Query psy633
Match_columns 300
No_of_seqs 473 out of 3850
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 23:39:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.9 6.5E-27 2.2E-31 184.9 8.5 152 140-299 9-164 (169)
2 1hbk_A ACBP, acyl-COA binding 99.9 4.2E-24 1.4E-28 147.7 9.0 85 75-159 2-88 (89)
3 4gpm_A Engineered protein OR26 99.9 4.9E-24 1.7E-28 168.4 9.6 120 178-299 8-131 (169)
4 1st7_A ACBP, acyl-COA-binding 99.9 3.3E-24 1.1E-28 147.2 5.9 85 75-159 1-85 (86)
5 3epy_A Acyl-COA-binding domain 99.9 7.2E-24 2.5E-28 145.8 7.3 85 74-158 3-87 (89)
6 2cop_A Acyl-coenzyme A binding 99.9 1.4E-23 4.9E-28 149.8 8.5 88 73-160 6-93 (109)
7 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.7E-23 1.6E-27 146.2 11.1 93 202-296 1-93 (93)
8 2lbb_A Acyl COA binding protei 99.9 2E-23 6.9E-28 144.7 6.0 83 77-159 12-95 (96)
9 2cqu_A Peroxisomal D3,D2-enoyl 99.9 7.5E-23 2.6E-27 146.9 9.1 87 74-160 15-101 (116)
10 2cb8_A Acyl-COA-binding protei 99.9 3.6E-23 1.2E-27 142.0 7.2 83 76-158 3-85 (87)
11 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.2E-22 1.1E-26 156.4 10.4 147 141-296 11-162 (162)
12 1oy3_D Transcription factor in 99.9 3.6E-22 1.2E-26 169.8 10.6 151 142-300 52-254 (282)
13 4b93_B Ankyrin repeat domain-c 99.9 1.5E-22 5E-27 172.0 7.7 127 172-300 84-214 (269)
14 3flv_A Acyl-COA-binding domain 99.9 2.2E-22 7.5E-27 144.3 7.0 89 72-160 21-113 (119)
15 1d9s_A Cyclin-dependent kinase 99.9 5.5E-23 1.9E-27 156.4 3.0 121 173-296 11-136 (136)
16 2y1l_E Darpin-8.4; hydrolase-i 99.9 7.1E-22 2.4E-26 155.8 9.5 145 142-294 21-169 (169)
17 2wh5_A Acyl-COA-binding domain 99.9 2.5E-22 8.6E-27 142.2 6.0 88 73-160 6-97 (106)
18 3v31_A Ankyrin repeat family A 99.9 7.7E-22 2.6E-26 155.2 9.0 147 141-295 9-159 (167)
19 3fp5_A Acyl-COA binding protei 99.9 5.6E-22 1.9E-26 140.2 7.3 84 74-157 3-90 (106)
20 3v30_A DNA-binding protein rfx 99.9 4.2E-22 1.4E-26 157.4 7.2 151 141-298 8-162 (172)
21 3aaa_C Myotrophin, protein V-1 99.9 4.3E-21 1.5E-25 143.2 11.9 98 200-299 4-101 (123)
22 1awc_B Protein (GA binding pro 99.9 3.8E-21 1.3E-25 149.1 11.8 140 142-290 9-152 (153)
23 3twr_A Tankyrase-2; ankyrin re 99.9 1.2E-20 4.2E-25 147.9 14.9 146 142-295 15-164 (165)
24 3v30_A DNA-binding protein rfx 99.9 1.6E-21 5.5E-26 154.1 9.6 123 175-299 3-130 (172)
25 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-22 4E-27 158.2 2.9 124 173-299 11-139 (156)
26 2jab_A H10-2-G3; HER2, darpin, 99.9 7.6E-21 2.6E-25 144.4 12.6 96 197-294 41-136 (136)
27 3f6q_A Integrin-linked protein 99.9 2.4E-21 8.4E-26 154.1 10.1 153 140-299 10-166 (179)
28 3c5r_A BARD-1, BRCA1-associate 99.9 4.7E-21 1.6E-25 145.7 11.2 100 198-299 5-104 (137)
29 1ycs_B 53BP2, P53BP2; ankyrin 99.8 2.8E-21 9.6E-26 161.1 10.5 124 174-299 5-131 (239)
30 2rfm_A Putative ankyrin repeat 99.8 1.3E-21 4.5E-26 157.4 7.8 125 173-299 34-162 (192)
31 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-21 6.2E-26 143.4 7.0 99 199-299 5-103 (115)
32 3f6q_A Integrin-linked protein 99.8 8.6E-22 2.9E-26 156.8 5.6 123 175-299 6-133 (179)
33 1n0r_A 4ANK, 4 ankyrin repeats 99.8 2E-21 7E-26 144.9 7.3 98 197-296 29-126 (126)
34 1yyh_A HN1;, notch 1, ankyrin 99.8 1.9E-21 6.5E-26 163.4 7.6 150 142-299 64-218 (253)
35 4b93_B Ankyrin repeat domain-c 99.8 6.9E-21 2.4E-25 161.6 11.0 157 141-299 17-180 (269)
36 2dzn_A Probable 26S proteasome 99.8 4.2E-21 1.4E-25 158.3 9.4 153 142-299 43-203 (228)
37 3aji_A 26S proteasome non-ATPa 99.8 4E-21 1.4E-25 158.8 9.1 150 142-299 47-200 (231)
38 2y1l_E Darpin-8.4; hydrolase-i 99.8 3.7E-21 1.3E-25 151.7 8.4 122 176-299 16-141 (169)
39 2f8y_A Notch homolog 1, transl 99.8 7E-21 2.4E-25 156.5 10.0 150 142-299 32-186 (223)
40 1d9s_A Cyclin-dependent kinase 99.8 6E-21 2.1E-25 145.0 8.7 100 197-299 6-106 (136)
41 2jab_A H10-2-G3; HER2, darpin, 99.8 3E-20 1E-24 141.1 10.7 98 200-299 11-108 (136)
42 1oy3_D Transcription factor in 99.8 3.7E-21 1.3E-25 163.6 6.3 154 142-300 16-221 (282)
43 1k1a_A B-cell lymphoma 3-encod 99.8 1.2E-20 4E-25 156.8 8.9 150 142-299 53-211 (241)
44 3b7b_A Euchromatic histone-lys 99.8 1.6E-20 5.5E-25 155.8 9.7 150 142-299 51-205 (237)
45 1s70_B 130 kDa myosin-binding 99.8 9.4E-21 3.2E-25 162.7 8.3 150 142-299 47-260 (299)
46 2xai_A ASB-9, ankyrin repeat a 99.8 1.1E-20 3.7E-25 159.6 8.4 149 142-299 43-194 (261)
47 1ikn_D Protein (I-kappa-B-alph 99.8 2.2E-21 7.7E-26 161.1 4.0 149 142-298 52-211 (236)
48 1ihb_A P18-INK4C(INK6), cyclin 99.8 6E-21 2.1E-25 149.1 5.8 119 176-297 7-129 (162)
49 3aji_A 26S proteasome non-ATPa 99.8 1.7E-20 5.7E-25 155.1 8.8 152 141-299 12-167 (231)
50 1yyh_A HN1;, notch 1, ankyrin 99.8 7.1E-21 2.4E-25 159.9 6.6 150 143-299 31-185 (253)
51 2rfa_A Transient receptor pote 99.8 1.6E-20 5.4E-25 155.4 8.6 149 142-298 10-185 (232)
52 2rfm_A Putative ankyrin repeat 99.8 3.7E-21 1.3E-25 154.8 4.5 145 142-294 42-190 (192)
53 3v31_A Ankyrin repeat family A 99.8 4.1E-21 1.4E-25 151.0 4.4 125 173-299 2-130 (167)
54 3hra_A Ankyrin repeat family p 99.8 2.4E-20 8.1E-25 150.9 8.8 152 142-299 12-173 (201)
55 3ui2_A Signal recognition part 99.8 4.3E-20 1.5E-24 154.5 10.4 118 179-299 20-139 (244)
56 1n11_A Ankyrin; clathrin, BAND 99.8 1.6E-20 5.6E-25 169.9 7.8 125 173-299 244-372 (437)
57 1wdy_A 2-5A-dependent ribonucl 99.8 2.7E-20 9.1E-25 158.1 8.6 158 142-300 112-282 (285)
58 4hbd_A KN motif and ankyrin re 99.8 2.6E-20 8.8E-25 158.7 8.4 153 141-299 82-245 (276)
59 1bd8_A P19INK4D CDK4/6 inhibit 99.8 1.7E-19 6E-24 139.9 12.4 143 142-293 9-155 (156)
60 3hra_A Ankyrin repeat family p 99.8 2.3E-20 7.8E-25 151.0 7.6 145 142-294 46-201 (201)
61 2f8y_A Notch homolog 1, transl 99.8 3E-20 1E-24 152.7 8.2 150 142-298 65-218 (223)
62 3deo_A Signal recognition part 99.8 7.9E-20 2.7E-24 146.0 10.4 99 198-299 39-138 (183)
63 3ljn_A Hypothetical protein; a 99.8 9.2E-21 3.2E-25 167.5 5.2 96 199-296 169-269 (364)
64 1ikn_D Protein (I-kappa-B-alph 99.8 4.7E-20 1.6E-24 153.1 9.2 154 142-299 15-179 (236)
65 2dzn_A Probable 26S proteasome 99.8 4.1E-20 1.4E-24 152.4 8.6 151 142-299 9-169 (228)
66 3lvq_E ARF-GAP with SH3 domain 99.8 1E-19 3.6E-24 167.5 12.2 99 199-299 167-268 (497)
67 2vge_A RELA-associated inhibit 99.8 3.5E-20 1.2E-24 153.6 8.0 101 197-299 48-151 (229)
68 3ehr_A Osteoclast-stimulating 99.8 8.3E-20 2.8E-24 150.3 10.1 98 200-299 70-168 (222)
69 1dcq_A PYK2-associated protein 99.8 9.4E-20 3.2E-24 155.3 10.6 98 199-298 165-265 (278)
70 3twr_A Tankyrase-2; ankyrin re 99.8 1.2E-20 4.2E-25 147.9 4.6 122 176-299 10-136 (165)
71 1ycs_B 53BP2, P53BP2; ankyrin 99.8 2.7E-21 9.3E-26 161.2 0.8 149 142-299 12-167 (239)
72 2vge_A RELA-associated inhibit 99.8 1.5E-19 5.2E-24 149.7 11.4 100 198-299 16-115 (229)
73 2xai_A ASB-9, ankyrin repeat a 99.8 4.2E-20 1.4E-24 155.9 7.9 150 141-299 9-162 (261)
74 3b7b_A Euchromatic histone-lys 99.8 9.6E-20 3.3E-24 151.1 9.7 150 142-299 18-172 (237)
75 2rfa_A Transient receptor pote 99.8 6.2E-20 2.1E-24 151.8 8.3 124 174-299 3-149 (232)
76 3d9h_A CDNA FLJ77766, highly s 99.8 4.6E-20 1.6E-24 157.8 7.7 149 142-299 99-250 (285)
77 3utm_A Tankyrase-1; tankyrase, 99.8 1.2E-19 4E-24 158.9 10.0 99 200-300 208-309 (351)
78 4hbd_A KN motif and ankyrin re 99.8 5.5E-20 1.9E-24 156.6 7.5 146 142-294 118-273 (276)
79 1awc_B Protein (GA binding pro 99.8 6.5E-20 2.2E-24 142.0 7.3 120 178-299 6-128 (153)
80 3d9h_A CDNA FLJ77766, highly s 99.8 4.2E-19 1.4E-23 151.8 12.7 124 173-299 58-185 (285)
81 1bi7_B P16INK4A, MTS1, multipl 99.8 7.6E-20 2.6E-24 142.2 7.3 99 198-299 7-106 (156)
82 1n0r_A 4ANK, 4 ankyrin repeats 99.8 3.7E-19 1.3E-23 132.6 10.7 96 202-299 1-96 (126)
83 1sw6_A Regulatory protein SWI6 99.8 3.5E-20 1.2E-24 161.7 5.9 151 143-300 105-312 (327)
84 4g8k_A 2-5A-dependent ribonucl 99.8 9.4E-20 3.2E-24 159.4 8.5 124 175-299 169-301 (337)
85 1bd8_A P19INK4D CDK4/6 inhibit 99.8 1.5E-19 5.2E-24 140.3 8.5 119 177-299 5-128 (156)
86 2fo1_E LIN-12 protein; beta-ba 99.8 1E-19 3.5E-24 161.6 8.6 151 142-299 173-341 (373)
87 3t8k_A Uncharacterized protein 99.8 3E-20 1E-24 148.9 4.5 147 141-295 12-178 (186)
88 2zgd_A 3 repeat synthetic anky 99.8 3.9E-19 1.3E-23 129.9 9.9 92 197-290 18-109 (110)
89 2pnn_A Transient receptor pote 99.8 4.4E-20 1.5E-24 156.7 4.6 126 173-299 100-262 (273)
90 2etb_A Transient receptor pote 99.8 6.8E-20 2.3E-24 154.0 5.3 126 171-297 40-207 (256)
91 3utm_A Tankyrase-1; tankyrase, 99.8 2.1E-18 7E-23 150.9 14.9 101 197-299 52-152 (351)
92 3ehr_A Osteoclast-stimulating 99.8 2.2E-20 7.6E-25 153.7 1.8 124 175-299 74-201 (222)
93 3kea_A K1L; tropism, ANK repea 99.8 6.7E-20 2.3E-24 156.8 4.6 148 142-299 38-223 (285)
94 3jxi_A Vanilloid receptor-rela 99.8 1.1E-19 3.8E-24 152.9 5.9 126 172-298 44-212 (260)
95 3ljn_A Hypothetical protein; a 99.8 1.5E-19 5.1E-24 159.7 6.6 99 199-299 134-239 (364)
96 1wdy_A 2-5A-dependent ribonucl 99.8 4.2E-19 1.4E-23 150.7 8.9 151 142-299 12-177 (285)
97 1s70_B 130 kDa myosin-binding 99.8 2E-18 6.8E-23 148.1 13.1 99 199-299 36-134 (299)
98 1n11_A Ankyrin; clathrin, BAND 99.8 3.2E-19 1.1E-23 161.4 8.3 150 142-299 186-339 (437)
99 2pnn_A Transient receptor pote 99.8 1.3E-19 4.3E-24 153.9 5.0 127 171-298 51-220 (273)
100 2etb_A Transient receptor pote 99.8 9.2E-20 3.2E-24 153.2 3.7 123 173-296 89-246 (256)
101 3c5r_A BARD-1, BRCA1-associate 99.8 2.8E-20 9.4E-25 141.4 0.3 124 172-297 8-135 (137)
102 3jxi_A Vanilloid receptor-rela 99.8 7.8E-20 2.7E-24 153.9 2.9 124 173-297 92-251 (260)
103 3kea_A K1L; tropism, ANK repea 99.8 2.4E-19 8.4E-24 153.3 5.7 125 172-298 29-156 (285)
104 1k1a_A B-cell lymphoma 3-encod 99.8 1.2E-18 4.1E-23 144.7 9.2 156 140-299 14-178 (241)
105 2b0o_E UPLC1; arfgap, structur 99.8 1.1E-18 3.8E-23 150.4 9.3 98 199-298 186-286 (301)
106 4g8k_A 2-5A-dependent ribonucl 99.8 3.4E-18 1.2E-22 149.5 12.0 147 141-299 174-329 (337)
107 3ui2_A Signal recognition part 99.8 4.1E-19 1.4E-23 148.5 5.1 119 175-295 46-184 (244)
108 3eu9_A Huntingtin-interacting 99.7 8.4E-19 2.9E-23 145.2 5.8 123 174-298 109-237 (240)
109 3t8k_A Uncharacterized protein 99.7 1.4E-19 4.8E-24 145.0 0.8 121 178-300 10-150 (186)
110 2fo1_E LIN-12 protein; beta-ba 99.7 2.5E-18 8.5E-23 152.6 8.4 132 166-299 117-266 (373)
111 3aaa_C Myotrophin, protein V-1 99.7 3E-18 1E-22 127.6 7.2 88 197-286 34-121 (123)
112 3deo_A Signal recognition part 99.7 1.6E-17 5.3E-22 132.6 11.8 95 197-293 70-181 (183)
113 3eu9_A Huntingtin-interacting 99.7 1.8E-18 6.2E-23 143.1 6.4 151 142-299 49-205 (240)
114 3jue_A Arfgap with coiled-coil 99.7 2E-18 6.9E-23 152.4 6.8 117 177-295 202-325 (368)
115 3jue_A Arfgap with coiled-coil 99.7 3.4E-17 1.2E-21 144.5 11.7 98 200-299 196-296 (368)
116 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-16 4.2E-21 147.0 10.7 93 205-300 134-236 (497)
117 1dcq_A PYK2-associated protein 99.7 2.5E-16 8.4E-21 134.1 11.7 94 204-300 131-234 (278)
118 2b0o_E UPLC1; arfgap, structur 99.7 2.5E-16 8.7E-21 135.6 11.8 94 204-300 152-255 (301)
119 1n0q_A 3ANK, 3 ankyrin repeats 99.7 2.1E-16 7.1E-21 111.6 8.1 63 236-299 1-63 (93)
120 1sw6_A Regulatory protein SWI6 99.7 1.1E-16 3.6E-21 139.6 7.4 95 197-293 124-227 (327)
121 2aja_A Ankyrin repeat family p 99.6 3.7E-18 1.3E-22 151.2 -3.7 91 201-294 126-222 (376)
122 2aja_A Ankyrin repeat family p 99.6 2.5E-18 8.7E-23 152.3 -10.4 144 142-297 99-251 (376)
123 2zgd_A 3 repeat synthetic anky 99.6 4.4E-15 1.5E-19 108.2 7.9 70 229-299 16-85 (110)
124 2l6b_A NR1C; ankyrin, consensu 99.5 3.5E-15 1.2E-19 109.4 2.0 101 173-275 8-112 (115)
125 4fxv_A ELAV-like protein 1; RN 99.3 1.9E-12 6.4E-17 92.2 5.3 50 2-51 48-98 (99)
126 3p5t_L Cleavage and polyadenyl 99.3 1.6E-12 5.4E-17 91.0 4.2 53 2-54 32-85 (90)
127 2lxi_A RNA-binding protein 10; 99.3 1.3E-12 4.3E-17 91.7 3.6 53 2-54 31-85 (91)
128 2lkz_A RNA-binding protein 5; 99.3 1.5E-12 5.2E-17 91.8 3.6 50 2-51 40-94 (95)
129 3s8s_A Histone-lysine N-methyl 99.3 3.4E-12 1.2E-16 92.7 5.5 51 2-52 35-86 (110)
130 1l3k_A Heterogeneous nuclear r 99.3 6.7E-12 2.3E-16 100.7 6.9 95 2-113 42-136 (196)
131 4f02_A Polyadenylate-binding p 99.3 1E-11 3.5E-16 101.2 7.6 91 2-113 44-135 (213)
132 3ns6_A Eukaryotic translation 99.2 2.2E-12 7.6E-17 92.1 2.9 51 2-52 41-93 (100)
133 1fxl_A Paraneoplastic encephal 99.2 2.2E-11 7.5E-16 95.0 7.9 89 2-113 31-120 (167)
134 1b7f_A Protein (SXL-lethal pro 99.2 1.4E-11 4.8E-16 96.2 6.5 89 2-113 32-121 (168)
135 3md1_A Nuclear and cytoplasmic 99.2 2.2E-11 7.6E-16 83.6 5.7 52 2-53 30-82 (83)
136 2cjk_A Nuclear polyadenylated 99.2 2.1E-11 7.2E-16 95.2 6.3 89 2-114 32-120 (167)
137 2mss_A Protein (musashi1); RNA 99.2 1.6E-11 5.5E-16 82.6 4.4 48 2-49 28-75 (75)
138 3n9u_C Cleavage and polyadenyl 99.2 1.5E-11 5.1E-16 95.0 4.8 52 2-53 86-138 (156)
139 2dnn_A RNA-binding protein 12; 99.2 1.5E-11 5E-16 89.0 4.4 51 1-52 43-93 (109)
140 2dgs_A DAZ-associated protein 99.2 3.1E-11 1.1E-15 85.9 5.9 53 2-54 39-91 (99)
141 2qfj_A FBP-interacting repress 99.2 4.5E-11 1.5E-15 97.4 7.1 100 2-113 57-157 (216)
142 4f25_A Polyadenylate-binding p 99.2 2.4E-11 8.3E-16 89.0 4.9 51 2-54 34-85 (115)
143 2dng_A Eukaryotic translation 99.2 3.4E-11 1.1E-15 86.4 5.5 53 2-54 43-95 (103)
144 2rs2_A Musashi-1, RNA-binding 99.2 3.8E-11 1.3E-15 87.1 5.5 54 2-55 54-107 (109)
145 1wez_A HnRNP H', FTP-3, hetero 99.1 2.3E-11 8E-16 87.0 4.3 51 2-53 43-93 (102)
146 1fje_B Nucleolin RBD12, protei 99.1 1.7E-11 5.8E-16 96.6 3.7 86 5-111 44-129 (175)
147 3bs9_A Nucleolysin TIA-1 isofo 99.1 3.9E-11 1.3E-15 83.1 4.9 51 2-52 35-86 (87)
148 2fc8_A NCL protein; structure 99.1 4.9E-11 1.7E-15 85.3 5.3 53 2-54 41-94 (102)
149 1x5t_A Splicing factor 3B subu 99.1 5E-11 1.7E-15 84.3 5.2 53 2-54 34-88 (96)
150 2j76_E EIF-4B, EIF4B, eukaryot 99.1 5.5E-11 1.9E-15 84.8 5.2 52 2-53 47-99 (100)
151 2x1f_A MRNA 3'-END-processing 99.1 6.8E-11 2.3E-15 83.6 5.6 53 2-54 31-84 (96)
152 3s7r_A Heterogeneous nuclear r 99.1 5.8E-11 2E-15 82.3 5.0 48 2-49 40-87 (87)
153 2dnz_A Probable RNA-binding pr 99.1 9.4E-11 3.2E-15 82.6 6.0 53 2-54 34-87 (95)
154 2ki2_A SS-DNA binding protein 99.1 6.5E-11 2.2E-15 82.6 5.0 52 2-54 30-82 (90)
155 1iqt_A AUF1, heterogeneous nuc 99.1 3.7E-11 1.3E-15 80.8 3.6 48 2-49 28-75 (75)
156 1s79_A Lupus LA protein; RRM, 99.1 2.7E-11 9.2E-16 86.8 2.8 48 2-50 40-87 (103)
157 2m2b_A RNA-binding protein 10; 99.1 3E-11 1E-15 90.7 3.0 52 2-54 54-110 (131)
158 2cpz_A CUG triplet repeat RNA- 99.1 9E-11 3.1E-15 85.9 5.5 54 1-54 53-107 (115)
159 2dgw_A Probable RNA-binding pr 99.1 6.9E-11 2.4E-15 82.7 4.6 52 1-53 37-88 (91)
160 2dh8_A DAZ-associated protein 99.1 7.8E-11 2.7E-15 84.7 5.0 54 2-55 45-98 (105)
161 2jrs_A RNA-binding protein 39; 99.1 9.8E-11 3.4E-15 84.7 5.5 52 2-53 55-107 (108)
