------------------- 194 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~--------------------------- 194 (300)
++..+.+++++.|+....+ ++. ......++++.|+..|...+..++.
T Consensus 42 A~~~g~~~iv~~Ll~~Ga~-----~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~ 115 (434)
T PHA02874 42 AIRSGDAKIVELFIKHGAD-----INH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGI 115 (434)
T ss_pred HHHcCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcC
Confidence 6777788888888766543 111 1123345677777666642221111
Q ss_pred CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 274 (300)
Q Consensus 195 ~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp 274 (300)
..+..+..|.||||+|+..+...++++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.||
T Consensus 116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~tp 193 (434)
T PHA02874 116 DVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESP 193 (434)
T ss_pred CCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence 123457789999999999887778888888 799999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 275 LDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 275 L~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||+|+..|+.+++++|++.|++++.
T Consensus 194 L~~A~~~g~~~iv~~Ll~~g~~i~~ 218 (434)
T PHA02874 194 LHNAAEYGDYACIKLLIDHGNHIMN 218 (434)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcC
Confidence 9999999999999999999998764
No 25
>KOG0502|consensus
Probab=99.75 E-value=1.6e-18 Score=136.09 Aligned_cols=102 Identities=26% Similarity=0.267 Sum_probs=96.7
Q ss_pred CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
.+..|+.|.|||.||+..++..++++|++ .|++++.......|+|.+|+..|..+||++||. ++.|+|..|.+|-|||
T Consensus 153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpL 230 (296)
T KOG0502|consen 153 VNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPL 230 (296)
T ss_pred ccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCcee
Confidence 46678999999999999888888888888 899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 276 DYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
-||++.||..|++.|++.|||+++
T Consensus 231 lyAvrgnhvkcve~Ll~sGAd~t~ 254 (296)
T KOG0502|consen 231 LYAVRGNHVKCVESLLNSGADVTQ 254 (296)
T ss_pred eeeecCChHHHHHHHHhcCCCccc
Confidence 999999999999999999999985
No 26
>KOG0195|consensus
Probab=99.75 E-value=4.5e-18 Score=138.71 Aligned_cols=101 Identities=27% Similarity=0.336 Sum_probs=96.2
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+.-|..|.+|||||+.+++..++++|+. .|+.+|..+...-||||+|+..||.++|+.||+ ..+|+|+.+..|+||||
T Consensus 28 n~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehgntplh 105 (448)
T KOG0195|consen 28 NVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPLH 105 (448)
T ss_pred ccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCchh
Confidence 4567789999999999999999999999 899999999988999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|||.-|+..|++=|+..||.+++
T Consensus 106 yacfwgydqiaedli~~ga~v~i 128 (448)
T KOG0195|consen 106 YACFWGYDQIAEDLISCGAAVNI 128 (448)
T ss_pred hhhhhcHHHHHHHHHhccceeee
Confidence 99999999999999999999875
No 27
>KOG0512|consensus
Probab=99.75 E-value=5.9e-18 Score=128.12 Aligned_cols=94 Identities=24% Similarity=0.262 Sum_probs=62.6
Q ss_pred CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
.+.+|.+|.||||-|+++++..+++.|+. .|++++.+...||||||.||.-.+.+|+..||. +|+|||+......|||
T Consensus 90 vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq-hgaDVnA~t~g~ltpL 167 (228)
T KOG0512|consen 90 VNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ-HGADVNAQTKGLLTPL 167 (228)
T ss_pred ccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchhHHHHHHh-ccCcccccccccchhh
Confidence 35566677777777777666666665555 577777777777777777777777777777777 7777777777777777
Q ss_pred HHHHhcCcH-HHHHHHH
Q psy633 276 DYAKAIEHT-DLIEYLV 291 (300)
Q Consensus 276 ~~A~~~g~~-~iv~~Ll 291 (300)
|+||.+.+. ..+++|+
T Consensus 168 hlaa~~rn~r~t~~~Ll 184 (228)
T KOG0512|consen 168 HLAAGNRNSRDTLELLL 184 (228)
T ss_pred HHhhcccchHHHHHHHh
Confidence 777665433 3455554
No 28
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.74 E-value=5.8e-18 Score=156.23 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=112.0
Q ss_pred HHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHHHHHHHhh
Q psy633 149 ALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTK 224 (300)
Q Consensus 149 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~ 224 (300)
++++.|.....+ ++..+...+.+++|.|+..|...+..++ .. .+..+..|.||||.|+..+...++++|..
T Consensus 148 ~iv~~Ll~~gad-----in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~ 222 (477)
T PHA02878 148 EITKLLLSYGAD-----INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222 (477)
T ss_pred HHHHHHHHcCCC-----CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 466666655443 3333333367889999998887333333 22 34567789999999998888888888888
Q ss_pred cCCCCccccCcCCchHHHHHHHC-CCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 225 LKDFNINQLDENGLNCLHWACDR-GHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 225 ~~~~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.|++++.+|..|.||||+|+.. ++.+++++|++ .|+++|.++. .|.||||+| .++.+++++|+++|||++.
T Consensus 223 -~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 223 -NGASTDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS 295 (477)
T ss_pred -cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC
Confidence 7999999999999999999975 68999999999 9999999886 799999999 5678999999999999886
No 29
>KOG0510|consensus
Probab=99.73 E-value=2.8e-18 Score=156.94 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhh--hhhcccccccCCCCCccCccccce-eeeec---ccCCcccCcCcchHHHHHH
Q psy633 138 MAKSEAMSKYIALLNEVDAGWEDKEQ--EEINWDESQESGSKENEGQTKGWV-NVSSM---INDESQLDDNEKNIYEWAK 211 (300)
Q Consensus 138 ~~~~~a~~~yi~~v~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~---~~~~~~~~~~~~t~l~~a~ 211 (300)
....++.+.+++.-......|.+..+ .+..-+++.++.+++|.|++.|.. .+..+ -...+.++.++.||||.|+
T Consensus 235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA 314 (929)
T KOG0510|consen 235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA 314 (929)
T ss_pred cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence 34456777777777777777755433 344567777888999999999987 22222 2335667788999999876
Q ss_pred h-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcc---ccCCCCCcHHHHHHhcCcHHHH
Q psy633 212 E-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN---VTDSDGDYGLDYAKAIEHTDLI 287 (300)
Q Consensus 212 ~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~---~~d~~g~TpL~~A~~~g~~~iv 287 (300)
. |....|.+||....-..+|..|..|.||||+|+..||..++++||+ .|++.+ ..|.+|.||||.|+..|+..+|
T Consensus 315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av 393 (929)
T KOG0510|consen 315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAV 393 (929)
T ss_pred HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHH
Confidence 6 6778888888842456778999999999999999999999999999 999887 4599999999999999999999
Q ss_pred HHHHHcCCCCCC
Q psy633 288 EYLVNSGAHSSN 299 (300)
Q Consensus 288 ~~Ll~~ga~~~~ 299 (300)
++|+.+||+++.
T Consensus 394 ~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 394 QKLISHGADIGV 405 (929)
T ss_pred HHHHHcCCceee
Confidence 999999999853
No 30
>PHA02741 hypothetical protein; Provisional
Probab=99.73 E-value=2.5e-17 Score=130.84 Aligned_cols=101 Identities=26% Similarity=0.425 Sum_probs=87.2
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhh-----cCCCCccccCcCCchHHHHHHHCCC----HHHHHHHHhhcCCCccccC
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTK-----LKDFNINQLDENGLNCLHWACDRGH----LKVVQHLIEKCGADVNVTD 268 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~-----~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~g~~~~~~d 268 (300)
..+..|.|+||+|+..+...++++|.. ..+++++.+|..|+||||+|+..|+ .+++++|+. .|+++|.++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~~ 94 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQE 94 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCCC
Confidence 456789999999988776666665532 0367899999999999999999999 589999999 999999998
Q ss_pred C-CCCcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633 269 S-DGDYGLDYAKAIEHTDLIEYLVN-SGAHSSN 299 (300)
Q Consensus 269 ~-~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~ 299 (300)
. .|+||||+|+..++.+++++|+. .|++++.
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~ 127 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF 127 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc
Confidence 5 99999999999999999999998 5999875
No 31
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.73 E-value=2.9e-17 Score=160.39 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-c---CCcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-N---DESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~---~~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
+|..+..+.++.++....+ ++ ..+..+.+++|.|+..|+..+..++ . +.+..|..|.||||+|+.+++..
T Consensus 532 Aa~~g~~~~l~~Ll~~G~d-----~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 532 VASTGNAALLEELLKAKLD-----PD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred HHHcCCHHHHHHHHHCCCC-----CC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 5666777777777766544 11 1233456778888888876333222 2 13456777888888888877777
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|.. .+...+ ...|.++||+|+..|+.+++++|++ +|+++|.+|.+|+||||+|+..|+.+++++|+++|||+
T Consensus 606 iv~~L~~-~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv 681 (823)
T PLN03192 606 IFRILYH-FASISD--PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681 (823)
T ss_pred HHHHHHh-cCcccC--cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence 7777776 444332 2346678889999999999999999 99999999999999999999999999999999999999
Q ss_pred CC
Q psy633 298 SN 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 682 ~~ 683 (823)
T PLN03192 682 DK 683 (823)
T ss_pred CC
Confidence 75
No 32
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.73 E-value=9.7e-18 Score=155.03 Aligned_cols=98 Identities=26% Similarity=0.264 Sum_probs=52.3
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCC------chHHHHHHHCCC--HHHHHHHHhhcCCCccccCCC
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG------LNCLHWACDRGH--LKVVQHLIEKCGADVNVTDSD 270 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~~v~~Ll~~~g~~~~~~d~~ 270 (300)
.+..|.||||+|+..+...++++|.. .|++++..+..| .||||+|+..|+ .+++++|++ .|+++|.+|..
T Consensus 172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~ 249 (480)
T PHA03100 172 KNRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVY 249 (480)
T ss_pred ccCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCC
Confidence 34455555555555444445555544 455555555444 455555555555 555555555 55555555555
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 271 GDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
|.||||+|+..|+.+++++|++.|||++
T Consensus 250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 250 GFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5555555555555555555555555544
No 33
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.72 E-value=2e-17 Score=150.92 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.+...... .++ .......++++.|+..|...+.. ++.. .+..+..+.||||.|+..+...
T Consensus 8 ai~~gd~~~v~~ll~~~~~----~~n-~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~ 82 (434)
T PHA02874 8 CIYSGDIEAIEKIIKNKGN----CIN-ISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD 82 (434)
T ss_pred HHhcCCHHHHHHHHHcCCC----CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 5566677788777643211 011 12234568899999999984333 4333 3446677899999999887777
Q ss_pred HHHHHhhcCC-----------------------CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633 218 LVKQLTKLKD-----------------------FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 274 (300)
Q Consensus 218 v~~ll~~~~~-----------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp 274 (300)
++++|.. .| ++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 83 iv~~Ll~-~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g~tp 160 (434)
T PHA02874 83 IIKLLID-NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNGCYP 160 (434)
T ss_pred HHHHHHH-CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCCCCH
Confidence 7777765 44 5577788899999999999999999999999 999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 275 LDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 275 L~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||+|+..|+.+++++|++.|++++.
T Consensus 161 Lh~A~~~~~~~iv~~Ll~~g~~~n~ 185 (434)
T PHA02874 161 IHIAIKHNFFDIIKLLLEKGAYANV 185 (434)
T ss_pred HHHHHHCCcHHHHHHHHHCCCCCCC
Confidence 9999999999999999999999874
No 34
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.72 E-value=1.5e-17 Score=153.86 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCcc-----CccccceeeeecccC----CcccCcCcchHHHHHH-
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENE-----GQTKGWVNVSSMIND----ESQLDDNEKNIYEWAK- 211 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~- 211 (300)
++..+.+++++.|+....+ ++. ......+++|. |+..|...+...+.+ .+..+..|.||||+|+
T Consensus 42 A~~~~~~~ivk~Ll~~g~~-----~~~-~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~ 115 (480)
T PHA03100 42 AKEARNIDVVKILLDNGAD-----INS-STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS 115 (480)
T ss_pred hhccCCHHHHHHHHHcCCC-----CCC-ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh
Confidence 6667778888888876544 111 12234567888 888887643333322 3456778999999999
Q ss_pred -hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHH
Q psy633 212 -EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288 (300)
Q Consensus 212 -~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~ 288 (300)
..+...++++|.. .|++++..+..|.||||+|+..| +.+++++|++ .|++++.+|..|.||||+|+..|+.++++
T Consensus 116 ~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~~~iv~ 193 (480)
T PHA03100 116 KKSNSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGNIDVIK 193 (480)
T ss_pred cccChHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCCHHHHH
Confidence 8888888988888 89999999999999999999999 9999999999 99999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q psy633 289 YLVNSGAHSSN 299 (300)
Q Consensus 289 ~Ll~~ga~~~~ 299 (300)
+|+++|++++.
T Consensus 194 ~Ll~~ga~~~~ 204 (480)
T PHA03100 194 FLLDNGADINA 204 (480)
T ss_pred HHHHcCCCccC
Confidence 99999999874
No 35
>KOG4177|consensus
Probab=99.72 E-value=2e-17 Score=159.52 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=118.2
Q ss_pred HHHHH-HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccCC----cccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSK-YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDE----SQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~-yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~t~l~~a~~~~~~ 216 (300)
+|+.+ |.+....+.....+ ....+..+-+++|.++..|+..+..++.+. +.....+.+++|.+..-+..
T Consensus 447 aa~~g~~~~~~~~l~~~g~~------~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v 520 (1143)
T KOG4177|consen 447 AAKKGRYLQIARLLLQYGAD------PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTV 520 (1143)
T ss_pred hhhcccHhhhhhhHhhcCCC------cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhH
Confidence 45555 66666655544333 122334556779999999998766666552 33445678889988887777
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.+.+.+.. +|++++.++..|.||||.||..|+..+|++||+ +|++++.+|+.|+||||.||..|+.+|+.+|+++||+
T Consensus 521 ~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~ 598 (1143)
T KOG4177|consen 521 KVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS 598 (1143)
T ss_pred HHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence 77777777 799999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
||.
T Consensus 599 vna 601 (1143)
T KOG4177|consen 599 VNA 601 (1143)
T ss_pred CCc
Confidence 885
No 36
>KOG4214|consensus
Probab=99.71 E-value=3.4e-17 Score=110.99 Aligned_cols=89 Identities=28% Similarity=0.476 Sum_probs=79.5
Q ss_pred HHHHHh-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633 207 YEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285 (300)
Q Consensus 207 l~~a~~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~ 285 (300)
+.|+.+ |...+|.+.+.. |.++|..- .|++|||+|+..|+.+++++|+. .|++++.+|..|-|||..|+..||..
T Consensus 6 ~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~ 81 (117)
T KOG4214|consen 6 VAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRD 81 (117)
T ss_pred HhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHH
Confidence 345544 678888888877 77887654 79999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q psy633 286 LIEYLVNSGAHSSN 299 (300)
Q Consensus 286 iv~~Ll~~ga~~~~ 299 (300)
||++||+.|||.++
T Consensus 82 cVklLL~~GAdrt~ 95 (117)
T KOG4214|consen 82 CVKLLLQNGADRTI 95 (117)
T ss_pred HHHHHHHcCcccce
Confidence 99999999999765
No 37
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.70 E-value=4e-17 Score=154.21 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=112.8
Q ss_pred HHHHHHHhhcCCC-chhhhhhhcccccccCCCCCccCccccc--e-eeeecccC---CcccCcCcchHHHHHHhCCH--H
Q psy633 146 KYIALLNEVDAGW-EDKEQEEINWDESQESGSKENEGQTKGW--V-NVSSMIND---ESQLDDNEKNIYEWAKEGKL--D 216 (300)
Q Consensus 146 ~yi~~v~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~g~--~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~--~ 216 (300)
..+++++.|+... .+ ++......+.+++|.++..++ . .+..++.. .+..+..|.||||+|+..+. .
T Consensus 153 v~leiVk~LLe~G~AD-----IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~ 227 (764)
T PHA02716 153 IDLDLIKYMVDVGIVN-----LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA 227 (764)
T ss_pred CCHHHHHHHHHCCCCC-----cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence 4667777777665 33 333324456678887654432 2 33333322 45677889999999988663 4
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHH-------------------------------------HHCCCHHHHHHHHhh
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWA-------------------------------------CDRGHLKVVQHLIEK 259 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A-------------------------------------~~~g~~~~v~~Ll~~ 259 (300)
+++++|++ .|++++.+|..|+||||+| +..|+.+++++|++
T Consensus 228 eIVklLLe-~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe- 305 (764)
T PHA02716 228 SVIKKIIE-LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ- 305 (764)
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-
Confidence 77888888 8999999999999999975 45688899999999
Q ss_pred cCCCccccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCCCC
Q psy633 260 CGADVNVTDSDGDYGLDYAKA--IEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 260 ~g~~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~ 299 (300)
.|++++.+|..|+||||+|+. .++.+++++|++.||+++.
T Consensus 306 ~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~ 347 (764)
T PHA02716 306 PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE 347 (764)
T ss_pred CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc
Confidence 999999999999999999864 4689999999999999875
No 38
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=136.26 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=52.4
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~ 280 (300)
.|.||||+|+..+..++.++|.. .|++++.. +..|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+.
T Consensus 69 ~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~ 146 (300)
T PHA02884 69 SKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALM 146 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Confidence 45666666665555555555555 56666654 3346666666666666666666666 666666666666666666666
Q ss_pred cCcHHHHHHHH
Q psy633 281 IEHTDLIEYLV 291 (300)
Q Consensus 281 ~g~~~iv~~Ll 291 (300)
.++.+++.++.
T Consensus 147 ~~~~~~~~~~~ 157 (300)
T PHA02884 147 ICNNFLAFMIC 157 (300)
T ss_pred hCChhHHHHhc
Confidence 55555554443
No 39
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.70 E-value=1e-16 Score=148.02 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=93.5
Q ss_pred cccCcC-cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 197 SQLDDN-EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 197 ~~~~~~-~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
+..+.. |.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus 161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpL 238 (477)
T PHA02878 161 NMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPL 238 (477)
T ss_pred CccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHH
Confidence 445566 9999999999888888888888 899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhc-CcHHHHHHHHHcCCCCCC
Q psy633 276 DYAKAI-EHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A~~~-g~~~iv~~Ll~~ga~~~~ 299 (300)
|+|+.. ++.+++++|+++|++++.
T Consensus 239 h~A~~~~~~~~iv~~Ll~~gadvn~ 263 (477)
T PHA02878 239 HISVGYCKDYDILKLLLEHGVDVNA 263 (477)
T ss_pred HHHHHhcCCHHHHHHHHHcCCCCCc
Confidence 999975 799999999999999975
No 40
>KOG0512|consensus
Probab=99.68 E-value=2e-16 Score=119.87 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=83.6
Q ss_pred HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285 (300)
Q Consensus 206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~ 285 (300)
.|.+|..+.+..|+.+|.. ...-+|.+|.+|.||||-|+.+||.+||..|+. +|++++++...||||||-||.-++.+
T Consensus 67 ~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred HHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchh
Confidence 4455566788888888888 666789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q psy633 286 LIEYLVNSGAHSSN 299 (300)
Q Consensus 286 iv~~Ll~~ga~~~~ 299 (300)
|+.+||++|||||.
T Consensus 145 va~~LLqhgaDVnA 158 (228)
T KOG0512|consen 145 VAGRLLQHGADVNA 158 (228)
T ss_pred HHHHHHhccCcccc
Confidence 99999999999986
No 41
>PHA03095 ankyrin-like protein; Provisional
Probab=99.68 E-value=9.4e-17 Score=148.11 Aligned_cols=143 Identities=20% Similarity=0.156 Sum_probs=106.7
Q ss_pred HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccc--e-eeeecc---cCCcccCcCcchHHHHHHhCCH--HHHH
Q psy633 148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGW--V-NVSSMI---NDESQLDDNEKNIYEWAKEGKL--DMLV 219 (300)
Q Consensus 148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~--~-~~~~~~---~~~~~~~~~~~t~l~~a~~~~~--~~v~ 219 (300)
+++++.|.....+ +... ...+.+++|.++.... . .+..++ ...+..+..|.||||+|+..+. ..+.
T Consensus 167 ~~iv~~Ll~~g~~-----~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v 240 (471)
T PHA03095 167 VELLRLLIDAGAD-----VYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV 240 (471)
T ss_pred HHHHHHHHHcCCC-----Cccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHH
Confidence 4555555554433 1111 3345566766554322 2 222222 2246678889999999988654 2455
Q ss_pred HHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 220 ~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
.+|.. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.||||+|+..|+.+++++|++.+++++
T Consensus 241 ~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 241 LPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred HHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 55555 699999999999999999999999999999999 999999999999999999999999999999999998864
No 42
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.68 E-value=1.2e-16 Score=151.09 Aligned_cols=144 Identities=18% Similarity=0.115 Sum_probs=110.6
Q ss_pred HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce---eeeecccC---CcccCcCcchHHHHHH----------
Q psy633 148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV---NVSSMIND---ESQLDDNEKNIYEWAK---------- 211 (300)
Q Consensus 148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~---~~~~~~~~~t~l~~a~---------- 211 (300)
+++++.|+....+ ++. ....+.+++|.|+..|.. .+..++.. .+..+..|.||||.|+
T Consensus 192 ~eIVklLLe~GAD-----VN~-kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EI 265 (764)
T PHA02716 192 IDILEWLCNNGVN-----VNL-QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEI 265 (764)
T ss_pred HHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHH
Confidence 5677777766544 222 223567889999998853 33334333 4557788999998652
Q ss_pred ---------------------------hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHH--CCCHHHHHHHHhhcCC
Q psy633 212 ---------------------------EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD--RGHLKVVQHLIEKCGA 262 (300)
Q Consensus 212 ---------------------------~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~g~ 262 (300)
..+...++++|++ .|++++.+|..|+||||+|+. .++.+++++|++ .|+
T Consensus 266 vkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe-~GA 343 (764)
T PHA02716 266 TNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHE-YGN 343 (764)
T ss_pred HHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHH-cCC
Confidence 2233456666777 799999999999999999864 568999999999 999
Q ss_pred CccccCCCCCcHHHHHHh--------------cCcHHHHHHHHHcCCCCCC
Q psy633 263 DVNVTDSDGDYGLDYAKA--------------IEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 263 ~~~~~d~~g~TpL~~A~~--------------~g~~~iv~~Ll~~ga~~~~ 299 (300)
+++.+|..|+||||+|+. .++.+++++|+++||+++.
T Consensus 344 DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~ 394 (764)
T PHA02716 344 DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA 394 (764)
T ss_pred CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence 999999999999999875 3789999999999999975
No 43
>PHA02798 ankyrin-like protein; Provisional
Probab=99.67 E-value=4.3e-16 Score=144.18 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=51.2
Q ss_pred ccCcCcchHHHHHHhCC---HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC---HHHHHHHHhhcCCCccccC-CC
Q psy633 198 QLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNVTD-SD 270 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~---~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~g~~~~~~d-~~ 270 (300)
..+..|.||||+|+.++ ...+.++|.. .|++++..|..|.||||+|+..|+ .+++++|++ .|++++.++ ..