162 3ucg_A Polyadenylate-binding p 99.1 1.3E-10 4.3E-15 80.9 5.9 51 2-52 35-85 (89)
163 3smz_A Protein raver-1, ribonu 99.1 8.1E-11 2.8E-15 100.1 5.9 93 2-114 124-218 (284)
164 1whw_A Hypothetical protein ri 99.1 1E-10 3.4E-15 83.2 5.4 53 2-54 37-90 (99)
165 1x4b_A Heterogeneous nuclear r 99.1 1.2E-10 4.1E-15 85.3 6.0 53 2-54 56-108 (116)
166 2cq0_A Eukaryotic translation 99.1 1E-10 3.5E-15 83.8 5.4 53 2-54 44-97 (103)
167 1p1t_A Cleavage stimulation fa 99.1 9.6E-11 3.3E-15 84.1 5.2 54 2-55 37-91 (104)
168 2hgm_A HNRPF protein, heteroge 99.1 3E-11 1E-15 89.4 2.6 50 2-52 72-121 (126)
169 2cpe_A RNA-binding protein EWS 99.1 1.1E-10 3.6E-15 85.2 5.4 53 2-54 52-105 (113)
170 2cqb_A Peptidyl-prolyl CIS-tra 99.1 6.5E-11 2.2E-15 84.7 4.1 53 2-54 41-94 (102)
171 2la6_A RNA-binding protein FUS 99.1 1.1E-10 3.8E-15 82.9 5.3 48 3-50 51-99 (99)
172 1wi8_A EIF-4B, eukaryotic tran 99.1 9.8E-11 3.4E-15 84.1 5.0 53 2-54 43-96 (104)
173 1x5u_A Splicing factor 3B subu 99.1 1.2E-10 4E-15 83.8 5.2 53 2-54 44-97 (105)
174 2kxn_B Transformer-2 protein h 99.1 1.9E-10 6.5E-15 85.9 6.5 52 2-53 75-127 (129)
175 1x4h_A RNA-binding protein 28; 99.1 1.3E-10 4.4E-15 84.5 5.4 53 2-54 44-103 (111)
176 1p27_B RNA-binding protein 8A; 99.1 9.8E-11 3.3E-15 84.3 4.7 52 2-53 52-104 (106)
177 3md3_A Nuclear and cytoplasmic 99.1 1.9E-10 6.3E-15 89.5 6.6 90 2-113 29-119 (166)
178 2dhg_A TRNA selenocysteine ass 99.1 1.6E-10 5.5E-15 82.9 5.7 53 2-55 39-93 (104)
179 2cpy_A RNA-binding protein 12; 99.1 5E-11 1.7E-15 87.1 3.0 51 2-53 45-95 (114)
180 2dgo_A Cytotoxic granule-assoc 99.1 1.5E-10 5E-15 84.7 5.5 54 2-55 44-98 (115)
181 2hgl_A HNRPF protein, heteroge 99.1 4.7E-11 1.6E-15 89.8 2.8 50 2-52 76-125 (136)
182 2pe8_A Splicing factor 45; RRM 99.1 1.3E-10 4.3E-15 83.4 4.9 50 2-51 42-93 (105)
183 3mdf_A Peptidyl-prolyl CIS-tra 99.1 1.4E-10 4.7E-15 80.0 4.8 49 2-50 36-85 (85)
184 1x5s_A Cold-inducible RNA-bind 99.1 1.1E-10 3.9E-15 83.4 4.4 53 2-54 41-94 (102)
185 2lmi_A GRSF-1, G-rich sequence 99.1 6.9E-11 2.4E-15 85.3 3.2 51 2-53 43-93 (107)
186 2dnm_A SRP46 splicing factor; 99.0 1E-10 3.4E-15 83.8 3.9 52 2-53 42-94 (103)
187 2do4_A Squamous cell carcinoma 99.0 1.7E-10 5.9E-15 82.1 5.1 52 2-54 46-98 (100)
188 2div_A TRNA selenocysteine ass 99.0 2.2E-10 7.5E-15 81.4 5.6 51 2-52 39-94 (99)
189 2cqc_A Arginine/serine-rich sp 99.0 2.2E-10 7.6E-15 80.7 5.4 50 2-51 44-94 (95)
190 1oo0_B CG8781-PA, drosophila Y 99.0 1.5E-10 5.1E-15 84.0 4.5 52 2-53 55-107 (110)
191 1uaw_A Mouse-musashi-1; RNP-ty 99.0 1.7E-10 5.7E-15 77.9 4.3 47 2-49 29-76 (77)
192 2dgp_A Bruno-like 4, RNA bindi 99.0 2.4E-10 8.1E-15 82.3 5.3 54 1-54 41-98 (106)
193 2e5h_A Zinc finger CCHC-type a 99.0 2.6E-10 8.8E-15 80.2 5.4 49 2-50 45-94 (94)
194 2cqp_A RNA-binding protein 12; 99.0 1.5E-10 5.3E-15 82.0 4.2 51 2-52 44-95 (98)
195 2fy1_A RNA-binding motif prote 99.0 3E-10 1E-14 83.2 5.9 53 1-54 35-88 (116)
196 1wg5_A Heterogeneous nuclear r 99.0 2E-10 7E-15 82.4 4.8 50 3-53 46-95 (104)
197 2cqg_A TDP-43, TAR DNA-binding 99.0 3.3E-10 1.1E-14 81.1 5.6 52 2-54 44-95 (103)
198 2db1_A Heterogeneous nuclear r 99.0 9.3E-11 3.2E-15 86.2 2.7 50 2-52 49-98 (118)
199 2dis_A Unnamed protein product 99.0 2.6E-10 9E-15 82.5 5.1 53 2-54 38-94 (109)
200 2jwn_A Embryonic polyadenylate 99.0 3.4E-10 1.2E-14 83.9 5.7 52 2-53 65-116 (124)
201 2ek1_A RNA-binding protein 12; 99.0 2.3E-10 7.8E-15 80.6 4.6 50 2-51 44-94 (95)
202 2cpf_A RNA binding motif prote 99.0 2.5E-10 8.6E-15 80.9 4.5 53 2-54 34-90 (98)
203 2cpi_A CCR4-NOT transcription 99.0 4.6E-10 1.6E-14 81.5 6.0 53 2-54 47-103 (111)
204 1fj7_A Nucleolin RBD1, protein 99.0 1.2E-10 4E-15 83.2 2.8 51 4-54 47-97 (101)
205 2dha_A FLJ20171 protein; RRM d 99.0 8.6E-11 2.9E-15 86.8 2.0 50 2-52 56-105 (123)
206 3q2s_C Cleavage and polyadenyl 99.0 1.5E-10 5.2E-15 95.2 3.5 52 2-53 99-151 (229)
207 2cph_A RNA binding motif prote 99.0 4.3E-10 1.5E-14 81.0 5.4 53 2-54 44-99 (107)
208 1x4e_A RNA binding motif, sing 99.0 2.2E-10 7.7E-15 78.9 3.7 49 2-50 34-83 (85)
209 2hgn_A Heterogeneous nuclear r 99.0 1.6E-10 5.3E-15 87.2 3.1 53 1-54 73-125 (139)
210 2kn4_A Immunoglobulin G-bindin 99.0 2.6E-10 9E-15 88.3 4.4 53 2-54 99-152 (158)
211 3nmr_A Cugbp ELAV-like family 99.0 4E-10 1.4E-14 88.4 5.4 90 2-113 32-127 (175)
212 1jmt_A Splicing factor U2AF 35 99.0 3.8E-10 1.3E-14 80.8 4.8 47 2-49 56-103 (104)
213 1u6f_A Tcubp1, RNA-binding pro 99.0 3.6E-10 1.2E-14 85.6 4.8 53 2-54 71-124 (139)
214 2g4b_A Splicing factor U2AF 65 99.0 5.1E-10 1.7E-14 87.7 5.8 85 6-113 42-126 (172)
215 2ghp_A U4/U6 snRNA-associated 99.0 5.4E-10 1.9E-14 95.4 6.5 97 2-115 147-245 (292)
216 2khc_A Testis-specific RNP-typ 99.0 4.6E-10 1.6E-14 82.4 5.1 48 2-49 69-117 (118)
217 1wel_A RNA-binding protein 12; 99.0 1.2E-10 4.2E-15 86.4 1.7 51 3-53 55-105 (124)
218 2lea_A Serine/arginine-rich sp 99.0 3.8E-10 1.3E-14 85.0 4.4 53 2-54 76-129 (135)
219 2cqd_A RNA-binding region cont 99.0 7E-10 2.4E-14 81.2 5.7 51 2-53 46-97 (116)
220 2cq4_A RNA binding motif prote 99.0 1.4E-10 4.8E-15 84.7 1.8 51 2-52 54-104 (114)
221 3ex7_B RNA-binding protein 8A; 98.9 4.5E-10 1.5E-14 83.5 4.2 53 2-54 51-104 (126)
222 3tyt_A Heterogeneous nuclear r 98.9 8.4E-10 2.9E-14 89.2 6.0 102 2-108 34-150 (205)
223 2dnh_A Bruno-like 5, RNA bindi 98.9 7.6E-10 2.6E-14 79.5 5.1 52 2-54 44-99 (105)
224 2d9p_A Polyadenylate-binding p 98.9 7.9E-10 2.7E-14 79.1 5.1 51 2-54 44-95 (103)
225 2j8a_A Histone-lysine N-methyl 98.9 3.8E-10 1.3E-14 82.3 3.3 50 1-50 34-94 (136)
226 2dgx_A KIAA0430 protein; RRM d 98.9 8.8E-10 3E-14 77.8 5.0 50 2-54 42-92 (96)
227 2fc9_A NCL protein; structure 98.9 8E-10 2.7E-14 78.8 4.7 52 2-54 41-93 (101)
228 2ywk_A Putative RNA-binding pr 98.9 1.2E-09 4E-14 76.9 5.5 49 2-51 45-94 (95)
229 4a8x_A RNA-binding protein wit 98.9 5.2E-10 1.8E-14 77.5 3.6 51 2-52 33-85 (88)
230 2kt5_A RNA and export factor-b 98.9 9.7E-10 3.3E-14 81.5 5.2 51 2-53 64-115 (124)
231 2krb_A Eukaryotic translation 98.9 8.8E-10 3E-14 75.2 4.5 44 2-47 36-81 (81)
232 3pgw_A U1-A; protein-RNA compl 98.9 1.3E-09 4.3E-14 92.6 6.5 43 11-53 48-91 (282)
233 2lcw_A RNA-binding protein FUS 98.4 1.3E-10 4.4E-15 85.2 0.0 52 3-54 45-97 (116)
234 2yh0_A Splicing factor U2AF 65 98.9 8.4E-10 2.9E-14 88.5 4.8 105 6-113 42-146 (198)
235 3ulh_A THO complex subunit 4; 98.9 1E-09 3.6E-14 79.0 4.8 48 2-50 58-106 (107)
236 2nlw_A Eukaryotic translation 98.9 8.2E-10 2.8E-14 79.3 4.1 49 2-52 50-100 (105)
237 1h2v_Z 20 kDa nuclear CAP bind 98.9 1.3E-09 4.3E-14 84.2 5.3 52 2-53 68-120 (156)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.9 1.2E-09 4E-14 82.8 4.8 48 2-49 92-140 (140)
239 1rk8_A CG8781-PA, CG8781-PA pr 98.9 1.2E-09 4.1E-14 85.2 4.6 54 2-55 101-155 (165)
240 3v4m_A Splicing factor U2AF 65 98.9 9.2E-10 3.2E-14 78.9 3.6 49 2-50 44-95 (105)
241 2a3j_A U1 small nuclear ribonu 98.9 2.6E-09 9.1E-14 79.2 6.2 45 10-54 67-112 (127)
242 2dgv_A HnRNP M, heterogeneous 98.9 1.9E-09 6.7E-14 75.3 5.0 51 2-54 37-88 (92)
243 2xs2_A Deleted in azoospermia- 98.9 6E-10 2E-14 79.6 2.0 51 2-54 38-88 (102)
244 2do0_A HnRNP M, heterogeneous 98.8 3E-09 1E-13 77.5 5.4 50 2-52 44-94 (114)
245 2cq3_A RNA-binding protein 9; 98.8 3.7E-09 1.3E-13 75.5 5.9 52 2-55 44-96 (103)
246 1x5o_A RNA binding motif, sing 98.8 2.8E-09 9.6E-14 77.7 5.3 50 2-52 54-112 (114)
247 2cqi_A Nucleolysin TIAR; RNA r 98.8 3.4E-09 1.2E-13 75.7 5.6 51 2-54 44-95 (103)
248 2wbr_A GW182, gawky, LD47780P; 98.8 3.6E-09 1.2E-13 72.1 5.1 37 14-50 42-79 (89)
249 1l3k_A Heterogeneous nuclear r 98.8 2.9E-09 9.7E-14 85.2 5.5 55 2-56 133-187 (196)
250 2adc_A Polypyrimidine tract-bi 98.8 6.3E-09 2.2E-13 85.6 7.1 107 2-113 64-184 (229)
251 2err_A Ataxin-2-binding protei 98.8 3.8E-09 1.3E-13 76.3 4.9 49 2-52 58-107 (109)
252 2cpx_A Hypothetical protein FL 98.8 1.9E-09 6.7E-14 78.6 3.3 50 5-54 57-107 (115)
253 3ue2_A Poly(U)-binding-splicin 98.8 2.1E-09 7.3E-14 78.6 3.5 49 2-50 54-107 (118)
254 1fjc_A Nucleolin RBD2, protein 98.8 1.8E-09 6.2E-14 76.1 2.2 46 9-54 47-93 (96)
255 1qm9_A Polypyrimidine tract-bi 98.8 5.9E-09 2E-13 83.6 5.4 107 2-113 33-153 (198)
256 2qfj_A FBP-interacting repress 98.7 1.1E-08 3.7E-13 83.1 5.8 53 2-54 154-207 (216)
257 2f3j_A RNA and export factor b 98.7 1.2E-08 4.2E-13 80.3 5.2 50 2-52 117-167 (177)
258 1sjq_A Polypyrimidine tract-bi 98.7 1.5E-08 5.3E-13 72.1 5.1 48 2-55 45-95 (105)
259 2ghp_A U4/U6 snRNA-associated 98.7 3.1E-08 1.1E-12 84.4 7.9 80 2-113 70-150 (292)
260 2jvr_A Nucleolar protein 3; RN 98.7 1.1E-08 3.8E-13 73.9 4.2 41 12-52 64-105 (111)
261 2dit_A HIV TAT specific factor 98.7 1.9E-08 6.6E-13 73.0 5.4 49 2-54 55-104 (112)
262 3lqv_A PRE-mRNA branch site pr 98.7 2.1E-08 7.1E-13 73.1 5.5 49 2-53 37-86 (115)
263 3egn_A RNA-binding protein 40; 98.7 7.9E-09 2.7E-13 78.5 3.3 45 9-53 86-131 (143)
264 2e5j_A Methenyltetrahydrofolat 98.7 2.1E-08 7.1E-13 70.8 4.9 42 12-53 53-95 (97)
265 4f02_A Polyadenylate-binding p 98.7 1.1E-08 3.9E-13 83.1 3.9 51 2-54 132-183 (213)
266 3pgw_S U1-70K; protein-RNA com 98.7 1.8E-08 6.2E-13 90.5 5.4 52 2-53 131-183 (437)
267 1nu4_A U1A RNA binding domain; 98.7 9.8E-09 3.3E-13 72.4 2.8 46 10-55 46-92 (97)
268 1x4a_A Splicing factor, argini 98.7 4.1E-08 1.4E-12 70.8 6.3 45 10-54 56-101 (109)
269 3sde_A Paraspeckle component 1 98.6 2.6E-08 8.8E-13 83.6 5.6 73 12-113 55-128 (261)
270 2la4_A Nuclear and cytoplasmic 98.6 3.7E-08 1.3E-12 70.0 5.6 40 13-52 61-101 (101)
271 2hvz_A Splicing factor, argini 98.6 2.2E-08 7.4E-13 71.2 3.5 48 2-54 29-77 (101)
272 2e5g_A U6 snRNA-specific termi 98.6 8.9E-08 3.1E-12 67.0 6.0 48 4-54 37-84 (94)
273 1x5p_A Negative elongation fac 98.6 7.7E-08 2.6E-12 67.8 5.7 43 12-54 46-89 (97)
274 2i2y_A Fusion protein consists 98.6 5.4E-08 1.9E-12 74.4 5.1 47 2-53 102-149 (150)
275 1x4g_A Nucleolysin TIAR; struc 98.6 7.2E-08 2.5E-12 69.5 5.4 47 2-54 54-101 (109)
276 2d9o_A DNAJ (HSP40) homolog, s 98.6 1.1E-07 3.8E-12 67.2 6.0 42 12-54 51-92 (100)
277 3s6e_A RNA-binding protein 39; 98.6 4.2E-08 1.4E-12 71.1 3.9 45 2-50 46-91 (114)
278 1wg1_A KIAA1579 protein, homol 98.6 5E-08 1.7E-12 67.5 4.0 40 13-52 38-78 (88)
279 2bz2_A Negative elongation fac 98.5 9E-08 3.1E-12 70.4 5.4 41 13-53 71-112 (121)
280 2ad9_A Polypyrimidine tract-bi 98.5 6.8E-08 2.3E-12 70.4 4.5 47 2-54 60-109 (119)
281 2jvo_A Nucleolar protein 3; nu 98.5 1.2E-07 4.2E-12 68.2 5.6 40 15-54 65-105 (108)
282 3smz_A Protein raver-1, ribonu 98.5 9E-08 3.1E-12 81.2 5.5 52 2-54 214-266 (284)
283 2cpj_A Non-POU domain-containi 98.5 9.2E-08 3.2E-12 67.6 4.5 41 14-54 50-91 (99)
284 2cq1_A PTB-like protein L; RRM 98.5 1.2E-07 4.2E-12 67.2 5.1 40 15-54 51-93 (101)
285 2dnq_A RNA-binding protein 4B; 98.5 1.7E-07 5.8E-12 65.0 5.6 40 15-54 42-82 (90)
286 1x4c_A Splicing factor, argini 98.5 8.9E-08 3.1E-12 68.9 4.1 47 2-55 44-96 (108)
287 2dnl_A Cytoplasmic polyadenyla 98.5 8.3E-08 2.8E-12 69.8 3.9 47 3-51 37-87 (114)
288 3r27_A HnRNP L, heterogeneous 98.5 9.6E-08 3.3E-12 67.2 4.1 41 13-53 55-98 (100)
289 3d2w_A TAR DNA-binding protein 98.5 7.5E-08 2.6E-12 66.7 3.4 47 2-54 40-86 (89)
290 2cqh_A IGF-II mRNA-binding pro 98.5 7.1E-08 2.4E-12 67.3 3.3 42 13-54 42-85 (93)
291 1why_A Hypothetical protein ri 98.5 1.5E-07 5E-12 66.3 4.9 40 15-54 53-95 (97)
292 1x4f_A Matrin 3; structural ge 98.5 1.4E-07 4.9E-12 68.0 4.8 41 13-53 60-103 (112)
293 2hzc_A Splicing factor U2AF 65 98.5 2.1E-07 7.2E-12 64.0 5.3 36 13-48 51-86 (87)
294 2diu_A KIAA0430 protein; struc 98.4 1.8E-07 6E-12 64.4 4.5 39 16-54 47-86 (96)
295 2cpd_A Apobec-1 stimulating pr 98.4 1.6E-07 5.4E-12 66.4 4.4 42 13-54 49-91 (99)
296 2kn4_A Immunoglobulin G-bindin 98.4 2E-07 6.8E-12 71.9 4.8 94 1-115 1-104 (158)
297 2xnq_A Nuclear polyadenylated 98.4 2.2E-07 7.6E-12 65.4 4.5 39 14-52 56-95 (97)
298 2ytc_A PRE-mRNA-splicing facto 98.4 3.3E-07 1.1E-11 62.7 5.0 37 14-50 47-85 (85)
299 2cq2_A Hypothetical protein LO 98.4 1.4E-07 4.8E-12 68.1 3.2 40 14-53 62-107 (114)
300 1wf1_A RNA-binding protein RAL 98.4 2.4E-07 8.1E-12 66.8 4.3 39 14-52 61-100 (110)
301 2kvi_A Nuclear polyadenylated 98.4 2.7E-07 9.3E-12 64.8 4.5 41 14-54 44-85 (96)
302 1x4d_A Matrin 3; structural ge 98.4 1.2E-07 4.1E-12 67.3 2.5 46 2-53 45-93 (102)
303 2dgt_A RNA-binding protein 30; 98.4 3.8E-07 1.3E-11 63.4 5.0 40 15-54 44-84 (92)
304 2dgu_A Heterogeneous nuclear r 98.4 3.2E-07 1.1E-11 65.3 4.6 41 15-55 45-86 (103)
305 1wex_A Hypothetical protein (r 98.4 2.2E-07 7.4E-12 66.3 3.6 41 14-54 50-93 (104)
306 1sjr_A Polypyrimidine tract-bi 98.4 4.4E-07 1.5E-11 69.7 5.3 45 13-57 82-129 (164)
307 2dnp_A RNA-binding protein 14; 98.4 4.5E-07 1.5E-11 62.8 4.8 39 15-53 43-82 (90)
308 3dxb_A Thioredoxin N-terminall 98.3 4.7E-07 1.6E-11 73.9 5.1 49 2-50 158-211 (222)
309 2e44_A Insulin-like growth fac 98.3 4.7E-07 1.6E-11 63.5 4.5 48 2-53 44-93 (96)
310 3sde_A Paraspeckle component 1 98.3 1.4E-06 4.7E-11 73.0 7.5 51 2-53 125-180 (261)
311 1whx_A Hypothetical protein ri 98.3 3.9E-07 1.3E-11 65.8 3.4 40 13-52 44-84 (111)
312 1wf0_A TDP-43, TAR DNA-binding 98.3 3.1E-07 1.1E-11 63.3 2.5 48 2-55 34-81 (88)
313 2dnr_A Synaptojanin-1; RRM dom 98.3 7.1E-07 2.4E-11 60.8 4.1 43 2-52 44-86 (91)
314 3beg_B Splicing factor, argini 98.3 7.1E-07 2.4E-11 64.9 4.2 44 2-52 45-94 (115)
315 3zzy_A Polypyrimidine tract-bi 98.2 1.4E-06 4.8E-11 64.3 5.3 45 14-58 64-112 (130)
316 3u1l_A PRE-mRNA-splicing facto 98.2 1.1E-06 3.7E-11 72.1 4.9 41 14-54 178-231 (240)
317 2i2y_A Fusion protein consists 98.1 1.5E-06 5E-11 66.4 3.6 102 4-115 4-107 (150)
318 2e5i_A Heterogeneous nuclear r 98.1 4.1E-06 1.4E-10 61.4 5.7 41 16-56 62-106 (124)
319 1ufw_A Synaptojanin 2; RNP dom 98.0 5.4E-06 1.9E-10 56.8 3.7 41 2-50 53-93 (95)
320 3tht_A Alkylated DNA repair pr 97.3 0.00031 1E-08 60.7 5.3 37 14-50 55-97 (345)
321 1mix_A Talin; focal adhesion, 95.8 0.032 1.1E-06 44.3 8.0 78 77-154 20-111 (206)
322 1owx_A Lupus LA protein, SS-B, 93.1 0.076 2.6E-06 38.2 3.4 34 17-50 57-94 (121)
323 2lea_A Serine/arginine-rich sp 93.0 0.06 2E-06 39.6 2.9 74 17-114 6-80 (135)
324 2dhx_A Poly (ADP-ribose) polym 92.3 0.16 5.4E-06 35.2 4.0 39 16-54 48-86 (104)
325 2l9w_A U4/U6 snRNA-associated- 91.3 0.16 5.5E-06 35.5 3.2 33 17-49 64-97 (117)
326 1wf1_A RNA-binding protein RAL 86.2 0.54 1.8E-05 32.8 3.1 29 85-113 31-60 (110)
327 1rk8_A CG8781-PA, CG8781-PA pr 85.0 0.3 1E-05 37.1 1.3 32 83-114 74-105 (165)
328 3p3d_A Nucleoporin 53; structu 84.8 0.8 2.7E-05 33.2 3.4 38 15-52 62-99 (132)
329 1wey_A Calcipressin 1; structu 82.3 0.98 3.4E-05 31.3 2.9 35 18-52 49-84 (104)
330 2hgn_A Heterogeneous nuclear r 81.9 0.6 2E-05 34.4 1.9 22 85-106 50-71 (139)
331 2lxi_A RNA-binding protein 10; 81.1 1.2 4.1E-05 29.8 3.0 30 84-113 4-34 (91)
332 1sjq_A Polypyrimidine tract-bi 80.4 0.78 2.7E-05 32.0 1.9 31 85-115 20-50 (105)
333 3d2w_A TAR DNA-binding protein 78.1 1.2 4.1E-05 29.7 2.3 31 85-115 15-45 (89)
334 3r27_A HnRNP L, heterogeneous 78.1 1.1 3.6E-05 31.0 2.0 29 85-113 25-53 (100)
335 2lkz_A RNA-binding protein 5; 77.8 0.86 2.9E-05 31.0 1.5 29 85-113 13-41 (95)
336 2voo_A Lupus LA protein; RNA-b 77.7 2.5 8.5E-05 32.9 4.3 31 83-113 111-141 (193)
337 4fxv_A ELAV-like protein 1; RN 77.1 0.58 2E-05 32.1 0.4 33 82-114 20-52 (99)
338 2jwn_A Embryonic polyadenylate 76.8 1.2 4.2E-05 31.6 2.1 31 83-113 38-68 (124)
339 2mss_A Protein (musashi1); RNA 74.1 2.2 7.6E-05 27.0 2.7 30 85-114 3-32 (75)
340 2ad9_A Polypyrimidine tract-bi 73.3 1.6 5.3E-05 31.2 1.9 29 85-113 35-63 (119)
341 4f25_A Polyadenylate-binding p 73.3 1.6 5.6E-05 30.6 2.0 30 84-113 8-37 (115)
342 1iqt_A AUF1, heterogeneous nuc 73.1 2.6 8.9E-05 26.6 2.8 29 85-113 3-31 (75)
343 2wbr_A GW182, gawky, LD47780P; 72.0 1.6 5.4E-05 29.3 1.5 31 85-115 11-41 (89)
344 1wex_A Hypothetical protein (r 71.8 1.7 5.7E-05 30.1 1.7 29 85-113 19-47 (104)
345 1wf0_A TDP-43, TAR DNA-binding 70.9 2 6.9E-05 28.3 1.9 30 85-114 9-38 (88)
346 1s79_A Lupus LA protein; RRM, 70.0 2.1 7.3E-05 29.4 1.9 30 85-114 15-44 (103)
347 2jvr_A Nucleolar protein 3; RN 68.5 3.2 0.00011 29.1 2.6 30 85-114 32-62 (111)
348 3p5t_L Cleavage and polyadenyl 68.0 2.6 8.8E-05 27.9 1.9 29 83-111 3-33 (90)
349 2cq1_A PTB-like protein L; RRM 67.1 1.5 5.2E-05 30.1 0.6 29 85-113 19-47 (101)
350 1ef1_A Moesin; membrane, FERM 66.2 18 0.00063 29.8 7.3 78 77-154 98-195 (294)
351 3ucg_A Polyadenylate-binding p 66.2 3.1 0.00011 27.2 2.1 32 82-113 7-38 (89)
352 1x4d_A Matrin 3; structural ge 66.1 1.1 3.8E-05 31.0 -0.2 31 85-115 19-50 (102)
353 4f7g_A Talin-1; alpha-helix bu 64.9 26 0.00091 27.5 7.8 78 77-154 31-122 (222)
354 1whw_A Hypothetical protein ri 64.9 3.7 0.00013 27.5 2.3 30 85-114 12-41 (99)
355 2dgp_A Bruno-like 4, RNA bindi 64.9 3.9 0.00013 27.9 2.5 31 85-115 17-47 (106)
356 3pgw_S U1-70K; protein-RNA com 64.7 2.2 7.6E-05 37.9 1.4 33 82-114 103-135 (437)
357 2dgt_A RNA-binding protein 30; 64.4 3.5 0.00012 27.3 2.1 29 85-113 14-42 (92)
358 4a8x_A RNA-binding protein wit 63.9 3.4 0.00012 26.9 1.9 30 84-113 7-36 (88)
359 1uaw_A Mouse-musashi-1; RNP-ty 63.7 2.9 9.8E-05 26.5 1.5 30 84-113 3-32 (77)
360 3mdf_A Peptidyl-prolyl CIS-tra 63.6 3.6 0.00012 26.6 2.0 29 85-113 11-39 (85)
361 3s7r_A Heterogeneous nuclear r 62.9 3.3 0.00011 27.0 1.7 29 85-113 15-43 (87)
362 1x4c_A Splicing factor, argini 62.8 3.3 0.00011 28.5 1.7 32 85-116 19-50 (108)
363 2dnp_A RNA-binding protein 14; 61.9 3.8 0.00013 27.0 1.9 29 85-113 13-41 (90)
364 3s8s_A Histone-lysine N-methyl 61.9 2.7 9.3E-05 29.2 1.2 29 85-113 10-38 (110)
365 2m2b_A RNA-binding protein 10; 61.9 4.4 0.00015 29.0 2.3 26 85-110 27-52 (131)
366 1whx_A Hypothetical protein ri 61.5 3.8 0.00013 28.4 1.9 29 85-113 14-42 (111)
367 3md1_A Nuclear and cytoplasmic 61.0 3.6 0.00012 26.5 1.6 29 85-113 5-33 (83)
368 2dnq_A RNA-binding protein 4B; 60.9 4 0.00014 26.9 1.9 28 85-112 12-39 (90)
369 1x5u_A Splicing factor 3B subu 60.7 4.7 0.00016 27.4 2.2 31 85-115 19-49 (105)
370 1x5s_A Cold-inducible RNA-bind 60.7 4.6 0.00016 27.3 2.2 30 85-114 16-45 (102)
371 1x4h_A RNA-binding protein 28; 60.6 4.7 0.00016 27.7 2.2 30 85-114 19-48 (111)
372 2dnm_A SRP46 splicing factor; 60.5 4.3 0.00015 27.5 2.0 30 85-114 17-46 (103)
373 2cph_A RNA binding motif prote 60.5 4.7 0.00016 27.5 2.2 30 85-114 19-48 (107)
374 3bs9_A Nucleolysin TIA-1 isofo 60.5 4.4 0.00015 26.3 2.0 30 84-113 9-38 (87)
375 2cqb_A Peptidyl-prolyl CIS-tra 60.3 5 0.00017 27.1 2.3 30 85-114 16-45 (102)
376 1x4b_A Heterogeneous nuclear r 60.3 4.3 0.00015 28.2 2.0 30 84-113 30-59 (116)
377 2cqi_A Nucleolysin TIAR; RNA r 60.0 4.4 0.00015 27.4 2.0 29 85-113 19-47 (103)
378 2ytc_A PRE-mRNA-splicing facto 60.0 4.3 0.00015 26.3 1.8 29 85-113 16-44 (85)
379 2e5g_A U6 snRNA-specific termi 60.0 3.6 0.00012 27.4 1.5 26 85-110 12-37 (94)
380 2dgu_A Heterogeneous nuclear r 60.0 4.2 0.00014 27.6 1.9 28 85-112 15-42 (103)
381 2div_A TRNA selenocysteine ass 59.9 4.8 0.00017 26.9 2.2 25 85-109 13-37 (99)
382 1why_A Hypothetical protein ri 59.7 4.4 0.00015 27.1 1.9 30 85-114 21-50 (97)
383 1wwh_A Nucleoporin 35, nucleop 59.5 8.5 0.00029 27.3 3.3 36 15-50 59-95 (119)
384 1x4a_A Splicing factor, argini 59.5 4.7 0.00016 27.7 2.1 29 85-113 26-54 (109)
385 2cpf_A RNA binding motif prote 59.4 4.5 0.00015 27.1 1.9 30 84-113 8-37 (98)
386 2e44_A Insulin-like growth fac 59.3 4.3 0.00015 27.0 1.8 27 85-111 19-45 (96)
387 2x1f_A MRNA 3'-END-processing 59.2 5.3 0.00018 26.6 2.3 31 84-114 5-35 (96)
388 1x5t_A Splicing factor 3B subu 59.2 5 0.00017 26.7 2.1 28 84-111 8-35 (96)
389 2dgx_A KIAA0430 protein; RRM d 59.0 5.3 0.00018 26.7 2.2 32 84-115 12-47 (96)
390 2e5j_A Methenyltetrahydrofolat 58.8 4.9 0.00017 26.9 2.0 25 85-109 23-47 (97)
391 2hvz_A Splicing factor, argini 58.7 4.9 0.00017 27.1 2.0 30 84-113 3-32 (101)
392 2dh8_A DAZ-associated protein 58.7 5.2 0.00018 27.2 2.2 29 85-113 20-48 (105)
393 2cqh_A IGF-II mRNA-binding pro 58.5 5.2 0.00018 26.4 2.1 23 85-107 12-34 (93)
394 2cpz_A CUG triplet repeat RNA- 58.3 4.2 0.00014 28.2 1.7 29 85-113 29-57 (115)
395 2la6_A RNA-binding protein FUS 58.2 4.9 0.00017 27.0 1.9 26 85-110 17-42 (99)
396 2ywk_A Putative RNA-binding pr 58.0 5.1 0.00017 26.6 2.0 30 84-113 19-48 (95)
397 2dgv_A HnRNP M, heterogeneous 57.9 5.1 0.00017 26.3 2.0 29 85-113 12-40 (92)
398 2cqg_A TDP-43, TAR DNA-binding 57.9 5.1 0.00017 27.1 2.0 29 85-113 19-47 (103)
399 2cqd_A RNA-binding region cont 57.6 5.2 0.00018 27.8 2.1 29 85-113 21-49 (116)
400 1sjr_A Polypyrimidine tract-bi 57.6 3.4 0.00012 31.2 1.1 29 85-113 50-78 (164)
401 2la4_A Nuclear and cytoplasmic 57.4 5.4 0.00019 26.8 2.1 29 84-112 30-58 (101)
402 3beg_B Splicing factor, argini 57.4 4.2 0.00014 28.4 1.5 30 85-114 20-49 (115)
403 2rs2_A Musashi-1, RNA-binding 57.3 4.9 0.00017 27.7 1.8 30 84-113 28-57 (109)
404 1x4f_A Matrin 3; structural ge 57.2 2.3 7.7E-05 30.0 0.0 29 85-113 29-58 (112)
405 2dnl_A Cytoplasmic polyadenyla 57.2 4 0.00014 28.4 1.4 25 85-109 12-36 (114)
406 3tyt_A Heterogeneous nuclear r 57.0 5.1 0.00017 31.4 2.1 33 84-116 7-40 (205)
407 2dgs_A DAZ-associated protein 56.9 4.4 0.00015 27.2 1.5 29 85-113 14-42 (99)
408 3qij_A Protein 4.1; cytoskelet 56.8 18 0.00062 30.0 5.6 76 79-154 114-201 (296)
409 2kvi_A Nuclear polyadenylated 56.5 5.2 0.00018 26.7 1.8 29 84-112 13-42 (96)
410 1h4r_A Merlin; FERM, neurofibr 56.4 30 0.001 28.8 7.0 77 78-154 119-215 (314)
411 3ulh_A THO complex subunit 4; 56.4 4.7 0.00016 27.5 1.6 29 85-113 33-61 (107)
412 1oo0_B CG8781-PA, drosophila Y 56.2 6.5 0.00022 26.9 2.3 30 85-114 30-59 (110)
413 2cqc_A Arginine/serine-rich sp 56.0 5.6 0.00019 26.3 1.9 29 85-113 19-47 (95)
414 2cq2_A Hypothetical protein LO 56.0 5.9 0.0002 27.9 2.1 29 85-113 29-59 (114)
415 3zzy_A Polypyrimidine tract-bi 55.9 4.8 0.00016 29.1 1.6 29 85-113 32-60 (130)
416 1p1t_A Cleavage stimulation fa 55.8 5.8 0.0002 26.8 2.0 30 84-113 11-40 (104)
417 2cq4_A RNA binding motif prote 55.8 5.2 0.00018 27.7 1.8 32 83-114 27-58 (114)
418 2e5h_A Zinc finger CCHC-type a 55.5 4.5 0.00015 26.8 1.4 29 85-113 20-48 (94)
419 2jvo_A Nucleolar protein 3; nu 55.5 5.7 0.0002 27.4 1.9 29 85-113 35-63 (108)
420 2dnz_A Probable RNA-binding pr 55.3 5.2 0.00018 26.5 1.7 29 85-113 9-37 (95)
421 2fy1_A RNA-binding motif prote 55.2 6 0.0002 27.6 2.0 30 84-113 10-39 (116)
422 2dnh_A Bruno-like 5, RNA bindi 55.2 5.2 0.00018 27.1 1.7 29 85-113 19-47 (105)
423 3ex7_B RNA-binding protein 8A; 55.1 6.5 0.00022 27.7 2.3 30 85-114 26-55 (126)
424 2xnq_A Nuclear polyadenylated 54.9 6.2 0.00021 26.5 2.0 29 85-113 26-55 (97)
425 2xs2_A Deleted in azoospermia- 54.9 6.1 0.00021 26.6 2.0 29 85-113 13-41 (102)
426 2dha_A FLJ20171 protein; RRM d 54.9 6.3 0.00021 28.1 2.1 25 84-108 26-50 (123)
427 1x4g_A Nucleolysin TIAR; struc 54.2 5.9 0.0002 27.2 1.9 31 84-114 28-58 (109)
428 2cq3_A RNA-binding protein 9; 54.1 5.2 0.00018 27.1 1.5 29 85-113 19-47 (103)
429 2err_A Ataxin-2-binding protei 54.1 5.6 0.00019 27.4 1.7 29 85-113 33-61 (109)
430 2do4_A Squamous cell carcinoma 54.0 5.6 0.00019 26.7 1.7 29 85-113 21-49 (100)
431 1p27_B RNA-binding protein 8A; 53.6 6.6 0.00023 26.6 2.0 29 85-113 27-55 (106)
432 2dhg_A TRNA selenocysteine ass 53.5 5.4 0.00018 27.0 1.5 29 85-113 13-42 (104)
433 2e5i_A Heterogeneous nuclear r 53.5 5.7 0.00019 28.4 1.7 29 85-113 29-57 (124)
434 2cpe_A RNA-binding protein EWS 53.0 6.4 0.00022 27.1 1.9 25 85-109 19-43 (113)
435 2ek1_A RNA-binding protein 12; 52.9 5.2 0.00018 26.5 1.3 26 85-110 19-44 (95)
436 2khc_A Testis-specific RNP-typ 52.9 4.7 0.00016 28.1 1.2 29 85-113 44-72 (118)
437 3egn_A RNA-binding protein 40; 52.8 6.9 0.00024 28.4 2.1 27 84-110 48-74 (143)
438 2do0_A HnRNP M, heterogeneous 52.5 6 0.00021 27.3 1.7 28 85-112 19-46 (114)
439 2dgo_A Cytotoxic granule-assoc 52.3 7 0.00024 27.0 2.0 29 85-113 19-47 (115)
440 3lqv_A PRE-mRNA branch site pr 52.1 6.7 0.00023 27.1 1.9 29 85-113 12-40 (115)
441 3ulj_A LIN28B, DNA-binding pro 52.0 5.3 0.00018 26.8 1.2 10 13-22 18-27 (90)
442 2cpj_A Non-POU domain-containi 51.5 5.3 0.00018 26.8 1.2 29 85-113 19-47 (99)
443 3cam_A Cold-shock domain famil 51.3 6.1 0.00021 24.8 1.4 12 13-24 11-22 (67)
444 1c9o_A CSPB, cold-shock protei 51.3 6.1 0.00021 24.7 1.4 12 13-24 11-22 (66)
445 2cpy_A RNA-binding protein 12; 51.2 6.4 0.00022 27.3 1.7 24 85-108 19-42 (114)
446 2ki2_A SS-DNA binding protein 51.2 3.9 0.00013 26.9 0.5 29 85-113 5-33 (90)
447 2kt5_A RNA and export factor-b 50.9 8.2 0.00028 27.1 2.2 29 85-113 39-67 (124)
448 2cqp_A RNA-binding protein 12; 50.8 5.7 0.00019 26.5 1.3 26 85-110 19-44 (98)
449 1fj7_A Nucleolin RBD1, protein 50.3 5.9 0.0002 26.7 1.3 26 85-110 21-46 (101)
450 2cpd_A Apobec-1 stimulating pr 50.2 7.7 0.00026 26.0 1.9 25 85-109 19-45 (99)
451 1wg5_A Heterogeneous nuclear r 50.0 5.4 0.00018 27.2 1.0 25 85-109 19-43 (104)
452 2dnn_A RNA-binding protein 12; 49.7 7.1 0.00024 27.1 1.7 26 83-109 18-43 (109)
453 3a0j_A Cold shock protein; OB- 49.6 6.6 0.00023 25.1 1.4 12 13-24 11-22 (73)
454 2d9p_A Polyadenylate-binding p 49.3 4.7 0.00016 27.3 0.6 29 85-113 19-47 (103)
455 2cjk_A Nuclear polyadenylated 48.7 8 0.00027 28.5 2.0 31 84-114 6-36 (167)
456 1g6p_A Cold shock protein TMCS 48.7 7.1 0.00024 24.4 1.4 12 13-24 10-21 (66)
457 2kxn_B Transformer-2 protein h 48.6 7.2 0.00025 27.9 1.6 29 85-113 50-78 (129)
458 1fjc_A Nucleolin RBD2, protein 48.4 6.6 0.00022 26.1 1.3 27 85-111 20-46 (96)
459 1wi8_A EIF-4B, eukaryotic tran 48.3 6.9 0.00024 26.5 1.4 27 85-112 19-45 (104)
460 1h95_A CSD, Y-box binding prot 48.2 7.1 0.00024 25.4 1.4 12 13-24 18-29 (79)
461 2jrs_A RNA-binding protein 39; 48.2 8 0.00027 26.6 1.7 29 85-113 30-58 (108)
462 2ku7_A MLL1 PHD3-CYP33 RRM chi 48.1 10 0.00035 27.1 2.4 29 85-113 67-95 (140)
463 3ivf_A Talin-1; FERM domain, c 47.8 54 0.0018 28.0 7.3 78 78-155 186-277 (371)
464 2cpx_A Hypothetical protein FL 47.6 6.2 0.00021 27.3 1.1 25 85-109 29-53 (115)
465 2dis_A Unnamed protein product 47.4 8.6 0.00029 26.2 1.8 28 85-112 12-40 (109)
466 1nu4_A U1A RNA binding domain; 46.9 9.5 0.00032 25.3 1.9 27 85-111 12-42 (97)
467 2lmi_A GRSF-1, G-rich sequence 46.0 9.2 0.00032 26.1 1.8 23 85-107 15-37 (107)
468 3n9u_C Cleavage and polyadenyl 45.9 7.6 0.00026 28.9 1.4 32 82-113 56-89 (156)
469 3i2z_B RNA chaperone, negative 45.8 8.3 0.00028 24.5 1.4 12 13-24 15-26 (71)
470 2fc9_A NCL protein; structure 45.8 5.5 0.00019 26.8 0.5 25 85-109 19-43 (101)
471 3md3_A Nuclear and cytoplasmic 45.4 9.5 0.00032 27.9 1.9 29 85-113 4-32 (166)
472 2db1_A Heterogeneous nuclear r 45.2 7.6 0.00026 27.2 1.2 23 85-107 21-43 (118)
473 2k5n_A Putative cold-shock pro 45.1 10 0.00036 24.3 1.8 12 13-24 12-23 (74)
474 2cpi_A CCR4-NOT transcription 45.0 4 0.00014 28.3 -0.3 30 85-114 19-51 (111)
475 1u6f_A Tcubp1, RNA-binding pro 44.9 9.8 0.00033 27.3 1.8 30 84-113 45-74 (139)
476 1qm9_A Polypyrimidine tract-bi 44.5 15 0.0005 28.0 3.0 34 84-117 6-40 (198)
477 2kcm_A Cold shock domain famil 44.3 11 0.00038 24.2 1.8 12 13-24 10-21 (74)
478 3nmr_A Cugbp ELAV-like family 43.9 10 0.00035 28.0 1.9 30 84-113 6-35 (175)
479 1wel_A RNA-binding protein 12; 43.9 7 0.00024 27.6 0.9 26 85-110 29-54 (124)
480 2cq0_A Eukaryotic translation 42.5 5.1 0.00017 27.1 -0.1 29 85-113 19-47 (103)
481 2j8a_A Histone-lysine N-methyl 42.4 10 0.00036 27.5 1.6 31 85-115 6-40 (136)
482 2f3j_A RNA and export factor b 42.2 14 0.00049 28.0 2.5 33 82-114 89-121 (177)
483 3q2s_C Cleavage and polyadenyl 42.0 6.8 0.00023 31.3 0.6 33 81-113 68-102 (229)
484 3u1l_A PRE-mRNA-splicing facto 41.4 12 0.0004 30.2 2.0 29 85-113 138-175 (240)
485 1owx_A Lupus LA protein, SS-B, 41.4 29 0.00099 24.6 3.8 51 85-135 22-76 (121)
486 2yty_A Cold shock domain-conta 41.1 11 0.00037 25.1 1.4 10 15-24 28-37 (88)
487 1h2v_Z 20 kDa nuclear CAP bind 40.5 13 0.00045 27.3 2.0 30 84-113 42-71 (156)
488 1x5o_A RNA binding motif, sing 40.3 7.8 0.00027 26.7 0.6 29 85-113 29-57 (114)
489 2ytx_A Cold shock domain-conta 40.1 11 0.00039 25.5 1.4 11 14-24 27-37 (97)
490 2hgl_A HNRPF protein, heteroge 39.8 9.3 0.00032 27.7 1.0 23 85-107 48-70 (136)
491 2lcw_A RNA-binding protein FUS 46.0 6.1 0.00021 27.4 0.0 28 83-110 9-36 (116)
492 3aqq_A Calcium-regulated heat 39.7 13 0.00044 27.4 1.8 11 14-24 73-83 (147)
493 2i1j_A Moesin; FERM, coiled-co 39.7 63 0.0021 29.7 6.7 77 78-154 102-198 (575)
494 1fxl_A Paraneoplastic encephal 39.0 14 0.00047 27.0 1.9 30 84-113 5-34 (167)
495 1b7f_A Protein (SXL-lethal pro 38.2 14 0.0005 27.0 1.9 30 84-113 6-35 (168)
496 2ytv_A Cold shock domain-conta 38.1 9.6 0.00033 24.8 0.8 11 14-24 17-27 (79)
497 2lss_A Cold shock-like protein 44.0 6.9 0.00023 24.8 0.0 11 14-24 15-25 (70)
498 2adc_A Polypyrimidine tract-bi 37.6 17 0.00057 28.7 2.3 33 85-117 38-71 (229)
499 2hgm_A HNRPF protein, heteroge 37.3 15 0.00051 26.2 1.7 24 84-107 45-68 (126)
500 1x65_A UNR protein; cell-free 37.0 12 0.00042 24.9 1.1 10 15-24 18-27 (89)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=6.5e-27 Score=184.95 Aligned_cols=152 Identities=26% Similarity=0.345 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCH
Q psy633 140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKL 215 (300)
Q Consensus 140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~ 215 (300)
..+|..+.++.|+.|+....+ ++.. ...+.++++.++..|...+.. ++.. .+..+..|.||||+|+..+.