T Consensus 104 ~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~ 181 (489)
T PHA02798 104 KKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKE 181 (489)
T ss_pred CCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCcccccCcC
Confidence 34445555555555432 3344444444 455555555555555555555554 555555555 555555553 34
Q ss_pred CCcHHHHHHhcCc----HHHHHHHHHcCCCCC
Q psy633 271 GDYGLDYAKAIEH----TDLIEYLVNSGAHSS 298 (300)
Q Consensus 271 g~TpL~~A~~~g~----~~iv~~Ll~~ga~~~ 298 (300)
|.||||.+...+. .+++++|+++|++++
T Consensus 182 ~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~ 213 (489)
T PHA02798 182 KYDTLHCYFKYNIDRIDADILKLFVDNGFIIN 213 (489)
T ss_pred CCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
Confidence 5555555554432 345555555555554
No 44
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.67 E-value=3e-16 Score=124.14 Aligned_cols=98 Identities=21% Similarity=0.422 Sum_probs=80.4
Q ss_pred CcCcchHH-HHHHhCCHHHHH---HHHhhcCCCCccccCcCCchHHHHHHHCCCHHH---HHHHHhhcCCCccccC-CCC
Q psy633 200 DDNEKNIY-EWAKEGKLDMLV---KQLTKLKDFNINQLDENGLNCLHWACDRGHLKV---VQHLIEKCGADVNVTD-SDG 271 (300)
Q Consensus 200 ~~~~~t~l-~~a~~~~~~~v~---~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~---v~~Ll~~~g~~~~~~d-~~g 271 (300)
+..+.+.+ ++|..|+...+. ++|.. .+..++..|..|+||||+|+..|+.++ +++|+. .|+++|.+| ..|
T Consensus 17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g 94 (166)
T PHA02743 17 DEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTG 94 (166)
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCC
Confidence 33444455 455667775444 35556 688899999999999999999998654 899999 999999998 589
Q ss_pred CcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633 272 DYGLDYAKAIEHTDLIEYLVN-SGAHSSN 299 (300)
Q Consensus 272 ~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~ 299 (300)
.||||+|+..|+.+++++|++ .|++++.
T Consensus 95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~ 123 (166)
T PHA02743 95 NTLLHIAASTKNYELAEWLCRQLGVNLGA 123 (166)
T ss_pred CcHHHHHHHhCCHHHHHHHHhccCCCccC
Confidence 999999999999999999995 7999875
No 45
>PHA03095 ankyrin-like protein; Provisional
Probab=99.67 E-value=5.9e-16 Score=142.82 Aligned_cols=145 Identities=19% Similarity=0.119 Sum_probs=112.7
Q ss_pred HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccc---ce-eeeecccC---CcccCcCcchHHHHHHhCC-HHHH
Q psy633 147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKG---WV-NVSSMIND---ESQLDDNEKNIYEWAKEGK-LDML 218 (300)
Q Consensus 147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~-~~~v 218 (300)
.++.++.|+....+ ++.. ...+.+++|.++..| .. .+..++.. .+..+..|.||||+|+..+ ...+
T Consensus 26 ~~~~v~~Ll~~ga~-----vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~i 99 (471)
T PHA03095 26 TVEEVRRLLAAGAD-----VNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV 99 (471)
T ss_pred CHHHHHHHHHcCCC-----cccC-CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHH
Confidence 35666666655433 2222 233567788888877 43 23333322 4556778999999998877 6888
Q ss_pred HHHHhhcCCCCccccCcCCchHHHHHH--HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHHHHHcC
Q psy633 219 VKQLTKLKDFNINQLDENGLNCLHWAC--DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEYLVNSG 294 (300)
Q Consensus 219 ~~ll~~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~g 294 (300)
+++|.. .|++++.+|..|.||||+|+ ..++.+++++|++ .|++++..|..|.||||+|+..+ +.+++++|++.|
T Consensus 100 v~lLl~-~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g 177 (471)
T PHA03095 100 IKLLIK-AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG 177 (471)
T ss_pred HHHHHH-cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence 888888 89999999999999999999 5678999999999 99999999999999999998865 689999999999
Q ss_pred CCCCC
Q psy633 295 AHSSN 299 (300)
Q Consensus 295 a~~~~ 299 (300)
++++.
T Consensus 178 ~~~~~ 182 (471)
T PHA03095 178 ADVYA 182 (471)
T ss_pred CCCcc
Confidence 99864
No 46
>PHA02795 ankyrin-like protein; Provisional
Probab=99.66 E-value=2.4e-16 Score=139.91 Aligned_cols=157 Identities=14% Similarity=0.029 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcc--ccceee-eecccCCcccC-cCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQT--KGWVNV-SSMINDESQLD-DNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~~-~~~~~~~~~~~-~~~~t~l~~a~~~~~~~ 217 (300)
+|...|-++++-+........-............+.+|.++. .|+..+ ..++......+ ..+.|++|.|+..+..+
T Consensus 84 ~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~e 163 (437)
T PHA02795 84 FAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESS 163 (437)
T ss_pred HhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHH
Confidence 566667778887777765522111111233445677888877 555533 34444433322 34579999999988888
Q ss_pred HHHHHhhcCCCCc-ccc-----CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633 218 LVKQLTKLKDFNI-NQL-----DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 218 v~~ll~~~~~~~~-~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 291 (300)
++++|+. .|++. +.. +..+.|++|.|+..++.+++++|++ +|+++|.+|..|.||||+|+..|+.+++++|+
T Consensus 164 IVk~Lls-~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL 241 (437)
T PHA02795 164 VVEFILN-CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL 241 (437)
T ss_pred HHHHHHh-cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999998 78743 222 1347899999999999999999999 99999999999999999999999999999999
Q ss_pred HcCCCCCCC
Q psy633 292 NSGAHSSNT 300 (300)
Q Consensus 292 ~~ga~~~~~ 300 (300)
++||+++.+
T Consensus 242 ~~GAdIN~~ 250 (437)
T PHA02795 242 ENGANVNAV 250 (437)
T ss_pred HCCCCCCCc
Confidence 999999863
No 47
>PHA02946 ankyin-like protein; Provisional
Probab=99.66 E-value=6.3e-16 Score=140.81 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=73.1
Q ss_pred cCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccc-cCcCCchHHHHHH
Q psy633 173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQ-LDENGLNCLHWAC 245 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~-~d~~g~t~Lh~A~ 245 (300)
.+.+++|.|+..|+..+..++ .. .+..+..|.||||+|+..+ ..++.++|+. .|++++. .|..|.|||| ||
T Consensus 71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa 148 (446)
T PHA02946 71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-AC 148 (446)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHH-HH
Confidence 344566666666665322222 21 2345566666666655433 2344555555 5666663 4566666665 44
Q ss_pred HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCCCC
Q psy633 246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 246 ~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~ga~~~~ 299 (300)
..|+.+++++|++ .|++++.+|..|+||||+|+..+ +.+++++|++.||+++.
T Consensus 149 ~~~~~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~ 203 (446)
T PHA02946 149 TDPSERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK 203 (446)
T ss_pred HCCChHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence 5566666666666 66777777777777777765543 45677777777777654
No 48
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.65 E-value=4.7e-16 Score=149.57 Aligned_cols=101 Identities=26% Similarity=0.308 Sum_probs=77.3
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC-HHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
+..+..|.||||+|+..+...++++|.. .|++++..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+|||
T Consensus 369 n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpL 446 (682)
T PHA02876 369 NARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPL 446 (682)
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHH
Confidence 4456667777777776666666666666 677777777777777777765544 456778888 8888999999999999
Q ss_pred HHHHhcC-cHHHHHHHHHcCCCCCC
Q psy633 276 DYAKAIE-HTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A~~~g-~~~iv~~Ll~~ga~~~~ 299 (300)
|+|+..| +.+++++|++.||+++.
T Consensus 447 h~Aa~~~~~~~iv~lLl~~Gad~n~ 471 (682)
T PHA02876 447 HYACKKNCKLDVIEMLLDNGADVNA 471 (682)
T ss_pred HHHHHhCCcHHHHHHHHHCCCCCCC
Confidence 9999876 68999999999999875
No 49
>PHA02946 ankyin-like protein; Provisional
Probab=99.65 E-value=3.9e-16 Score=142.17 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce---eeeecccC---Cc-ccCcCcchHHHHHHhC
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV---NVSSMIND---ES-QLDDNEKNIYEWAKEG 213 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~---~~-~~~~~~~t~l~~a~~~ 213 (300)
-++..+..++++.|+....+ ++. ....+.+++|.|+..+.. .+..++.. .+ ..+..|.||||+|..+
T Consensus 78 ~Aa~~g~~eiv~lLL~~GAd-----in~-~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~ 151 (446)
T PHA02946 78 IASKINNNRIVAMLLTHGAD-----PNA-CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDP 151 (446)
T ss_pred HHHHcCCHHHHHHHHHCcCC-----CCC-CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCC
Confidence 46778888999888876644 322 233556788877665532 22223322 22 3577899999977665
Q ss_pred CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHH
Q psy633 214 KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEY 289 (300)
Q Consensus 214 ~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~ 289 (300)
+ ..+.++|.. .|++++..|..|+||||+|+..+ +.+++++|++ .|++++.+|..|+||||+|+..| +.+++++
T Consensus 152 ~-~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l 228 (446)
T PHA02946 152 S-ERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDIINL 228 (446)
T ss_pred C-hHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence 5 456666666 69999999999999999987654 5799999999 99999999999999999999986 8899999
Q ss_pred HHHcCCCCCC
Q psy633 290 LVNSGAHSSN 299 (300)
Q Consensus 290 Ll~~ga~~~~ 299 (300)
|++ |++++.
T Consensus 229 Ll~-gadin~ 237 (446)
T PHA02946 229 LLP-STDVNK 237 (446)
T ss_pred HHc-CCCCCC
Confidence 995 899885
No 50
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.64 E-value=8.2e-16 Score=131.34 Aligned_cols=95 Identities=20% Similarity=0.084 Sum_probs=85.8
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCccccC----cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHH
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD----ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDY 277 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d----~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~ 277 (300)
..++|++|+..+...++++|++ .|++++.++ ..|.||||+|+..|+.+++++|++ +|+++|.++ ..|.||||+
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~ 110 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYI 110 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHH
Confidence 3457788888887888888888 899999874 579999999999999999999999 999999974 689999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCC
Q psy633 278 AKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 278 A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..|+.+++++|++.||+++.
T Consensus 111 Aa~~~~~eivklLL~~GAdin~ 132 (300)
T PHA02884 111 SVLHGCLKCLEILLSYGADINI 132 (300)
T ss_pred HHHcCCHHHHHHHHHCCCCCCC
Confidence 9999999999999999999975
No 51
>KOG4177|consensus
Probab=99.64 E-value=2.7e-16 Score=151.85 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+..+.+.-+...|.. ...+....-+++|.++..+...+...+.+ .+..+..+.||||.|+..+...
T Consensus 481 aaq~Gh~~~~~llle~~~~------~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~ 554 (1143)
T KOG4177|consen 481 AAQEGHTEVVQLLLEGGAN------DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD 554 (1143)
T ss_pred hhccCCchHHHHhhhcCCc------cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence 4444555555555554422 12344455677888888888744444432 3556778899999999977777
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|++ +|++++.++..|+||||.||..|+.+|+.+|++ +|+++|..|.+|.||||+|...|+..++++|+..|+++
T Consensus 555 ~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 555 LVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP 632 (1143)
T ss_pred HHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence 8888887 799999999999999999999999999999999 99999999999999999999999999999999999873
No 52
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.63 E-value=7e-16 Score=98.14 Aligned_cols=54 Identities=41% Similarity=0.760 Sum_probs=46.7
Q ss_pred CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633 237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 237 g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 291 (300)
|+||||+||..|+.+++++|++ .|+++|.+|.+|+||||+|+.+|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999 89999999999999999999999999999996
No 53
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.62 E-value=5e-16 Score=121.53 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=79.5
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhc------CCCCccccCcCCchHHHHHHHCCCHH---HHHHHHhhcCCCcccc
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKL------KDFNINQLDENGLNCLHWACDRGHLK---VVQHLIEKCGADVNVT 267 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~------~~~~~~~~d~~g~t~Lh~A~~~g~~~---~v~~Ll~~~g~~~~~~ 267 (300)
+..+..|.||||+|+..+. +..++... .+..++..|..|+||||+|+..|+.+ ++++|+. .|++++.+
T Consensus 11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~ 87 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGK 87 (154)
T ss_pred HhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCcccc
Confidence 4456789999999988664 22332210 01123456889999999999999874 6889999 99999999
Q ss_pred CC-CCCcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633 268 DS-DGDYGLDYAKAIEHTDLIEYLVN-SGAHSSN 299 (300)
Q Consensus 268 d~-~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~ 299 (300)
|. .|+||||+|+..|+.+++++|++ .|++++.
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~ 121 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI 121 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc
Confidence 84 99999999999999999999998 5999874
No 54
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.62 E-value=2e-15 Score=145.28 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=75.8
Q ss_pred cCCCCCccCccccce--eeeecccC---CcccCcCcchHHHHHHhCC-HHHHHHHHhhcCCCCccccCcCCchHHHHHHH
Q psy633 173 ESGSKENEGQTKGWV--NVSSMIND---ESQLDDNEKNIYEWAKEGK-LDMLVKQLTKLKDFNINQLDENGLNCLHWACD 246 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~--~~~~~~~~---~~~~~~~~~t~l~~a~~~~-~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~ 246 (300)
.+.+++|.|+..|.. .+..++.. .+..+..|.||||+|+..+ ...+.++|.. .|++++..|..|+||||+|+.
T Consensus 272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~A~~ 350 (682)
T PHA02876 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQAST 350 (682)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHHHHH
Confidence 345667777766653 22222221 2345566777777766644 3455555555 566666666666677776665
Q ss_pred C-CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 247 R-GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 247 ~-g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
. ++.+++.+|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 351 ~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 351 LDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402 (682)
T ss_pred hCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 4 35666666666 667777666667777777766666666666666666654
No 55
>KOG0510|consensus
Probab=99.62 E-value=1.1e-15 Score=140.23 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC------------------CcccCcC
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND------------------ESQLDDN 202 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~------------------~~~~~~~ 202 (300)
+|..+-.+.++-..+....+.+..+++... +..+++|.|...|+. .+...+.. .+..|.+
T Consensus 194 aa~s~s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d 272 (929)
T KOG0510|consen 194 AARSGSKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND 272 (929)
T ss_pred HHHhcchhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence 344333344443343222223333444443 445679999999987 22222211 2445788
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhh-cCCCccccCCCCCcHHHHHHhc
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK-CGADVNVTDSDGDYGLDYAKAI 281 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~g~~~~~~d~~g~TpL~~A~~~ 281 (300)
|.||||+|++.|..+.+..|+. .|++++.++.++.||||.|+..|+.++|+-||+. .-...|..|-.|.||||+|++.
T Consensus 273 g~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~ 351 (929)
T KOG0510|consen 273 GCTPLHYAARQGGPESVDNLLG-FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS 351 (929)
T ss_pred CCchHHHHHHcCChhHHHHHHH-cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence 9999999999888888888888 8999999999999999999999999999999983 3457889999999999999999
Q ss_pred CcHHHHHHHHHcCCCCC
Q psy633 282 EHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 282 g~~~iv~~Ll~~ga~~~ 298 (300)
||..++++|+..||...
T Consensus 352 gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 352 GHDRVVQLLLNKGALFL 368 (929)
T ss_pred CHHHHHHHHHhcChhhh
Confidence 99999999999999864
No 56
>PHA02798 ankyrin-like protein; Provisional
Probab=99.61 E-value=2.4e-15 Score=139.23 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce----eeeecccC---CcccCcCcchHHHHHHhCCH---H
Q psy633 147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV----NVSSMIND---ESQLDDNEKNIYEWAKEGKL---D 216 (300)
Q Consensus 147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~----~~~~~~~~---~~~~~~~~~t~l~~a~~~~~---~ 216 (300)
.+++++.|+....+ ++..+ ..+.+++|.|+..|.. .+..++.. .+..+..|.||||+|+..+. .
T Consensus 88 ~~~iv~~Ll~~Gad-----iN~~d-~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~ 161 (489)
T PHA02798 88 MLDIVKILIENGAD-----INKKN-SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI 161 (489)
T ss_pred HHHHHHHHHHCCCC-----CCCCC-CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence 46667666665543 22221 2345666666655431 22222221 23455666666666665443 4
Q ss_pred HHHHHHhhcCCCCccccC-cCCchHHHHH
Q psy633 217 MLVKQLTKLKDFNINQLD-ENGLNCLHWA 244 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A 244 (300)
.++++|.+ .|++++..+ ..|.||||.+
T Consensus 162 ~vv~~Ll~-~gadin~~~~~~~~t~Lh~~ 189 (489)
T PHA02798 162 EIIKLLLE-KGVDINTHNNKEKYDTLHCY 189 (489)
T ss_pred HHHHHHHH-hCCCcccccCcCCCcHHHHH
Confidence 55555555 455555443 2344444444
No 57
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.61 E-value=2.2e-15 Score=139.68 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=58.1
Q ss_pred cccCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCc-cccCcCCchHHHHHHHC--CCHHHHHHHHhhcCCCccc-cCC
Q psy633 197 SQLDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNI-NQLDENGLNCLHWACDR--GHLKVVQHLIEKCGADVNV-TDS 269 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~-~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~~g~~~~~-~d~ 269 (300)
+..+..|.||||.|+.. +..+++++|++ .|+++ +..|..|+||||+|+.. ++.+++++|++ .|++++. .+.
T Consensus 102 n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~ 179 (494)
T PHA02989 102 NLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSL 179 (494)
T ss_pred CCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccc
Confidence 33455566666654332 33445555555 56666 55666666666665432 45666666666 6666666 455
Q ss_pred CCCcHHHHHHhcC----cHHHHHHHHHcCCCCCC
Q psy633 270 DGDYGLDYAKAIE----HTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 270 ~g~TpL~~A~~~g----~~~iv~~Ll~~ga~~~~ 299 (300)
.|.||||+|+..+ +.+++++|+++||+++.
T Consensus 180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~ 213 (494)
T PHA02989 180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET 213 (494)
T ss_pred cCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence 6666666665543 56666666666666653
No 58
>KOG0502|consensus
Probab=99.61 E-value=2.3e-15 Score=118.41 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=100.6
Q ss_pred CCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHH
Q psy633 177 KENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252 (300)
Q Consensus 177 ~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~ 252 (300)
.++.++..|+. .++..+.. .+..+.-+++|+.++....+..++.++.+ ..+|.+|..|.|||+||+..||+.+
T Consensus 99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~v 175 (296)
T KOG0502|consen 99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPV 175 (296)
T ss_pred hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHH
Confidence 35666777765 33333333 45666778899999988777776666655 6789999999999999999999999
Q ss_pred HHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 253 v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|++||. .|++++.....-.|+|++|+..|..+||++||.++.|+|+
T Consensus 176 V~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv 221 (296)
T KOG0502|consen 176 VQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNV 221 (296)
T ss_pred HHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce
Confidence 999999 9999999999999999999999999999999999999986
No 59
>PHA02917 ankyrin-like protein; Provisional
Probab=99.61 E-value=1.9e-15 Score=143.06 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceee-----eecccCCcccC-cCcchHHHHHHhCCHHH
Q psy633 144 MSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV-----SSMINDESQLD-DNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 144 ~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~-----~~~~~~~~~~~-~~~~t~l~~a~~~~~~~ 217 (300)
..+++++++.|+....+ ++ .....+.++++.|+..|+..+ ..++......+ ....+++++|+.++..+
T Consensus 44 ~~~~~~~v~~Ll~~ga~-----v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e 117 (661)
T PHA02917 44 HCNNVEVVKLLLDSGTN-----PL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVD 117 (661)
T ss_pred hcCcHHHHHHHHHCCCC-----cc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHH
Confidence 33568899888877655 22 234456788999999987532 23332211111 12236778888888888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHH--HHCCCHHHHHHHHhhcCCCccccCC---CC-----------CcHHHHHHh-
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWA--CDRGHLKVVQHLIEKCGADVNVTDS---DG-----------DYGLDYAKA- 280 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~~g~~~~~~d~---~g-----------~TpL~~A~~- 280 (300)
++++|+. .|++++.+|..|+||||+| +..|+.+++++||+ .|+++|.+|. .| .||||+|+.
T Consensus 118 ~vk~Ll~-~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~ 195 (661)
T PHA02917 118 LIKVLVE-HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIIS 195 (661)
T ss_pred HHHHHHH-cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccccccccccccHHHHHHhh
Confidence 8888888 8999999999999999954 46789999999999 9999987654 34 599999986
Q ss_pred ----------cCcHHHHHHHHHcCCCCCC
Q psy633 281 ----------IEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 281 ----------~g~~~iv~~Ll~~ga~~~~ 299 (300)
.++.+++++|+++|||++.
T Consensus 196 ~~~~~~~~~~~~~~eiv~~Li~~Gadvn~ 224 (661)
T PHA02917 196 HLYSESDTRAYVRPEVVKCLINHGIKPSS 224 (661)
T ss_pred cccccccccccCcHHHHHHHHHCCCCccc
Confidence 5689999999999999985
No 60
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.60 E-value=2.9e-15 Score=138.86 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=81.9
Q ss_pred ccCcCcchHHHHHHhCC------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCC
Q psy633 198 QLDDNEKNIYEWAKEGK------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g 271 (300)
..+..+.++||.+..++ ...+..+|.. ++++|.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|
T Consensus 213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G 289 (494)
T PHA02989 213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDG 289 (494)
T ss_pred ccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCC
Confidence 34456778887665432 3455666666 68889999999999999999999999999999 999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 272 DYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 272 ~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
+||||+|+..|+.+++++|++.+...
T Consensus 290 ~TpL~~A~~~~~~~iv~~LL~~~p~~ 315 (494)
T PHA02989 290 DTVLTYAIKHGNIDMLNRILQLKPGK 315 (494)
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence 99999999999999999999987653
No 61
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.59 E-value=1.3e-15 Score=97.42 Aligned_cols=51 Identities=43% Similarity=0.677 Sum_probs=33.9
Q ss_pred CCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 227 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
..+++..|..|.||||+||..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence 48999999999999999999999999999998 9999999999999999997
No 62
>PHA02917 ankyrin-like protein; Provisional
Probab=99.58 E-value=8.1e-15 Score=138.87 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=91.9
Q ss_pred CccCccccceeeee-cccC---CcccCcCcchHHHHH--HhCCHHHHHHHHhhcCCCCccccCc---CC-----------
Q psy633 178 ENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWA--KEGKLDMLVKQLTKLKDFNINQLDE---NG----------- 237 (300)
Q Consensus 178 ~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a--~~~~~~~v~~ll~~~~~~~~~~~d~---~g----------- 237 (300)
++.|+..|+..+.. ++.. .+..+..|.||||.+ +..++.+++++|++ .|++++..|. .|
T Consensus 107 ~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~ 185 (661)
T PHA02917 107 SYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNC 185 (661)
T ss_pred HHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCcccccccccccccccccccccc
Confidence 34455555542222 2222 355677899999843 45678889999998 8999986653 24
Q ss_pred chHHHHHHH-----------CCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH--HHHHHHHHcCCCCC
Q psy633 238 LNCLHWACD-----------RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT--DLIEYLVNSGAHSS 298 (300)
Q Consensus 238 ~t~Lh~A~~-----------~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~ga~~~ 298 (300)
.||||+|+. .++.+++++|++ .|+++|.+|..|.||||+|+.+|+. ++|++|++ |++++
T Consensus 186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~ 257 (661)
T PHA02917 186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT 257 (661)
T ss_pred ccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence 599999986 568999999999 9999999999999999999999985 79999985 88764
No 63
>KOG0514|consensus
Probab=99.58 E-value=5.7e-15 Score=124.20 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=86.8
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
-...|+|+|+.|...+...+++.|+. .|+++|.+|.+|.|+|+.||.+||.+|+++||...++|+...|.+|.|+|++|
T Consensus 336 AsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 336 ASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA 414 (452)
T ss_pred hhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence 34578999999999888888888888 79999999999999999999999999999999878999999999999999999
Q ss_pred HhcCcHHHHHHHHH
Q psy633 279 KAIEHTDLIEYLVN 292 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~ 292 (300)
...||.+|.-+|..