T Consensus 9 ~~Aa~~G~~~~v~~Ll~~Gad-----vn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 9 IEAAENGNKDRVKDLIENGAD-----VNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCCCC-----CCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 458888999999999877654 2222 234567888888888763333 2222 45678889999999999888
Q ss_pred HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
..++++|++ .|+++|.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++||
T Consensus 83 ~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 83 KEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 888888888 899999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCC
Q psy633 296 HSSN 299 (300)
Q Consensus 296 ~~~~ 299 (300)
+++.
T Consensus 161 ~ie~ 164 (169)
T 4gpm_A 161 WLEH 164 (169)
T ss_dssp ----
T ss_pred CcCC
Confidence 9874
No 2
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.90 E-value=4.2e-24 Score=147.65 Aligned_cols=85 Identities=29% Similarity=0.652 Sum_probs=82.3
Q ss_pred hhhHHHHHhhhhcccc--cCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633 75 MEDRFNQACDYLPSLV--KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN 152 (300)
Q Consensus 75 l~~~F~~a~~~v~~~~--~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~ 152 (300)
|++.|++|+.+|++++ ..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++
T Consensus 2 l~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~ 81 (89)
T 1hbk_A 2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVS 81 (89)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5689999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCc
Q psy633 153 EVDAGWE 159 (300)
Q Consensus 153 ~l~~~~~ 159 (300)
++.+.|.
T Consensus 82 ~l~~~~~ 88 (89)
T 1hbk_A 82 EIFPYWQ 88 (89)
T ss_dssp HHCTTTT
T ss_pred HHccccc
Confidence 9999985
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.90 E-value=4.9e-24 Score=168.38 Aligned_cols=120 Identities=32% Similarity=0.429 Sum_probs=106.8
Q ss_pred CccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHH
Q psy633 178 ENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253 (300)
Q Consensus 178 ~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 253 (300)
+..|+..|.. .+..++.. .+..+..|.||||+|+..+...+.++|+. .|++++.+|..|+||||+||..|+.+++
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccCCCCHHHHHHHcCCHHHH
Confidence 5667777876 34444433 46678899999999999888888888888 7999999999999999999999999999
Q ss_pred HHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 254 ~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++||+++.
T Consensus 87 ~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 131 (169)
T 4gpm_A 87 KLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131 (169)
T ss_dssp HHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 99999 9999999999999999999999999999999999999975
No 4
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-24 Score=147.23 Aligned_cols=85 Identities=34% Similarity=0.617 Sum_probs=81.6
Q ss_pred hhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633 75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 75 l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l 154 (300)
|++.|++|+.+|++++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++
T Consensus 1 l~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l 80 (86)
T 1st7_A 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQL 80 (86)
T ss_dssp CHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy633 155 DAGWE 159 (300)
Q Consensus 155 ~~~~~ 159 (300)
.+.|.
T Consensus 81 ~~~~~ 85 (86)
T 1st7_A 81 IAKYS 85 (86)
T ss_dssp HHHHC
T ss_pred hhhhc
Confidence 88773
No 5
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.90 E-value=7.2e-24 Score=145.80 Aligned_cols=85 Identities=31% Similarity=0.546 Sum_probs=81.7
Q ss_pred hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633 74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE 153 (300)
Q Consensus 74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~ 153 (300)
.|++.|++|+.+|+.++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||+++++
T Consensus 3 ~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~ 82 (89)
T 3epy_A 3 ALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKE 82 (89)
T ss_dssp HHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy633 154 VDAGW 158 (300)
Q Consensus 154 l~~~~ 158 (300)
+.+.+
T Consensus 83 l~~ky 87 (89)
T 3epy_A 83 LIEKY 87 (89)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 97654
No 6
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=149.79 Aligned_cols=88 Identities=39% Similarity=0.790 Sum_probs=85.2
Q ss_pred hhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633 73 ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN 152 (300)
Q Consensus 73 ~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~ 152 (300)
+++++.|++|+.+|+.+...++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++|+
T Consensus 6 ~~l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~ 85 (109)
T 2cop_A 6 SGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 85 (109)
T ss_dssp CCSHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCch
Q psy633 153 EVDAGWED 160 (300)
Q Consensus 153 ~l~~~~~~ 160 (300)
++.+.|..
T Consensus 86 ~l~~~~~~ 93 (109)
T 2cop_A 86 KLDPGWNP 93 (109)
T ss_dssp HHCTTCCC
T ss_pred HHhhhhcc
Confidence 99999977
No 7
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=4.7e-23 Score=146.19 Aligned_cols=93 Identities=34% Similarity=0.474 Sum_probs=86.1
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~ 281 (300)
+|+||||+|+..+...++++|+. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 47899999988777777777777 799999999999999999999999999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHcCCC
Q psy633 282 EHTDLIEYLVNSGAH 296 (300)
Q Consensus 282 g~~~iv~~Ll~~ga~ 296 (300)
|+.+++++|+++||+
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999986
No 8
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.88 E-value=2e-23 Score=144.72 Aligned_cols=83 Identities=36% Similarity=0.690 Sum_probs=80.5
Q ss_pred hHHHHHhhhhcccc-cCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633 77 DRFNQACDYLPSLV-KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD 155 (300)
Q Consensus 77 ~~F~~a~~~v~~~~-~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~ 155 (300)
..|++|+.+|++++ ..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++.
T Consensus 12 ~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp STHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc
Q psy633 156 AGWE 159 (300)
Q Consensus 156 ~~~~ 159 (300)
+.|.
T Consensus 92 ~~~~ 95 (96)
T 2lbb_A 92 PSWR 95 (96)
T ss_dssp GGGT
T ss_pred chhc
Confidence 9884
No 9
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=146.95 Aligned_cols=87 Identities=34% Similarity=0.647 Sum_probs=84.3
Q ss_pred hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633 74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE 153 (300)
Q Consensus 74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~ 153 (300)
.++..|++|+.+|+.+...++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++|++
T Consensus 15 ~~~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~YI~lv~~ 94 (116)
T 2cqu_A 15 ASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS 94 (116)
T ss_dssp CCHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCch
Q psy633 154 VDAGWED 160 (300)
Q Consensus 154 l~~~~~~ 160 (300)
+.+.|..
T Consensus 95 l~~~~~~ 101 (116)
T 2cqu_A 95 LSPSLES 101 (116)
T ss_dssp HCSCCCC
T ss_pred Hcccccc
Confidence 9999976
No 10
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.88 E-value=3.6e-23 Score=142.00 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=80.0
Q ss_pred hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD 155 (300)
Q Consensus 76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~ 155 (300)
+..|++|+.+|++++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++.
T Consensus 3 ~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELK 82 (87)
T ss_dssp HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy633 156 AGW 158 (300)
Q Consensus 156 ~~~ 158 (300)
+.|
T Consensus 83 ~~~ 85 (87)
T 2cb8_A 83 KKY 85 (87)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 11
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.87 E-value=3.2e-22 Score=156.36 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.|+....+ ++. ....+.++++.|+. |... +..++.. .+..+..|.||||+|+..+..
T Consensus 11 ~A~~~g~~~~v~~Ll~~~~~-----~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 11 SAAARGDLEQLTSLLQNNVN-----VNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHTCHHHHHHHTTSCCC-----TTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHhCCCC-----ccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 37788889999999876543 211 22345678888888 7763 3333332 355678899999999987777
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC-ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
.++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|.||||+|+..|+.+++++|+++||
T Consensus 84 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 84 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 78888888 799999999999999999999999999999999 8998 69999999999999999999999999999999
Q ss_pred C
Q psy633 296 H 296 (300)
Q Consensus 296 ~ 296 (300)
|
T Consensus 162 d 162 (162)
T 1ihb_A 162 G 162 (162)
T ss_dssp -
T ss_pred C
Confidence 6
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.87 E-value=3.6e-22 Score=169.83 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC--------------------------
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-------------------------- 195 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-------------------------- 195 (300)
++..+.+++++.|+....+ ++. ....+.+++|.|+..|+..+..++..
T Consensus 52 A~~~g~~~~v~~Ll~~ga~-----~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (282)
T 1oy3_D 52 AAILGEASTVEKLYAAGAG-----VLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125 (282)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----SSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------
T ss_pred HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhc
Confidence 6777788888888776543 111 22345677888888777632222211
Q ss_pred -------------------------CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCC
Q psy633 196 -------------------------ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGH 249 (300)
Q Consensus 196 -------------------------~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~ 249 (300)
.+..+..|.||||+|+..+...++++|+. .|++++..+.. |+||||+|+..|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~ 204 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQA 204 (282)
T ss_dssp ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCC
Confidence 23457789999999999877778887777 79999999865 9999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++||+++..
T Consensus 205 ~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 205 ASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254 (282)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence 999999999 99999999999999999999999999999999999999863
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=171.98 Aligned_cols=127 Identities=22% Similarity=0.292 Sum_probs=112.1
Q ss_pred ccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHC
Q psy633 172 QESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR 247 (300)
Q Consensus 172 ~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~ 247 (300)
..+.+++|.|+..|...+..++ .. ....+..|.||+++|+..+...+.++|+. .|++++.+|..|+||||+||..
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHC
Confidence 3456889999999987444333 22 35567889999999999888888888888 7999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
|+.++|++||+ .|+++|.+|..|+||||+|+..|+.++|++|+++|||++.+
T Consensus 163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 99999999999 99999999999999999999999999999999999999863
No 14
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=144.32 Aligned_cols=89 Identities=35% Similarity=0.642 Sum_probs=82.8
Q ss_pred hhhhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHH
Q psy633 72 AENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 147 (300)
Q Consensus 72 ~~~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~y 147 (300)
..+|+..|++|+.+|+.++. .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.|
T Consensus 21 ~~dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~Y 100 (119)
T 3flv_A 21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAY 100 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 46889999999999999875 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCch
Q psy633 148 IALLNEVDAGWED 160 (300)
Q Consensus 148 i~~v~~l~~~~~~ 160 (300)
|++++++++....
T Consensus 101 I~~v~~l~~~~~~ 113 (119)
T 3flv_A 101 VEEMKKIIETMPM 113 (119)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHhhCCC
Confidence 9999999876543
No 15
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.86 E-value=5.5e-23 Score=156.36 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=104.1
Q ss_pred cCCCCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHC
Q psy633 173 ESGSKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDR 247 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~ 247 (300)
...++++.|+..|...+. .++.. .+..+..|.||||+|+. +...++++|.. .|++++.+|.. |+||||+|+..
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~ 88 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPVHDAARE 88 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHHHHHHHc
Confidence 445678888888876333 33322 35567889999999999 77778887777 79999999999 99999999999
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus 89 ~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 89 GFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999 9999999999999999999999999999999999986
No 16
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.86 E-value=7.1e-22 Score=155.82 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+....+ ++. ....+.+++|.|+..|...+.. ++.. .+..+..|.||||+|+..+...
T Consensus 21 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 94 (169)
T 2y1l_E 21 AARAGRDDEVRILMANGAD-----VNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94 (169)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 8888999999998876543 221 1234567788888888763333 3322 3456778899999998887778
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 95 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 95 IVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 8888887 789999999999999999999999999999999 89999999999999999999999999999999876
No 17
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.5e-22 Score=142.22 Aligned_cols=88 Identities=35% Similarity=0.673 Sum_probs=80.8
Q ss_pred hhhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHH
Q psy633 73 ENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148 (300)
Q Consensus 73 ~~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi 148 (300)
.++++.|++|+.++++++. .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||
T Consensus 6 ~~l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI 85 (106)
T 2wh5_A 6 PDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI 85 (106)
T ss_dssp ---CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4577899999999999986 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCch
Q psy633 149 ALLNEVDAGWED 160 (300)
Q Consensus 149 ~~v~~l~~~~~~ 160 (300)
++++++.+.+.+
T Consensus 86 ~~v~~l~~k~~~ 97 (106)
T 2wh5_A 86 TEMKLVAQKVID 97 (106)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999877544
No 18
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.86 E-value=7.7e-22 Score=155.15 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.++..... ++. ....+.+++|.|+..|...+... +.. .+..+..|.||||+|+..+..
T Consensus 9 ~A~~~g~~~~v~~ll~~~~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 9 QLAAQGEMLYLATRIEQENV-----INH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp HHHHTTCHHHHHHHHHHSSC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHcCCC-----cCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 34555566666666544322 111 11233455555655555422222 211 233445555666666554444
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
.++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++++
T Consensus 83 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 83 DIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 44554444 456666666666666666666666666666666 666666666666666666666666666666665544
No 19
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.86 E-value=5.6e-22 Score=140.24 Aligned_cols=84 Identities=35% Similarity=0.563 Sum_probs=79.8
Q ss_pred hhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q psy633 74 NMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIA 149 (300)
Q Consensus 74 ~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~ 149 (300)
.+++.|++|+.+|+.++. .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||+
T Consensus 3 ~~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~ 82 (106)
T 3fp5_A 3 MSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVE 82 (106)
T ss_dssp CCHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 357899999999999974 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q psy633 150 LLNEVDAG 157 (300)
Q Consensus 150 ~v~~l~~~ 157 (300)
+++++++.
T Consensus 83 ~v~~l~~~ 90 (106)
T 3fp5_A 83 KLLEILKK 90 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99999876
No 20
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.86 E-value=4.2e-22 Score=157.40 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.++..... ........+.+++|.|+..|...+...+.+ .+..+..|.||||+|+..+..
T Consensus 8 ~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 8 QLAAQGELDQLKEHLRKGDN-----LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp HHHHTTCHHHHHHHHTTCSG-----GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCcc-----cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 36777888888888876533 111223456678999999988743333322 355677899999999998888
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 83 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 83 DIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 88888888 799999999999999999999999999999999 9999999999999999999999999999999998876
Q ss_pred CC
Q psy633 297 SS 298 (300)
Q Consensus 297 ~~ 298 (300)
+.
T Consensus 161 ~~ 162 (172)
T 3v30_A 161 LF 162 (172)
T ss_dssp HS
T ss_pred Hh
Confidence 54
No 21
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=4.3e-21 Score=143.22 Aligned_cols=98 Identities=27% Similarity=0.313 Sum_probs=88.2
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~ 279 (300)
+..+.|+||+|+..+...++++|.. .+.+++..|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence 4567899999988776667776776 699999999999999999999999999999999 99999999999999999999
Q ss_pred hcCcHHHHHHHHHcCCCCCC
Q psy633 280 AIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ga~~~~ 299 (300)
..|+.+++++|+++|++++.
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~ 101 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTV 101 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTC
T ss_pred HcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999875
No 22
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.85 E-value=3.8e-21 Score=149.07 Aligned_cols=140 Identities=20% Similarity=0.206 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.++....+ . .....+.+++|.|+..|...+... +.. .+..+..|.||||+|+..+...
T Consensus 9 A~~~g~~~~v~~Ll~~g~~-----~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 9 AARAGQDDEVRILMANGAP-----F--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHTCHHHHHHHHHHTCC-----C--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----C--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 6667777778777655433 1 112234455666666555422222 211 2334455666666665555555
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 290 (300)
++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus 82 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 5555555 566666666666666666666666666666666 6666666666666666666666666666655
No 23
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.85 E-value=1.2e-20 Score=147.93 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.++..... . .......+.+++|.|+..|+..+... +.. .+..+..|.||||+|+..+...
T Consensus 15 A~~~g~~~~v~~ll~~~~~----~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 89 (165)
T 3twr_A 15 AAKAGDVETVKKLCTVQSV----N-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89 (165)
T ss_dssp HHHHTCHHHHHHHCCTTTT----T-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHcCCC----C-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH
Confidence 7778888888888764221 0 00111122244444444444321111 111 2223344445555444444444
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+. |+.+++++|+++||
T Consensus 90 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 90 VAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 4444444 444444444445555555555555555555554 455555555555555555433 44455555544443
No 24
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.85 E-value=1.6e-21 Score=154.07 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=107.1
Q ss_pred CCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 175 GSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 175 ~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
.++++.|+..|.. .+..++.. .+..+..|.||||+|+..+...++++|.. .|++++..+..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcccCCCHHHHHHHCCC
Confidence 4567888888876 33344433 34467889999999999888788888877 799999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 82 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 82 TDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp HHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 999999999 9999999999999999999999999999999999999875
No 25
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.85 E-value=1.2e-22 Score=158.23 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=99.6
Q ss_pred cCCCCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCch-HHHHHHHC
Q psy633 173 ESGSKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLN-CLHWACDR 247 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t-~Lh~A~~~ 247 (300)
.+.++++.|+..|...+. .++.. .+..+..|.||||+|+ .+...++++|+. .|++++.+|..|+| |||+|+..
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAARE 88 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHHC
Confidence 345667777777776333 23322 3456778999999987 455556666666 69999999999999 99999999
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 89 ~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 89 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139 (156)
T ss_dssp TCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred CCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence 99999999999 9999999999999999999999999999999999999875
No 26
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=7.6e-21 Score=144.45 Aligned_cols=96 Identities=28% Similarity=0.322 Sum_probs=87.9
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~ 118 (136)
T 2jab_A 41 NAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFD 118 (136)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHH
Confidence 3456678999999998777778888888 799999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcC
Q psy633 277 YAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~g 294 (300)
+|+..|+.+++++|++.|
T Consensus 119 ~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 119 ISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTTCHHHHHHHHHC-
T ss_pred HHHHCCCHHHHHHHHHcC
Confidence 999999999999999987
No 27
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.85 E-value=2.4e-21 Score=154.13 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCH
Q psy633 140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKL 215 (300)
Q Consensus 140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~ 215 (300)
..++..+.++.++.++..... +++ .....+.+++|.|+..|...+..++ .. .+..+..|.||||+|+..+.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~----~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTEN----DLN-QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTS----CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcc----ccc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 456777778888887665321 011 1222345667777777766333222 22 34456667777777777666
Q ss_pred HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
..++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|+
T Consensus 85 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 85 RDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 667777766 677777777777788888887777778887777 777777777777888888777777777888777777
Q ss_pred CCCC
Q psy633 296 HSSN 299 (300)
Q Consensus 296 ~~~~ 299 (300)
+++.
T Consensus 163 ~~~~ 166 (179)
T 3f6q_A 163 NLNR 166 (179)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 7764
No 28
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=4.7e-21 Score=145.71 Aligned_cols=100 Identities=29% Similarity=0.318 Sum_probs=90.8
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 277 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~ 277 (300)
..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence 456789999999988666666777777 699999999999999999999999999999999 999999999999999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCC
Q psy633 278 AKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 278 A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..|+.+++++|+++|++++.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~ 104 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNA 104 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999875
No 29
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.85 E-value=2.8e-21 Score=161.12 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCCCCccCccccce-eeeecccCCc--ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633 174 SGSKENEGQTKGWV-NVSSMINDES--QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250 (300)
Q Consensus 174 ~~~~~~~a~~~g~~-~~~~~~~~~~--~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 250 (300)
+.++++.|+..|.. .+..++.... ..+..+.|+||.|+..+...++++|+. .|++++..|..|+||||+||..|+.
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~ 83 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHT 83 (239)
T ss_dssp --------------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 34567777777765 3333333321 223556788887776555556666666 5778888888888888888888888
Q ss_pred HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 84 ~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 131 (239)
T 1ycs_B 84 EIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131 (239)
T ss_dssp HHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence 88888888 7888888888888888888888888888888888888764
No 30
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.85 E-value=1.3e-21 Score=157.40 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=88.6
Q ss_pred cCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633 173 ESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 248 (300)
.+.+++|.|+..|...+... +.. .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|
T Consensus 34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~ 112 (192)
T 2rfm_A 34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFG 112 (192)
T ss_dssp TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcC
Confidence 34566777777776532222 221 34456667778877777666666666666 57777777777888888888888
Q ss_pred CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 113 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 162 (192)
T 2rfm_A 113 YSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162 (192)
T ss_dssp CHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 8888888887 7888887777788888888888888888888887777764
No 31
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=1.8e-21 Score=143.44 Aligned_cols=99 Identities=27% Similarity=0.352 Sum_probs=91.9
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
.+..|.|+||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence 56789999999988777777777777 799999999999999999999999999999999 9999999999999999999
Q ss_pred HhcCcHHHHHHHHHcCCCCCC
Q psy633 279 KAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+..|+.+++++|+++||+++.