T Consensus 415 leagh~eIa~mlYa 428 (452)
T KOG0514|consen 415 LEAGHREIAVMLYA 428 (452)
T ss_pred HhcCchHHHHHHHH
Confidence 99999999998875
No 64
>PHA02730 ankyrin-like protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=134.89 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=108.6
Q ss_pred HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccc-----eeeeecccC-----CcccCcCcchHHHH---HHhCC
Q psy633 148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGW-----VNVSSMIND-----ESQLDDNEKNIYEW---AKEGK 214 (300)
Q Consensus 148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~-----~~~~~~~~~-----~~~~~~~~~t~l~~---a~~~~ 214 (300)
+++++-|+..+.+ ++.. ..+.+++|.|+..+. ..+..++.. .+..+..|.|+||. +...+
T Consensus 359 ieIvelLIs~GAd-----IN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n 431 (672)
T PHA02730 359 IPILRCMLDNGAT-----MDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNN 431 (672)
T ss_pred HHHHHHHHHCCCC-----CCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcc
Confidence 4566677766655 3332 456788997776653 233333322 34456789999984 33222
Q ss_pred ---------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhc--C
Q psy633 215 ---------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAI--E 282 (300)
Q Consensus 215 ---------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~--g 282 (300)
...+.++|+. +|+++|.+|..|.||||+|+..++.+++++|++ +|+++|.+|. .|.||||+|+.. +
T Consensus 432 ~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~ 509 (672)
T PHA02730 432 CGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRREN 509 (672)
T ss_pred ccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcC
Confidence 1245788888 899999999999999999999999999999999 9999999996 699999999874 7
Q ss_pred cHHHHHHHHHcCCCCC
Q psy633 283 HTDLIEYLVNSGAHSS 298 (300)
Q Consensus 283 ~~~iv~~Ll~~ga~~~ 298 (300)
+.+++++|+++|++++
T Consensus 510 ~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 510 KTKLVDLLLSYHPTLE 525 (672)
T ss_pred cHHHHHHHHHcCCCHH
Confidence 9999999999999764
No 65
>KOG0515|consensus
Probab=99.57 E-value=6.7e-15 Score=129.01 Aligned_cols=89 Identities=35% Similarity=0.493 Sum_probs=80.6
Q ss_pred HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285 (300)
Q Consensus 206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~ 285 (300)
+|.+|..|.++.|...+-+ -.|+...+..|-|+||-|+..||.+||++||+ +|++||+.|.+||||||.|+.+++..
T Consensus 554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~ 630 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVP 630 (752)
T ss_pred HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchH
Confidence 3456677888877777766 56788899999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCCC
Q psy633 286 LIEYLVNSGAHS 297 (300)
Q Consensus 286 iv~~Ll~~ga~~ 297 (300)
+++.|++.||-|
T Consensus 631 ~ckqLVe~Gaav 642 (752)
T KOG0515|consen 631 MCKQLVESGAAV 642 (752)
T ss_pred HHHHHHhccceE
Confidence 999999999865
No 66
>PHA02730 ankyrin-like protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=132.71 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=87.5
Q ss_pred ccCcCcchHHHHHHhCC---HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCC--CccccCCC
Q psy633 198 QLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGA--DVNVTDSD 270 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~---~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~--~~~~~d~~ 270 (300)
..|..|.||||+|+.++ +.+++++|++ .|++++.+|..|+||||+|+..+ +.++|++|++ .|+ +++..++.
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~-~~~~~~~~~~~~~ 113 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS-SYSNASNELTSNI 113 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh-cCCCCCccccccc
Confidence 56778999999999875 4788898888 89999999999999999999977 7999999999 855 55888888
Q ss_pred CCcHHHHHHh--cCcHHHHHHHHH-cCCCCC
Q psy633 271 GDYGLDYAKA--IEHTDLIEYLVN-SGAHSS 298 (300)
Q Consensus 271 g~TpL~~A~~--~g~~~iv~~Ll~-~ga~~~ 298 (300)
+.||||.++. +++.+++++|++ .|+|++
T Consensus 114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~ 144 (672)
T PHA02730 114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS 144 (672)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHhcCCChh
Confidence 9999999988 899999999997 677765
No 67
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.53 E-value=4.4e-14 Score=138.20 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633 176 SKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251 (300)
Q Consensus 176 ~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 251 (300)
.+++.|+..|... +..++.. .+..|..|.||||+|+..++..++++|.. .|++++.+|..|+||||+|+..||.+
T Consensus 527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 4466677777652 2223322 45567778888888888777778888877 78888888888888888888888888
Q ss_pred HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
++++|+. .++..+. ..|.||||+|+..|+.+++++|+++|+|+|.
T Consensus 606 iv~~L~~-~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~ 650 (823)
T PLN03192 606 IFRILYH-FASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650 (823)
T ss_pred HHHHHHh-cCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence 8888887 7765543 4566888889999999999999999999875
No 68
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.52 E-value=1.6e-14 Score=140.17 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCc-cCccccceeeeecccCCcccCcCcchHHHHHHhCCHHHH-
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN-EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML- 218 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~g~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~v- 218 (300)
.++.++.++.++.++..... .+++.. +..+.+++| .|+.+++..+..++......+..|.||||+|+.++...+
T Consensus 23 ~A~~~g~~~~v~~lL~~~~~---~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~ 98 (743)
T TIGR00870 23 PAAERGDLASVYRDLEEPKK---LNINCP-DRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVE 98 (743)
T ss_pred HHHHcCCHHHHHHHhccccc---cCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHH
Confidence 47888888888888765221 122222 234567788 788887775555554433367789999999998655443
Q ss_pred --HHHHhhcCCCC------cc----ccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC--------------CCCC
Q psy633 219 --VKQLTKLKDFN------IN----QLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD--------------SDGD 272 (300)
Q Consensus 219 --~~ll~~~~~~~------~~----~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d--------------~~g~ 272 (300)
..++.. .+.. ++ ..+..|.||||+||.+|+.++|++|++ .|++++.++ ..|.
T Consensus 99 ~ll~~l~~-~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~ 176 (743)
T TIGR00870 99 AILLHLLA-AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGE 176 (743)
T ss_pred HHHHHHhh-cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccc
Confidence 444443 2211 11 123469999999999999999999999 999999764 2589
Q ss_pred cHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 273 YGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 273 TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||||+|+..|+.+++++|++.|||++.
T Consensus 177 tpL~~Aa~~~~~~iv~lLl~~gadin~ 203 (743)
T TIGR00870 177 SPLNAAACLGSPSIVALLSEDPADILT 203 (743)
T ss_pred cHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence 999999999999999999999999874
No 69
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.51 E-value=8.9e-14 Score=132.50 Aligned_cols=90 Identities=30% Similarity=0.447 Sum_probs=78.5
Q ss_pred HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285 (300)
Q Consensus 206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~ 285 (300)
++++|..|+... +++|+. .|+++|.+|..|+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+
T Consensus 86 L~~aa~~G~~~~-vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 86 LCQLAASGDAVG-ARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHcCCHHH-HHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 334455555555 555555 699999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHc-------CCCCC
Q psy633 286 LIEYLVNS-------GAHSS 298 (300)
Q Consensus 286 iv~~Ll~~-------ga~~~ 298 (300)
++++|+++ ||+++
T Consensus 163 iv~~Ll~~~~~~~~~ga~~~ 182 (664)
T PTZ00322 163 VVQLLSRHSQCHFELGANAK 182 (664)
T ss_pred HHHHHHhCCCcccccCCCCC
Confidence 99999998 77654
No 70
>KOG0195|consensus
Probab=99.50 E-value=1.3e-14 Score=118.65 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=97.4
Q ss_pred CCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 174 SGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 174 ~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
+-+++|.++..|+..+..++.. .+..+....||||.|+..++..++..|+. ..+++|..+..|+||||+||.-|.
T Consensus 34 gfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehgntplhyacfwgy 112 (448)
T KOG0195|consen 34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPLHYACFWGY 112 (448)
T ss_pred CcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCchhhhhhhcH
Confidence 4467999999999855444433 35556667799999988777777776666 689999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
..+++-|+. +|+.++..+..|.|||..|.-.-...+.++--+.|-+++
T Consensus 113 dqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 113 DQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred HHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence 999999999 999999999999999999854433333444445677665
No 71
>KOG0148|consensus
Probab=99.47 E-value=5e-14 Score=113.71 Aligned_cols=104 Identities=21% Similarity=0.362 Sum_probs=84.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH-
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF- 79 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F- 79 (300)
+++|++|..|++|||||||.|-..++|++||. |+|++|++|.|+..+|+.|..+.-.+. ...++-|
T Consensus 91 ~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~------------ltfdeV~N 158 (321)
T KOG0148|consen 91 DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP------------LTFDEVYN 158 (321)
T ss_pred cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC------------ccHHHHhc
Confidence 68999999999999999999999999999999 999999999999999997763221111 1112222
Q ss_pred ----HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC
Q psy633 80 ----NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 117 (300)
Q Consensus 80 ----~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~ 117 (300)
+.+..|++++...++++.+++.|..|+++....+-.++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 22334899999999999999999999999988876554
No 72
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.47 E-value=9.3e-13 Score=98.37 Aligned_cols=97 Identities=32% Similarity=0.472 Sum_probs=73.1
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~ 279 (300)
+..|.|+||.|+..+...+.+.|.. .+.+.+..+..|.||||+|+..+..+++++|+. .|++++..+..|.||+|+|+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~ 81 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAA 81 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHH
Confidence 3567788887777666666666666 566667777778888888888888888888887 77777777777888888888
Q ss_pred hcCcHHHHHHHHHcCCCCC
Q psy633 280 AIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ga~~~ 298 (300)
..++.+++++|++.|.+++
T Consensus 82 ~~~~~~~~~~L~~~~~~~~ 100 (126)
T cd00204 82 RNGNLDVVKLLLKHGADVN 100 (126)
T ss_pred HcCcHHHHHHHHHcCCCCc
Confidence 8888888888887775544
No 73
>KOG0505|consensus
Probab=99.44 E-value=5.4e-14 Score=123.96 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-C---ccc------------CcCcch
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E---SQL------------DDNEKN 205 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~---~~~------------~~~~~t 205 (300)
.+.....++|..++..... ++ ..+...-+++|.|+..|+..+...+.. . ... +....+
T Consensus 80 ~~id~~~e~v~~l~e~ga~-----Vn-~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~ 153 (527)
T KOG0505|consen 80 ACIDDNLEMVKFLVENGAN-----VN-AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLD 153 (527)
T ss_pred HHhcccHHHHHHHHHhcCC-----cc-ccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhH
Confidence 3444555777777766544 11 123455678999999999855444333 0 111 112222
Q ss_pred HHHHHH--hCC-------------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC
Q psy633 206 IYEWAK--EGK-------------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD 270 (300)
Q Consensus 206 ~l~~a~--~~~-------------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~ 270 (300)
.+..+. .|- +..+...+. .|...+..+..|.|+||.|+.+|..++.++||. +|.+++.+|.+
T Consensus 154 ~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~--~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~d 230 (527)
T KOG0505|consen 154 VLETEMARQGIDIEAARKAEEQTMLDDARQWLN--AGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYD 230 (527)
T ss_pred HHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh--ccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCccccccc
Confidence 222221 111 122333333 377888888889999999999999999999999 99999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 271 GDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
||||||.|+.-|+.+++++|+++||+.+.
T Consensus 231 gWtPlHAAA~Wg~~~~~elL~~~ga~~d~ 259 (527)
T KOG0505|consen 231 GWTPLHAAAHWGQEDACELLVEHGADMDA 259 (527)
T ss_pred CCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence 99999999999999999999999999764
No 74
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.44 E-value=8.2e-14 Score=98.41 Aligned_cols=64 Identities=36% Similarity=0.561 Sum_probs=57.6
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d 268 (300)
|.||||+|+..+...+.++|.+ .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEIVKLLLE-HGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH-TTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC
Confidence 7789999999888888998888 899999999999999999999999999999999 999999875
No 75
>KOG0505|consensus
Probab=99.43 E-value=1.7e-13 Score=120.81 Aligned_cols=95 Identities=31% Similarity=0.455 Sum_probs=86.9
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~ 281 (300)
..-.+|.+++.++..++..+|.. |++++..+.+|.|+||-+|.-.+.+||++|++ +|++||..|+.||||||.|+.+
T Consensus 40 ~sa~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~d~e~wtPlhaaasc 116 (527)
T KOG0505|consen 40 DSAVFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQDNEGWTPLHAAASC 116 (527)
T ss_pred chHHHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHH-hcCCccccccccCCcchhhccc
Confidence 33446667778999999998877 78899999999999999999999999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCC
Q psy633 282 EHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 282 g~~~iv~~Ll~~ga~~~~ 299 (300)
||..|+++|+++||++.+
T Consensus 117 g~~~i~~~li~~gA~~~a 134 (527)
T KOG0505|consen 117 GYLNIVEYLIQHGANLLA 134 (527)
T ss_pred ccHHHHHHHHHhhhhhhh
Confidence 999999999999998654
No 76
>KOG0507|consensus
Probab=99.42 E-value=1.6e-13 Score=125.38 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=55.7
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..|.+|.|+||.|+.+++..+.++|++ +.+.++..|..|.+|||+|+..|+.+++++|+. .+..+|+.+-.|.||||
T Consensus 43 n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~~~e~~tplh 120 (854)
T KOG0507|consen 43 NLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAVNIENETPLH 120 (854)
T ss_pred cccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcccccCcCccc
Confidence 4444555555555555555555555555 445555555555555555555555555555555 55555555555555555
Q ss_pred HHHhcCcHHHHHHHHHcCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
.|+++||.+++.+|+.+|+|+
T Consensus 121 laaqhgh~dvv~~Ll~~~adp 141 (854)
T KOG0507|consen 121 LAAQHGHLEVVFYLLKKNADP 141 (854)
T ss_pred hhhhhcchHHHHHHHhcCCCc
Confidence 555555555555555555554
No 77
>PHA02792 ankyrin-like protein; Provisional
Probab=99.42 E-value=7.8e-13 Score=122.07 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=103.1
Q ss_pred HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC---CcccCcC--cchHHHHHHhCCHH---H
Q psy633 147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND---ESQLDDN--EKNIYEWAKEGKLD---M 217 (300)
Q Consensus 147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~--~~t~l~~a~~~~~~---~ 217 (300)
.++.++.++....... .......++.|+..|.. .+..++.. .+..+.. +.||||+|..++.. .
T Consensus 320 ~ieiIK~LId~Ga~~~--------r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~ 391 (631)
T PHA02792 320 YINVIKCMIDEGATLY--------RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLS 391 (631)
T ss_pred cHHHHHHHHHCCCccc--------cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHH
Confidence 3578888877765510 11122234556666655 33333332 2334444 46899988776544 3
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh----------cCcHHHH
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA----------IEHTDLI 287 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~----------~g~~~iv 287 (300)
+.++|.. .|+++|.+|..|+||||+|+..++.+++++|++ .|+++|.+|..|.||||+|+. ..+.+++
T Consensus 392 IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il 469 (631)
T PHA02792 392 ILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKIL 469 (631)
T ss_pred HHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4666777 799999999999999999999999999999999 999999999999999999976 2235679
Q ss_pred HHHHHcCCCCC
Q psy633 288 EYLVNSGAHSS 298 (300)
Q Consensus 288 ~~Ll~~ga~~~ 298 (300)
++|+++|.+++
T Consensus 470 ~lLLs~~p~i~ 480 (631)
T PHA02792 470 EIILSKLPTIE 480 (631)
T ss_pred HHHHhcCCChh
Confidence 99999998764
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.41 E-value=2.3e-12 Score=106.55 Aligned_cols=95 Identities=28% Similarity=0.323 Sum_probs=48.5
Q ss_pred cccCcCcchHHHHHHhCCH-----HHHHHHHhhcCCC---CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC
Q psy633 197 SQLDDNEKNIYEWAKEGKL-----DMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~-----~~v~~ll~~~~~~---~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d 268 (300)
+..+..|.|+||+|+..+. ..+.++|+. .|+ ..+..|..|+||||+|+..|+.+++++|++ .|++++..+
T Consensus 100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~ 177 (235)
T COG0666 100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRN 177 (235)
T ss_pred ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccc
Confidence 3344455555555555444 344444444 344 333345555555555555555555555555 555555555
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633 269 SDGDYGLDYAKAIEHTDLIEYLVNS 293 (300)
Q Consensus 269 ~~g~TpL~~A~~~g~~~iv~~Ll~~ 293 (300)
..|.|||++|+..++.+++++|+..
T Consensus 178 ~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 178 SYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred cCCCcchhhhcccchHHHHHHHHhc
Confidence 5555555555555555555555543
No 79
>PHA02792 ankyrin-like protein; Provisional
Probab=99.38 E-value=2.3e-12 Score=118.99 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=80.4
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCC--chHHHHHHHCCCH---HHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG--LNCLHWACDRGHL---KVVQHLIEKCGADVNVTDSDGDYGLDY 277 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g--~t~Lh~A~~~g~~---~~v~~Ll~~~g~~~~~~d~~g~TpL~~ 277 (300)
....++.|+..+...++++|.. .|++++.+|..| .||||+|+..... +++++|++ +|+++|.+|..|+||||+
T Consensus 339 ~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~ 416 (631)
T PHA02792 339 HINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYY 416 (631)
T ss_pred cchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHH
Confidence 3445666666666667777777 799999998775 6999998876654 45788899 999999999999999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCC
Q psy633 278 AKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 278 A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..++.+++++|+++||+++.
T Consensus 417 Aa~~~n~eivelLLs~GADIN~ 438 (631)
T PHA02792 417 CIESHSVSLVEWLIDNGADINI 438 (631)
T ss_pred HHHcCCHHHHHHHHHCCCCCCC
Confidence 9999999999999999999985
No 80
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.36 E-value=7.9e-13 Score=128.46 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee---eeecccC--------------CcccCcCcc
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN---VSSMIND--------------ESQLDDNEK 204 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~---~~~~~~~--------------~~~~~~~~~ 204 (300)
++..+..++++.|..... ....+.+++|.|+..+... +...+.. .......|.
T Consensus 60 A~~~~~~eiv~lLl~~g~----------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~ 129 (743)
T TIGR00870 60 AIENENLELTELLLNLSC----------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129 (743)
T ss_pred HHhcChHHHHHHHHhCCC----------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence 455556777776665442 2234556788777643321 1111111 011234689
Q ss_pred hHHHHHHhCCHHHHHHHHhhcCCCCccccC--------------cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC
Q psy633 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLD--------------ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD 270 (300)
Q Consensus 205 t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~ 270 (300)
||||.|+..+..+++++|++ .|++++.++ ..|.||||+|+..|+.+++++|++ .|+|+|.+|..
T Consensus 130 TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~ 207 (743)
T TIGR00870 130 TALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSL 207 (743)
T ss_pred cHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhh
Confidence 99999999888889999988 899998653 258999999999999999999999 99999999999
Q ss_pred CCcHHHHHHhcC---------cHHHHHHHHHcCCCC
Q psy633 271 GDYGLDYAKAIE---------HTDLIEYLVNSGAHS 297 (300)
Q Consensus 271 g~TpL~~A~~~g---------~~~iv~~Ll~~ga~~ 297 (300)
|+||||+|+..+ ...+.+++++.+++.
T Consensus 208 g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~ 243 (743)
T TIGR00870 208 GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL 243 (743)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999987 344667777766553
No 81
>KOG0507|consensus
Probab=99.36 E-value=2.7e-12 Score=117.44 Aligned_cols=165 Identities=14% Similarity=0.043 Sum_probs=125.3
Q ss_pred cchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----C
Q psy633 121 YNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----E 196 (300)
Q Consensus 121 ~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~ 196 (300)
.++..-..+++.+. +++++..++++.|.+.-.. +...+ ..+..++|.|++.|+..+.+++.. .
T Consensus 42 ~n~qd~~gfTalhh-------a~Lng~~~is~llle~ea~-----ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~ 108 (854)
T KOG0507|consen 42 HNLQDYSGFTLLHH-------AVLNGQNQISKLLLDYEAL-----LDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDIL 108 (854)
T ss_pred ccccCccchhHHHH-------HHhcCchHHHHHHhcchhh-----hhhhh-ccCcceEEehhhcCcchHHHHHHhcccCC
Confidence 33444445555554 7888888888877654322 23333 677788999999999855555432 3
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC--------ccccC
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--------VNVTD 268 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~--------~~~~d 268 (300)
+..+..|.||||.|+..++.+++.+|+. +++++-.+|..+.|+|-+||+.|..++|++|+. ...+ -..++
T Consensus 109 na~~~e~~tplhlaaqhgh~dvv~~Ll~-~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~-~~~~~~~~~~~~~~~~~ 186 (854)
T KOG0507|consen 109 NAVNIENETPLHLAAQHGHLEVVFYLLK-KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQ-KKFPVQSSLRVGDIKRP 186 (854)
T ss_pred CcccccCcCccchhhhhcchHHHHHHHh-cCCCccccCcccccHHHHHHHhhhhHHHHHHhh-hccchhhcccCCCCCCC
Confidence 5567789999999999888899999998 899999999999999999999999999999987 3221 22344
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 269 SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 269 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
-.+-+|||+|+.+||.+|++.|++.|.|+|.+
T Consensus 187 ~~~~~plHlaakngh~~~~~~ll~ag~din~~ 218 (854)
T KOG0507|consen 187 FPAIYPLHLAAKNGHVECMQALLEAGFDINYT 218 (854)
T ss_pred CCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence 56778999999999999999999999998853
No 82
>KOG1710|consensus
Probab=99.34 E-value=5.5e-12 Score=103.31 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=68.1
Q ss_pred cCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC
Q psy633 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272 (300)
Q Consensus 194 ~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~ 272 (300)
.+.+.+|..|.++|..|+..|...++++|+. .|+|+|.. +..+.||||+|+..|+.+++++|++ .|+.+...+.-|+
T Consensus 36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllld-aGa~~~~vNsvgr 113 (396)
T KOG1710|consen 36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLD-AGARMYLVNSVGR 113 (396)
T ss_pred hhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHHcCCchHHHHHHh-ccCccccccchhh
Confidence 3356677778887766655444444555555 57777653 4447788888888888888888887 8888877787888
Q ss_pred cHHHHHHhcCcHHHHHHHH
Q psy633 273 YGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 273 TpL~~A~~~g~~~iv~~Ll 291 (300)
|+-..|+.-||.+||.+.-
T Consensus 114 TAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 114 TAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred hHHHHHHHhcchHHHHHHh
Confidence 8888888888888777653
No 83
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.32 E-value=5e-12 Score=80.24 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=44.3
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHH
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 257 (300)
|.|++|+|+..+..++.++|.+ .|.+++.+|..|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 5799999999888888888888 69999999999999999999999999999996
No 84
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=102.51 Aligned_cols=99 Identities=30% Similarity=0.375 Sum_probs=81.0
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHh-hcCCCCccccCcCCchHHHHHHHCCC-----HHHHHHHHhhcCC---CccccC
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLT-KLKDFNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGA---DVNVTD 268 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~-~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~g~---~~~~~d 268 (300)
..+..+.++++.++..+...+..++. .....+ .++..|.||||+|+..|+ .+++++||+ .|+ ..+.+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~ 144 (235)
T COG0666 68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVN--AKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRD 144 (235)
T ss_pred cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc--cccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccC
Confidence 34455778888887766655554444 322334 368889999999999999 999999999 999 677779
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 269 SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 269 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
..|+||||+|+..|+.+++++|++.|++++.