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNA 103 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCc
Confidence 999999999999999999763
No 32
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.84 E-value=8.6e-22 Score=156.78 Aligned_cols=123 Identities=26% Similarity=0.307 Sum_probs=107.3
Q ss_pred CCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 175 GSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 175 ~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
.++++.|+..|.. .+..++.. .+..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence 3457778888876 33333332 35578889999999999888888888888 799999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 85 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 133 (179)
T 3f6q_A 85 RDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133 (179)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred HHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence 999999999 9999999999999999999999999999999999999875
No 33
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=2e-21 Score=144.94 Aligned_cols=98 Identities=34% Similarity=0.463 Sum_probs=91.1
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..+..|.||||+|+..+...+.++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 29 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~ 106 (126)
T 1n0r_A 29 NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLH 106 (126)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred CCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence 4456788999999998777778888887 799999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+|+..|+.+++++|+++|||
T Consensus 107 ~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 107 LAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999996
No 34
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.84 E-value=1.9e-21 Score=163.42 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-ccc----CCcccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIN----DESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~----~~~~~~~~~~t~l~~a~~~~~~ 216 (300)
++..+.+++++.|+....+ ++. ....+.+++|.|+..|...+.. ++. ..+..+..|.||||+|+..+..
T Consensus 64 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 137 (253)
T 1yyh_A 64 AARYSRSDAAKRLLEASAD-----ANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137 (253)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence 5666778888888766433 111 2234567889999888763333 332 2345677899999999887777
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus 138 ~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 138 GMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215 (253)
T ss_dssp SHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 77777777 799999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 216 ~~~ 218 (253)
T 1yyh_A 216 RDI 218 (253)
T ss_dssp TTC
T ss_pred ccc
Confidence 875
No 35
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=161.62 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhh--cccccccCCCCCccCccccce--eeeecccC---CcccCcCcchHHHHHHhC
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEI--NWDESQESGSKENEGQTKGWV--NVSSMIND---ESQLDDNEKNIYEWAKEG 213 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~g~~--~~~~~~~~---~~~~~~~~~t~l~~a~~~ 213 (300)
.++..+.+++|+.|+........... .........++++.++..+.. .+..++.. .+..+..|.||||+|+..
T Consensus 17 ~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~ 96 (269)
T 4b93_B 17 RAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH 96 (269)
T ss_dssp HHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 47888899999999876543211100 111122334567777766653 33444433 456788999999999998
Q ss_pred CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633 214 KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293 (300)
Q Consensus 214 ~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 293 (300)
+...++++|+. .+++++..+..|.||||+|+..++.+++++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++
T Consensus 97 g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 174 (269)
T 4b93_B 97 GRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174 (269)
T ss_dssp TCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred CcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 88888888888 799999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy633 294 GAHSSN 299 (300)
Q Consensus 294 ga~~~~ 299 (300)
|++++.
T Consensus 175 gadvn~ 180 (269)
T 4b93_B 175 GASINA 180 (269)
T ss_dssp TCCTTC
T ss_pred CCCCCc
Confidence 999985
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.84 E-value=4.2e-21 Score=158.30 Aligned_cols=153 Identities=18% Similarity=0.104 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC-----CcccCcCcchHHHHHHhCCH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND-----ESQLDDNEKNIYEWAKEGKL 215 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~-----~~~~~~~~~t~l~~a~~~~~ 215 (300)
++..+.+++++.|+..... .++.......+.++++.|+..|...+.. ++.. .+..+..|.||||+|+..+.
T Consensus 43 A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~ 119 (228)
T 2dzn_A 43 SVSFQAHEITSFLLSKMEN---VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119 (228)
T ss_dssp HHHTTCHHHHHHHHHTCTT---CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHhcccc---ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC
Confidence 5666777888888776522 1122213345668899999988873333 3322 24567789999999999888
Q ss_pred HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHH-Hc
Q psy633 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NS 293 (300)
Q Consensus 216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ 293 (300)
..++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..|+.+++++|+ +.
T Consensus 120 ~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ 197 (228)
T 2dzn_A 120 FEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197 (228)
T ss_dssp HHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 888888888 799999999999999999999999999999999 88 999999999999999999999999999999 89
Q ss_pred CCCCCC
Q psy633 294 GAHSSN 299 (300)
Q Consensus 294 ga~~~~ 299 (300)
|++++.
T Consensus 198 ga~~~~ 203 (228)
T 2dzn_A 198 GAEYDL 203 (228)
T ss_dssp CCCSCC
T ss_pred CCCCCc
Confidence 999875
No 37
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.84 E-value=4e-21 Score=158.83 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+...+ .. .+..+..|.||||+|+..+...
T Consensus 47 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 120 (231)
T 3aji_A 47 ACSAGHTEIVEFLLQLGVP-----VND-KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----SCC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCcHHHHHHHHHhCCC-----CCC-cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 6677778888888765433 111 223456789999998887433333 22 3456778999999999988888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|.. .|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 121 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 198 (231)
T 3aji_A 121 IAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198 (231)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 8888888 799999999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred CC
Q psy633 298 SN 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 199 ~~ 200 (231)
T 3aji_A 199 YI 200 (231)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 38
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.84 E-value=3.7e-21 Score=151.71 Aligned_cols=122 Identities=26% Similarity=0.339 Sum_probs=106.1
Q ss_pred CCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633 176 SKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251 (300)
Q Consensus 176 ~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 251 (300)
++++.|+..|...+. .++.. .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~ 94 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLE 94 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 346677777776333 33332 34567889999999999888888888888 79999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 95 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 141 (169)
T 2y1l_E 95 IVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141 (169)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999 9999999999999999999999999999999999999875
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.84 E-value=7e-21 Score=156.51 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-cc----CCcccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IN----DESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~----~~~~~~~~~~t~l~~a~~~~~~ 216 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+... +. ..+..+..|.||||+|+..+..
T Consensus 32 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 105 (223)
T 2f8y_A 32 AARYSRSDAAKRLLEASAD-----ANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105 (223)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHcCCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcH
Confidence 5556666777766654332 111 12234456666666666522222 21 1233455666777766665555
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 106 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 183 (223)
T 2f8y_A 106 GMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183 (223)
T ss_dssp HHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 55555555 566677666667777777777777777777776 6777777777777777777777777777777777776
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 184 ~~~ 186 (223)
T 2f8y_A 184 RDI 186 (223)
T ss_dssp TTC
T ss_pred Ccc
Confidence 654
No 40
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.84 E-value=6e-21 Score=145.01 Aligned_cols=100 Identities=20% Similarity=0.122 Sum_probs=93.1
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC-CCcHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD-GDYGL 275 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~-g~TpL 275 (300)
+..+..|.||||+|+..+...++++|+. .|++++.+|..|+||||+|+. |+.+++++|++ .|++++.+|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHH
Confidence 5567789999999998777777887777 799999999999999999999 99999999999 99999999999 99999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 276 DYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+|+..|+.+++++|+++|++++.
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~ 106 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDV 106 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCc
Confidence 999999999999999999999875
No 41
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=3e-20 Score=141.11 Aligned_cols=98 Identities=32% Similarity=0.365 Sum_probs=89.9
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~ 279 (300)
...+.|+||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence 4567899999988777677777777 699999999999999999999999999999999 99999999999999999999
Q ss_pred hcCcHHHHHHHHHcCCCCCC
Q psy633 280 AIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 280 ~~g~~~iv~~Ll~~ga~~~~ 299 (300)
..|+.+++++|+++|++++.
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~ 108 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNA 108 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTC
T ss_pred HcCCHHHHHHHHHcCCCCcC
Confidence 99999999999999999875
No 42
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.83 E-value=3.7e-21 Score=163.57 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+....... .++ .....+.+++|.|+..|+..+.. ++.. .+..+..|.||||+|+..+...
T Consensus 16 A~~~g~~~~v~~Ll~~g~~~~--~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~ 92 (282)
T 1oy3_D 16 AVIHQHEPFLDFLLGFSAGHE--YLD-LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT 92 (282)
T ss_dssp HHHTTCHHHHHHHHHHHTTSG--GGG-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred HHHcCCHHHHHHHHhcCCCcc--ccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Confidence 666777788877765322200 011 12335678899999999874433 3332 3456788999999999988888
Q ss_pred HHHHHhhcCCCC-----------------------------------------------ccccCcCCchHHHHHHHCCCH
Q psy633 218 LVKQLTKLKDFN-----------------------------------------------INQLDENGLNCLHWACDRGHL 250 (300)
Q Consensus 218 v~~ll~~~~~~~-----------------------------------------------~~~~d~~g~t~Lh~A~~~g~~ 250 (300)
++++|.. .+.+ ++..+..|+||||+|+..|+.
T Consensus 93 ~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 171 (282)
T 1oy3_D 93 CACVLLQ-PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171 (282)
T ss_dssp HHHHHSS-SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred hhHhhhc-cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH
Confidence 8888877 5543 677888999999999999999
Q ss_pred HHHHHHHhhcCCCccccCCC-CCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 251 KVVQHLIEKCGADVNVTDSD-GDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 251 ~~v~~Ll~~~g~~~~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
+++++|++ .|++++.++.. |+||||+|+..|+.+++++|+++|++++.+
T Consensus 172 ~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~ 221 (282)
T 1oy3_D 172 EMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221 (282)
T ss_dssp HHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 99999999 99999999854 999999999999999999999999999863
No 43
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.83 E-value=1.2e-20 Score=156.83 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-c-------CCcccCcCcchHHHHHHhC
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-N-------DESQLDDNEKNIYEWAKEG 213 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~-------~~~~~~~~~~t~l~~a~~~ 213 (300)
++..+.+++++.|+....+ +.. ....+.++++.|+..|...+...+ . ..+..+..|.||||+|+..
T Consensus 53 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~ 126 (241)
T 1k1a_A 53 AVITTLPSVVRLLVTAGAS-----PMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----ccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence 5666677888887765433 111 123456789999988886333322 2 2345677899999999987
Q ss_pred CHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633 214 KLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292 (300)
Q Consensus 214 ~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 292 (300)
+...++++|.. .|++++..+ ..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 127 ~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 127 ECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 77778888887 799999988 789999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy633 293 SGAHSSN 299 (300)
Q Consensus 293 ~ga~~~~ 299 (300)
+|++++.
T Consensus 205 ~ga~~~~ 211 (241)
T 1k1a_A 205 SGADSSL 211 (241)
T ss_dssp TTCCTTC
T ss_pred cCCCCCC
Confidence 9999875
No 44
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.83 E-value=1.6e-20 Score=155.82 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC----CcccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND----ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~----~~~~~~~~~t~l~~a~~~~~~ 216 (300)
++..+.+++++.|...... ++ .....+.++++.|+..|...+... +.. .+..+..|.||||+|+..+..
T Consensus 51 A~~~~~~~~v~~Ll~~g~~-----~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 124 (237)
T 3b7b_A 51 AAENNHLEAVKYLIKAGAL-----VD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCC-----CC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHhCCHHHHHHHHhCCCC-----CC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence 5666778888888876543 11 122345678999999888743333 322 344677899999999998888
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 125 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 125 DLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence 88888888 799999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 203 ~~~ 205 (237)
T 3b7b_A 203 VTL 205 (237)
T ss_dssp TTC
T ss_pred CCc
Confidence 875
No 45
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.82 E-value=9.4e-21 Score=162.69 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.|+....+ ++.. ...+.+++|.|+..|+..+..++ .. .+..+..|.||||+|+..+...
T Consensus 47 A~~~g~~~~v~~Ll~~g~~-----~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~ 120 (299)
T 1s70_B 47 ACSSGDTEEVLRLLERGAD-----INYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120 (299)
T ss_dssp HHHHTCHHHHHHHHHHCCC-----TTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----Cccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence 7778888888888765433 2222 23456789999999987443333 22 3456778999999999877777
Q ss_pred HHHHHhhcCCCCccccCc------------------------------------------------------------CC
Q psy633 218 LVKQLTKLKDFNINQLDE------------------------------------------------------------NG 237 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~------------------------------------------------------------~g 237 (300)
++++|.. .|++++..+. .|
T Consensus 121 ~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 199 (299)
T 1s70_B 121 IAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199 (299)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred HHHHHHh-CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence 8888887 7888776553 47
Q ss_pred chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~ 260 (299)
T 1s70_B 200 GTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence 788999999999999999999 9999999999999999999999999999999999999875
No 46
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=159.61 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cCC--cccCcCcchHHHHHHhCCHHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-NDE--SQLDDNEKNIYEWAKEGKLDML 218 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~--~~~~~~~~t~l~~a~~~~~~~v 218 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+...+ ... ...+..|.||||+|+..+...+
T Consensus 43 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~ 116 (261)
T 2xai_A 43 ACLGGHLSCVKILLKHGAQ-----VNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC 116 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHH
Confidence 6777888888888776443 111 223456789999999887443333 221 1234568999999999888888
Q ss_pred HHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 219 ~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
+++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|+++|. +..|+||||+|+..|+.+++++|+++|||++
T Consensus 117 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 117 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQ 193 (261)
T ss_dssp HHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH-HTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHH-cCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 888888 799999999999999999999999999999999 9999996 8899999999999999999999999999998
Q ss_pred C
Q psy633 299 N 299 (300)
Q Consensus 299 ~ 299 (300)
.
T Consensus 194 ~ 194 (261)
T 2xai_A 194 A 194 (261)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.82 E-value=2.2e-21 Score=161.11 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---------CcccCcCcchHHHHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---------ESQLDDNEKNIYEWAK 211 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---------~~~~~~~~~t~l~~a~ 211 (300)
++..+.+++++.|+....+ ++. ....+.+++|.|+..|+..+..+ +.. .+..+..|.||||+|+
T Consensus 52 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~ 125 (236)
T 1ikn_D 52 AVITNQPEIAEALLGAGCD-----PEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125 (236)
T ss_dssp HHHTTCHHHHHCCCSCCCC-----SCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH
Confidence 6777788999999877544 111 22355678999999888733333 222 2446678999999999
Q ss_pred hCCHHHHHHHHhhcCCCCccccCc-CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633 212 EGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 212 ~~~~~~v~~ll~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 290 (300)
..+...++++|+. .|++++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus 126 ~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L 203 (236)
T 1ikn_D 126 IHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203 (236)
T ss_dssp HTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred HcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence 9888888888887 7999999998 89999999999999999999999 9999999999999999999999999999999
Q ss_pred HHcCCCCC
Q psy633 291 VNSGAHSS 298 (300)
Q Consensus 291 l~~ga~~~ 298 (300)
+++||++.
T Consensus 204 l~~ga~~~ 211 (236)
T 1ikn_D 204 GQLTLENL 211 (236)
T ss_dssp HTTSCGGG
T ss_pred HHcchhhh
Confidence 99999754
No 48
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.82 E-value=6e-21 Score=149.08 Aligned_cols=119 Identities=23% Similarity=0.352 Sum_probs=101.3
Q ss_pred CCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633 176 SKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251 (300)
Q Consensus 176 ~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 251 (300)
++++.|+..|.. .+..++.. .+..+..|.||||+|+. +...++++|.. .|++++.+|..|+||||+|+..|+.+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~ 84 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLD 84 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 346677777766 33333332 34567889999999999 66667777777 69999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 85 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 129 (162)
T 1ihb_A 85 TLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129 (162)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence 9999999 99999999999999999999999999999999999984
No 49
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.82 E-value=1.7e-20 Score=155.10 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.++..... ........+.++++.|+..|...+.. ++.. .+..+..|.||||+|+..+..
T Consensus 12 ~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 86 (231)
T 3aji_A 12 NLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86 (231)
T ss_dssp HHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Confidence 36777778888877654322 11223345678899999999874333 3332 355677899999999988777
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.. .|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 87 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 87 EIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 88888888 799999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 165 ~~~ 167 (231)
T 3aji_A 165 TNI 167 (231)
T ss_dssp SCC
T ss_pred ccc
Confidence 875
No 50
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.82 E-value=7.1e-21 Score=159.92 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHH
Q psy633 143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDML 218 (300)
Q Consensus 143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v 218 (300)
.....+++++.|+..... +.......+.+++|.|+..|...+.. ++.. .+..+..|.||||+|+..+...+
T Consensus 31 ~~~~~~~~v~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 105 (253)
T 1yyh_A 31 EEEDAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105 (253)
T ss_dssp --------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred hcCCChHHHHHHHHccCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 345577778777765433 22223456678899999999874333 3332 45567889999999998777777
Q ss_pred HHHHhhcCCC-CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 219 VKQLTKLKDF-NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 219 ~~ll~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
+++|.. .+. +++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 106 v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 183 (253)
T 1yyh_A 106 FQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183 (253)
T ss_dssp HHHHHH-STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 777777 454 899999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred CC
Q psy633 298 SN 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 184 ~~ 185 (253)
T 1yyh_A 184 DM 185 (253)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 51
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.82 E-value=1.6e-20 Score=155.40 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCccccceeeeecccC-C--------cccCcCcchHHHHHH
Q psy633 142 EAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E--------SQLDDNEKNIYEWAK 211 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~--------~~~~~~~~t~l~~a~ 211 (300)
++..+.++.++.|+.. ..+ ++. ....+.+++|.|+..|+..+...+.+ . ...+..|.||||+|+
T Consensus 10 A~~~g~~~~v~~Ll~~~g~~-----~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~ 83 (232)
T 2rfa_A 10 AAKENDVQALSKLLKFEGCE-----VHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV 83 (232)
T ss_dssp HHHTTCHHHHHHHHTTTCSC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHhcCCC-----ccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH
Confidence 6777788888888775 322 111 23456678999999998743333322 1 345668999999999
Q ss_pred hCCHHHHHHHHhhcCCCCccccCc-------------CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 212 EGKLDMLVKQLTKLKDFNINQLDE-------------NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 212 ~~~~~~v~~ll~~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
..+...++++|.. .|++++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 84 ~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 84 INQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred HcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence 9888888888888 7999988765 79999999999999999999999 9999999999999999999
Q ss_pred HhcCcHHHH----HHHHHcCCCCC
Q psy633 279 KAIEHTDLI----EYLVNSGAHSS 298 (300)
Q Consensus 279 ~~~g~~~iv----~~Ll~~ga~~~ 298 (300)
+..|+.+++ ++|+++|++++
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred HHcCChHHHHHHHHHHHhcCCchh
Confidence 999999988 99999999873
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.82 E-value=3.7e-21 Score=154.80 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.|+....+ ++. ....+.+++|.|+..|...+...+.+ .+..+..|.||||+|+..+...
T Consensus 42 A~~~g~~~~v~~Ll~~~~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 115 (192)
T 2rfm_A 42 ACMLGMENAIDKLVENFDK-----LED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115 (192)
T ss_dssp HHHHTCGGGHHHHHHHHCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHhccc-----ccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence 5555566666666543222 111 22346678999999998744333322 4556788999999999877778
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 294 (300)
++++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 116 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 116 MSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 8888888 799999999999999999999999999999999 99999999999999999999999999999999875
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.82 E-value=4.1e-21 Score=150.96 Aligned_cols=125 Identities=23% Similarity=0.336 Sum_probs=110.1
Q ss_pred cCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633 173 ESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 248 (300)
.+.+++|.|+..|... +..++.. .+..+..|.||||+|+..+...++++|.. .|++++..+..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcC
Confidence 3467789999999873 3333322 45577889999999999888888888888 79999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 81 YTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp CHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999 9999999999999999999999999999999999999875
No 54
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.82 E-value=2.4e-20 Score=150.85 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.++..... +++. ....+.+++|.|+..|...+... +.. .+..+..|.||||+|+..+...
T Consensus 12 A~~~g~~~~v~~ll~~~~~----~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTY----QVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTC----CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCC----CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 5666667777777655431 1111 12245567888888777633333 322 3445667788888887766666
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCc-----HHHHHHHH
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEH-----TDLIEYLV 291 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~-----~~iv~~Ll 291 (300)
++++|....+.+++..+..|.||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..+. .+++++|+
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll 165 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH-HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence 66666632677888888888888888888888888888888 66 8888888888888888888776 78888888
Q ss_pred HcCCCCCC
Q psy633 292 NSGAHSSN 299 (300)
Q Consensus 292 ~~ga~~~~ 299 (300)
++|++++.
T Consensus 166 ~~ga~~~~ 173 (201)
T 3hra_A 166 ENGADQSI 173 (201)
T ss_dssp HTTCCTTC
T ss_pred HCCCCCCc
Confidence 88888765
No 55
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=4.3e-20 Score=154.50 Aligned_cols=118 Identities=23% Similarity=0.232 Sum_probs=100.4
Q ss_pred ccCccccce-eeeecccCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHH
Q psy633 179 NEGQTKGWV-NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257 (300)
Q Consensus 179 ~~a~~~g~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 257 (300)
..+...|+. .+..........+..|.||||+|+..+...++++|+. +++++.+|..|+||||+||..|+.++|++|+
T Consensus 20 l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 97 (244)
T 3ui2_A 20 LIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97 (244)
T ss_dssp EEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 344455554 2333333344556789999999999888888888877 8899999999999999999999999999999
Q ss_pred hhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 258 EKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 258 ~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+ .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.
T Consensus 98 ~-~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 139 (244)
T 3ui2_A 98 E-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139 (244)
T ss_dssp H-TTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred H-cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 9 999999999 8899999999999999999999999999975
No 56
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.81 E-value=1.6e-20 Score=169.86 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=107.0
Q ss_pred cCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633 173 ESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 248 (300)
.+.++++.|+..|+..+..++.. .+..+..|.||||+|+..+...+.++|.. .|++++..|..|+||||+|+..|
T Consensus 244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g 322 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYG 322 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSS
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcC
Confidence 45577888888887744433322 34567789999999988777777777777 69999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+.++|++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++||+++.
T Consensus 323 ~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 323 NIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp CSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred cHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence 9999999999 9999999999999999999999999999999999999875
No 57
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.81 E-value=2.7e-20 Score=158.14 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhh----cccccccCCCCCccCccccceeeee-cccC----CcccCcCcchHHHHHHh
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEI----NWDESQESGSKENEGQTKGWVNVSS-MIND----ESQLDDNEKNIYEWAKE 212 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~----~~~~~~~~~t~l~~a~~ 212 (300)
++..+.+++++.|.....+...... .......+.++++.|+..|+..+.. ++.. .+..+..|.||||+|+.
T Consensus 112 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~ 191 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 5556667777777665433110000 0001334567899999988873333 3322 35567889999999988
Q ss_pred CCH----HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHH
Q psy633 213 GKL----DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288 (300)
Q Consensus 213 ~~~----~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~ 288 (300)
.+. ..+.++|.. .|++++.+|..|.||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.++++
T Consensus 192 ~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~ 270 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270 (285)
T ss_dssp CSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence 666 788888888 899999999999999999999999999999998679999999999999999999999999999
Q ss_pred HHHHcCCCCCCC
Q psy633 289 YLVNSGAHSSNT 300 (300)
Q Consensus 289 ~Ll~~ga~~~~~ 300 (300)
+|+++||+++..