T Consensus 145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~ 175 (235)
T COG0666 145 EDGNTPLHWAALNGDADIVELLLEAGADPNS 175 (235)
T ss_pred CCCCchhHHHHHcCchHHHHHHHhcCCCCcc
Confidence 9999999999999999999999999999875
No 85
>KOG0515|consensus
Probab=99.30 E-value=5.7e-12 Score=110.88 Aligned_cols=94 Identities=24% Similarity=0.233 Sum_probs=83.2
Q ss_pred CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcH
Q psy633 196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYG 274 (300)
Q Consensus 196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~Tp 274 (300)
...-++.|-|+||-|..+++-+|+++|+. .|+++|..|.+||||||+|+..+++.+|+.|++ .|+.|-+.. .++.||
T Consensus 576 pSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe-~GaavfAsTlSDmeTa 653 (752)
T KOG0515|consen 576 PSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVPMCKQLVE-SGAAVFASTLSDMETA 653 (752)
T ss_pred CCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchHHHHHHHh-ccceEEeeecccccch
Confidence 35567889999999988888888888888 899999999999999999999999999999999 999888776 788999
Q ss_pred HHHH--HhcCcHHHHHHHH
Q psy633 275 LDYA--KAIEHTDLIEYLV 291 (300)
Q Consensus 275 L~~A--~~~g~~~iv~~Ll 291 (300)
..-+ ...|+..|.+||.
T Consensus 654 ~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 654 AEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred hhhcchhhhhHHHHHHHHH
Confidence 8765 3458999999996
No 86
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.29 E-value=1.2e-11 Score=92.28 Aligned_cols=116 Identities=27% Similarity=0.389 Sum_probs=94.4
Q ss_pred CCCCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 174 SGSKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 174 ~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
+.++++.|+..|.. .+..++.. ....+..|.+++|.|+..+...+.++|.. .+..++..+..|.||+|+|+..++
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~ 85 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAARNGN 85 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCc
Confidence 34556666666664 22222211 24567788999999988776777887777 688888899999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 291 (300)
.+++++|+. .+.+++..+..|.|||++|...++.+++++|+
T Consensus 86 ~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 86 LDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 999999999 99999999999999999999999999999985
No 87
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.29 E-value=5.2e-12 Score=110.56 Aligned_cols=90 Identities=18% Similarity=0.324 Sum_probs=75.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|++|+.|+++||||||+|.++++|.+|++ +++..+.+++|+|..+.+..... ...
T Consensus 136 ~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~----~~~----------------- 194 (346)
T TIGR01659 136 TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESI----KDT----------------- 194 (346)
T ss_pred EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccccc----ccc-----------------
Confidence 68999999999999999999999999999998 99999999999999886543211 111
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..||.+|+..++++++.++|..|+.+....+.
T Consensus 195 --~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~ 226 (346)
T TIGR01659 195 --NLYVTNLPRTITDDQLDTIFGKYGQIVQKNIL 226 (346)
T ss_pred --eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEe
Confidence 23899999999999999999999987654443
No 88
>KOG0145|consensus
Probab=99.24 E-value=1e-11 Score=99.98 Aligned_cols=93 Identities=18% Similarity=0.359 Sum_probs=81.8
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F 79 (300)
.+|++++|+-||.|-|||||.|.+++++++|+. ++|-.+..+.|+|..|.|.....+.+
T Consensus 69 EScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~a-------------------- 128 (360)
T KOG0145|consen 69 ESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDA-------------------- 128 (360)
T ss_pred eeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhccc--------------------
Confidence 478999999999999999999999999999999 99999999999999998776554432
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 116 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~ 116 (300)
..||.+++..++..+++.+|..|+++.....-.+
T Consensus 129 ---NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~d 162 (360)
T KOG0145|consen 129 ---NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVD 162 (360)
T ss_pred ---ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhh
Confidence 2299999999999999999999999887665544
No 89
>KOG1710|consensus
Probab=99.23 E-value=3.8e-11 Score=98.47 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=85.3
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHH
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDY 277 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~ 277 (300)
.|.....+|.....++.+....||.. --.+|..|..|+|+|..|+..|+.++|++||+ .|+|+|... ..+.||||+
T Consensus 9 ld~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmF 85 (396)
T KOG1710|consen 9 LDAPKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMF 85 (396)
T ss_pred ccchhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHH
Confidence 34445566777778888888888766 45689999999999999999999999999999 999999874 689999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCC
Q psy633 278 AKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 278 A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..|+.++.++|++.||....
T Consensus 86 AALSGn~dvcrllldaGa~~~~ 107 (396)
T KOG1710|consen 86 AALSGNQDVCRLLLDAGARMYL 107 (396)
T ss_pred HHHcCCchHHHHHHhccCcccc
Confidence 9999999999999999998653
No 90
>KOG0506|consensus
Probab=99.20 E-value=1.6e-11 Score=106.73 Aligned_cols=87 Identities=29% Similarity=0.449 Sum_probs=81.7
Q ss_pred hHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH
Q psy633 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 284 (300)
Q Consensus 205 t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~ 284 (300)
.++++|..|+...+++++.. |.+++..|.+.+|+||.|+..||++++++||..++.+++.+|..|+|||.-|...+|.
T Consensus 509 ~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~ 586 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK 586 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence 45667777999999999998 9999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHc
Q psy633 285 DLIEYLVNS 293 (300)
Q Consensus 285 ~iv~~Ll~~ 293 (300)
+++++|-+.
T Consensus 587 ~v~k~L~~~ 595 (622)
T KOG0506|consen 587 EVVKLLEEA 595 (622)
T ss_pred HHHHHHHHH
Confidence 999999864
No 91
>KOG0818|consensus
Probab=99.19 E-value=7.6e-11 Score=103.09 Aligned_cols=84 Identities=29% Similarity=0.372 Sum_probs=76.4
Q ss_pred HHHH-HhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH
Q psy633 207 YEWA-KEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 284 (300)
Q Consensus 207 l~~a-~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~ 284 (300)
||.+ ..++.+.+.++|.. |+++|..+.. |.||||.|+..|+..-+++|+- +|||+++.|.+|.||+.+|...||.
T Consensus 137 LhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 137 LHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCch
Confidence 5554 45888999998887 9999998876 9999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHc
Q psy633 285 DLIEYLVNS 293 (300)
Q Consensus 285 ~iv~~Ll~~ 293 (300)
++++.|++.
T Consensus 214 ~laeRl~e~ 222 (669)
T KOG0818|consen 214 ELAERLVEI 222 (669)
T ss_pred HHHHHHHHH
Confidence 999988863
No 92
>KOG4214|consensus
Probab=99.19 E-value=4.9e-11 Score=81.26 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=68.9
Q ss_pred cCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
..|++|||+|+..+...+.++|+. -|++++.+|..|-|||..|+..||.++|++||+ .|++-..+..+|.+.+..+
T Consensus 32 ~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~-~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 32 YGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQ-NGADRTIHAPDGTALIEAT 107 (117)
T ss_pred hCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHHHHHHHH-cCcccceeCCCchhHHhhc
Confidence 478999999999888888888888 799999999999999999999999999999999 9999999888888766543
No 93
>KOG0131|consensus
Probab=99.19 E-value=2.4e-11 Score=92.86 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=75.8
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F 79 (300)
+++++++|+.|..++|||||+|.++|+++=|++ ++...+-||+|+|+.+..... +....
T Consensus 37 v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~----nl~vg---------------- 96 (203)
T KOG0131|consen 37 VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQK----NLDVG---------------- 96 (203)
T ss_pred eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccc----ccccc----------------
Confidence 357899999999999999999999999999999 899999999999998862211 11110
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
|..|++++...+|+..+.+.|..|+++..-+-
T Consensus 97 --anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~ 128 (203)
T KOG0131|consen 97 --ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPK 128 (203)
T ss_pred --ccccccccCcchhHHHHHHHHHhccccccCCc
Confidence 23389999999999999999999999887554
No 94
>PF13606 Ank_3: Ankyrin repeat
Probab=99.18 E-value=3.3e-11 Score=66.04 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=23.6
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 270 DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 270 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+||||+||..|+.++|++|+++|+|||.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 477888888888888888888888888763
No 95
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.17 E-value=2.4e-11 Score=77.60 Aligned_cols=44 Identities=34% Similarity=0.601 Sum_probs=26.6
Q ss_pred HHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 256 LIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 256 Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
||+ .| +++|.+|..|.||||+|+..|+.+++++|++.|+|++++
T Consensus 1 LL~-~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~ 45 (56)
T PF13857_consen 1 LLE-HGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAK 45 (56)
T ss_dssp ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT--
T ss_pred CCc-cCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCC
Confidence 566 67 999999999999999999999999999999999999863
No 96
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.17 E-value=6.2e-11 Score=109.60 Aligned_cols=100 Identities=18% Similarity=0.301 Sum_probs=74.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|++|+.||++||||||+|.+.+++++|++ +++..|+||.|+|.......... .... ....... .
T Consensus 136 sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~--~~~~----~~~~~~~------~ 203 (612)
T TIGR01645 136 SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ--PIID----MVQEEAK------K 203 (612)
T ss_pred EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccc--cccc----ccccccc------c
Confidence 68899999999999999999999999999998 99999999999998654221100 0000 0000000 0
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
....||++++..++++++.++|..|+.+.....
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl 236 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL 236 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE
Confidence 123589999999999999999999998765443
No 97
>KOG0149|consensus
Probab=99.16 E-value=3.4e-11 Score=95.87 Aligned_cols=50 Identities=36% Similarity=0.645 Sum_probs=46.6
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
++++|+.|+.||||||||||||+|.+++.+|++-....|+||+..++.|.
T Consensus 40 ~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 40 VEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 46899999999999999999999999999999988899999999998875
No 98
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.15 E-value=6.1e-11 Score=105.41 Aligned_cols=89 Identities=21% Similarity=0.375 Sum_probs=75.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|++|+.||++||||||+|.++++|.+|++ +++..|.|+.|.|..+.++....+ .
T Consensus 32 ~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~----~------------------ 89 (352)
T TIGR01661 32 SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIK----G------------------ 89 (352)
T ss_pred EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccc----c------------------
Confidence 68999999999999999999999999999998 999999999999998876543211 1
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
+..|+++++..++++++..+|..|+.+....+
T Consensus 90 -~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~ 121 (352)
T TIGR01661 90 -ANLYVSGLPKTMTQHELESIFSPFGQIITSRI 121 (352)
T ss_pred -ceEEECCccccCCHHHHHHHHhccCCEEEEEE
Confidence 12389999999999999999999987754443
No 99
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.15 E-value=6.8e-11 Score=90.67 Aligned_cols=53 Identities=36% Similarity=0.707 Sum_probs=49.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|++|+.|+++||||||+|.++++|++|++ ++++.|+|++|+|+.+.++..
T Consensus 63 ~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 63 DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 67899999999999999999999999999998 999999999999999886644
No 100
>KOG0125|consensus
Probab=99.13 E-value=4.8e-11 Score=99.19 Aligned_cols=57 Identities=30% Similarity=0.573 Sum_probs=49.5
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK 59 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~ 59 (300)
+||+|+++ + +-|||||||||++.+++++|-+ ++|..++||+|+|+.|++|-...|++
T Consensus 124 ldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~ 181 (376)
T KOG0125|consen 124 LDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKK 181 (376)
T ss_pred eeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcc
Confidence 47899988 3 4599999999999999999998 99999999999999999985554443
No 101
>KOG4205|consensus
Probab=99.12 E-value=2.6e-11 Score=103.24 Aligned_cols=92 Identities=28% Similarity=0.473 Sum_probs=79.9
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhh--hhhhhhhhhhhhhhhhhhH
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKK--IETKETASFSRMAENMEDR 78 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 78 (300)
.+|.||+|+.|+++||||||+|++++.+.+++....|.|+||.|++++|.|+..+.+.. ....++
T Consensus 34 ~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkki------------- 100 (311)
T KOG4205|consen 34 TDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKI------------- 100 (311)
T ss_pred eeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEE-------------
Confidence 47899999999999999999999999999999989999999999999999987654432 234555
Q ss_pred HHHHhhhhcccccCCChHHHHHHHHhhcccccc
Q psy633 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 79 F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
|+.+++..+.++++.+.|..|+.+...
T Consensus 101 ------FvGG~~~~~~e~~~r~yfe~~g~v~~~ 127 (311)
T KOG4205|consen 101 ------FVGGLPPDTTEEDFKDYFEQFGKVADV 127 (311)
T ss_pred ------EecCcCCCCchHHHhhhhhccceeEee
Confidence 899999999999999999999965543
No 102
>KOG0117|consensus
Probab=99.11 E-value=1.3e-10 Score=100.45 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=45.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee-cCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL-EGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~-~g~~~~v~~a~~ 51 (300)
++++|+|+.+|.+|||+||+|.+.++|++|++ +|.++| .||.|.|+.+..
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 67999999999999999999999999999999 888877 789988887764
No 103
>KOG3676|consensus
Probab=99.07 E-value=3.9e-10 Score=104.59 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred cCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc---------C--------------cCCchHHHHHHHCCCHHHHHHHH
Q psy633 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL---------D--------------ENGLNCLHWACDRGHLKVVQHLI 257 (300)
Q Consensus 201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~---------d--------------~~g~t~Lh~A~~~g~~~~v~~Ll 257 (300)
..|.|+||.|..+....++.+|+. .|+|++++ | ..|..||.+||.-++.+|+++|+
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 346666666666555555555555 56666543 1 12455666666666666666666
Q ss_pred hhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 258 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 258 ~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+ +|||++++|..|+|.||..+.+-..++-.+++++||+
T Consensus 261 ~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 261 A-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN 298 (782)
T ss_pred h-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 6666666666666666666666666666666666665
No 104
>KOG4369|consensus
Probab=99.05 E-value=6.8e-11 Score=112.21 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=108.0
Q ss_pred cccccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHH
Q psy633 169 DESQESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHW 243 (300)
Q Consensus 169 ~~~~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~ 243 (300)
....+-.+.|-.+|.+|+..+ ..++.. ...+|..|.++|..|+.+++..+++.|+. ..++++.. |+.+.|+|.+
T Consensus 752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSl 830 (2131)
T KOG4369|consen 752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSL 830 (2131)
T ss_pred ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEE
Confidence 334445566778999998733 333333 46688899999999999999888888887 78888764 6668999999
Q ss_pred HHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 244 A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
||..|+.++|++||. .|++-..++-...|||.+|...|+.+||.+|+..|++||.+
T Consensus 831 acsggr~~vvelLl~-~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr 886 (2131)
T KOG4369|consen 831 ACSGGRTRVVELLLN-AGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR 886 (2131)
T ss_pred ecCCCcchHHHHHHH-hhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence 999999999999999 99999999999999999999999999999999999998753
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=5.3e-10 Score=74.91 Aligned_cols=42 Identities=14% Similarity=0.367 Sum_probs=39.2
Q ss_pred EeeeCCC--CCccCeEEEEecChHHHHHHHh-cCCceecCcccee
Q psy633 5 VMFDKNT--GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI 46 (300)
Q Consensus 5 ~~~d~~t--~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v 46 (300)
|+.|+.+ |++||||||+|.++++|.+|+. +++..++||+|.+
T Consensus 25 v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 25 IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 6788877 9999999999999999999999 9999999999876
No 106
>KOG0705|consensus
Probab=99.03 E-value=7.1e-10 Score=98.79 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=79.2
Q ss_pred cCcchHHHHHHhCCHHHHHHHHhhcCCCCccc--cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ--LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~--~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
..|..+|.+.+..++..+.-||.......+|. .+.+|+|+||+||..|++.+.++|+- +|+|+.++|..|+|||.||
T Consensus 623 ~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~ya 701 (749)
T KOG0705|consen 623 PLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYA 701 (749)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhH
Confidence 45666777777778777766665512223332 45568999999999999999999998 9999999999999999999
Q ss_pred HhcCcHHHHHHHHHcCCCC
Q psy633 279 KAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~~ga~~ 297 (300)
.+.|..+|+.+|+.+|+-.
T Consensus 702 r~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hhcccHHHHHHHHHcCCCc
Confidence 9999999999999999854
No 107
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.01 E-value=9.4e-10 Score=105.14 Aligned_cols=81 Identities=21% Similarity=0.130 Sum_probs=73.6
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhc-------CCCccccCC
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-------GADVNVTDS 269 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-------g~~~~~~d~ 269 (300)
+..+..|.||||+|+..++..++++|+. .|++++..|..|+||||+|+..|+.+++++|+. + |++++..+.
T Consensus 109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~ga~~~~~~~ 186 (664)
T PTZ00322 109 NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLSR-HSQCHFELGANAKPDSF 186 (664)
T ss_pred CCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHh-CCCcccccCCCCCcccc
Confidence 4456789999999999999999999998 899999999999999999999999999999999 7 999999999
Q ss_pred CCCcHHHHHH
Q psy633 270 DGDYGLDYAK 279 (300)
Q Consensus 270 ~g~TpL~~A~ 279 (300)
.|.+|+..+.
T Consensus 187 ~g~~~~~~~~ 196 (664)
T PTZ00322 187 TGKPPSLEDS 196 (664)
T ss_pred CCCCccchhh
Confidence 8988877664
No 108
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=99.01 E-value=4.4e-10 Score=63.34 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=22.9
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 270 DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 270 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+||||+|+..|+.+++++|+++||+++.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA 30 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 477777777777777777777777777765
No 109
>PF13606 Ank_3: Ankyrin repeat
Probab=98.99 E-value=5.8e-10 Score=61.06 Aligned_cols=30 Identities=47% Similarity=0.728 Sum_probs=28.2
Q ss_pred CCchHHHHHHHCCCHHHHHHHHhhcCCCccc
Q psy633 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV 266 (300)
Q Consensus 236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~ 266 (300)
+|+||||+||..|+.+++++||+ .|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence 48999999999999999999999 9999984
No 110
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.99 E-value=1e-09 Score=103.49 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=74.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|++|+.|++++|||||+|.+.++|.+|++ +++..|+|+.|+|.++....... +. ...
T Consensus 29 ~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~-~~-~~~----------------- 89 (562)
T TIGR01628 29 SVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR-RS-GVG----------------- 89 (562)
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc-cc-CCC-----------------
Confidence 68999999999999999999999999999998 89999999999998875322111 10 011
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
..||++++.+++++++.++|..|+.+.....
T Consensus 90 --~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i 120 (562)
T TIGR01628 90 --NIFVKNLDKSVDNKALFDTFSKFGNILSCKV 120 (562)
T ss_pred --ceEEcCCCccCCHHHHHHHHHhcCCcceeEe
Confidence 2389999999999999999999998765444
No 111
>KOG3676|consensus
Probab=98.98 E-value=1.3e-09 Score=101.12 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=84.8
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC--ccccCCCCCcHHHHHH
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--VNVTDSDGDYGLDYAK 279 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~--~~~~d~~g~TpL~~A~ 279 (300)
-|..||..|+.-+.++++++|.. .|+|++.+|..|+|.||..+..-..++..+++. +|++ ...+|+.|-|||.+|+
T Consensus 239 fGEyPLSfAAC~nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAa 316 (782)
T KOG3676|consen 239 FGEYPLSFAACTNQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAA 316 (782)
T ss_pred eccCchHHHHHcCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHH
Confidence 47789999988888889999998 899999999999999999999989999999999 9999 9999999999999999
Q ss_pred hcCcHHHHHHHHHc
Q psy633 280 AIEHTDLIEYLVNS 293 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ 293 (300)
.-|..++-+.+++.
T Consensus 317 klGk~emf~~ile~ 330 (782)
T KOG3676|consen 317 KLGKKEMFQHILER 330 (782)
T ss_pred HhhhHHHHHHHHHh
Confidence 99999999999987
No 112
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.95 E-value=1.4e-09 Score=100.12 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=76.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
+|.|+.|+.||++||||||+|.+.++|.+|+.+++..+.|++|.|..+........... .... .. .. ..
T Consensus 118 ~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~-~~~~---~~-~p------~~ 186 (457)
T TIGR01622 118 DVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAA-THQP---GD-IP------NF 186 (457)
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcc-cccC---CC-CC------CC
Confidence 68899999999999999999999999999999999999999999987653322111100 0000 00 00 02
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.+.||++++..++++++.++|..|+.+....+.
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~ 219 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH 219 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 335899999999999999999999987654443
No 113
>KOG0111|consensus
Probab=98.95 E-value=3.5e-10 Score=89.03 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=49.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.++.|.+++++||||||+|...|++.+||. |++.++-||.|+|..|.|..
T Consensus 39 dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 39 DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 67899999999999999999999999999998 99999999999999998753
No 114
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.95 E-value=1.5e-09 Score=61.19 Aligned_cols=33 Identities=42% Similarity=0.763 Sum_probs=31.1
Q ss_pred CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC
Q psy633 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269 (300)
Q Consensus 236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~ 269 (300)
+|+||||+|+..|+.+++++||+ .|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence 58999999999999999999999 9999999874
No 115
>KOG0127|consensus
Probab=98.90 E-value=1.5e-09 Score=96.13 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=79.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhh-hh-hhhhh-hhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKE-TA-SFSRM-AENMED 77 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~-~~-~~~~~-~~~l~~ 77 (300)
.|.|++++.++.+||||||+|.-+|++++|+. .....++||.+.|..|++|..........++ .. .+.+- .....-
T Consensus 34 ~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v 113 (678)
T KOG0127|consen 34 HAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKV 113 (678)
T ss_pred eeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhc
Confidence 47899999999999999999999999999999 8899999999999999987643311100000 00 00000 000101
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.-.+....++++++++..+++..+|+.|+.+.....
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I 149 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI 149 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc
Confidence 111445588999999999999999999998765443
No 116
>KOG4369|consensus
Probab=98.86 E-value=1.1e-09 Score=104.25 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHH
Q psy633 143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDML 218 (300)
Q Consensus 143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v 218 (300)
|-.+.+.+|+.|...-.+ +....+....+.+..+|..|...+.. +++. ...++-...|||..|+.|+...+
T Consensus 798 atagh~tvV~~llk~ha~-----veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~i 872 (2131)
T KOG4369|consen 798 ATAGHITVVQDLLKAHAD-----VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKI 872 (2131)
T ss_pred cccCchHHHHHHHhhhhh-----hhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHH
Confidence 334455555555444333 34444455667788888888873333 3322 45566777899999999999888
Q ss_pred HHHHhhcCCCCccccC--cCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc-----------------------------
Q psy633 219 VKQLTKLKDFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT----------------------------- 267 (300)
Q Consensus 219 ~~ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~----------------------------- 267 (300)
+++|+. .|+.||.+. ..|-.||++|+.+||.+.+..||+ .|.|||+.
T Consensus 873 I~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~ll~-~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a 950 (2131)
T KOG4369|consen 873 IHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ-PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA 950 (2131)
T ss_pred HHHHhh-cccccccccccccCcchhhhhhhccccHHHHHHhc-ccchhccccccccccceeeccccCcchHHHHHHHHhh
Confidence 888888 888887764 347888888888888887777777 77777654
Q ss_pred -----CCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 268 -----DSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 268 -----d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
-..|.|||+-++..|..++-++||..|||+|.
T Consensus 951 nvehRaktgltplme~AsgGyvdvg~~li~~gad~na 987 (2131)
T KOG4369|consen 951 NVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA 987 (2131)
T ss_pred hhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence 23466666666666666666666666666653
No 117
>KOG0522|consensus
Probab=98.84 E-value=8.4e-09 Score=91.47 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=73.2
Q ss_pred hHHHHHHh-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633 205 NIYEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 283 (300)
Q Consensus 205 t~l~~a~~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~ 283 (300)
.++|++.. .+...+.+.|.......++..|..|.||||+|+..||...++.|+. .|+++..+|+.||+|||.|+..|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCC
Confidence 35777755 4555566655542566788999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy633 284 TDLIEYLVN 292 (300)
Q Consensus 284 ~~iv~~Ll~ 292 (300)
.+++..++.
T Consensus 101 ~q~i~~vlr 109 (560)
T KOG0522|consen 101 EQIITEVLR 109 (560)
T ss_pred HHHHHHHHH
Confidence 988777664
No 118
>KOG4207|consensus
Probab=98.81 E-value=3.2e-09 Score=82.93 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=47.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+|.|+.|+-|+.+|||+||-|.+..+|++|++ |+|..++|+.+.|..|..
T Consensus 42 DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 42 DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 78999999999999999999999999999999 999999999999998874
No 119
>KOG0783|consensus
Probab=98.81 E-value=1.8e-09 Score=100.05 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=54.5
Q ss_pred CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633 196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 274 (300)
Q Consensus 196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp 274 (300)
.+..|..|+++||.++.-+...+.+.|++ +|++++.+|.. |+||||-|...|+++++-+||. +|+.+..+|.+|..|
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~Dkeglsp 122 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKDKEGLSP 122 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCceEEecccCCCH
Confidence 34456666666666666666666666666 56666666655 6677777666677776666666 666666666666666
Q ss_pred HHHHHh
Q psy633 275 LDYAKA 280 (300)
Q Consensus 275 L~~A~~ 280 (300)
|..-++
T Consensus 123 lq~~~r 128 (1267)
T KOG0783|consen 123 LQFLSR 128 (1267)
T ss_pred HHHHhh
Confidence 666554
No 120
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.76 E-value=1.6e-08 Score=95.39 Aligned_cols=93 Identities=18% Similarity=0.385 Sum_probs=72.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|+.| .+|++||||||.|.+++++.+|++ +++..++|+.|.|....++......... .|
T Consensus 117 ~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~----------------~~- 178 (562)
T TIGR01628 117 SCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLK----------------KF- 178 (562)
T ss_pred eeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccccccc----------------CC-
Confidence 5788888 589999999999999999999998 9999999999999776654332100000 00
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
...||++++.+++++++.++|..|+.+....+
T Consensus 179 -~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i 210 (562)
T TIGR01628 179 -TNLYVKNLDPSVNEDKLRELFAKFGEITSAAV 210 (562)
T ss_pred -CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 12389999999999999999999997765443
No 121
>KOG0144|consensus
Probab=98.75 E-value=1.9e-08 Score=86.92 Aligned_cols=90 Identities=18% Similarity=0.380 Sum_probs=72.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecC--ccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEG--SRLSIQPSDSHNSQVKKKIETKETASFSRMAENMED 77 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (300)
+|.|++|+.||.+||+|||+|.+.+++.+|+. + +..+|-| .+|.|+.|+..+... ....++
T Consensus 63 einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~---~~e~KL------------ 127 (510)
T KOG0144|consen 63 EINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI---VEERKL------------ 127 (510)
T ss_pred EEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc---ccchhh------------
Confidence 68999999999999999999999999999998 4 5677777 578888886433222 222233
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||+.+....++.++.++|..|+++.....
T Consensus 128 -------Fvg~lsK~~te~evr~iFs~fG~Ied~~i 156 (510)
T KOG0144|consen 128 -------FVGMLSKQCTENEVREIFSRFGHIEDCYI 156 (510)
T ss_pred -------hhhhccccccHHHHHHHHHhhCccchhhh
Confidence 89999999999999999999998875443
No 122
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.75 E-value=1.5e-08 Score=93.80 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=62.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceec-CccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE-GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~-g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F 79 (300)
+++||+| .+|+|||||||+|.+.++|++|++ +++..|. |+.+.|..+.. ...+
T Consensus 87 ~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~----------~~rL-------------- 141 (578)
T TIGR01648 87 ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD----------NCRL-------------- 141 (578)
T ss_pred EEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc----------Ccee--------------
Confidence 6889999 899999999999999999999999 8888884 78877765532 1122
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhc
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYK 106 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k 106 (300)
||++++...+++++++.|..+.
T Consensus 142 -----FVgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 142 -----FVGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred -----EeecCCcchhhHHHHHHhhccc
Confidence 8999999999999999988774
No 123
>KOG0124|consensus
Probab=98.73 E-value=2.1e-08 Score=84.77 Aligned_cols=94 Identities=17% Similarity=0.317 Sum_probs=70.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
++.+-.|+.|+++|||+||+|+-+|+++-|++ ||+..++||.|+|.+...... - ...+++.=+
T Consensus 142 SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQ--A--------------QpiID~vqe 205 (544)
T KOG0124|consen 142 SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ--A--------------QPIIDMVQE 205 (544)
T ss_pred eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcc--c--------------chHHHHHHH
Confidence 56777899999999999999999999999999 999999999999985431110 0 001111112
Q ss_pred HHh----hhhcccccCCChHHHHHHHHhhcccccc
Q psy633 81 QAC----DYLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 81 ~a~----~~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
.|. .||.++-..++++++...|..|+.+...
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 222 2666777889999999999999987643
No 124
>KOG0783|consensus
Probab=98.66 E-value=1.7e-08 Score=93.73 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+..++....+.-.|..|..|+|+||+|+..|...++++||. +|++++.+| ..|+||||-|..+|+++|+-+||++|+.
T Consensus 33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S 111 (1267)
T KOG0783|consen 33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS 111 (1267)
T ss_pred HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence 44455542334468899999999999999999999999999 899999999 5899999999999999999999999986
Q ss_pred CC
Q psy633 297 SS 298 (300)
Q Consensus 297 ~~ 298 (300)
..
T Consensus 112 L~ 113 (1267)
T KOG0783|consen 112 LR 113 (1267)
T ss_pred eE
Confidence 53
No 125
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.63 E-value=6.5e-08 Score=86.00 Aligned_cols=51 Identities=24% Similarity=0.558 Sum_probs=44.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~ 52 (300)
.+.++.|+.+|.+||||||+|.+.+++.+|++ +++..+.| ++|.|..+...
T Consensus 118 ~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 118 TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 46788999999999999999999999999998 99999887 56777777543
No 126
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.61 E-value=6.3e-08 Score=89.96 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=48.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|+|++|+.||++||||||+|.+.+++.+|++ +|+..|+|+.|+|.++.+.
T Consensus 233 svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 233 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 68899999999999999999999999999999 9999999999999998854
No 127
>KOG0511|consensus
Probab=98.60 E-value=8.2e-08 Score=81.93 Aligned_cols=62 Identities=29% Similarity=0.313 Sum_probs=34.6
Q ss_pred HHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 209 WAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 209 ~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
++..|+.+.+..++.. |.++|..|....+||.+|+..||.++|++||+ .||-...-..+|.-
T Consensus 43 acR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~R 104 (516)
T KOG0511|consen 43 ACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDR 104 (516)
T ss_pred HhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcch
Confidence 3334555544444433 66666666666666666666666666666666 66544443344443
No 128
>KOG0226|consensus
Probab=98.59 E-value=2.7e-08 Score=80.28 Aligned_cols=53 Identities=26% Similarity=0.491 Sum_probs=49.1
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
.+|++|+.||+|+|||||.|.+..+..+|+. |+|..++.|+|....+.++..+
T Consensus 220 akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wkeRn 273 (290)
T KOG0226|consen 220 AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKERN 273 (290)
T ss_pred ccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHhhh
Confidence 5789999999999999999999999999998 9999999999999998887643
No 129
>KOG2384|consensus
Probab=98.56 E-value=2.2e-07 Score=72.10 Aligned_cols=69 Identities=26% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 227 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+.++|.+|..|||||+.|+..|..+.|.||+. .| +.+...|..|.+++.+|-..|+.++|.+|.+.-.+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 46889999999999999999999999999999 88 89999999999999999999999999999886443
No 130
>KOG0108|consensus
Probab=98.53 E-value=1e-07 Score=85.04 Aligned_cols=53 Identities=23% Similarity=0.590 Sum_probs=49.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+++++.|++||++|||||++|.+.+.+..|++ +++.+++||+++|.++.....
T Consensus 47 s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 47 SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 67899999999999999999999999999999 999999999999999876544
No 131
>KOG0123|consensus
Probab=98.53 E-value=1.5e-07 Score=83.14 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=76.2
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F 79 (300)
++++|.+|- | |-|||||.|.+++++.+|+. ++...+.|++|++-+++.....
T Consensus 26 ~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~------------------------ 78 (369)
T KOG0123|consen 26 LSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL------------------------ 78 (369)
T ss_pred eeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce------------------------
Confidence 478999998 6 99999999999999999999 9999999999999887644332
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCC
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP 118 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p 118 (300)
.|++++..++++.++.++|..|+++...++..+.-
T Consensus 79 ----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~ 113 (369)
T KOG0123|consen 79 ----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN 113 (369)
T ss_pred ----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC
Confidence 38999999999999999999999999877766543
No 132
>KOG4205|consensus
Probab=98.53 E-value=3.9e-08 Score=84.01 Aligned_cols=57 Identities=30% Similarity=0.574 Sum_probs=52.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKK 58 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~ 58 (300)
++.+|+|+.+.++||||||+|.+++++++++.+..|.|+|+.|+|++|.||......
T Consensus 126 ~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 126 DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhcccc
Confidence 578999999999999999999999999999999999999999999999999765443
No 133
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.49 E-value=2.4e-07 Score=61.74 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=39.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS 45 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~ 45 (300)
.+.++.+ .+++++|||||+|.+.+++++|++ +++..++|++|+
T Consensus 27 ~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 27 SIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 4677887 899999999999999999999999 999999998874
No 134
>KOG0113|consensus
Probab=98.46 E-value=2.5e-07 Score=76.47 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=46.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
.++|+.|+.||+|||||||+|+++.++..|.+ .++..|+|+.|-|..-..
T Consensus 130 rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 130 RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 47899999999999999999999999999999 899999999999887643
No 135
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.46 E-value=2.7e-07 Score=85.58 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=64.3
Q ss_pred eCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633 8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD 84 (300)
Q Consensus 8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~ 84 (300)
+..++++||||||+|.+++++..|+. +. ...+.|+.|.|..+.++.......... ..+.
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~------------------~k~L 236 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAK------------------VKIL 236 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccccccc------------------ccEE
Confidence 34578899999999999999999997 43 346899999999988764322111111 0123
Q ss_pred hhcccccCCChHHHHHHHHhh--ccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALY--KQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~--k~~~~ 110 (300)
||++++.+++++++.++|..| +.+..
T Consensus 237 fVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 237 YVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 899999999999999999999 66553
No 136
>KOG0520|consensus
Probab=98.46 E-value=1.3e-07 Score=90.44 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=54.7
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~ 279 (300)
...|++++|.++..+...+.+-+.+..+......|.+|.-.+|+ |..++.+++-+|+...|..++.+|..||||||||+
T Consensus 571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa 649 (975)
T KOG0520|consen 571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA 649 (975)
T ss_pred CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence 34456666666665555555555541133334444455555555 45555555555554456666666666666666666
Q ss_pred hcCcHHHHHHHHHcCCCC
Q psy633 280 AIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ga~~ 297 (300)
.+|+..++..|++.|++.
T Consensus 650 ~~G~e~l~a~l~~lga~~ 667 (975)
T KOG0520|consen 650 FRGREKLVASLIELGADP 667 (975)
T ss_pred hcCHHHHHHHHHHhcccc
Confidence 666666666666666554
No 137
>smart00360 RRM RNA recognition motif.
Probab=98.45 E-value=5.1e-07 Score=59.69 Aligned_cols=46 Identities=35% Similarity=0.661 Sum_probs=41.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 47 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~ 47 (300)
.+.++.++.+++++|||||+|.+.+++.+|++ +++..++|+.+.|.
T Consensus 25 ~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 25 SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 46788888899999999999999999999998 88899999988763
No 138
>KOG0126|consensus
Probab=98.44 E-value=5.7e-08 Score=74.56 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=45.8
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
++|.+++|+.||+|+||||.-|++..+---|+. ++|..|.||.|+|....
T Consensus 63 vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 63 VDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 478899999999999999999999999888887 99999999999998654
No 139
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.41 E-value=4.6e-07 Score=60.48 Aligned_cols=43 Identities=26% Similarity=0.622 Sum_probs=38.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS 45 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~ 45 (300)
.+.++.++. |+++|+|||+|.+++++.+|++ .+++.++|+.|+
T Consensus 27 ~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 27 KVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred eEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 467888877 9999999999999999999999 677999999874
No 140
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.41 E-value=5.3e-07 Score=83.37 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=66.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh--hh----------hhhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK--IE----------TKETASF 68 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~--~~----------~~~~~~~ 68 (300)
+|+|+++ +||||||+|.+.++|.+|+. ++++.|.|++|+|..+........+. .. .....++
T Consensus 305 ~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 379 (481)
T TIGR01649 305 RVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRF 379 (481)
T ss_pred EEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccC
Confidence 5677776 37999999999999999998 99999999999999876432111100 00 0000000
Q ss_pred hhhh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhcc
Q psy633 69 SRMA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 69 ~~~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
.... ..... .-.....|+++++.+++++++.++|..|+.
T Consensus 380 ~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 380 KKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred CCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 0000 00000 001234589999999999999999999997
No 141
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.39 E-value=4.5e-07 Score=79.67 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=46.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~ 52 (300)
++.|++|+.||++||||||+|.+.++|++|++ +++..++| ++|.|+.+..+
T Consensus 222 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 222 QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 57899999999999999999999999999999 99999877 68888888754
No 142
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.38 E-value=4.4e-07 Score=84.77 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=66.5
Q ss_pred eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhh--hhhh----hhhhhhhhhhhhhhhhHH
Q psy633 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK--KKIE----TKETASFSRMAENMEDRF 79 (300)
Q Consensus 6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~--~~~~----~~~~~~~~~~~~~l~~~F 79 (300)
+.+...++++|||||+|.+.++|..|+.+++..+.|+.|.|........... .... .............-...-
T Consensus 214 v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (509)
T TIGR01642 214 VSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLD 293 (509)
T ss_pred eEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCC
Confidence 4455567889999999999999999999999999999999976542211000 0000 000000000000000000
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhccccc
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
.....||++++..++++++.++|..|+.+..
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 1123589999999999999999999987654
No 143
>KOG0123|consensus
Probab=98.38 E-value=7.3e-07 Score=78.87 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=74.5
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F 79 (300)
++|+|++|. .| |||| ||.|++++++.+|+. +++..++|++|.|.....+......... .. .++
T Consensus 104 lS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~-~~~----------- 167 (369)
T KOG0123|consen 104 LSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK-KRF----------- 167 (369)
T ss_pred eEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh-hhh-----------
Confidence 489999995 46 9999 999999999999999 9999999999999998876543322211 11 001
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 116 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~ 116 (300)
+..++++.....+++.+..+|..|+.++.-.+..+
T Consensus 168 --t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~ 202 (369)
T KOG0123|consen 168 --TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD 202 (369)
T ss_pred --hhhheeccccccchHHHHHhhcccCcceEEEEeec
Confidence 11267777788899999999999998776555443
No 144
>KOG0782|consensus
Probab=98.34 E-value=8.8e-07 Score=79.41 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=69.8
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCC-CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDF-NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
+.+..++||+|+.-+..+++++++...+. .+++.|..|.|+||-|+..++..++.+|++ .|+.+...|..|.||-.-|
T Consensus 896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd-agasl~ktd~kg~tp~era 974 (1004)
T KOG0782|consen 896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD-AGASLRKTDSKGKTPQERA 974 (1004)
T ss_pred CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh-cchhheecccCCCChHHHH
Confidence 44556788888775555555555551222 346778888888888888888888888888 8888888888888888888
Q ss_pred HhcCcHHHHHHHHH
Q psy633 279 KAIEHTDLIEYLVN 292 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~ 292 (300)
-+.|..+++.||-+
T Consensus 975 qqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 975 QQAGDPDLAAYLES 988 (1004)
T ss_pred HhcCCchHHHHHhh
Confidence 88888888888865
No 145
>KOG0782|consensus
Probab=98.32 E-value=1.2e-06 Score=78.61 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=81.6
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCC--CccccCCCCCcHHHHHH
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGA--DVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~--~~~~~d~~g~TpL~~A~ 279 (300)
.+.++|.++..+++-.+.+.-.. |-++-.++.+-.|.||+|+..|+-++|+|||+ +|- .++..|..|.|+||-|+
T Consensus 866 iseeil~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyild-h~p~elld~~de~get~lhkaa 942 (1004)
T KOG0782|consen 866 ISEEILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILD-HGPSELLDMADETGETALHKAA 942 (1004)
T ss_pred ccHHHHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHh-cCCHHHHHHHhhhhhHHHHHHH
Confidence 34567888888998888877766 67777888889999999999999999999999 765 36778899999999999
Q ss_pred hcCcHHHHHHHHHcCCCCC
Q psy633 280 AIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ga~~~ 298 (300)
..++..+..+|++.||..-
T Consensus 943 ~~~~r~vc~~lvdagasl~ 961 (1004)
T KOG0782|consen 943 CQRNRAVCQLLVDAGASLR 961 (1004)
T ss_pred HhcchHHHHHHHhcchhhe
Confidence 9999999999999999753
No 146
>KOG0520|consensus
Probab=98.32 E-value=5.2e-07 Score=86.37 Aligned_cols=95 Identities=28% Similarity=0.437 Sum_probs=79.3
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccc------cCCC
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV------TDSD 270 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~------~d~~ 270 (300)
...+.++.-.+|.++.++.+..+.++.- .|..++.+|..||||||||+.+||..++..|+. .|++.+. .+-.
T Consensus 602 ~eld~d~qgV~hfca~lg~ewA~ll~~~-~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~ 679 (975)
T KOG0520|consen 602 LELDRDGQGVIHFCAALGYEWAFLPISA-DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIE-LGADPGAVTDPSPETPG 679 (975)
T ss_pred hhhcccCCChhhHhhhcCCceeEEEEee-cccccccccCCCCcccchHhhcCHHHHHHHHHH-hccccccccCCCCCCCC
Confidence 3455667778888888888877776665 799999999999999999999999999999998 8775443 3457
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHc
Q psy633 271 GDYGLDYAKAIEHTDLIEYLVNS 293 (300)
Q Consensus 271 g~TpL~~A~~~g~~~iv~~Ll~~ 293 (300)
|.|+-.+|..+|+..+..+|-+.
T Consensus 680 g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 680 GKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CCchhhhhhcccccchHHHHhhh
Confidence 99999999999999998888653
No 147
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.31 E-value=9.8e-07 Score=72.98 Aligned_cols=47 Identities=11% Similarity=0.333 Sum_probs=42.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~ 51 (300)
+|.|++|+. ++|||||+|.++++++.|+.+++..|.||.|.|..+..
T Consensus 33 ~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 33 YVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred EEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 678888864 57999999999999999999999999999999999863
No 148
>KOG3609|consensus
Probab=98.28 E-value=2.2e-06 Score=80.63 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred chHHHHHHhCCHHHHHHHHhhcCC--CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC--------------------
Q psy633 204 KNIYEWAKEGKLDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-------------------- 261 (300)
Q Consensus 204 ~t~l~~a~~~~~~~v~~ll~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-------------------- 261 (300)
.-.|.++-.|+...+.+.|..... .++|..|.-|+++|++|..+-+.+++++|++ .+
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~-~~~~~gdALL~aI~~~~v~~VE 105 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLD-TSSEEGDALLLAIAVGSVPLVE 105 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhc-CccccchHHHHHHHHHHHHHHH
Confidence 334445555555555555554222 3445555555555555555555555555555 32
Q ss_pred ------CCc----------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 262 ------ADV----------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 262 ------~~~----------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
... ...-..+-|||.+||.+++.||+++||.+|+++-
T Consensus 106 ~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 106 LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 111 1222457899999999999999999999999874
No 149
>KOG0521|consensus
Probab=98.27 E-value=8.2e-07 Score=85.25 Aligned_cols=88 Identities=28% Similarity=0.328 Sum_probs=77.1
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~ 281 (300)
.|.+++|.|+..+...+.++|+. .|+++|..|..|+||||.+...|+...+..|++ .|++.++.+.+|.+||++|...
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~~ 732 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAMEA 732 (785)
T ss_pred cccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhhh
Confidence 45789999999888888888888 899999999999999999999999999999999 9999999999999999999777
Q ss_pred CcHHHHHHHH
Q psy633 282 EHTDLIEYLV 291 (300)
Q Consensus 282 g~~~iv~~Ll 291 (300)
.+.+++-+|.
T Consensus 733 ~~~d~~~l~~ 742 (785)
T KOG0521|consen 733 ANADIVLLLR 742 (785)
T ss_pred ccccHHHHHh
Confidence 7777666554
No 150
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.25 E-value=2e-06 Score=79.52 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=63.5
Q ss_pred ccCeEEEEecChHHHHHHHh---cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633 14 SKGFGFVTFQNKEAVDKVFS---TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV 90 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~---~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~ 90 (300)
+||||||+|.+.++|.+|++ +++..|+|++|.|..+..+........ . +..... =.....+|.++.