T Consensus 271 ~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 271 LLCKRGASTDCG 282 (285)
T ss_dssp HHHHHSSCSCCS
T ss_pred HHHHcCCCCCcc
Confidence 999999999863
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=158.69 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeee-eccc----CCcccCcCcchHHHHHH----
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVS-SMIN----DESQLDDNEKNIYEWAK---- 211 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~-~~~~----~~~~~~~~~~t~l~~a~---- 211 (300)
.++..++++.++.+.....+ ..++. .+..+.+++|.|+..|...+. .++. ..+..+..|.||||+|+
T Consensus 82 ~a~~~~~~~~~~~l~~~~~~---~~~n~-~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 82 PELVRRHLVTFRAMSARLLD---YVVNI-ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp HHHHHHHHHHHHHHCHHHHH---HHHTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHHh---hcCcC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 46777788777777543221 11222 223455677777777776322 2222 23345566667777666
Q ss_pred -hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633 212 -EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 212 -~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 290 (300)
..+...++++|.. .|.+++..+..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 3334444444444 466666666667777777777777777777776 6777777777777777777777777777777
Q ss_pred HH-cCCCCCC
Q psy633 291 VN-SGAHSSN 299 (300)
Q Consensus 291 l~-~ga~~~~ 299 (300)
++ .|++++.
T Consensus 236 l~~~gad~~~ 245 (276)
T 4hbd_A 236 LAVPSCDISL 245 (276)
T ss_dssp HTSTTCCTTC
T ss_pred HhcCCCCCcC
Confidence 76 6766654
No 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.81 E-value=1.7e-19 Score=139.89 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.++.. .. .+++. ....+.+++|. +..|.. .+..++.. .+..+..|.||||+|+..+...
T Consensus 9 A~~~g~~~~v~~ll~~-~~---~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR-EL---VHPDA-LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHTCHHHHHHHHHT-TC---CCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHh-hC---cCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 6777778888887755 21 01111 12345677888 777776 33333322 3556778999999999988888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 293 (300)
++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 83 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 83 TLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888 799999999999999999999999999999999 7 99999999999999999999999999999874
No 60
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.81 E-value=2.3e-20 Score=150.96 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-----CCcccCcCcchHHHHHHhCCHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-----DESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-----~~~~~~~~~~t~l~~a~~~~~~ 216 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+...+. ..+..+..|.||||+|+..+..
T Consensus 46 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 119 (201)
T 3hra_A 46 AVHNNDIEIAKALIDRGAD-----INL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119 (201)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCH
Confidence 6777788899888876544 111 2234567899999998874433332 2456778899999999987777
Q ss_pred HHHHHHhhcCC-CCccccCcCCchHHHHHHHCCC-----HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633 217 MLVKQLTKLKD-FNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 217 ~v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 290 (300)
.++++|.. .+ ++++.+|..|+||||+|+..+. .+++++|++ .|++++.+|..|+||||+|+..|+.+++++|
T Consensus 120 ~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 120 DNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHH-HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH-cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 77777777 45 9999999999999999999998 999999999 9999999999999999999999999999999
Q ss_pred HHcC
Q psy633 291 VNSG 294 (300)
Q Consensus 291 l~~g 294 (300)
+++|
T Consensus 198 l~~G 201 (201)
T 3hra_A 198 AQYN 201 (201)
T ss_dssp HTCC
T ss_pred HhcC
Confidence 9987
No 61
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.81 E-value=3e-20 Score=152.72 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+..... .+. .....+.++++.|+..|...+...+ .. .+..+..|.||||+|+..+...
T Consensus 65 A~~~~~~~~v~~Ll~~~~~----~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 139 (223)
T 2f8y_A 65 AVSADAQGVFQILIRNRAT----DLD-ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 139 (223)
T ss_dssp HHHTTCHHHHHHHHHBTTS----CTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC----Ccc-cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH
Confidence 5666677788777765431 011 1223456788999988887333333 22 3556788999999999888888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|.. .|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus 140 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 140 AAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 8888888 799999999999999999999999999999999 99999999999999999999999999999999999976
Q ss_pred C
Q psy633 298 S 298 (300)
Q Consensus 298 ~ 298 (300)
+
T Consensus 218 ~ 218 (223)
T 2f8y_A 218 S 218 (223)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.81 E-value=7.9e-20 Score=146.00 Aligned_cols=99 Identities=26% Similarity=0.321 Sum_probs=91.5
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHH
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLD 276 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~ 276 (300)
..+..|.||||+|+..+...++++|+. +.+++..|..|+||||+|+..|+.+++++|++ .|+++|.+| ..|+||||
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHH
Confidence 346688999999998877777787777 88999999999999999999999999999999 999999998 89999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+..|+.+++++|+++|++++.
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~ 138 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEV 138 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTC
T ss_pred HHHhcCcHHHHHHHHHcCCCCcC
Confidence 99999999999999999999875
No 63
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.81 E-value=9.2e-21 Score=167.53 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=46.3
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCC-----ccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN-----INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~-----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
.+..|.||||+|+..+...++++|+. .|++ ++..|..|+||||+|+..|+.++|++|++ .|++++.+|..|+|
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t 246 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV 246 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence 34444455554444444444444443 3444 44444445555555555555555555554 45555555555555
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCC
Q psy633 274 GLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 274 pL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
|||+|+..|+.+++++|+++|++
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhChHHHHHHHHHcCCc
Confidence 55555555555555555554443
No 64
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.81 E-value=4.7e-20 Score=153.10 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.++...... ...++. ....+.+++|.|+..|...+..+ +.. .+..+..|.||||+|+..+...
T Consensus 15 A~~~g~~~~v~~Ll~~~~~~-~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 92 (236)
T 1ikn_D 15 AIIHEEKALTMEVIRQVKGD-LAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA 92 (236)
T ss_dssp HHHTTCSSSSSCCCC------CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHcCChhHHHHHHHHhhcc-HHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 45555555666655543220 001111 12345688999999998744333 332 3556788999999999877777
Q ss_pred HHHHHhhcCCCC------ccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHH
Q psy633 218 LVKQLTKLKDFN------INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 218 v~~ll~~~~~~~------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~L 290 (300)
++++|.. .+.+ ++..+..|+||||+|+..|+.+++++|++ .|++++.++. .|+||||+|+..|+.+++++|
T Consensus 93 ~v~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 170 (236)
T 1ikn_D 93 SVGVLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170 (236)
T ss_dssp HHHHHHH-STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh-cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777777 5654 57788899999999999999999999999 9999999997 999999999999999999999
Q ss_pred HHcCCCCCC
Q psy633 291 VNSGAHSSN 299 (300)
Q Consensus 291 l~~ga~~~~ 299 (300)
+++||+++.
T Consensus 171 l~~ga~~~~ 179 (236)
T 1ikn_D 171 LKCGADVNR 179 (236)
T ss_dssp HTTTCCSCC
T ss_pred HHcCCCCCc
Confidence 999999875
No 65
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.81 E-value=4.1e-20 Score=152.35 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccCC-----cc-cCcCcchHHHHHHhCC
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MINDE-----SQ-LDDNEKNIYEWAKEGK 214 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~~-----~~-~~~~~~t~l~~a~~~~ 214 (300)
+++.+.++.++.++..... ........+.+++|.|+..|...+.. ++... .. .+..|.||||+|+..+
T Consensus 9 A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~ 83 (228)
T 2dzn_A 9 ACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83 (228)
T ss_dssp HHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence 5666677777777655432 12223445678899999999873333 33221 22 5678999999998877
Q ss_pred HHHHHHHHhhcCC--CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633 215 LDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292 (300)
Q Consensus 215 ~~~v~~ll~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 292 (300)
...+.++|.. .| .+++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 84 NLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp CHHHHHHHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 7777777777 66 8899999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cC-CCCCC
Q psy633 293 SG-AHSSN 299 (300)
Q Consensus 293 ~g-a~~~~ 299 (300)
.| ++++.
T Consensus 162 ~g~~~~~~ 169 (228)
T 2dzn_A 162 LGKSAVNW 169 (228)
T ss_dssp TTCCCSCC
T ss_pred cCcccccC
Confidence 99 88875
No 66
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1e-19 Score=167.48 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=88.8
Q ss_pred cCcCcchHHHHHHh---CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 199 LDDNEKNIYEWAKE---GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 199 ~~~~~~t~l~~a~~---~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
.+..|.||||+|+. .+...++++|+. .|+++|.+|..|+||||+||..|+.++|++||+ .|++++.+|..|+|||
T Consensus 167 ~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl 244 (497)
T 3lvq_E 167 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETAL 244 (497)
T ss_dssp SCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHH
T ss_pred cccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHH
Confidence 36789999999954 777777887777 799999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 276 DYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+|+..|+.+++++|+++||+++.
T Consensus 245 ~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 245 DIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCC
Confidence 999999999999999999999875
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=153.58 Aligned_cols=101 Identities=23% Similarity=0.222 Sum_probs=92.6
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGL 275 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL 275 (300)
+..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.++ ..|+|||
T Consensus 48 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL 125 (229)
T 2vge_A 48 SQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAF 125 (229)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCCTG
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHH
Confidence 4456789999999999888888888888 799999999999999999999999999999999 999999997 5999999
Q ss_pred HHH--HhcCcHHHHHHHHHcCCCCCC
Q psy633 276 DYA--KAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 276 ~~A--~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+| +..|+.+++++|+++|++++.
T Consensus 126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 126 EKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp GGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcChHHHHHHHHHcCCCccc
Confidence 999 999999999999999999875
No 68
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=8.3e-20 Score=150.31 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=62.4
Q ss_pred CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhc-CCCccccCCCCCcHHHHH
Q psy633 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-GADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-g~~~~~~d~~g~TpL~~A 278 (300)
+..|.|+||+|+..+...++++|+. .|++++.+|..|+||||+||..|+.+++++|++ . |++++.+|..|+||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT-QPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTT-STTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHc-CCCCCccccCCCCCCHHHHH
Confidence 4455666666665444444444444 466666666666666666666666666666666 5 666666666666666666
Q ss_pred HhcCcHHHHHHHHHcCCCCCC
Q psy633 279 KAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+..|+.+++++|+++||+++.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~ 168 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDL 168 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCC
T ss_pred HHcCCHHHHHHHHHcCCCCcc
Confidence 666666666666666666654
No 69
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=9.4e-20 Score=155.33 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=90.7
Q ss_pred cCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 199 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
.+..|.||||+|+.. +...++++|+. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.|||
T Consensus 165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL 242 (278)
T 1dcq_A 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPL 242 (278)
T ss_dssp CSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred cccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHH
Confidence 356799999999886 67777887777 699999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCCC
Q psy633 276 DYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 276 ~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
|+|+..|+.+++++|+++|++..
T Consensus 243 ~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 243 DIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999753
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.81 E-value=1.2e-20 Score=147.92 Aligned_cols=122 Identities=25% Similarity=0.285 Sum_probs=104.7
Q ss_pred CCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633 176 SKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250 (300)
Q Consensus 176 ~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 250 (300)
++++.|+..|.. .+..++.. ....+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~ 88 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHY 88 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHcCcH
Confidence 345666666665 33333332 34456778899999999888888888888 7999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 89 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 89 EVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136 (165)
T ss_dssp HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 99999999 9999999999999999999999999999999999999875
No 71
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.81 E-value=2.7e-21 Score=161.23 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+..+.++.++....+ ++. .....++++.|+..|...+ ..++.. .+..+..|.||||+|+..++..
T Consensus 12 a~~~~~~~~~~~ll~~g~~-----~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~ 84 (239)
T 1ycs_B 12 GKRTNLRKTGSERIAHGMR-----VKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE 84 (239)
T ss_dssp --------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHH
T ss_pred hhhhhhHHHHHHHhccCCC-----ccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 5566677777777766544 111 1233466888888888733 333333 4556888999999999877777
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC-cHHHHH--HhcCcHHHHHHHHHcC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYA--KAIEHTDLIEYLVNSG 294 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~~g 294 (300)
++++|+. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.++..|. ||||+| +..|+.+++++|+++|
T Consensus 85 ~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 85 IVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 8888887 799999999999999999999999999999999 9999999998777 999999 7889999999999999
Q ss_pred CCCCC
Q psy633 295 AHSSN 299 (300)
Q Consensus 295 a~~~~ 299 (300)
++++.
T Consensus 163 a~~~~ 167 (239)
T 1ycs_B 163 EKMGI 167 (239)
T ss_dssp HHTTT
T ss_pred hcccc
Confidence 98764
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=149.67 Aligned_cols=100 Identities=28% Similarity=0.208 Sum_probs=90.2
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 277 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~ 277 (300)
..+..+.|+||+|+..+...++++|+. .|++++..|..|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHC 93 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHH
Confidence 445678899999887666666666666 599999999999999999999999999999999 999999999999999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCC
Q psy633 278 AKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 278 A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..|+.+++++|+++|++++.
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~~~ 115 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAIFA 115 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCccc
Confidence 9999999999999999999875
No 73
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=155.94 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHH
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLD 216 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~ 216 (300)
.++..+.++.++.|+....+ ++. ....+.+++|.|+..|...+.. ++.. .+..+..|.||||+|+..+..
T Consensus 9 ~A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (261)
T 2xai_A 9 EAAIHGHQLSLRNLISQGWA-----VNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82 (261)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-----SSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHCCCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 37788888999888776433 221 2234668899999999874333 3322 455678899999999987777
Q ss_pred HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
.++++|.+ .|++++. +..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 83 ~~v~~Ll~-~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 159 (261)
T 2xai_A 83 DCVNLLLQ-HGASVQP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159 (261)
T ss_dssp HHHHHHHH-TTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 88888888 7998875 4559999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 160 ~~~ 162 (261)
T 2xai_A 160 VNQ 162 (261)
T ss_dssp TTC
T ss_pred CCC
Confidence 873
No 74
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.80 E-value=9.6e-20 Score=151.08 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+...+ .. .+..+..|.||||+|+..+...
T Consensus 18 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 91 (237)
T 3b7b_A 18 AAEAGHVDICHMLVQAGAN-----IDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91 (237)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----TTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCcHHHHHHHHHcCCC-----cCc-cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence 6777888888888776443 111 123456789999999987443333 32 3456778999999999888878
Q ss_pred HHHHHhhcCC-CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 218 LVKQLTKLKD-FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 218 v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
++++|.. .+ .+++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 92 ~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 169 (237)
T 3b7b_A 92 VVQYLLS-NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169 (237)
T ss_dssp HHHHHHT-TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred HHHHHHh-CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 8888877 45 8999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCC
Q psy633 297 SSN 299 (300)
Q Consensus 297 ~~~ 299 (300)
++.
T Consensus 170 ~~~ 172 (237)
T 3b7b_A 170 LHA 172 (237)
T ss_dssp TTC
T ss_pred CCC
Confidence 875
No 75
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.80 E-value=6.2e-20 Score=151.84 Aligned_cols=124 Identities=17% Similarity=0.137 Sum_probs=104.9
Q ss_pred CCCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCc-----cccCcCCchHHHH
Q psy633 174 SGSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNI-----NQLDENGLNCLHW 243 (300)
Q Consensus 174 ~~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~-----~~~d~~g~t~Lh~ 243 (300)
+.+++|.|+..|.. .+..++.. .+..+..|.||||+|+..+...++++|.. .++++ +..|..|+||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccccccccCCCCcCHHHH
Confidence 34668888888876 33334332 35568889999999998877777777777 57776 6677899999999
Q ss_pred HHHCCCHHHHHHHHhhcCCCccccCC-------------CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 244 ACDRGHLKVVQHLIEKCGADVNVTDS-------------DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 244 A~~~g~~~~v~~Ll~~~g~~~~~~d~-------------~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
|+..|+.+++++|++ .|++++..+. .|.||||+|+..|+.+++++|+++|++++.
T Consensus 82 A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 82 AVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149 (232)
T ss_dssp HHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 999999999999999 9999999876 799999999999999999999999999875
No 76
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.80 E-value=4.6e-20 Score=157.79 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cCC--cccCcCcchHHHHHHhCCHHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-NDE--SQLDDNEKNIYEWAKEGKLDML 218 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~--~~~~~~~~t~l~~a~~~~~~~v 218 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|...+..++ ... ...+..|.||||+|+..+...+
T Consensus 99 A~~~g~~~~v~~Ll~~ga~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 172 (285)
T 3d9h_A 99 ACLGGHLSCVKILLKHGAQ-----VNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC 172 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----SSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHH
T ss_pred HHHCCcHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 6666778888888765433 111 223456789999998887433333 221 1234568999999998777778
Q ss_pred HHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 219 ~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
+++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++. |..|+||||+|+..|+.+++++|+++|++++
T Consensus 173 v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 173 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ 249 (285)
T ss_dssp HHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 888887 799999999999999999999999999999999 9999995 8899999999999999999999999999987
Q ss_pred C
Q psy633 299 N 299 (300)
Q Consensus 299 ~ 299 (300)
.
T Consensus 250 ~ 250 (285)
T 3d9h_A 250 A 250 (285)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=158.87 Aligned_cols=99 Identities=25% Similarity=0.306 Sum_probs=92.1
Q ss_pred CcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 200 DDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 200 ~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..+.||||+|+.. +...+.++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||
T Consensus 208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~ 285 (351)
T 3utm_A 208 PQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALH 285 (351)
T ss_dssp TTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHH
Confidence 45678999999887 66788888888 899999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
+|+..|+.+++++|+++||+++..
T Consensus 286 ~A~~~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 286 RAALAGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHcCcHHHHHHHHHcCCCCCCc
Confidence 999999999999999999998863
No 78
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=156.64 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhcCCCc-hhhhhhhcccccccCCCCCccCc-----cccce-eeeeccc---CCcccCcCcchHHHHHH
Q psy633 142 EAMSKYIALLNEVDAGWE-DKEQEEINWDESQESGSKENEGQ-----TKGWV-NVSSMIN---DESQLDDNEKNIYEWAK 211 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~a~-----~~g~~-~~~~~~~---~~~~~~~~~~t~l~~a~ 211 (300)
++..+.+++++.|+.... + ++ .....+.++++.++ ..+.. .+..++. .....+..|.||||+|+
T Consensus 118 A~~~g~~~~v~~Ll~~g~~~-----~~-~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~ 191 (276)
T 4hbd_A 118 SVSHANFPVVQQLLDSGVCK-----VD-KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV 191 (276)
T ss_dssp HHHTTCHHHHHHHHHTSCCC-----TT-CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCc-----CC-CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 677778888888877654 2 11 12234556677766 33433 2222222 23445677999999999
Q ss_pred hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 212 ~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 291 (300)
..+...++++|+. .|++++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 192 ~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 192 SHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9888888888888 899999999999999999999999999999998579999999999999999999999999999999
Q ss_pred HcC
Q psy633 292 NSG 294 (300)
Q Consensus 292 ~~g 294 (300)
+++
T Consensus 271 ~~~ 273 (276)
T 4hbd_A 271 SRM 273 (276)
T ss_dssp HHC
T ss_pred hcc
Confidence 864
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.80 E-value=6.5e-20 Score=142.03 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=100.8
Q ss_pred CccCcccccee-eeecccC--CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHH
Q psy633 178 ENEGQTKGWVN-VSSMIND--ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254 (300)
Q Consensus 178 ~~~a~~~g~~~-~~~~~~~--~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~ 254 (300)
++.|+..|... +..++.. ....+..|.||||+|+..+...++++|.. .|++++..+..|+||||+|+..|+.++++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 84 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVE 84 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcChHHHHH
Confidence 44555555542 2222222 12246779999999998777777888877 79999999999999999999999999999
Q ss_pred HHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 255 ~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 85 ~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 85 VLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp HHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 9999 9999999999999999999999999999999999999875
No 80
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=151.83 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=73.5
Q ss_pred cCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633 173 ESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 248 (300)
.+.+++|.|+..|... +..++.. .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|
T Consensus 58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSG 136 (285)
T ss_dssp CSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcC
Confidence 3445566666666542 2222221 23445566666666666555555555555 56666666666666666666666
Q ss_pred CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+.+++++|++ .|++++..+ .|.||||+|+..|+.+++++|++.|++++.
T Consensus 137 ~~~~v~~Ll~-~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 185 (285)
T 3d9h_A 137 SWDCVNLLLQ-HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDH 185 (285)
T ss_dssp CHHHHHHHHH-TTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHH-CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 6666666666 666665433 366666666666666666666666666553
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.80 E-value=7.6e-20 Score=142.24 Aligned_cols=99 Identities=18% Similarity=0.092 Sum_probs=89.0
Q ss_pred ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc-HHH
Q psy633 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLD 276 (300)
Q Consensus 198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T-pL~ 276 (300)
..+..+.|+||+|+..+...++++|+. .|++++..|..|+||||+|+ .|+.+++++|++ .|++++.+|..|+| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHH
Confidence 345678999999988777777777777 69999999999999999996 999999999999 99999999999999 999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+..|+.+++++|+++|++++.
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~ 106 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDV 106 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSC
T ss_pred HHHHCCCHHHHHHHHHcCCCCcc
Confidence 99999999999999999999875
No 82
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.79 E-value=3.7e-19 Score=132.58 Aligned_cols=96 Identities=33% Similarity=0.467 Sum_probs=87.7
Q ss_pred CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281 (300)
Q Consensus 202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~ 281 (300)
+|.||||.|+..+...++++|.. .+.+++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHc
Confidence 47899999988666666666666 599999999999999999999999999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCC
Q psy633 282 EHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 282 g~~~iv~~Ll~~ga~~~~ 299 (300)
|+.+++++|+++|++++.
T Consensus 79 ~~~~~~~~Ll~~g~~~~~ 96 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNA 96 (126)
T ss_dssp TCHHHHHHHHHTTCCTTC
T ss_pred ChHHHHHHHHHcCCCCcc
Confidence 999999999999999875
No 83
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.79 E-value=3.5e-20 Score=161.70 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCH---
Q psy633 143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKL--- 215 (300)
Q Consensus 143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~--- 215 (300)
+.....++++.+.....+ ++......+.+++|.|+..|+..+..+ +.. .+..+..|.||||+|+..++
T Consensus 105 ~~~~~~~~~~~l~~~g~d-----vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~ 179 (327)
T 1sw6_A 105 FDSLLQEVNDAFPNTQLN-----LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179 (327)
T ss_dssp HHHHHHHHHHHCTTSCCC-----SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred HHhhHHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence 344444555555544333 333234567789999999998744433 332 45678889999999999776
Q ss_pred -HHHHHHHhhcCCCCccccCcCCchHHHHHHH----CCCHHHHHHHHhhcCC----------------------------
Q psy633 216 -DMLVKQLTKLKDFNINQLDENGLNCLHWACD----RGHLKVVQHLIEKCGA---------------------------- 262 (300)
Q Consensus 216 -~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~g~---------------------------- 262 (300)
..+..+|.. ...+++.+|..|+||||+|+. .|+.+++++|++ .++
T Consensus 180 ~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~-~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 180 SGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp TTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHHHGGGCCEEEC--------------
T ss_pred HHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH-HHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 444444444 346799999999999999999 999999999998 643
Q ss_pred -----------------CccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 263 -----------------DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 263 -----------------~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
++|.+|..|+||||+|+..|+.++|++|+++|||++..