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~-~-----~~~~~~-----~~~~~v~v~nl~ 105 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS-D-----FDSAGP-----NKVLRVIVENPM 105 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC-c-----ccCCCC-----CceEEEEEcCCC
Confidence 57899999999999999997 378999999999999875532111100 0 000000 001123788999
Q ss_pred cCCChHHHHHHHHhhcccccccCC
Q psy633 91 KKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 91 ~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..++++++.++|..|+.+....+.
T Consensus 106 ~~vt~~~L~~~F~~~G~V~~v~i~ 129 (481)
T TIGR01649 106 YPITLDVLYQIFNPYGKVLRIVTF 129 (481)
T ss_pred CCCCHHHHHHHHhccCCEEEEEEE
Confidence 899999999999999988765543
No 151
>PLN03213 repressor of silencing 3; Provisional
Probab=98.24 E-value=1.2e-06 Score=77.13 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=42.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecCh--HHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNK--EAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~--~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|+ ++|| ||||||+|.++ .++.+||. +++..+.||.|+|..|.|.
T Consensus 39 dVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 39 AVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred EEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 57788 6688 99999999987 78999999 9999999999999999875
No 152
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.23 E-value=1.8e-06 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=32.7
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
+|++||+|.+.++|.+|++ +++..++|++|+|..|
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 7999999999999999999 9999999999998753
No 153
>KOG0110|consensus
Probab=98.20 E-value=1.4e-06 Score=80.04 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=64.5
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhh-hhhhhhhhhhhhhhhhhhhhhHHHHHhhhhccccc
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQV-KKKIETKETASFSRMAENMEDRFNQACDYLPSLVK 91 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~ 91 (300)
|.|||||+|.+++++++|++ |+|+.|+|+.|.|+.+..+.... .+.....+. .. ...|++++.
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~------~t---------KIlVRNipF 623 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK------GT---------KILVRNIPF 623 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccc------cc---------eeeeeccch
Confidence 56999999999999999999 89999999999999987332211 111111100 01 127999999
Q ss_pred CCChHHHHHHHHhhcccccccCC
Q psy633 92 KLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 92 ~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..+-.+..++|..|+|+-....+
T Consensus 624 eAt~rEVr~LF~aFGqlksvRlP 646 (725)
T KOG0110|consen 624 EATKREVRKLFTAFGQLKSVRLP 646 (725)
T ss_pred HHHHHHHHHHHhcccceeeeccc
Confidence 99999999999999998765543
No 154
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.20 E-value=2.2e-06 Score=80.07 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=47.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
.+.|++|+.||+++|||||+|.+.+++..|++ +++..|.|+.|.|..|...
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 46789999999999999999999999999998 9999999999999998654
No 155
>KOG4208|consensus
Probab=98.19 E-value=1.6e-06 Score=68.24 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=42.8
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+++-+.+.||.|||||||+|++++.|.=|.+ ||.-.+.|+.+.|..--|
T Consensus 80 ~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 80 FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 4556899999999999999999999998888 999999999988876543
No 156
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.16 E-value=2.5e-06 Score=78.57 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=46.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+|.++.|+.+|++||||||+|.+.+++.+|+. +++..|.|++|.|..+.
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 57899999999999999999999999999998 99999999999999987
No 157
>KOG3878|consensus
Probab=98.16 E-value=5.1e-06 Score=69.75 Aligned_cols=93 Identities=20% Similarity=0.364 Sum_probs=83.7
Q ss_pred hhhhhhhhhhHHHHHhhhhcccc---cCCChHHHHHHHHhhcccccccCCCC---CCCccchhhhHHHHHHHHcCCCCHH
Q psy633 68 FSRMAENMEDRFNQACDYLPSLV---KKLDSSTLLKFYALYKQATVGQCNID---KPSWYNMEAKSKYNAWNSLGQMAKS 141 (300)
Q Consensus 68 ~~~~~~~l~~~F~~a~~~v~~~~---~~~~~~~~~~~~~~~k~~~~g~~~~~---~p~~~~~~~~~k~~aw~~~~~~~~~ 141 (300)
.+.|+.+|++.+..|..|.+... ..++.++.++|.++.||+..|+.+++ .-|+++..+......|..++.|+.+
T Consensus 25 ~~~wGf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre 104 (469)
T KOG3878|consen 25 AEKWGFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISRE 104 (469)
T ss_pred HHHhCCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHH
Confidence 35788999999999999998765 46899999999999999999999975 3489999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCch
Q psy633 142 EAMSKYIALLNEVDAGWED 160 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~ 160 (300)
+||.+++.+++...+.+.+
T Consensus 105 ~AM~~FV~Lldr~C~~F~~ 123 (469)
T KOG3878|consen 105 QAMEGFVDLLDRMCSAFRP 123 (469)
T ss_pred HHHHHHHHHHHhcchhhhh
Confidence 9999999999999887655
No 158
>KOG0131|consensus
Probab=98.16 E-value=1.3e-06 Score=67.21 Aligned_cols=51 Identities=25% Similarity=0.473 Sum_probs=47.2
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+||+|+.||.++|||||.|.+.++..+|+. ++++.++.|+|.|..+..+..
T Consensus 128 ~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 128 KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 588999999999999999999999999999 999999999999999876544
No 159
>KOG0127|consensus
Probab=98.13 E-value=2.5e-06 Score=76.19 Aligned_cols=51 Identities=20% Similarity=0.426 Sum_probs=45.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++-+.++.+ |||||+|....++..|++ ++++.|+||+|-|++|.+++
T Consensus 146 Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 146 EIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 6788877765555 999999999999999999 99999999999999999875
No 160
>smart00362 RRM_2 RNA recognition motif.
Probab=98.11 E-value=7e-06 Score=54.29 Aligned_cols=44 Identities=32% Similarity=0.573 Sum_probs=37.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 47 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~ 47 (300)
++.++.++ +.++|+|||+|.+.+++.+|++ +++..++|+++.|+
T Consensus 28 ~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 28 SVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred EEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 35566665 8899999999999999999999 88899999988763
No 161
>KOG0147|consensus
Probab=98.10 E-value=2.8e-06 Score=75.98 Aligned_cols=52 Identities=35% Similarity=0.535 Sum_probs=46.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.|.+++|.+||++||||||+|.+.+++.+|++ +|+.+|-||.|+|..-+.+.
T Consensus 307 ~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 307 NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 36788999999999999999999999999988 99999999999998766543
No 162
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.08 E-value=5.8e-06 Score=70.37 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=68.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC----Cchhhhhhhhhhhhhhhhhhhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS----HNSQVKKKIETKETASFSRMAENME 76 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (300)
.+.++.|+.||++||||||+|.+++++..|+. +++..+.|+++.|..+.+ +...... .......... ...-.
T Consensus 144 ~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 220 (306)
T COG0724 144 RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-LDASFAKKLS--RGKAL 220 (306)
T ss_pred EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-cchhhhcccc--ccccc
Confidence 57889999999999999999999999999999 889999999999999653 1111100 0000000000 00001
Q ss_pred hHHHHHhhhhcccccCCChHHHHHHHHhhcccc
Q psy633 77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
........++.++........+...+..++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV 253 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccce
Confidence 112223335666667777788888887777663
No 163
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=65.69 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=41.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
+|+|++|. +++|||||+|.++++++.|+.++|..|.+++|.|.++.
T Consensus 34 ~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 34 HVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred EEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 57888884 55689999999999999999999999999999998865
No 164
>KOG0705|consensus
Probab=97.89 E-value=2.2e-05 Score=70.88 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=58.8
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~ 263 (300)
.-+.+|.|+||.|+.-+...+.+||+- +|+|+..+|..|+|+|.||-..|..+|+.+||. +|+.
T Consensus 656 ~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sqec~d~llq-~gcp 719 (749)
T KOG0705|consen 656 CGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQECIDVLLQ-YGCP 719 (749)
T ss_pred ccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcccHHHHHHHHH-cCCC
Confidence 346678999999999888889999997 999999999999999999999999999999999 8874
No 165
>KOG0521|consensus
Probab=97.89 E-value=7e-06 Score=78.99 Aligned_cols=72 Identities=33% Similarity=0.330 Sum_probs=65.0
Q ss_pred CCCcccc--CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 227 DFNINQL--DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 227 ~~~~~~~--d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
++.+|.. -..|.|+||.|+..|..-++++|++ .|+++|..|..|+||||.+...|+...+.+|+++||+.++
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a 717 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA 717 (785)
T ss_pred hhhhccchhhhcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc
Confidence 4555543 3458999999999999999999999 9999999999999999999999999999999999999875
No 166
>KOG0818|consensus
Probab=97.89 E-value=2.7e-05 Score=69.05 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=59.1
Q ss_pred ccCcCCch------HHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 232 QLDENGLN------CLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 232 ~~d~~g~t------~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.+|.+|.| -||..+..|+.+.+--||. .||++|..+ ..|.||||.|++.|+..-+++|+-+|||+..
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a 195 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA 195 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC
Confidence 35555544 5888999999999999999 999999988 6799999999999999999999999999874
No 167
>KOG0511|consensus
Probab=97.84 E-value=9.4e-05 Score=63.68 Aligned_cols=58 Identities=31% Similarity=0.438 Sum_probs=55.3
Q ss_pred chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.--|..||+.|..+.|++|++ .|.+||+.|.....||.+|+.+||..+|++|+++||-
T Consensus 37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 446889999999999999999 9999999999999999999999999999999999984
No 168
>KOG0147|consensus
Probab=97.82 E-value=2.3e-05 Score=70.22 Aligned_cols=106 Identities=16% Similarity=0.279 Sum_probs=79.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
+|+++.|+.++++||.|||+|.|.+.+..||.+.|+.+-|-+|.|.....-... .+... +.++ +.....+|..
T Consensus 208 dVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr--~a~~s---~a~~--~k~~~~p~~r 280 (549)
T KOG0147|consen 208 DVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNR--AANAS---PALQ--GKGFTGPMRR 280 (549)
T ss_pred eeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHH--HHhcc---cccc--ccccccchhh
Confidence 689999999999999999999999999999999999999999999775422111 00000 0011 0122223333
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 116 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~ 116 (300)
.+|+++-..++++++...|..|+.+.......+
T Consensus 281 --l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d 313 (549)
T KOG0147|consen 281 --LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD 313 (549)
T ss_pred --hhhcccccCchHHHHhhhccCcccceeeeeccc
Confidence 589999999999999999999998877665554
No 169
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.79 E-value=6.3e-05 Score=49.88 Aligned_cols=45 Identities=33% Similarity=0.620 Sum_probs=38.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 47 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~ 47 (300)
.+.++.++.+ +++|+|||+|.+.+++..|++ +++..++|+.+.|.
T Consensus 28 ~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 28 SVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred EEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 3566677655 789999999999999999999 88888999998875
No 170
>KOG0506|consensus
Probab=97.79 E-value=1.8e-05 Score=69.79 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=57.0
Q ss_pred cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCCC
Q psy633 235 ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS-GAHSS 298 (300)
Q Consensus 235 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~ 298 (300)
..+..++++|+..|.+..++-+.- .|.|++.+|.+.+|+||+|+..||.+++++|++. +.+++
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~ 567 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD 567 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHHHcCCCC
Confidence 456779999999999999988888 8999999999999999999999999999999984 66665
No 171
>KOG0144|consensus
Probab=97.77 E-value=3e-05 Score=67.53 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=46.9
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC--ccceecCCCCCchhhh
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG--SRLSIQPSDSHNSQVK 57 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g--~~~~v~~a~~~~~~~~ 57 (300)
.+|.|++|. .|.|||++||+|.+.|-+..||+ +|+ ++++| .++-|+.|+++.....
T Consensus 152 ed~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 152 EDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred chhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 368899995 69999999999999999999999 876 67888 5799999987765433
No 172
>KOG4212|consensus
Probab=97.76 E-value=2.8e-05 Score=67.83 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=42.7
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
|++.+| .+|++||.+.|+|+++|.+++|++ ++.+.++||++.|+.-
T Consensus 75 veLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 75 VELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred eeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 678889 689999999999999999999999 9999999999999764
No 173
>KOG0121|consensus
Probab=97.75 E-value=4.4e-05 Score=55.50 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=42.3
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
.+-.|+.+..+-|||||+|-+.+++..|+. +++..++.|+|.+.+-
T Consensus 67 iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 67 IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 344799999999999999999999999999 9999999999999774
No 174
>KOG0130|consensus
Probab=97.72 E-value=2.1e-05 Score=57.59 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=47.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.+.+-.|+.||..|||+.|+|++.+.+++|+. +|+..|-|..|.|.++..+.
T Consensus 101 NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 101 NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 35677899999999999999999999999999 99999999999999986543
No 175
>KOG0107|consensus
Probab=97.72 E-value=2.4e-05 Score=60.05 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=36.0
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
.+-||+||+|+++.+|++|+. +++..|+|..|.|..+.-+
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 477999999999999999999 9999999999888877644
No 176
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.67 E-value=9.2e-05 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 271 GDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
|.||||+|+..++.+++++|++.|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5666777766666777776666666554
No 177
>KOG0109|consensus
Probab=97.61 E-value=5.4e-05 Score=62.72 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=61.4
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccCC
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKL 93 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~~ 93 (300)
|.||||..++...+..||. +++-+|+|..|.|..++.|. + .+.++ +|.++...+
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-----k-~stkl-------------------~vgNis~tc 90 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-----K-ASTKL-------------------HVGNISPTC 90 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEeccccC-----C-Ccccc-------------------ccCCCCccc
Confidence 4499999999999999999 99999999999999887661 1 22233 899999999
Q ss_pred ChHHHHHHHHhhccccccc
Q psy633 94 DSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 94 ~~~~~~~~~~~~k~~~~g~ 112 (300)
.++++...|..|+.+...+
T Consensus 91 tn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 91 TNQELRAKFEKYGPVIECD 109 (346)
T ss_pred cCHHHhhhhcccCCceeee
Confidence 9999999999999876443
No 178
>KOG0117|consensus
Probab=97.61 E-value=0.00011 Score=64.44 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=69.4
Q ss_pred eEEEeeeC-CCCCccCeEEEEecChHHHHHHHh--cCC-ceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhh
Q psy633 2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFS--TDS-HVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMED 77 (300)
Q Consensus 2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~--~~~-~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (300)
+|.|..++ ++.++||||||+|.+...|.-|-. +++ ..+.|..+.|.+|.|+...-....++.+.
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKv------------ 261 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKV------------ 261 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheee------------
Confidence 45555444 477999999999999999988877 343 44889999999999886533223332221
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccc
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
.||+++..+.++|.+.++|..|+.+.-.
T Consensus 262 ------LYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 262 ------LYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred ------eeeeccchhhhHHHHHHHHHhccceEEe
Confidence 2999999999999999999999776533
No 179
>KOG0145|consensus
Probab=97.49 E-value=0.00012 Score=59.66 Aligned_cols=47 Identities=21% Similarity=0.553 Sum_probs=41.9
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCC
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSD 50 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~ 50 (300)
+|..|..||.|||.|||.|+..++++.||. ++|+.=.| .+|.|+.|.
T Consensus 158 RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 158 RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 677899999999999999999999999999 99988766 478888875
No 180
>KOG0522|consensus
Probab=97.48 E-value=0.00026 Score=63.61 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=50.1
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHh
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE 258 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 258 (300)
+..|..|.||||.|+.-++.....+|.. .|+++..++..||+|||-|+..|+.+++..+|.
T Consensus 49 d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 49 DRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR 109 (560)
T ss_pred ccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence 5567788999999887555445555555 599999999999999999999999999888876
No 181
>KOG0415|consensus
Probab=97.37 E-value=0.00017 Score=61.48 Aligned_cols=51 Identities=27% Similarity=0.549 Sum_probs=47.5
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
.+|.|++|+.||-|--|+||+|++.+++++|.= |+...|+.|.|.|..+++
T Consensus 267 ~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 267 VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred eeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 478999999999999999999999999999975 999999999999998764
No 182
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.32 E-value=0.00041 Score=48.93 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.7
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceec
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE 40 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~ 40 (300)
+.++.|..++.+.|||||.|.+++.+.+-.+ .++..+.
T Consensus 33 ~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 33 FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4689999999999999999999999999887 7776665
No 183
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.31 E-value=0.00044 Score=36.23 Aligned_cols=29 Identities=45% Similarity=0.757 Sum_probs=25.6
Q ss_pred CCchHHHHHHHCCCHHHHHHHHhhcCCCcc
Q psy633 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVN 265 (300)
Q Consensus 236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~ 265 (300)
.|.||||+|+..++.+++++|+. .|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~-~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLD-KGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence 37899999999999999999999 887664
No 184
>KOG2384|consensus
Probab=97.31 E-value=0.00063 Score=53.27 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=60.3
Q ss_pred CcccCcCcchHHHHHHhCCHHHHHHHHhhcCC-CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKD-FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
.+..|..|+|+++.|+..+..+++.+|+. .| +.+...|..|.+++.+|-..|+.+++..|.+ .-.+-...++.-.+
T Consensus 5 in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe-~~~ets~p~nss~~ 81 (223)
T KOG2384|consen 5 INARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE-NDRETSHPMNSSRD 81 (223)
T ss_pred ccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHH-HhccCCCcccCCCC
Confidence 46678899999998877666666666666 57 8999999999999999999999999999998 65555444443333
No 185
>KOG0124|consensus
Probab=97.30 E-value=0.00024 Score=60.74 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=46.6
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+.|.+.+++.++.+|||||++|.+..+...|+. ||-..++|.-++|.++.
T Consensus 238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 368999999999999999999999999999999 99999999999998875
No 186
>KOG4209|consensus
Probab=97.29 E-value=0.0003 Score=58.17 Aligned_cols=48 Identities=27% Similarity=0.485 Sum_probs=44.5
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
+.|+.|+.+|.+|||+||+|.+.+.+..++.+++..|-|+.++|....
T Consensus 131 ~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 131 VTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 578999999999999999999999999999999999999999987654
No 187
>KOG2505|consensus
Probab=97.27 E-value=0.00057 Score=60.99 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCHHHHHHHHhhcCCCCccc------cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633 213 GKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 213 ~~~~~v~~ll~~~~~~~~~~------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~ 279 (300)
+..+..++.|.. ++.+.|. .+....|+||+|+..|...+|.+||+ .|+|+..+|..|+||.+++.
T Consensus 401 ~~~p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 401 KPEPDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cCchhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence 445556666666 5665543 35557899999999999999999999 99999999999999999987
No 188
>KOG4211|consensus
Probab=97.22 E-value=0.00051 Score=61.09 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=69.5
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhh-hhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV-KKKIETKETASFSRMAENMEDRFNQAC 83 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~F~~a~ 83 (300)
++.-+.+||..|=+||+|.++|++++|++.+...+..|-|+|-.+.+.+... .++..-..... .-+
T Consensus 39 ~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~-------------d~v 105 (510)
T KOG4211|consen 39 LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSAN-------------DGV 105 (510)
T ss_pred EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCC-------------Cce
Confidence 5566778999999999999999999999999999999999999887654321 11111000000 001
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
..+++|+.+++++++.++|+-...++.|
T Consensus 106 VRLRGLPfscte~dI~~FFaGL~Iv~~g 133 (510)
T KOG4211|consen 106 VRLRGLPFSCTEEDIVEFFAGLEIVPDG 133 (510)
T ss_pred EEecCCCccCcHHHHHHHhcCCcccccc
Confidence 2567899999999999999987776663
No 189
>KOG0148|consensus
Probab=97.16 E-value=0.00063 Score=56.01 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=38.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|+|.+| +||+||.|++.|+|.+||. +|+.+|+|..|++.+.+..
T Consensus 193 EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 193 EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 4556555 5899999999999999998 9999999999999887644
No 190
>KOG0110|consensus
Probab=96.80 E-value=0.00091 Score=62.08 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=38.9
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
..|++|+||||-|.++++|++||. .|...|+-..|.|..|.+
T Consensus 4 ~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~~ 46 (725)
T KOG0110|consen 4 KDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKS 46 (725)
T ss_pred CCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehhh
Confidence 369999999999999999999999 899999999999988764
No 191
>KOG4206|consensus
Probab=96.36 E-value=0.01 Score=47.91 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=41.5
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.|.+.||=|||.|.+.+.+..|+. ++|.-+-|+++++..|..+.+
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSD 92 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccc
Confidence 589999999999999999999998 999999999999999987654
No 192
>KOG4661|consensus
Probab=96.25 E-value=0.0049 Score=56.03 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=44.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
-++|+++-.|---|.|||||+.+.+++.++|+ ++..+|.||.|.|..++
T Consensus 434 GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 434 GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35788888888889999999999999999999 99999999999998886
No 193
>KOG0114|consensus
Probab=95.92 E-value=0.017 Score=40.68 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.|...||-+||.|++-.+|.+|+. ++|..++++.+.|-..++-.
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 456678999999999999999999 99999999999998877543
No 194
>KOG0105|consensus
Probab=95.26 E-value=0.067 Score=41.88 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=65.4
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh--h-----------------hhhhhhhhhhhhhh
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK--K-----------------KIETKETASFSRMA 72 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~--~-----------------~~~~~~~~~~~~~~ 72 (300)
..-+|+||+|+++.+++.||. .++-.++|..++|..+..-..... . ..++.. .+
T Consensus 43 g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrS--e~---- 116 (241)
T KOG0105|consen 43 GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRS--EY---- 116 (241)
T ss_pred CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCccccc--ce----
Confidence 345699999999999999998 899999999999988764321100 0 000000 00
Q ss_pred hhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhh
Q psy633 73 ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEA 125 (300)
Q Consensus 73 ~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~ 125 (300)
...|.+|+.+-+=.+|.+.+..-+.+-..++..+..|+.++..
T Consensus 117 ----------RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r 159 (241)
T KOG0105|consen 117 ----------RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLR 159 (241)
T ss_pred ----------eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeee
Confidence 0146788888888888888877776666665555566655543
No 195
>KOG2505|consensus
Probab=94.98 E-value=0.04 Score=49.67 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCccc------cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 250 LKVVQHLIEKCGADVNV------TDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
...+++|.+ .+++.|. .+..-.|+||+|+..|..++|.+||+.|+|+.+
T Consensus 404 p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~ 458 (591)
T KOG2505|consen 404 PDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST 458 (591)
T ss_pred hhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh
Confidence 567888888 7776643 344567899999999999999999999999865
No 196
>KOG0109|consensus
Probab=94.95 E-value=0.018 Score=48.14 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=38.6
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK 57 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~ 57 (300)
=|+|+||.|+-.+++..|+. +++.+++|+++.|..+++|-....
T Consensus 111 vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 111 VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 36799999999999999998 999999999999999987755433
No 197
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.83 E-value=0.17 Score=41.16 Aligned_cols=91 Identities=24% Similarity=0.310 Sum_probs=63.5
Q ss_pred chHHHHHHhCCHHHHHHHHhhcCCCCccccCcC----CchHHHHHH--HCCCHHHHHHHHhhcC-CCcccc---CCCCCc
Q psy633 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN----GLNCLHWAC--DRGHLKVVQHLIEKCG-ADVNVT---DSDGDY 273 (300)
Q Consensus 204 ~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~----g~t~Lh~A~--~~g~~~~v~~Ll~~~g-~~~~~~---d~~g~T 273 (300)
.+++-.+.....+.+..+|.. .......|-- +.--+-++. ..-...+.+++|. .| +++|.+ -+.|.|
T Consensus 180 ~~Am~~si~~~K~dva~~lls--~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~-~Glv~vN~~F~~~NSGdt 256 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLS--KFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFIN-RGLVDVNKKFQKVNSGDT 256 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHh--hcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHh-ccccccchhhhccCCcch
Confidence 456667777777777777776 3343333321 222333332 3335778888888 55 677764 578999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 274 GLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 274 pL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
-|.-|..++..+++.+||++||-.
T Consensus 257 MLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 257 MLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred HHHhHHhcCcHHHHHHHHHcCccc
Confidence 999999999999999999999943
No 198
>KOG0106|consensus
Probab=94.29 E-value=0.023 Score=46.17 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=56.2
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh-------hh-hhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK-------KK-IETKETASFSRMAENMEDRFNQACD 84 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~F~~a~~ 84 (300)
-.|||||.|.+..++..|+. +++..+.|..+.|..+........ +. ...... +.. .....
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~--------p~~---s~~r~ 102 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRP--------PSR---THFRL 102 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCC--------ccc---cccee
Confidence 35899999999999999998 999999998877777764321110 00 110000 000 00011
Q ss_pred hhcccccCCChHHHHHHHHhhccccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
.+..+...+...++.+.|..+++++.-.
T Consensus 103 ~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 103 IVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred eeccchhhhhHHHHhhhhcccCCCchhh
Confidence 3445555677788999999999985543
No 199
>KOG1995|consensus
Probab=94.25 E-value=0.033 Score=48.04 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=46.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.+.|-+|++|+++||=|.|+|+|.-.++.|+. .++..+.|.+|+|..|..+.
T Consensus 103 ki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 103 KIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred chhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 35678999999999999999999999999999 89999999999998887554
No 200
>KOG3609|consensus
Probab=93.87 E-value=0.24 Score=47.78 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=41.2
Q ss_pred cchHHHHHHhCCHHHHHHHHhhcCCCCc----------cccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc
Q psy633 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNI----------NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 267 (300)
Q Consensus 203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~----------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~ 267 (300)
|.-+|++.+.+-.+. +++++. +.... ...-..+.|||++||..++.+|+++||. .|+.+...
T Consensus 89 gdALL~aI~~~~v~~-VE~ll~-~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~-kg~~i~~P 160 (822)
T KOG3609|consen 89 GDALLLAIAVGSVPL-VELLLV-HFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT-RGHCIPIP 160 (822)
T ss_pred chHHHHHHHHHHHHH-HHHHHh-cccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH-cCCCCCCC
Confidence 555666655555554 444444 22211 1223457899999999999999999999 88876553
No 201
>KOG1457|consensus
Probab=93.39 E-value=0.14 Score=41.35 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=33.8
Q ss_pred eCCCCCccCeEEEEecChHHHHHHHh-cCCceec---CccceecCCCCC
Q psy633 8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE---GSRLSIQPSDSH 52 (300)
Q Consensus 8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~~~~v~~a~~~ 52 (300)
++...-.+-+|||+|.+...+.+|++ ++|..++ +..+++..|+..
T Consensus 70 sk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSN 118 (284)
T KOG1457|consen 70 SKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSN 118 (284)
T ss_pred cCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcC
Confidence 33334455799999999999999998 8988876 456666666543
No 202
>KOG0146|consensus
Probab=93.22 E-value=0.17 Score=42.00 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=37.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC--ccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG--SRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g--~~~~v~~a~ 50 (300)
+|.|.+.+ .|.|||.+||.|.+.-+++.||. +++ .++-| ..+.|+.|+
T Consensus 48 e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 48 ECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred eeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 56666664 68999999999999999999998 765 45655 456777765
No 203
>KOG0153|consensus
Probab=92.59 E-value=0.1 Score=44.93 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=34.0
Q ss_pred ccCeEEEEecChHHHHHHHh--cCCceecCccceecCCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS--TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~--~~~~~~~g~~~~v~~a~~ 51 (300)
.+|.+||+|.+.++++.|.+ .+...|+|++|.|.+..+
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45799999999999999998 677889999999998877
No 204
>KOG4210|consensus
Probab=92.34 E-value=0.061 Score=46.15 Aligned_cols=53 Identities=19% Similarity=0.411 Sum_probs=45.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.++++.++.|+.++|||||.|........++....+.+.|+++.+....++..
T Consensus 214 ~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 214 SVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred eeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCcc
Confidence 46788999999999999999999999888886667889999999988877643
No 205
>KOG1548|consensus
Probab=92.11 E-value=0.2 Score=43.19 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=42.0
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
|++.+|.. |+.||=|.+.|--.++|.-|++ +++..+.|+.|+|.+|+
T Consensus 172 ~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 172 VKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred EEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 55666643 8899999999999999999999 89999999999999987
No 206
>KOG1548|consensus
Probab=91.89 E-value=0.32 Score=41.91 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=40.3
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.++.|+ .+.|-.-|+|.+.++|+.+|+ |+|..++||+|.......+.
T Consensus 306 vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 306 VVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred EEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 466775 588999999999999999999 99999999999987766543
No 207
>KOG4211|consensus
Probab=91.50 E-value=0.18 Score=45.50 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=40.3
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
+.+++|+ .+++-|=+||.|++.+.+++|+..+...|+.|-|+|-++.
T Consensus 134 i~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 134 ILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred eeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 3456675 5779999999999999999999988899999999987765
No 208
>KOG4454|consensus
Probab=91.44 E-value=0.15 Score=41.08 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=37.0
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
|.|+.++ .++.| |+||.|.++-.+.-|++ ++|..+.|+.+.++.-
T Consensus 39 v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 39 VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4455554 46677 99999999999999999 8999999998887653
No 209
>KOG2314|consensus
Probab=91.44 E-value=0.24 Score=45.45 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=32.0
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG 41 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g 41 (300)
..++.|.++| ++||.|++|.+..+|+.|++ ++|+.|+-
T Consensus 94 ~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 94 MYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4567786666 99999999999999999998 78777764
No 210
>KOG0120|consensus
Probab=91.28 E-value=0.14 Score=46.98 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=45.5
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
.++.|..||-++||+|.+|.++-....|+. ++|..+.++++.|..|.+..
T Consensus 320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 578899999999999999999999999999 99999999999998887543
No 211
>KOG4210|consensus
Probab=91.25 E-value=0.26 Score=42.32 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=68.9
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHhcCC-ceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDS-HVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQAC 83 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~-~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~ 83 (300)
......+..++||++|.|...+.+..++.+.+ ..+.++.+.......+......+..+... +....
T Consensus 120 ~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~-------------~~s~~ 186 (285)
T KOG4210|consen 120 SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSS-------------GPSDT 186 (285)
T ss_pred hhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhccccc-------------Ccccc
Confidence 33445678999999999999999999999666 57777777776666554211111111100 00011
Q ss_pred h-hhcccccCCChHHHHHHHHhhcccccccCCCCCC
Q psy633 84 D-YLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP 118 (300)
Q Consensus 84 ~-~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p 118 (300)
. ++.++....+.+++...|...+.++...+....+
T Consensus 187 ~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~ 222 (285)
T KOG4210|consen 187 IFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE 222 (285)
T ss_pred ceeecccccccchHHHhhhccCcCcceeeccCCCCC
Confidence 1 4888899999999998998888888887766544
No 212
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=90.82 E-value=0.44 Score=32.47 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=27.9
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+.|-|.|.|.+++.|.+|.+ |++..+-|++|.|....
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 35789999999999999999 99999999999998763
No 213
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=90.52 E-value=0.66 Score=31.15 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=10.6
Q ss_pred HHHHHHHCCCHHHHHHHHh
Q psy633 240 CLHWACDRGHLKVVQHLIE 258 (300)
Q Consensus 240 ~Lh~A~~~g~~~~v~~Ll~ 258 (300)
+|..|...-+.+++++|++
T Consensus 35 ~l~~AI~~H~n~i~~~l~~ 53 (76)
T PF11929_consen 35 CLEYAIKSHNNEIADWLIE 53 (76)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555
No 214
>KOG0116|consensus
Probab=90.51 E-value=0.21 Score=45.08 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=34.1
Q ss_pred CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~ 51 (300)
+++.+||||+|.+.++++.|++.+...|+|+++.|..-.+
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4444999999999999999999888999999999876443
No 215
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.65 E-value=0.38 Score=36.52 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.1
Q ss_pred EEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633 18 GFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~ 51 (300)
=+|||.+.+.|-+|+.++|..++|+.+.|+.-.|
T Consensus 73 mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 73 MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp EEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred EEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 4899999999999999999999999999876443
No 216
>KOG0106|consensus
Probab=89.21 E-value=0.2 Score=40.83 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=32.9
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
.++|+||.|.+.+++.+|+. +++..+.|+.|.+-.+
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 58999999999999999999 9999999999999443
No 217
>KOG1190|consensus
Probab=88.18 E-value=1.2 Score=39.51 Aligned_cols=101 Identities=14% Similarity=0.269 Sum_probs=64.0
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhh----------hhhhhhhhhhhhh
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKK----------KIETKETASFSRM 71 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~----------~~~~~~~~~~~~~ 71 (300)
|.|.+.+. -=+.|.|.|..-++-|++ ++++.|-|++|+|..++-...+.++ .....-+.+|.+.
T Consensus 328 Vkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkp 402 (492)
T KOG1190|consen 328 VKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKP 402 (492)
T ss_pred EEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCc
Confidence 45555543 358999999999999999 9999999999999887633222111 1111111222211
Q ss_pred h-hhhhhHH-HHHhhhhcccccCCChHHHHHHHHhhccc
Q psy633 72 A-ENMEDRF-NQACDYLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 72 ~-~~l~~~F-~~a~~~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
+ +...--| ..|..+..+++.++++|++..+|...+-.
T Consensus 403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~ 441 (492)
T KOG1190|consen 403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQ 441 (492)
T ss_pred ccccccccCCchhheeeccCCcccchhHHHHhhhcCCce
Confidence 1 1111122 23455778889999999999999876533
No 218
>KOG1365|consensus
Probab=86.77 E-value=1.6 Score=38.37 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhccc
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSL 89 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~ 89 (300)
..|+.-|-+.|.|.|+|.-+-|++.+.|.+.+|.|+|-.+.+..--.-.--...+...|-. .=.+....++++
T Consensus 97 ~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~fls-------k~~qvivRmRGL 169 (508)
T KOG1365|consen 97 AQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLS-------KENQVIVRMRGL 169 (508)
T ss_pred hhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCC-------cccceEEEecCC
Confidence 4578889999999999999999998899999999999888754311000000000000000 000112256789
Q ss_pred ccCCChHHHHHHHHhhcccc
Q psy633 90 VKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 90 ~~~~~~~~~~~~~~~~k~~~ 109 (300)
+.+..+.+.+++|+..-.++
T Consensus 170 Pfdat~~dVv~FF~~~cpv~ 189 (508)
T KOG1365|consen 170 PFDATALDVVEFFGPPCPVT 189 (508)
T ss_pred CCCcchHHHHHhcCCCCccc
Confidence 99999999999997443333
No 219
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=86.60 E-value=1.6 Score=34.54 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=40.6
Q ss_pred hHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292 (300)
Q Consensus 239 t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 292 (300)
.-|.+|+..|....+.-.|+ +|.+++. +.|..|+..+|..|+.+++.
T Consensus 145 ~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 145 QHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 35678999999999988888 8888764 79999999999999998875
No 220
>KOG0132|consensus
Probab=86.33 E-value=0.68 Score=44.29 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=37.4
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
-+||.|||.+....+|.+|+. |..+.+.++.|+|.+|..+.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 479999999999999999998 89999999999999997553
No 221
>KOG4849|consensus
Probab=86.14 E-value=0.7 Score=39.92 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=39.2
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
++...++..|+||||+.|...++.++.+.++ +...+|.|..-.|-..
T Consensus 112 mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 112 MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 3445678899999999999999999999999 8889999976555443
No 222
>KOG1365|consensus
Probab=85.68 E-value=0.42 Score=41.80 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=65.1
Q ss_pred eCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhh--hhhhhhhhhh-hhhhhHH-----
Q psy633 8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET--KETASFSRMA-ENMEDRF----- 79 (300)
Q Consensus 8 d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~F----- 79 (300)
-+..||.-|=+||.|..+++++.|+..+...|+-|-|++-+++..+.+..-+... ..+...+... ..+...+
T Consensus 199 ~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~ 278 (508)
T KOG1365|consen 199 TRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTR 278 (508)
T ss_pred ECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCC
Confidence 3457999999999999999999999999999999999988776544322111110 1111100000 0000001
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhcc
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
.+-|..+++++.+..-++.+++++.|-.
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~ 306 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFAT 306 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhh
Confidence 1445577889989999999999998853
No 223
>KOG0128|consensus
Probab=85.40 E-value=0.6 Score=45.06 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=49.2
Q ss_pred eCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhc
Q psy633 8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLP 87 (300)
Q Consensus 8 d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~ 87 (300)
-..+++.||+|||.|.+++++.+|+.++...+-| +...+++
T Consensus 702 h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------------------------------------K~~v~i~ 742 (881)
T KOG0128|consen 702 HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------------------------------------KISVAIS 742 (881)
T ss_pred HhhccccccceeeEeecCCchhhhhhhhhhhhhh---------------------------------------hhhhhee
Confidence 3468999999999999999999999855443333 1112788
Q ss_pred ccccCCChHHHHHHHHhhcccccc
Q psy633 88 SLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
+.++..+.+.+..++..++.++.-
T Consensus 743 g~pf~gt~e~~k~l~~~~gn~~~~ 766 (881)
T KOG0128|consen 743 GPPFQGTKEELKSLASKTGNVTSL 766 (881)
T ss_pred CCCCCCchHHHHhhccccCCcccc
Confidence 888888888888888877776644
No 224
>KOG0533|consensus
Probab=85.34 E-value=1.3 Score=36.97 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=40.6
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
|=+| .+|+|.|-|=|+|...+++.+|++ .++..++|+.+.+....+.
T Consensus 115 vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 115 VHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred eccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 4456 589999999999999999999999 8999999999888776544
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.20 E-value=0.28 Score=33.93 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=43.0
Q ss_pred EEEEecChHHHHHHHhcCCce--ecCccceecCC--CCCc---hhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633 18 GFVTFQNKEAVDKVFSTDSHV--LEGSRLSIQPS--DSHN---SQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV 90 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~~~~~~--~~g~~~~v~~a--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~ 90 (300)
|.|||.+++.|++.+++..|. +++..+.|... .-.. -+..-.++++.. -+.+++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtV-------------------lvsgip 61 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTV-------------------LVSGIP 61 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEE-------------------EEeCCC
Confidence 579999999999999865544 56666555332 1111 011111222222 577888
Q ss_pred cCCChHHHHHHHHhh
Q psy633 91 KKLDSSTLLKFYALY 105 (300)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (300)
..+++|.+++....+
T Consensus 62 ~~l~ee~l~D~LeIh 76 (88)
T PF07292_consen 62 DVLDEEELRDKLEIH 76 (88)
T ss_pred CCCChhhheeeEEEE
Confidence 889999998877654
No 226
>KOG0120|consensus
Probab=81.10 E-value=2.5 Score=39.02 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=36.2
Q ss_pred eEEEeee---CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 2 NASVMFD---KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d---~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
+|+|+++ ..-.-.-|=-||+|.+.+++++|++ |.|..++||.|.....
T Consensus 438 ~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 438 SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 4556655 1222333456999999999999999 9999999999887654
No 227
>KOG2202|consensus
Probab=80.98 E-value=0.92 Score=37.62 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
.-.-+|=.||.|..++++++|++ +++..++|++|.....
T Consensus 106 ~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 106 GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34457888999999999999999 9999999999887654
No 228
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=80.34 E-value=5.1 Score=29.34 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=53.3
Q ss_pred hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC---CC-------------ccc-------hhhhHHH---
Q psy633 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK---PS-------------WYN-------MEAKSKY--- 129 (300)
Q Consensus 76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~---p~-------------~~~-------~~~~~k~--- 129 (300)
+--|.++...+-.-.-.++.++...|.++.=|+..|+.+... .+ ++. ......|
T Consensus 12 ~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~ 91 (126)
T PF00373_consen 12 HLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEKR 91 (126)
T ss_dssp HHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHHHHH
Confidence 445666666554444488999999999999999999877221 11 111 1233344
Q ss_pred --HHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633 130 --NAWNSLGQMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 130 --~aw~~~~~~~~~~a~~~yi~~v~~l 154 (300)
..|.++.+++..+|+..|++++..+
T Consensus 92 I~~~~~~l~~~s~~~a~~~fl~~~~~~ 118 (126)
T PF00373_consen 92 ILEQHKKLRGMSPEEAKLQFLQICQSL 118 (126)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHHHCTS
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 5688999999999999999999764
No 229
>KOG1996|consensus
Probab=77.11 E-value=2.4 Score=35.93 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.3
Q ss_pred EEEEecChHHHHHHHh-cCCceecCccceecC
Q psy633 18 GFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 48 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~ 48 (300)
-||+|...+.+-+|+. ++|..++||.+....
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 5899999999999988 999999999887554
No 230
>KOG0114|consensus
Probab=76.25 E-value=1.7 Score=30.90 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
|+++++..++.|++.++|+.|+.+-
T Consensus 22 yirNLp~~ITseemydlFGkyg~Ir 46 (124)
T KOG0114|consen 22 YIRNLPFKITSEEMYDLFGKYGTIR 46 (124)
T ss_pred EEecCCccccHHHHHHHhhcccceE
Confidence 8999999999999999999998543
No 231
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.41 E-value=2.7 Score=36.28 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=30.8
Q ss_pred EEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 19 FVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 19 fv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
||||.+.|++.++|. .+|..++||.++....+-+
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCchH
Confidence 999999999999998 8999999999998776644
No 232
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=74.14 E-value=3.8 Score=29.16 Aligned_cols=35 Identities=14% Similarity=0.446 Sum_probs=28.5
Q ss_pred cCeEEEEecChHHHHHHHhcCCceecCc-cceecCC
Q psy633 15 KGFGFVTFQNKEAVDKVFSTDSHVLEGS-RLSIQPS 49 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~~~~~~~~g~-~~~v~~a 49 (300)
..+-.|+|+++.+|.+|+..||..++|. .+-|.++
T Consensus 54 ~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 4578899999999999999999999985 4445554
No 233
>KOG2193|consensus
Probab=72.86 E-value=2.6 Score=37.59 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=53.3
Q ss_pred cCeEEEEecChHHHHHHHh-cCC-ceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccC
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDS-HVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKK 92 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~-~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~ 92 (300)
-||+||.+.++.-+.+|++ +++ ..+.|+++++....++....++ + .+++++..
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk------~-------------------Qirnippq 91 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK------I-------------------QIRNIPPQ 91 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh------h-------------------hHhcCCHH
Confidence 4899999999999999999 555 5588999998777665433222 2 57777777
Q ss_pred CChHHHHHHHHhhccccc
Q psy633 93 LDSSTLLKFYALYKQATV 110 (300)
Q Consensus 93 ~~~~~~~~~~~~~k~~~~ 110 (300)
+--+.+-.|.+.|+.+..
T Consensus 92 l~wevld~Ll~qyg~ve~ 109 (584)
T KOG2193|consen 92 LQWEVLDSLLAQYGTVEN 109 (584)
T ss_pred HHHHHHHHHHhccCCHhH
Confidence 777778888888886653
No 234
>KOG4660|consensus
Probab=70.31 E-value=6 Score=36.62 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=31.8
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL 39 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~ 39 (300)
+.++.|-.+....|||||.|.+++++....+ .+|+.+
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKW 456 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCch
Confidence 4688899999999999999999999999887 666554
No 235
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=69.11 E-value=19 Score=28.92 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred hhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCC---------Cccchh------------hhHHHHHHH
Q psy633 75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP---------SWYNME------------AKSKYNAWN 133 (300)
Q Consensus 75 l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p---------~~~~~~------------~~~k~~aw~ 133 (300)
++--|.++...+-.-...++.++...+.++.-|+..|+...+.. .++... ...-.+.|.
T Consensus 99 ~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~ 178 (207)
T smart00295 99 LNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHK 178 (207)
T ss_pred HHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHH
Confidence 34456666655544344678899999999988888877654210 011111 122245688
Q ss_pred HcCCCCHHHHHHHHHHHHHhh
Q psy633 134 SLGQMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 134 ~~~~~~~~~a~~~yi~~v~~l 154 (300)
++.+++..+|+..||++++.+
T Consensus 179 ~~~~~s~~~a~~~yl~~~~~l 199 (207)
T smart00295 179 ELIGLSPEEAKLKYLELAEKL 199 (207)
T ss_pred HcCCCCHHHHHHHHHHHhccc
Confidence 899999999999999999876
No 236
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=67.71 E-value=16 Score=24.29 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=39.8
Q ss_pred chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293 (300)
Q Consensus 238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 293 (300)
...|..|...|+.++++.+++ .+ .+ ....|..|....+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~-~~-~~------~~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLK-KN-KP------DNDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHH-Hh-cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 357899999999999999998 33 11 14579999999999999999974
No 237
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=66.49 E-value=4.3 Score=25.88 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=25.6
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~ 31 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQFGKIESIKVM 31 (70)
T ss_dssp EEESETTTSSHHHHHHHHHTTSTEEEEEEE
T ss_pred EEcCCCCcCCHHHHHHHHHHhhhccccccc
Confidence 689999999999999999999988654443
No 238
>KOG0129|consensus
Probab=66.04 E-value=7.9 Score=35.57 Aligned_cols=46 Identities=33% Similarity=0.389 Sum_probs=35.0
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecC----ccceecCC
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG----SRLSIQPS 49 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g----~~~~v~~a 49 (300)
-|-+|++-+.+||-|-|+|.+..+..+||....-.|+. ++|+|++.
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 45678889999999999999999999999755544433 35555544
No 239
>KOG4660|consensus
Probab=65.98 E-value=3.3 Score=38.27 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=35.9
Q ss_pred eeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633 7 FDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS 45 (300)
Q Consensus 7 ~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~ 45 (300)
-++.|-..+|-.||.|-|..+|++|++ +++..|.|+.+.
T Consensus 104 ~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 104 EIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred hhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356788899999999999999999999 999999999888
No 240
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.43 E-value=6.4 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.526 Sum_probs=17.7
Q ss_pred CeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 16 GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 16 Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
-|.||+-... .+..++. +++..+.|+++.|..|
T Consensus 41 ~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3888886655 5667777 8999999999998764
No 241
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=60.14 E-value=6.9 Score=24.60 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=9.0
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 478999999886
No 242
>KOG0151|consensus
Probab=56.82 E-value=8.8 Score=36.79 Aligned_cols=43 Identities=12% Similarity=0.317 Sum_probs=37.6
Q ss_pred eCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+-+..+.|-.|||-|.+..++++|++ +++..+.++.+++.++.