T Consensus 258 g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp --CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred CCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 58889999999999999999999999999999999863
No 84
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.79 E-value=9.4e-20 Score=159.36 Aligned_cols=124 Identities=26% Similarity=0.346 Sum_probs=63.8
Q ss_pred CCCCccCccccceeeee-ccc----CCcccCcCcchHHHHHHh----CCHHHHHHHHhhcCCCCccccCcCCchHHHHHH
Q psy633 175 GSKENEGQTKGWVNVSS-MIN----DESQLDDNEKNIYEWAKE----GKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC 245 (300)
Q Consensus 175 ~~~~~~a~~~g~~~~~~-~~~----~~~~~~~~~~t~l~~a~~----~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~ 245 (300)
.+++|.|+..|+..+.. ++. ..+..+..|.|+++.++. ++.+.+.++|+. .|++++.+|..|+||||+|+
T Consensus 169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHH
Confidence 34555555555542222 221 123344445555543321 233445555555 45555555555555555555
Q ss_pred HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 246 ~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
..|+.+++++|+...|+++|.+|..|+||||+|+..|+.++|++|+++|||++.
T Consensus 248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 555555555555523555555555555555555555555555555555555543
No 85
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.79 E-value=1.5e-19 Score=140.25 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=98.9
Q ss_pred CCccCccccce-eeeeccc----CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633 177 KENEGQTKGWV-NVSSMIN----DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251 (300)
Q Consensus 177 ~~~~a~~~g~~-~~~~~~~----~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 251 (300)
+++.|+..|.. .+..++. ..+..+..|.||||+ +..+...++++|.. .|++++.+|..|+||||+|+..|+.+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 35556666655 2222322 235567889999999 66666666777777 69999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
++++|++ .|++++.+|..|+||||+|+..|+.+++++|++. ++++.
T Consensus 83 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 83 TLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp HHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred HHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 9999999 9999999999999999999999999999999998 88765
No 86
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.79 E-value=1e-19 Score=161.57 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-cc------CCcccCcCcchHHHHHHhCC
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IN------DESQLDDNEKNIYEWAKEGK 214 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~------~~~~~~~~~~t~l~~a~~~~ 214 (300)
++..+.+++++.|+....+ ++. ....+.++++.|+..|+..+..+ +. ..+..+..|.||||+|+..+
T Consensus 173 A~~~g~~~iv~~Ll~~ga~-----~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 173 AVLARRRRLVAYLMKAGAD-----PTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----SCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred HHHcChHHHHHHHHHCCCC-----Ccc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence 6777778888888765433 111 12234456666776666533222 22 22344566667776666544
Q ss_pred ---HHHHHHHHhhcCCCCccc--------cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633 215 ---LDMLVKQLTKLKDFNINQ--------LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 283 (300)
Q Consensus 215 ---~~~v~~ll~~~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~ 283 (300)
...++++|.. .|++++. .|..|+||||+|+..|+.++|++|++..|++++.+|..|+||||+|+..|+
T Consensus 247 ~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 247 GRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325 (373)
T ss_dssp STTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CcchHHHHHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence 5555555555 4666654 445666777777777777777777762336677777677777777777777
Q ss_pred HHHHHHHHHcCCCCCC
Q psy633 284 TDLIEYLVNSGAHSSN 299 (300)
Q Consensus 284 ~~iv~~Ll~~ga~~~~ 299 (300)
.++|++|+++||+++.
T Consensus 326 ~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 326 IEVVMYLIQQGASVEA 341 (373)
T ss_dssp HHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHcCCCccC
Confidence 7777777777766654
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.79 E-value=3e-20 Score=148.95 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-----eeeecccC---CcccCcCcchHHHHHHh
Q psy633 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-----NVSSMIND---ESQLDDNEKNIYEWAKE 212 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-----~~~~~~~~---~~~~~~~~~t~l~~a~~ 212 (300)
.+++.+.++.+..+..... +...+..+.+++|.|+..|.. .+..++.. .+..+..|+||||+|+.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~-------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGY-------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSS-------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCc-------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 3566666666665543221 112223467889999888853 23333333 45677889999998876
Q ss_pred CCH------HHHHHHHhhcCCCCccccCcCCc-hHHHHHHHCC-----CHHHHHHHHhhcCCCccccCCCCCcHHHHHHh
Q psy633 213 GKL------DMLVKQLTKLKDFNINQLDENGL-NCLHWACDRG-----HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280 (300)
Q Consensus 213 ~~~------~~v~~ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~ 280 (300)
.+. ..++++|+. .|+++|.+|..|+ ||||+|+..+ +.+++++|++..|++++.+|..|+||||+|+.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HCTTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred cCCcchhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 543 456777777 7999999999998 9999999854 35688888875799999999999999999999
Q ss_pred cCcHHHHHHHHHcCC
Q psy633 281 IEHTDLIEYLVNSGA 295 (300)
Q Consensus 281 ~g~~~iv~~Ll~~ga 295 (300)
.|+.++|++|+++..
T Consensus 164 ~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 164 CQKPIALKMMEDYIK 178 (186)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999987543
No 88
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=3.9e-19 Score=129.93 Aligned_cols=92 Identities=32% Similarity=0.375 Sum_probs=82.0
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
...+..|.|+||+|+..+...++++|+. .|++++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHH
Confidence 5567889999999988666667777777 699999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHH
Q psy633 277 YAKAIEHTDLIEYL 290 (300)
Q Consensus 277 ~A~~~g~~~iv~~L 290 (300)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 89
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.79 E-value=4.4e-20 Score=156.69 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=102.4
Q ss_pred cCCCCCccCccccceeeeecc-cC---CcccCc--------------CcchHHHHHHhCCHHHHHHHHhhc--CCCCccc
Q psy633 173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLDD--------------NEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQ 232 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~--------------~~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~ 232 (300)
.+.+++|.|+..|+..+..++ .. .+..+. .|.||||+|+..+...++++|+.. .|++++.
T Consensus 100 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~ 179 (273)
T 2pnn_A 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179 (273)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee
Confidence 566889999999887433333 22 233333 699999999987777777777663 4899999
Q ss_pred cCcCCchHHHHHHHCCC---------HHHHHHHHhhcCCCcc-------ccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-
Q psy633 233 LDENGLNCLHWACDRGH---------LKVVQHLIEKCGADVN-------VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA- 295 (300)
Q Consensus 233 ~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~g~~~~-------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga- 295 (300)
+|..|+||||+|+..|+ .+++++|++ .|++++ .+|..|+||||+|+..|+.+++++|+++||
T Consensus 180 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 99999999999999998 899999999 999997 489999999999999999999999999999
Q ss_pred CCCC
Q psy633 296 HSSN 299 (300)
Q Consensus 296 ~~~~ 299 (300)
|++.
T Consensus 259 dp~~ 262 (273)
T 2pnn_A 259 EPEC 262 (273)
T ss_dssp ----
T ss_pred Cchh
Confidence 6653
No 90
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.78 E-value=6.8e-20 Score=154.00 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=106.7
Q ss_pred cccCCCCCccCccc---cceeeeecccC-C---c-----------ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccc
Q psy633 171 SQESGSKENEGQTK---GWVNVSSMIND-E---S-----------QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ 232 (300)
Q Consensus 171 ~~~~~~~~~~a~~~---g~~~~~~~~~~-~---~-----------~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~ 232 (300)
...+.+++|.|+.. |+..+..++.+ . + ..+..|.||||+|+..+...++++|+. .|++++.
T Consensus 40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~ 118 (256)
T 2etb_A 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHL 118 (256)
T ss_dssp TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCc
Confidence 44567889999988 87633333322 1 1 123679999999999888888888888 7999999
Q ss_pred cCcC-------------CchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHh--cCcHH-------HHH
Q psy633 233 LDEN-------------GLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKA--IEHTD-------LIE 288 (300)
Q Consensus 233 ~d~~-------------g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~--~g~~~-------iv~ 288 (300)
.+.. |+||||+|+..|+.+++++|++. .|+++|.+|..|+||||+|+. .++.+ +++
T Consensus 119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~ 198 (256)
T 2etb_A 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198 (256)
T ss_dssp CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHH
Confidence 9886 99999999999999999999985 699999999999999999999 88888 999
Q ss_pred HHHHcCCCC
Q psy633 289 YLVNSGAHS 297 (300)
Q Consensus 289 ~Ll~~ga~~ 297 (300)
+|+++||++
T Consensus 199 ~Ll~~ga~~ 207 (256)
T 2etb_A 199 GLLQMGARL 207 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHcCCCc
Confidence 999999987
No 91
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=150.92 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=94.8
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++..|..|.||||
T Consensus 52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~g~t~L~ 129 (351)
T 3utm_A 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLH 129 (351)
T ss_dssp CCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHH
Confidence 4456789999999999888888888888 799999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+..|+.+++++|+++|++++.
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcc
Confidence 99999999999999999999875
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.78 E-value=2.2e-20 Score=153.74 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=96.0
Q ss_pred CCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633 175 GSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250 (300)
Q Consensus 175 ~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 250 (300)
.+++|.|+..|... +..++.. .+..+..|.||||+|+..+...++++|+...|++++.+|..|+||||+|+..|+.
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~ 153 (222)
T 3ehr_A 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153 (222)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCH
T ss_pred ccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCH
Confidence 45566666666652 2222222 3456788999999999988888999888823999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+++++|++ .|++++.+|..|.||||+|+..|+.++++.|++.|++.++
T Consensus 154 ~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 154 DIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred HHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 99999999 9999999999999999999999999999999999998764
No 93
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.78 E-value=6.7e-20 Score=156.82 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+....+ ++.. .+.+++|.|+..|+..+..+ +.. .+..+..|.||||+|+..+...
T Consensus 38 A~~~g~~~~v~~Ll~~g~~-----~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGAL-----KNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGG-----GSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCC-----CCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 5666777777777765433 1111 24566777777776633322 221 2344556677777776666666
Q ss_pred HHHHHhhcCCCCccccCcCC-chHHHHHHH--------------------------------CCCHHHHHHHHhhcCCCc
Q psy633 218 LVKQLTKLKDFNINQLDENG-LNCLHWACD--------------------------------RGHLKVVQHLIEKCGADV 264 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g-~t~Lh~A~~--------------------------------~g~~~~v~~Ll~~~g~~~ 264 (300)
++++|.. .|++++..+..| .||||+|+. .|+.+++++|++ .|+++
T Consensus 110 ~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~ 187 (285)
T 3kea_A 110 TVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD-YMTST 187 (285)
T ss_dssp HHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH-HHHHT
T ss_pred HHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH-cCCCC
Confidence 6666665 466666666655 455555554 455555555555 45555
Q ss_pred cccCCCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 265 NVTDSDGDYG-LDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 265 ~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+.+|..|+|| ||+|+..|+.+++++|+++||+++.
T Consensus 188 n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223 (285)
T ss_dssp CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 5555555554 5555555555555555555555543
No 94
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.78 E-value=1.1e-19 Score=152.95 Aligned_cols=126 Identities=19% Similarity=0.134 Sum_probs=105.4
Q ss_pred ccCCCCCccCc---cccceeeeecccC---------------CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc
Q psy633 172 QESGSKENEGQ---TKGWVNVSSMIND---------------ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL 233 (300)
Q Consensus 172 ~~~~~~~~~a~---~~g~~~~~~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~ 233 (300)
..+.+++|.|+ ..|+..+...+.+ ....+..|.||||+|+..+...++++|+. .|++++..
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~ 122 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQ 122 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCcc
Confidence 45678899776 6677633333322 12334589999999999888888888888 89999999
Q ss_pred C--------------cCCchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHhcCc---------HHHHH
Q psy633 234 D--------------ENGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH---------TDLIE 288 (300)
Q Consensus 234 d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~~g~---------~~iv~ 288 (300)
+ ..|+||||+|+..|+.+++++|++. .|++++.+|..|+||||+|+..++ .++++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~ 202 (260)
T 3jxi_A 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202 (260)
T ss_dssp CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence 8 5799999999999999999999984 689999999999999999998887 79999
Q ss_pred HHHHcCCCCC
Q psy633 289 YLVNSGAHSS 298 (300)
Q Consensus 289 ~Ll~~ga~~~ 298 (300)
+|+++||+++
T Consensus 203 ~Ll~~ga~~~ 212 (260)
T 3jxi_A 203 LLLIKCAKLF 212 (260)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhCcccc
Confidence 9999999873
No 95
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.78 E-value=1.5e-19 Score=159.73 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=90.5
Q ss_pred cCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC-----ccccCCCC
Q psy633 199 LDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-----VNVTDSDG 271 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~-----~~~~d~~g 271 (300)
.+..|.||||+|+..+ ...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++ +|.+|..|
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g 211 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQG 211 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTC
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCC
Confidence 5567899999999888 7788888887 699999999999999999999999999999999 8988 99999999
Q ss_pred CcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 272 DYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 272 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+||||+|+..|+.++|++|+++||+++.
T Consensus 212 ~t~L~~A~~~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 212 NSHLHWAILINWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999875
No 96
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.78 E-value=4.2e-19 Score=150.73 Aligned_cols=151 Identities=18% Similarity=0.251 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.++.++.|+....+ ++......+.+++|.|+..|...+... +.. .+..+..|.||||+|+..+...
T Consensus 12 A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 86 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 5566667777777655433 222333345566777777776533322 222 2344566777777777666566
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc----------CCCCCcHHHHHHhcCcHHHH
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT----------DSDGDYGLDYAKAIEHTDLI 287 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~----------d~~g~TpL~~A~~~g~~~iv 287 (300)
++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.. +..|.||||+|+..|+.+++
T Consensus 87 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 87 LLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp HHHHHHH-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHH-cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 6666666 577777777777777777777777777777777 77777666 56677777777777777777
Q ss_pred HHHHHc-CCCCCC
Q psy633 288 EYLVNS-GAHSSN 299 (300)
Q Consensus 288 ~~Ll~~-ga~~~~ 299 (300)
++|++. |++++.
T Consensus 165 ~~Ll~~~~~~~~~ 177 (285)
T 1wdy_A 165 KILLDEMGADVNA 177 (285)
T ss_dssp HHHHHTSCCCTTC
T ss_pred HHHHHhcCCCCCc
Confidence 777765 766653
No 97
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.77 E-value=2e-18 Score=148.12 Aligned_cols=99 Identities=28% Similarity=0.413 Sum_probs=79.4
Q ss_pred cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633 199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A 278 (300)
.+..+.|+|++|+..+...++++|+. .|++++..|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A 113 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAA 113 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHH
Confidence 34567788888776444444444444 488888888888899999999999999999988 8888888888899999999
Q ss_pred HhcCcHHHHHHHHHcCCCCCC
Q psy633 279 KAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 279 ~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+..|+.+++++|+++|++++.
T Consensus 114 ~~~g~~~~v~~Ll~~g~~~~~ 134 (299)
T 1s70_B 114 ASCGYLDIAEYLISQGAHVGA 134 (299)
T ss_dssp HHHTCHHHHHHHHHTTCCTTC
T ss_pred HHcCCHHHHHHHHhCCCCCCC
Confidence 999999999999988888764
No 98
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.77 E-value=3.2e-19 Score=161.39 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|...... . ......+.++++.|+..|...+...+.+ .+..+..|.||||+|+..++..
T Consensus 186 A~~~~~~~~v~~Ll~~g~~-----~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 186 AVHHNNLDIVKLLLPRGGS-----P-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp HHHTTCHHHHHHHGGGTCC-----S-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCC-----C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 4555566666666554332 0 1112234567888888887633333222 3456778899999999988888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
++++|.. .+++++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++|++|+++|+++
T Consensus 260 ~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 337 (437)
T 1n11_A 260 MVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337 (437)
T ss_dssp HHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred HHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 8888888 799999999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred CC
Q psy633 298 SN 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 338 n~ 339 (437)
T 1n11_A 338 NA 339 (437)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 99
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.77 E-value=1.3e-19 Score=153.89 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=106.6
Q ss_pred cccCCCCCccCccc---cceeeee-cccCC--------------cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccc
Q psy633 171 SQESGSKENEGQTK---GWVNVSS-MINDE--------------SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ 232 (300)
Q Consensus 171 ~~~~~~~~~~a~~~---g~~~~~~-~~~~~--------------~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~ 232 (300)
...+.+++|.|+.. |+..+.. ++... ...+..|.||||+|+..+...++++|+. .|++++.
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~ 129 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQA 129 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCc
Confidence 44667889998865 7663333 33221 1245689999999999888888888888 7999999
Q ss_pred cCc--------------CCchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHhcCc---------HHHH
Q psy633 233 LDE--------------NGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH---------TDLI 287 (300)
Q Consensus 233 ~d~--------------~g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~~g~---------~~iv 287 (300)
.+. .|+||||+|+..|+.+++++|++. .|++++.+|..|+||||+|+..|+ .+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v 209 (273)
T 2pnn_A 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209 (273)
T ss_dssp CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence 987 799999999999999999999985 689999999999999999999998 8999
Q ss_pred HHHHHcCCCCC
Q psy633 288 EYLVNSGAHSS 298 (300)
Q Consensus 288 ~~Ll~~ga~~~ 298 (300)
++|+++|++++
T Consensus 210 ~~Ll~~ga~~n 220 (273)
T 2pnn_A 210 NEILILGAKLH 220 (273)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHhhhhcc
Confidence 99999999875
No 100
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.77 E-value=9.2e-20 Score=153.18 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=103.0
Q ss_pred cCCCCCccCccccceeeeec-ccC---CcccCcC-------------cchHHHHHHhCCHHHHHHHHhhc--CCCCcccc
Q psy633 173 ESGSKENEGQTKGWVNVSSM-IND---ESQLDDN-------------EKNIYEWAKEGKLDMLVKQLTKL--KDFNINQL 233 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~-------------~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~~ 233 (300)
.+.+++|.|+..|+..+..+ +.. .+..+.. |.||||+|+..+...++++|+.. .|++++.+
T Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~ 168 (256)
T 2etb_A 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168 (256)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC
T ss_pred cCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc
Confidence 46688999999888733333 322 2333333 99999999987777777777764 58999999
Q ss_pred CcCCchHHHHHHH--CCCHH-------HHHHHHhhcCCCc-------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 234 DENGLNCLHWACD--RGHLK-------VVQHLIEKCGADV-------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 234 d~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~g~~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
|..|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 169 d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 169 DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 9999999999999 88988 9999999 99999 99999999999999999999999999999875
No 101
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.77 E-value=2.8e-20 Score=141.42 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=100.6
Q ss_pred ccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHC
Q psy633 172 QESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR 247 (300)
Q Consensus 172 ~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~ 247 (300)
..+.+++|.|+..|...+ ..++.. .+..+..|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~ 86 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKN 86 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHHHHHc
Confidence 345667888888777632 223322 34567889999999999888888888888 7999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 297 (300)
|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|.+.+...
T Consensus 87 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~ 135 (137)
T 3c5r_A 87 GHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135 (137)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence 99999999999 99999999999999999999999999999998876653
No 102
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.77 E-value=7.8e-20 Score=153.93 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=103.3
Q ss_pred cCCCCCccCccccceeeeecc-cC---CcccC--------------cCcchHHHHHHhCCHHHHHHHHhhc--CCCCccc
Q psy633 173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLD--------------DNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQ 232 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~--------------~~~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~ 232 (300)
.+.+++|.|+..|+..+..++ .. .+..+ ..|.||||+|+..+...++++|+.. .|++++.
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~ 171 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR 171 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc
Confidence 566789999999987433333 22 23333 5799999999987777777777663 4899999
Q ss_pred cCcCCchHHHHHHHCCC---------HHHHHHHHhhcCCCc-------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633 233 LDENGLNCLHWACDRGH---------LKVVQHLIEKCGADV-------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296 (300)
Q Consensus 233 ~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~g~~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 296 (300)
+|..|+||||+|+..|+ .+++++|++ .|+++ +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 172 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999998888 799999999 99999 77999999999999999999999999999876
Q ss_pred C
Q psy633 297 S 297 (300)
Q Consensus 297 ~ 297 (300)
.
T Consensus 251 ~ 251 (260)
T 3jxi_A 251 D 251 (260)
T ss_dssp H
T ss_pred c
Confidence 4
No 103
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.76 E-value=2.4e-19 Score=153.32 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=106.7
Q ss_pred ccCCCCCccCccccceeee-ecccCC-cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 172 QESGSKENEGQTKGWVNVS-SMINDE-SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 172 ~~~~~~~~~a~~~g~~~~~-~~~~~~-~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
..+.+++|.|+..|...+. .++... +....+|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..|+
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCC
Confidence 4566889999999987333 333332 2222358999999999888888888888 799999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCC-CcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDG-DYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
.+++++|++ .|++++.+|..| .||||+|+..|+.+++++|+++|+++.
T Consensus 108 ~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 156 (285)
T 3kea_A 108 MQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156 (285)
T ss_dssp HHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence 999999999 999999999999 799999999999999999999998863
No 104
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.76 E-value=1.2e-18 Score=144.66 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCH
Q psy633 140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKL 215 (300)
Q Consensus 140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~ 215 (300)
..++..+.++.++.++..... ...+++. ....+.++++.|+..|...+... +.. .+..+..|.||||+|+..+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQ-GGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-TTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCCCc-ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 346788889999888752110 0011111 12345678999999998744333 322 34567789999999998777
Q ss_pred HHHHHHHhhcCCC----CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHH
Q psy633 216 DMLVKQLTKLKDF----NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYL 290 (300)
Q Consensus 216 ~~v~~ll~~~~~~----~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~L 290 (300)
..++++|.. .+. +++..+..|+||||+|+..|+.+++++|++ .|++++..+ ..|.||||+|+..|+.+++++|
T Consensus 92 ~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 169 (241)
T 1k1a_A 92 PTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169 (241)
T ss_dssp HHHHHHHHH-HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH-cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence 777777776 455 788899999999999999999999999999 999999999 8899999999999999999999
Q ss_pred HHcCCCCCC
Q psy633 291 VNSGAHSSN 299 (300)
Q Consensus 291 l~~ga~~~~ 299 (300)
+++|++++.
T Consensus 170 l~~g~~~~~ 178 (241)
T 1k1a_A 170 LQHGANVNA 178 (241)
T ss_dssp HHTTCCTTC
T ss_pred HHcCCCCCC
Confidence 999999875
No 105
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=150.38 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=89.7
Q ss_pred cCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 199 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 199 ~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
.+..|.||||+|+.. +...++++|+. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.|||
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL 263 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETAL 263 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHH
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHH
Confidence 467899999999975 56667777777 699999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCCC
Q psy633 276 DYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 276 ~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
|+|+..|+.+++++|+++|++..