T Consensus 212 EeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 212 EEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 34567778899999999999999999 99999999999888874
No 243
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=56.77 E-value=6.7 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=8.8
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~KGfGFI~~~~ 22 (74)
T PRK09937 11 NAKGFGFICPEG 22 (74)
T ss_pred CCCCeEEEeeCC
Confidence 469999996443
No 244
>PRK14998 cold shock-like protein CspD; Provisional
Probab=56.54 E-value=6.5 Score=26.14 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 469999997544
No 245
>KOG4335|consensus
Probab=54.49 E-value=13 Score=34.25 Aligned_cols=83 Identities=13% Similarity=-0.089 Sum_probs=60.4
Q ss_pred HHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH---hcCcH
Q psy633 208 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK---AIEHT 284 (300)
Q Consensus 208 ~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~---~~g~~ 284 (300)
.+++.|..+.+...++. ....+|.....++++|+++...+|.+.+.........+-|..+..|++++.+-. +++..
T Consensus 149 ~a~~lg~vs~l~~v~lk-~k~~p~~l~gq~sp~lll~~~s~h~~~v~~d~~~~~~~rn~~~~~~re~~~~~ee~a~~n~e 227 (558)
T KOG4335|consen 149 NASCLGLVSPLLEVQLK-PKHQPNYLLGQQSPELLLRFTSAHDDDVAMDEPFLQFRRNVFFPKGRELQIIDEEVARLNYE 227 (558)
T ss_pred cccceeccCHHHHHhhc-cccCCchhhccCCchhhhhccCCchhhhhccccchHHhhhhhcccCcchhhhHHHHHHHhHH
Confidence 34566888888888877 667788888889999999999999999887776345566777788888865543 33444
Q ss_pred HHHHHHH
Q psy633 285 DLIEYLV 291 (300)
Q Consensus 285 ~iv~~Ll 291 (300)
+..+.|+
T Consensus 228 eA~~nvl 234 (558)
T KOG4335|consen 228 EAKGNVL 234 (558)
T ss_pred HHHHhHH
Confidence 4444444
No 246
>PRK15464 cold shock-like protein CspH; Provisional
Probab=54.42 E-value=6.7 Score=25.84 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=9.0
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
.-||||||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999997544
No 247
>PRK15463 cold shock-like protein CspF; Provisional
Probab=53.08 E-value=7.5 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=8.8
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
.-||||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 358999997443
No 248
>KOG1456|consensus
Probab=51.69 E-value=27 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.9
Q ss_pred CeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 16 GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 16 Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
|-|.|++.|..++++|+. +++..+-|.++.|+.++.
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 789999999999999999 899889999999988764
No 249
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=51.36 E-value=9.3 Score=24.94 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=9.3
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999997554
No 250
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=50.91 E-value=8.9 Score=25.14 Aligned_cols=12 Identities=58% Similarity=0.985 Sum_probs=8.9
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 368999997444
No 251
>PRK10943 cold shock-like protein CspC; Provisional
Probab=49.85 E-value=9.2 Score=25.06 Aligned_cols=12 Identities=58% Similarity=0.933 Sum_probs=8.9
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999997443
No 252
>KOG0128|consensus
Probab=49.52 E-value=10 Score=37.06 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+++.. ..|+++|-+||.|.++..+.++.. .+...+.-+.+.|..+.|
T Consensus 767 ~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 767 RLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred chhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 34444 368999999999999999999887 677777777777777655
No 253
>PRK09890 cold shock protein CspG; Provisional
Probab=48.18 E-value=9.8 Score=25.02 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=8.8
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK09890 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 358999997443
No 254
>COG1278 CspC Cold shock proteins [Transcription]
Probab=47.72 E-value=8.3 Score=25.12 Aligned_cols=13 Identities=46% Similarity=0.905 Sum_probs=10.1
Q ss_pred CccCeEEEEecCh
Q psy633 13 LSKGFGFVTFQNK 25 (300)
Q Consensus 13 ~~rGfgfv~f~~~ 25 (300)
..||||||+=++-
T Consensus 11 ~~KGfGFI~p~~G 23 (67)
T COG1278 11 ATKGFGFITPEDG 23 (67)
T ss_pred CCCcceEcCCCCC
Confidence 5789999986554
No 255
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=47.23 E-value=10 Score=24.89 Aligned_cols=10 Identities=60% Similarity=1.119 Sum_probs=7.9
Q ss_pred ccCeEEEEec
Q psy633 14 SKGFGFVTFQ 23 (300)
Q Consensus 14 ~rGfgfv~f~ 23 (300)
.||||||+=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T PRK10354 15 DKGFGFITPD 24 (70)
T ss_pred CCCcEEEecC
Confidence 5899999743
No 256
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=44.55 E-value=13 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.6
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 38 fVgnL~~~~te~~L~~~F~~~G~I~~v~i 66 (144)
T PLN03134 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKV 66 (144)
T ss_pred EEeCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 89999999999999999999997765544
No 257
>KOG4307|consensus
Probab=43.36 E-value=9.2 Score=36.58 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
-+++-++-|||.|..+++...|.. ...+.+..|.|+|.....+.
T Consensus 471 P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 471 PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred CcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 478899999999999888888876 78899999999998765443
No 258
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=41.77 E-value=40 Score=21.88 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=22.7
Q ss_pred CeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633 16 GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS 45 (300)
Q Consensus 16 Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~ 45 (300)
|| ||.|.+..+|+++.. .++..+.+..+.
T Consensus 35 Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 35 GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 56 999999999999998 677666654443
No 259
>KOG0146|consensus
Probab=41.69 E-value=22 Score=29.94 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=24.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||+.+...-++|+.+.+|..|+.+...-|
T Consensus 23 fvgml~kqq~e~dvrrlf~pfG~~~e~tv 51 (371)
T KOG0146|consen 23 FVGMLNKQQSEDDVRRLFQPFGNIEECTV 51 (371)
T ss_pred hhhhhcccccHHHHHHHhcccCCcceeEE
Confidence 78888888899999999999998765443
No 260
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=40.88 E-value=22 Score=22.74 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.6
Q ss_pred ccCeEEEEecCh
Q psy633 14 SKGFGFVTFQNK 25 (300)
Q Consensus 14 ~rGfgfv~f~~~ 25 (300)
.||||||+-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 689999987654
No 261
>KOG4212|consensus
Probab=40.76 E-value=47 Score=30.17 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=31.9
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecC
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 48 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~ 48 (300)
.-.|++ |.+|||+.+.|.++-.+..||. ++++-+..++..+..
T Consensus 247 f~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 247 FSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred eeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 345764 6999999999999988888888 666555555554443
No 262
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=40.41 E-value=17 Score=23.22 Aligned_cols=11 Identities=55% Similarity=1.075 Sum_probs=8.6
Q ss_pred ccCeEEEEecC
Q psy633 14 SKGFGFVTFQN 24 (300)
Q Consensus 14 ~rGfgfv~f~~ 24 (300)
.||||||+=.+
T Consensus 11 ~kGfGFI~~~~ 21 (65)
T cd04458 11 EKGFGFITPDD 21 (65)
T ss_pred CCCeEEEecCC
Confidence 48999997554
No 263
>KOG3836|consensus
Probab=39.33 E-value=6.9 Score=36.78 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 244 A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
|+..+-...+-.|++ .++.++..|..+.||+|+++..|..++.+.++..-
T Consensus 403 ~~~~~~ss~v~~lik-~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~ 452 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIK-KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCK 452 (605)
T ss_pred hhhcCCccceeeeec-ccCccchhcccccccccccCCCCCHHHhhhhhhhh
Confidence 455555555666666 77888888888888888888888888888776543
No 264
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=38.38 E-value=93 Score=25.86 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCcccc---CcCCchHHHHHHHCCCHHHHHHHHhhcCCC
Q psy633 215 LDMLVKQLTKLKDFNINQL---DENGLNCLHWACDRGHLKVVQHLIEKCGAD 263 (300)
Q Consensus 215 ~~~v~~ll~~~~~~~~~~~---d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~ 263 (300)
...|.+..++..-+++|.+ -..|.|-|--|...+..+++.+||+ +||-
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA~ 279 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGAI 279 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCcc
Confidence 3444444444244667653 4569999999999999999999999 9984
No 265
>KOG2068|consensus
Probab=38.00 E-value=13 Score=32.22 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=32.5
Q ss_pred EEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 18 GFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
++|||..++++..+|. -++..++|+.++......+-+.
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttkycs 166 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTKYCS 166 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCcchh
Confidence 7999999999999999 8899999999887777766543
No 266
>KOG0129|consensus
Probab=36.95 E-value=57 Score=30.24 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=52.8
Q ss_pred ccC---eEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhH-HHHHhhhhccc
Q psy633 14 SKG---FGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDR-FNQACDYLPSL 89 (300)
Q Consensus 14 ~rG---fgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~a~~~v~~~ 89 (300)
++| |.|..|+++..+...+.- -..+.....++.+.++....--.+ ++..-.=..+-.+.+.. --+-+.||+++
T Consensus 302 pkGs~~YvflvFe~E~sV~~Ll~a--C~~~~~~~yf~vss~~~k~k~VQI-rPW~laDs~fv~d~sq~lDprrTVFVGgv 378 (520)
T KOG0129|consen 302 PKGSYGYVFLVFEDERSVQSLLSA--CSEGEGNYYFKVSSPTIKDKEVQI-RPWVLADSDFVLDHNQPIDPRRTVFVGGL 378 (520)
T ss_pred CCCcccEEEEEecchHHHHHHHHH--HhhcccceEEEEecCcccccceeE-EeeEeccchhhhccCcccCccceEEecCC
Confidence 566 999999999999887751 111333333333332211110000 00000000000000000 01223489999
Q ss_pred ccCCChHHHHHHHH-hhcccccccCCCC
Q psy633 90 VKKLDSSTLLKFYA-LYKQATVGQCNID 116 (300)
Q Consensus 90 ~~~~~~~~~~~~~~-~~k~~~~g~~~~~ 116 (300)
+..+.-+++..++. +|+-+.+--.+++
T Consensus 379 prpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 379 PRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred CCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 99999999999999 8998876655555
No 267
>PLN03120 nucleic acid binding protein; Provisional
Probab=36.48 E-value=23 Score=29.97 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.1
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
.||++++...+++++.++|..|+.+.......
T Consensus 7 VfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~ 38 (260)
T PLN03120 7 VKVSNVSLKATERDIKEFFSFSGDIEYVEMQS 38 (260)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 38999999999999999999999877655433
No 268
>KOG3530|consensus
Probab=35.52 E-value=1.3e+02 Score=28.67 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=50.8
Q ss_pred cCCChHHHHHHHHhhcccccccCCCCC------------CCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhcCC
Q psy633 91 KKLDSSTLLKFYALYKQATVGQCNIDK------------PSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAG 157 (300)
Q Consensus 91 ~~~~~~~~~~~~~~~k~~~~g~~~~~~------------p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~~~ 157 (300)
-.++.+...+|-++-=|...|+++... |........+=.+.|+.++|+++..|+-.|+...+.|..-
T Consensus 120 L~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemY 198 (616)
T KOG3530|consen 120 LYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMY 198 (616)
T ss_pred CCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhc
Confidence 356778888888888888899988753 2222333445577899999999999999999999777543
No 269
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=33.05 E-value=55 Score=20.03 Aligned_cols=19 Identities=11% Similarity=0.510 Sum_probs=16.2
Q ss_pred ccCeEEEEecChHHHHHHH
Q psy633 14 SKGFGFVTFQNKEAVDKVF 32 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~ 32 (300)
.+-+.||.|.+..++++|+
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 4558999999999999884
No 270
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=31.94 E-value=43 Score=24.00 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=12.8
Q ss_pred eEEEEecChHHHHHHHh
Q psy633 17 FGFVTFQNKEAVDKVFS 33 (300)
Q Consensus 17 fgfv~f~~~~~~~~a~~ 33 (300)
-|||-|.++++|++|+.
T Consensus 39 ~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp EEEEEESS---HHHHHH
T ss_pred EEEEEECCcchHHHHHH
Confidence 68999999999999987
No 271
>KOG1456|consensus
Probab=31.83 E-value=44 Score=29.68 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.3
Q ss_pred eEEEEecChHHHHHHHh-cCCceec-C-ccceecCCCCCc
Q psy633 17 FGFVTFQNKEAVDKVFS-TDSHVLE-G-SRLSIQPSDSHN 53 (300)
Q Consensus 17 fgfv~f~~~~~~~~a~~-~~~~~~~-g-~~~~v~~a~~~~ 53 (300)
=+.|+|++.+.|++|-+ +||..|- | -.++|..|+|-+
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 48999999999999998 8987764 3 467777777643
No 272
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.79 E-value=46 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 18 GFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
|||+|++..+++.+.+ ...+ .++.+.+..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCC
Confidence 7999999999999987 2222 23445666654
No 273
>PLN03121 nucleic acid binding protein; Provisional
Probab=30.38 E-value=33 Score=28.61 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=26.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
+|.++....+++++.++|..+|.+.......
T Consensus 9 ~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~ 39 (243)
T PLN03121 9 EVTNLSPKATEKDVYDFFSHCGAIEHVEIIR 39 (243)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCeEEEEEec
Confidence 7999999999999999999999887665443
No 274
>KOG0226|consensus
Probab=30.08 E-value=63 Score=27.16 Aligned_cols=86 Identities=13% Similarity=0.182 Sum_probs=50.2
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQAC 83 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~ 83 (300)
++.| .-+.-++|+|+.|.......++-. .++..+.-++|+...++.=....- .. | =+.+| .
T Consensus 131 ~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl---~e--------w---~~~Df---R 192 (290)
T KOG0226|consen 131 LVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSL---AE--------W---DEDDF---R 192 (290)
T ss_pred hhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCccc---cc--------C---ccccc---e
Confidence 3444 346788999999999988888765 455555555555444432111000 00 0 01111 1
Q ss_pred hhhcccccCCChHHHHHHHHhhccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
.|.+.+...++++.+-..|..|+.-
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf 217 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSF 217 (290)
T ss_pred eecccccccccHHHHHHHHHhccch
Confidence 2555666778888899999888743
No 275
>KOG3836|consensus
Probab=29.08 E-value=13 Score=35.03 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=39.2
Q ss_pred HHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 221 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 221 ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
.+.. .+..++..|..|.+|+|++|..|...+.+.++. +..+++.....|.+
T Consensus 414 ~lik-~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~-~~~~~~~~~~~~~~ 464 (605)
T KOG3836|consen 414 TLIK-KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLN-CKVAISLKSVNGMI 464 (605)
T ss_pred eeec-ccCccchhcccccccccccCCCCCHHHhhhhhh-hhhhhhcccccccc
Confidence 3444 467788889999999999999999999999987 76666555544443
No 276
>KOG1595|consensus
Probab=28.92 E-value=9.1 Score=35.40 Aligned_cols=93 Identities=18% Similarity=0.068 Sum_probs=53.8
Q ss_pred cCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCch-HHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH---HH
Q psy633 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLN-CLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG---LD 276 (300)
Q Consensus 201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t-~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp---L~ 276 (300)
.+.+|++.+|+..|...+...+....-.+++-.-.+|.. +..+-...|..+.+..|+. +++..+.+|..|+-+ ||
T Consensus 56 ~~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~~C~~~g~s~~~~e~~~hL~~-~k~~~~~tda~g~~~~~v~~ 134 (528)
T KOG1595|consen 56 LNQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDEHCAVLGRSVGDTERTYHLRY-YKTLPCVTDARGNCVKNVLH 134 (528)
T ss_pred hccccccchhhhcCccccccceeecchhhccccCCCCcccchhcccccCCcceeEeccc-cccccCccccCCCcccCccc
Confidence 355678887777655555555444122344433333444 2222234456677777777 888888888888766 45
Q ss_pred HHHhcC---cHHHHHHHHHcC
Q psy633 277 YAKAIE---HTDLIEYLVNSG 294 (300)
Q Consensus 277 ~A~~~g---~~~iv~~Ll~~g 294 (300)
.|...+ .-..++.|++.+
T Consensus 135 ~~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 135 CAFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred ccccCCccccccHHHHHHhcc
Confidence 454443 345677776654
No 277
>KOG0126|consensus
Probab=28.86 E-value=3.5 Score=32.51 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHhhhhcccccCCChHHHHHHHHhhccccccc
Q psy633 80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
+.|+.|+++++..+++.+++-.|++|+.+....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin 66 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN 66 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEE
Confidence 678889999999999999999999999876443
No 278
>KOG2591|consensus
Probab=27.86 E-value=31 Score=32.30 Aligned_cols=29 Identities=10% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEecChHHHHHHHh-c--CCceecCccceec
Q psy633 19 FVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQ 47 (300)
Q Consensus 19 fv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~ 47 (300)
||||+++.+|+.|.+ + .-.+|.|++|..+
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 899999999999987 3 3567889887543
No 279
>KOG0149|consensus
Probab=27.60 E-value=35 Score=28.27 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=26.6
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++|.+.-..|.|.+.|..|+.+..-.+-.
T Consensus 16 fVggL~w~T~~~~l~~yFeqfGeI~eavvit 46 (247)
T KOG0149|consen 16 FVGGLAWETHKETLRRYFEQFGEIVEAVVIT 46 (247)
T ss_pred EEcCcccccchHHHHHHHHHhCceEEEEEEe
Confidence 8999999999999999999999877654433
No 280
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=25.81 E-value=39 Score=25.59 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=54.1
Q ss_pred ccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccC-
Q psy633 14 SKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKK- 92 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~- 92 (300)
.+|+..+.|.+++++.+++......++|..+.+....|........... ...+..+.+++..
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~-----------------~~vWVri~glP~~~ 116 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEH-----------------IPVWVRIYGLPLHL 116 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceec-----------------cchhhhhccCCHHH
Confidence 4689999999999999999878888899888887776543322211111 1122244566644
Q ss_pred CChHHHHHHHHhhcccccccC
Q psy633 93 LDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 93 ~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.+++.+..+.+..|....-+.
T Consensus 117 ~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 117 WSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhHHHHHHHHhcCCeEEEEc
Confidence 466667777776676654443
No 281
>PLN03213 repressor of silencing 3; Provisional
Probab=23.81 E-value=51 Score=30.47 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=45.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC---CCCCccchhhh--HHH-HHHHHcC-------CCCHHHHHHHHHHHH
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI---DKPSWYNMEAK--SKY-NAWNSLG-------QMAKSEAMSKYIALL 151 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~---~~p~~~~~~~~--~k~-~aw~~~~-------~~~~~~a~~~yi~~v 151 (300)
||++|...++++++...|..||.+....... ..-++.++... ..+ .+...+. .+..+.|+..|++.+
T Consensus 14 YVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~YLeRL 93 (759)
T PLN03213 14 HVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHYLARL 93 (759)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHHHHHH
Confidence 9999999999999999999999876544321 11233444332 222 2333333 255668889998887
Q ss_pred Hhh
Q psy633 152 NEV 154 (300)
Q Consensus 152 ~~l 154 (300)
+.-
T Consensus 94 krE 96 (759)
T PLN03213 94 KRE 96 (759)
T ss_pred HHH
Confidence 653
No 282
>KOG0107|consensus
Probab=23.39 E-value=59 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.4
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccCCCCCCCc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSW 120 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~ 120 (300)
.||.+|....+..+|...|..|+.+-..=+.-..||+
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf 49 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF 49 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc
Confidence 3999999999999999999999965533222234543
No 283
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=23.38 E-value=1.6e+02 Score=23.55 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHH-HhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHh
Q psy633 207 YEWA-KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE 258 (300)
Q Consensus 207 l~~a-~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 258 (300)
|.+| ..|-+.-+.+.|.. |.+++. ++|..|+..+|..++.+++.
T Consensus 147 l~~a~~kgll~F~letlky--gg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 147 LEKAAAKGLLPFVLETLKY--GGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHCCCHHHHHHHHHc--CCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 4445 45667888888877 555543 79999999999999998874
No 284
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=23.26 E-value=80 Score=25.25 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.2
Q ss_pred EEEEecChHHHHHHHh-cC--CceecCccceecCCCCC
Q psy633 18 GFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~ 52 (300)
-.|.|.+.++|.+|.. ++ +..+.|..+++..+++.
T Consensus 34 i~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 34 IRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp EEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred EEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 5789999999999988 77 88899999998877433
No 285
>KOG4307|consensus
Probab=23.20 E-value=59 Score=31.50 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=30.8
Q ss_pred ccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
--|=+||.|.+.|+|.-||-.++-.|.|-+|++-.+.
T Consensus 39 e~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSS 75 (944)
T KOG4307|consen 39 EEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSS 75 (944)
T ss_pred cccceEEEecccchhhhhhhhcccceecceEEEEecc
Confidence 3478999999999999999888888999887776553
No 286
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=22.95 E-value=78 Score=22.47 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=16.4
Q ss_pred CCCCCccCeEEEEecChHHHHHH
Q psy633 9 KNTGLSKGFGFVTFQNKEAVDKV 31 (300)
Q Consensus 9 ~~t~~~rGfgfv~f~~~~~~~~a 31 (300)
-..|+|.|||.| |++.+.+.+.
T Consensus 60 fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 60 YGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCceEEEEEEE-ECCHHHHHhh
Confidence 356889999987 7887776653
No 287
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=22.86 E-value=76 Score=27.50 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCCccccCcCCchHH-HHHHHCCCHHHH
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCL-HWACDRGHLKVV 253 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~L-h~A~~~g~~~~v 253 (300)
.+..+|+. +|..+..+...|.|++ |-|..+|.+++.
T Consensus 51 m~~~lle~-~~~kv~~~~~lG~t~v~~~Al~~G~IDiY 87 (300)
T COG1732 51 ILKQLLEK-NGIKVEDKTGLGGTAVVRNALKSGDIDIY 87 (300)
T ss_pred HHHHHHHh-cCCceeeccCCCchHHHHHHHHcCCCCeE
Confidence 34445555 5666666666677744 777777777663
No 288
>KOG0121|consensus
Probab=21.82 E-value=55 Score=24.48 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=29.1
Q ss_pred hhhhhHHHHHhhhhcccccCCChHHHHHHHHhhccc
Q psy633 73 ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 73 ~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
+.++..-+..+.||+++....++|.+.+||+..+.+
T Consensus 28 e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~i 63 (153)
T KOG0121|consen 28 EQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDI 63 (153)
T ss_pred HHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccch
Confidence 444555567778999999999999999999988754
No 289
>KOG4591|consensus
Probab=21.21 E-value=71 Score=25.85 Aligned_cols=48 Identities=31% Similarity=0.263 Sum_probs=35.3
Q ss_pred CcCCchHHHHHHHCCCHHHHH-HHHhhcC----CCccccCCCCCcHHHHHHhcC
Q psy633 234 DENGLNCLHWACDRGHLKVVQ-HLIEKCG----ADVNVTDSDGDYGLDYAKAIE 282 (300)
Q Consensus 234 d~~g~t~Lh~A~~~g~~~~v~-~Ll~~~g----~~~~~~d~~g~TpL~~A~~~g 282 (300)
|.....|||-|..-++.+++- |+++ .. .-+|-.|.+|..+|.+|....
T Consensus 219 d~kTe~~LHk~iki~REDVl~LYfie-~dakiP~~LNd~D~nG~~ALdiAL~~~ 271 (280)
T KOG4591|consen 219 DGKTENPLHKAIKIEREDVLFLYFIE-MDAKIPGILNDADHNGALALDIALCRE 271 (280)
T ss_pred cCCCcchhHHhhhccccceeeehhhh-ccccccccccccCCCchHHHHHHHHHH
Confidence 334456999999999988864 4554 43 346778899999999996653
Done!