T Consensus 264 ~~A~~~~~~~iv~~Ll~~ga~~g 286 (301)
T 2b0o_E 264 DIARKKHHKECEELLEQAQAGTF 286 (301)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCC
Confidence 99999999999999999988753
No 106
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.76 E-value=3.4e-18 Score=149.46 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCcccc----ceeeeec-cc---CCcccCcCcchHHHHHH
Q psy633 141 SEAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKG----WVNVSSM-IN---DESQLDDNEKNIYEWAK 211 (300)
Q Consensus 141 ~~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~~~~~-~~---~~~~~~~~~~t~l~~a~ 211 (300)
.++..+++++++.|+.. ..+ ++..+ ..+.++++.++..+ ...+..+ +. +.+..+..|.||||+|+
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad-----~n~~d-~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGAD-----VNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCC-----TTCCC-TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHCCCHHHHHHHHhccCCC-----cCccC-CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 36778888888888642 222 11111 12233343322211 1122222 22 24567888999999998
Q ss_pred hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291 (300)
Q Consensus 212 ~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 291 (300)
..+...++++|....+++++.+|..|+||||+|+..|+.++|++||+ .|+++|.+ ||||+|+.+|+.++|++||
T Consensus 248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll 321 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLL 321 (337)
T ss_dssp HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence 87766666666553689999999999999999999999999999999 99999764 5999999999999999999
Q ss_pred HcCCCCCC
Q psy633 292 NSGAHSSN 299 (300)
Q Consensus 292 ~~ga~~~~ 299 (300)
++||++|.
T Consensus 322 ~~GA~~d~ 329 (337)
T 4g8k_A 322 SHGAKEDF 329 (337)
T ss_dssp HTTCCC--
T ss_pred HCcCCCCC
Confidence 99999985
No 107
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.75 E-value=4.1e-19 Score=148.46 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=98.9
Q ss_pred CCCCccCcccccee-eeeccc--CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCH
Q psy633 175 GSKENEGQTKGWVN-VSSMIN--DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHL 250 (300)
Q Consensus 175 ~~~~~~a~~~g~~~-~~~~~~--~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~ 250 (300)
.+++|.|+..|... +..++. ..+..+..|.||||+|+..++..++++|+. .|++++..+ ..|+||||+|+..|+.
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t~L~~A~~~g~~ 124 (244)
T 3ui2_A 46 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRP 124 (244)
T ss_dssp HHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence 34566777777652 222332 235567889999999999888888888888 799999998 7799999999999999
Q ss_pred HHHHHHHhhcCCCccccCCCCCcHHHHHH----------------hcCcHHHHHHHHHcCC
Q psy633 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAK----------------AIEHTDLIEYLVNSGA 295 (300)
Q Consensus 251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~----------------~~g~~~iv~~Ll~~ga 295 (300)
+++++|++ +|++++.+|..|+||||+|+ ..|+.+++++|++++.
T Consensus 125 ~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 125 EVVEALVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 99999999 99999999999999999998 6689999999998643
No 108
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=145.18 Aligned_cols=123 Identities=22% Similarity=0.296 Sum_probs=76.7
Q ss_pred CCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHH-hCCHHHHHHHHhhcCCCCccccCc-CCchHHHHHHHC
Q psy633 174 SGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAK-EGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDR 247 (300)
Q Consensus 174 ~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~-~~~~~~v~~ll~~~~~~~~~~~d~-~g~t~Lh~A~~~ 247 (300)
+.++++.|+..|...+...+ .. .+..+..|.||||+|+ .++...+.++|.. .+++++..+. .|.||||+|+..
T Consensus 109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~ 187 (240)
T 3eu9_A 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLA 187 (240)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHc
Confidence 34556666666655222222 11 2344556667776666 3444555666666 5677766665 677777777777
Q ss_pred CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298 (300)
Q Consensus 248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~ 298 (300)
|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|++..
T Consensus 188 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 188 GNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 77777777777 777777777777777777777777777777777766543
No 109
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.74 E-value=1.4e-19 Score=145.03 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=97.6
Q ss_pred CccCccccce-eeeecccC-CcccC-cCcchHHHHHHhCCHH----HHHHHHhhcCCCCccccCcCCchHHHHHHHCCC-
Q psy633 178 ENEGQTKGWV-NVSSMIND-ESQLD-DNEKNIYEWAKEGKLD----MLVKQLTKLKDFNINQLDENGLNCLHWACDRGH- 249 (300)
Q Consensus 178 ~~~a~~~g~~-~~~~~~~~-~~~~~-~~~~t~l~~a~~~~~~----~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~- 249 (300)
++.|+..|.. .+..++.. .+..+ ..|+||||+|+..+.. .++++|+. .|+++|.+|..|+||||+|+..|+
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 5566666654 22222222 23334 6799999999987643 47888888 799999999999999999999987
Q ss_pred -----HHHHHHHHhhcCCCccccCCCCC-cHHHHHHhcC-----cHHHHHHHHH-cCCCCCCC
Q psy633 250 -----LKVVQHLIEKCGADVNVTDSDGD-YGLDYAKAIE-----HTDLIEYLVN-SGAHSSNT 300 (300)
Q Consensus 250 -----~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~ga~~~~~ 300 (300)
.+++++||+ .|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|||++.+
T Consensus 89 ~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 89 DITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150 (186)
T ss_dssp CHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred chhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence 688999999 9999999999999 9999999954 4679999999 99999863
No 110
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.74 E-value=2.5e-18 Score=152.62 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=113.8
Q ss_pred hcccccccCCCCCccCccccceeeeecc------------cCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc
Q psy633 166 INWDESQESGSKENEGQTKGWVNVSSMI------------NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL 233 (300)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~------------~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~ 233 (300)
++..+...+.+++|.|+..|+..+...+ ...+..+..|.||||+|+..+...++++|+. .|++++..
T Consensus 117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~ 195 (373)
T 2fo1_E 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY 195 (373)
T ss_dssp TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC
T ss_pred ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCccc
Confidence 3444445677899999999987443332 1245678899999999999888888888888 79999999
Q ss_pred CcCCchHHHHHHHCCCHHHHHHHHhhcC---CCccccCCCCCcHHHHHHhcC---cHHHHHHHHHcCCCCCC
Q psy633 234 DENGLNCLHWACDRGHLKVVQHLIEKCG---ADVNVTDSDGDYGLDYAKAIE---HTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 234 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g---~~~~~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~ga~~~~ 299 (300)
|..|.||||+|+..|+.+++++|++ .+ ++++..|..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~ 266 (373)
T 2fo1_E 196 NKSERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266 (373)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHTT-SHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHh-cCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999 87 899999999999999999998 99999999999999874
No 111
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.74 E-value=3e-18 Score=127.61 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=78.4
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
+..+..|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 34 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~ 111 (123)
T 3aaa_C 34 NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFE 111 (123)
T ss_dssp TSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence 4456789999999999888888888888 799999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHH
Q psy633 277 YAKAIEHTDL 286 (300)
Q Consensus 277 ~A~~~g~~~i 286 (300)
+|+..+..++
T Consensus 112 ~A~~~~~~~l 121 (123)
T 3aaa_C 112 ATDNQAIKAL 121 (123)
T ss_dssp HCCCHHHHHH
T ss_pred HhCCHHHHHH
Confidence 9955444433
No 112
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.74 E-value=1.6e-17 Score=132.60 Aligned_cols=95 Identities=27% Similarity=0.393 Sum_probs=83.8
Q ss_pred cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
+..+..|.||||+|+..+...++++|.. .|++++..+ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl 147 (183)
T 3deo_A 70 DAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTAL 147 (183)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH-cCCCCcCCCCCCCCHH
Confidence 4456789999999999887788888888 799999998 889999999999999999999999 9999999999999999
Q ss_pred HHHHhc----------------CcHHHHHHHHHc
Q psy633 276 DYAKAI----------------EHTDLIEYLVNS 293 (300)
Q Consensus 276 ~~A~~~----------------g~~~iv~~Ll~~ 293 (300)
|+|+.. |+.+++++|.++
T Consensus 148 ~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 148 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 999876 566777777654
No 113
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=143.15 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM 217 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~ 217 (300)
++..+.+++++.|+..... ........+.++++.|+..|...+... +.. .+..+..|.||||+|+..+...
T Consensus 49 A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 123 (240)
T 3eu9_A 49 AAINNRIDLVKYYISKGAI-----VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----TTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHcCCc-----chhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence 5566677777777765443 222222335577888888887633333 322 3456778999999999988888
Q ss_pred HHHHHhhcCCCCccccCcCCchHHHHHHHCCC-HHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
+.++|.. .|++++..+..|.||||+|+..++ .+++++|+. .|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 124 ~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 124 IVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 8888888 799999999999999999997776 899999999 9999999997 99999999999999999999999999
Q ss_pred CCCC
Q psy633 296 HSSN 299 (300)
Q Consensus 296 ~~~~ 299 (300)
+++.
T Consensus 202 ~~~~ 205 (240)
T 3eu9_A 202 NVDA 205 (240)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9875
No 114
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=2e-18 Score=152.38 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=98.2
Q ss_pred CCccCccc-cce-eeeecccC---CcccC--cCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633 177 KENEGQTK-GWV-NVSSMIND---ESQLD--DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249 (300)
Q Consensus 177 ~~~~a~~~-g~~-~~~~~~~~---~~~~~--~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 249 (300)
+++.|+.. |.. .+..++.. .+..+ ..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+
T Consensus 202 ~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~ 280 (368)
T 3jue_A 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGH 280 (368)
T ss_dssp HHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCc
Confidence 46677776 665 33333332 23344 678999999999888888888888 799999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295 (300)
Q Consensus 250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 295 (300)
.+++++||+ .|++++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus 281 ~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 281 TGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999 999999999999999999999999999999998764
No 115
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.71 E-value=3.4e-17 Score=144.54 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=87.6
Q ss_pred CcCcchHHHHHHhC-CHHHHHHHHhhcCCCCccccC--cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633 200 DDNEKNIYEWAKEG-KLDMLVKQLTKLKDFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276 (300)
Q Consensus 200 ~~~~~t~l~~a~~~-~~~~v~~ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~ 276 (300)
...+.++||+|+.. +...++++|+. .|++++..+ ..|+||||+|+..|+.+++++||+ .|+++|.+|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHH
Confidence 34567899999876 65556666666 699999998 789999999999999999999999 99999999999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCC
Q psy633 277 YAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 277 ~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+..|+.+++++|+++||+++.
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~ 296 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGA 296 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCcHHHHHHHHHCcCCCCC
Confidence 99999999999999999999975
No 116
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.2e-16 Score=147.00 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=81.5
Q ss_pred hHHHHHHh-CCHHHHHHHHhhcCCCCcccc------CcCCchHHHHHHH---CCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633 205 NIYEWAKE-GKLDMLVKQLTKLKDFNINQL------DENGLNCLHWACD---RGHLKVVQHLIEKCGADVNVTDSDGDYG 274 (300)
Q Consensus 205 t~l~~a~~-~~~~~v~~ll~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp 274 (300)
+.||.|+. |+...+..+|.. |+++|.. |..|+||||+||. .|+.+++++||+ .|+++|.+|..|+||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCH
T ss_pred HHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcH
Confidence 45666654 666666666655 8999887 8889999999976 999999999999 999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 275 LDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 275 L~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
||+|+..|+.++|++|+++||+++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~ 236 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTV 236 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 99999999999999999999999863
No 117
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.67 E-value=2.5e-16 Score=134.14 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=81.0
Q ss_pred chHHHHHHh-CCHHHHHHHHhhcCCCC------ccccCcCCchHHHHHHHC---CCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 204 KNIYEWAKE-GKLDMLVKQLTKLKDFN------INQLDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 204 ~t~l~~a~~-~~~~~v~~ll~~~~~~~------~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
.++|+.|+. ++...+..++.. |.+ ++..+..|+||||+|+.. |+.+++++|++ .|+++|.+|..|+|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~T 207 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCC
Confidence 456666655 677766666655 777 445588899999999999 89999999999 99999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 274 GLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 274 pL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
|||+|+..|+.++|++|+++||+++.+
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~~~~ 234 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASIEIA 234 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999863
No 118
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=135.57 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=82.0
Q ss_pred chHHHHHH-hCCHHHHHHHHhhcCCCCccc------cCcCCchHHHHHHHC---CCHHHHHHHHhhcCCCccccCCCCCc
Q psy633 204 KNIYEWAK-EGKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDY 273 (300)
Q Consensus 204 ~t~l~~a~-~~~~~~v~~ll~~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~g~~~~~~d~~g~T 273 (300)
.++|+.|+ .++...+..+|. .|.+++. .+..|+||||+|+.. |+.+++++||+ .|+++|.+|..|+|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~T 228 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNT 228 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCC
T ss_pred HHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCC
Confidence 34566665 466666666664 4899988 688999999999997 89999999999 99999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633 274 GLDYAKAIEHTDLIEYLVNSGAHSSNT 300 (300)
Q Consensus 274 pL~~A~~~g~~~iv~~Ll~~ga~~~~~ 300 (300)
|||+|+..|+.+++++|+++||+++.+
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~ 255 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTV 255 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999763
No 119
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.66 E-value=2.1e-16 Score=111.58 Aligned_cols=63 Identities=40% Similarity=0.616 Sum_probs=59.7
Q ss_pred CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
+|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 63 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 48999999999999999999999 9999999999999999999999999999999999999875
No 120
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.66 E-value=1.1e-16 Score=139.59 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=87.2
Q ss_pred cc-cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC---HHHHHHHHhhcC-CCccccCCCC
Q psy633 197 SQ-LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCG-ADVNVTDSDG 271 (300)
Q Consensus 197 ~~-~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~g-~~~~~~d~~g 271 (300)
+. .+..|.||||+|+..+...++++|++ .|++++.+|..|+||||+|+..|+ .++++.|++ .+ ++++.+|..|
T Consensus 124 n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~-~~~~~~~~~d~~g 201 (327)
T 1sw6_A 124 NIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD-YLYPCLILEDSMN 201 (327)
T ss_dssp CSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH-HHGGGGGEECTTC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH-hhhccccCCCCCC
Confidence 44 68899999999999888888888888 899999999999999999999999 788888888 55 7899999999
Q ss_pred CcHHHHHHh----cCcHHHHHHHHHc
Q psy633 272 DYGLDYAKA----IEHTDLIEYLVNS 293 (300)
Q Consensus 272 ~TpL~~A~~----~g~~~iv~~Ll~~ 293 (300)
+||||+|+. .|+.+++++|++.
T Consensus 202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 202 RTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp CCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHccccccHHHHHHHHHH
Confidence 999999999 8999999999987
No 121
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.64 E-value=3.7e-18 Score=151.18 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=51.4
Q ss_pred cCcchHHHHHHhCCHHHHHHHHhhcCCCCc---cccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccc--cCCCCCcHH
Q psy633 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNI---NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV--TDSDGDYGL 275 (300)
Q Consensus 201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~--~d~~g~TpL 275 (300)
..+.||||+|+..++.+++++|.. .|+++ +..+.. +||||+||..|+.++|++|++ .|++++. .|..|.|||
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~TpL 202 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYYAF 202 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCCHH
Confidence 345556666666555555555555 45431 112222 566666666666666666666 6666555 555566666
Q ss_pred HHHH-hcCcHHHHHHHHHcC
Q psy633 276 DYAK-AIEHTDLIEYLVNSG 294 (300)
Q Consensus 276 ~~A~-~~g~~~iv~~Ll~~g 294 (300)
|+|+ ..|+.++|++|++.|
T Consensus 203 ~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 203 RWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHHSTTCCHHHHHHHTTSH
T ss_pred HHHHHHCCCHHHHHHHHhCC
Confidence 6666 666666666666544
No 122
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.59 E-value=2.5e-18 Score=152.27 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-CCc-----ccCcCcchHHHHHHhCCH
Q psy633 142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-DES-----QLDDNEKNIYEWAKEGKL 215 (300)
Q Consensus 142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~~~-----~~~~~~~t~l~~a~~~~~ 215 (300)
+|..+.+++++.|+....+... .........++++.|+..|+..+..++. ... ..+..+.||||+|+..++
T Consensus 99 Aa~~G~~e~v~~Ll~~ga~~~~---~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~ 175 (376)
T 2aja_A 99 AAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175 (376)
T ss_dssp HHHHCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCcHHH---HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCC
Confidence 7899999999999887542100 0001112234899999999985444443 331 222233899999999999
Q ss_pred HHHHHHHhhcCCCCccc--cCcCCchHHHHHH-HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633 216 DMLVKQLTKLKDFNINQ--LDENGLNCLHWAC-DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292 (300)
Q Consensus 216 ~~v~~ll~~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 292 (300)
.+++++|.. .|++++. .|..|+||||+|+ ..|+.++|++|++ .|+ .|.||||+|+..|+.+++++|++
T Consensus 176 ~eiv~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 176 LHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPV-------MLAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp HHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHH-------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred HHHHHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCC-------ccchHHHHHHHCCCHHHHHHHHh
Confidence 999999998 7999887 8889999999999 9999999999999 774 28999999999999999999999
Q ss_pred cCCCC
Q psy633 293 SGAHS 297 (300)
Q Consensus 293 ~ga~~ 297 (300)
+|+++
T Consensus 247 ~ga~~ 251 (376)
T 2aja_A 247 HVNRL 251 (376)
T ss_dssp HHHHH
T ss_pred cCccc
Confidence 98865
No 123
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.58 E-value=4.4e-15 Score=108.21 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=62.4
Q ss_pred CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299 (300)
Q Consensus 229 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 299 (300)
.+...|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~ 85 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 345578889999999999999999999999 9999999999999999999999999999999999999875
No 124
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.50 E-value=3.5e-15 Score=109.44 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=81.4
Q ss_pred cCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633 173 ESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248 (300)
Q Consensus 173 ~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 248 (300)
.+.+++|.|+..|...+.. ++.. .+..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHHHTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCC
Confidence 3455677777766652222 2222 34567789999999999888889999988 89999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633 249 HLKVVQHLIEKCGADVNVTDSDGDYGL 275 (300)
Q Consensus 249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL 275 (300)
+.+++++|++ .|+++|.++..|.||-
T Consensus 87 ~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 87 HHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred CHHHHHHHHH-cCCCCCcCCccccccc
Confidence 9999999999 9999999999999984
No 125
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=92.22 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=47.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+|+|++|+.||++||||||+|.+.++|.+|++ +++..|+||+|.|..|+|
T Consensus 48 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 67899999999999999999999999999998 999999999999999876
No 126
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.29 E-value=1.6e-12 Score=90.98 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=45.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.+++|+.||++||||||+|.+.+++.+|++ +++..++||+|.|..+.+...
T Consensus 32 ~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 32 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 68899999999999999999999999999997 999999999999999987643
No 127
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=91.65 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=47.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|+|++|+.||++||||||+|.+.++|.+|++ + ++..++||+|.|..|.|+..
T Consensus 31 ~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 31 EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 57889999999999999999999999999998 5 45679999999999987643
No 128
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=91.79 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=45.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCc----eecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSH----VLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~----~~~g~~~~v~~a~~ 51 (300)
+|++++|+.||+|||||||+|.+.++|.+|++ +++. .|+||+|.|..|+.
T Consensus 40 ~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 68899999999999999999999999999998 7764 69999999998863
No 129
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=92.67 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=48.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|++|+.||++||||||+|.+.++|++|++ +++..++||+|.|..+..+
T Consensus 35 ~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 35 EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 68899999999999999999999999999998 9999999999999998644
No 130
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.26 E-value=6.7e-12 Score=100.73 Aligned_cols=95 Identities=22% Similarity=0.373 Sum_probs=74.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
+|.|+.|+.||++||||||+|.+.++|.+|++.+++.++|+.|.|..+.++......... ...
T Consensus 42 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~-----------------~~~ 104 (196)
T 1l3k_A 42 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAH-----------------LTV 104 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC----------------------------CC
T ss_pred EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccC-----------------CCc
Confidence 688999999999999999999999999999999999999999999998765432211100 001
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.+.||++++..++++++.++|..|+.+.....
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 136 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 136 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 22389999999999999999999998765444
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.25 E-value=1e-11 Score=101.25 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=76.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|+|++|+.||++||||||+|.+.+++.+|++ +++..+.|+.+++..+.+........ ...
T Consensus 44 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~--~~~---------------- 105 (213)
T 4f02_A 44 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG--VGN---------------- 105 (213)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHC--TTE----------------
T ss_pred EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccc--ccc----------------
Confidence 68999999999999999999999999999998 89999999999998886554322111 112
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+....+
T Consensus 106 ---l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i 135 (213)
T 4f02_A 106 ---IFIKNLDKSIDNKALYDTFSAFGNILSCKV 135 (213)
T ss_dssp ---EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred ---ceECCcccccHHHHHHHHHhhcCCeEEEEe
Confidence 289999999999999999999998765544
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.25 E-value=2.2e-12 Score=92.08 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=48.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC-ccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG-SRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g-~~~~v~~a~~~ 52 (300)
+|.|++|+.||++||||||+|.+.++|.+|++ +++..++| |+|.|..|.++
T Consensus 41 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 41 NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 68899999999999999999999999999998 99999999 99999998654
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.23 E-value=2.2e-11 Score=94.96 Aligned_cols=89 Identities=18% Similarity=0.389 Sum_probs=75.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
++.++.|+.+|++||||||+|.+++++.+|++ +++..++|+++.|..+.+...... ...
T Consensus 31 ~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~----~~~---------------- 90 (167)
T 1fxl_A 31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR----DAN---------------- 90 (167)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGT----TCE----------------
T ss_pred EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCC----CCc----------------
Confidence 57899999999999999999999999999998 899999999999999876643221 112
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.++++++..++++++.++|..|+.+.....
T Consensus 91 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 120 (167)
T 1fxl_A 91 ---LYVSGLPKTMTQKELEQLFSQYGRIITSRI 120 (167)
T ss_dssp ---EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred ---EEECCCCCcCCHHHHHHHHHhcCCEeEEEE
Confidence 289999999999999999999997765443
No 134
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.22 E-value=1.4e-11 Score=96.24 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=75.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
++.++.|+.||++||||||+|.+++++.+|++ +++..++|++|.|..+.++..... ...
T Consensus 32 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~----~~~---------------- 91 (168)
T 1b7f_A 32 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK----DTN---------------- 91 (168)
T ss_dssp EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTT----TCE----------------
T ss_pred EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCC----CCC----------------
Confidence 57889999999999999999999999999998 999999999999999876643211 112
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.++++++..++++++.++|..|+.+.....
T Consensus 92 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 121 (168)
T 1b7f_A 92 ---LYVTNLPRTITDDQLDTIFGKYGSIVQKNI 121 (168)
T ss_dssp ---EEEESCCTTCCHHHHHHHHTSSSCEEEEEE
T ss_pred ---EEEeCCCCCCCHHHHHHhhhcCCcEEEEEE
Confidence 289999999999999999999997765443
No 135
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.19 E-value=2.2e-11 Score=83.61 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
++.+++|+.||++||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus 30 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 30 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 57899999999999999999999999999999 89999999999999998764
No 136
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.19 E-value=2.1e-11 Score=95.19 Aligned_cols=89 Identities=22% Similarity=0.414 Sum_probs=73.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
+|.+++|+.||++||||||+|.+++++.+|++ .++.++|+.|.|..+.++.... ...
T Consensus 32 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~~~~~----~~~------------------ 88 (167)
T 2cjk_A 32 DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQD----KTG------------------ 88 (167)
T ss_dssp EEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCCHHHHH----HCE------------------
T ss_pred EEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccchhhcc----CCC------------------
Confidence 57889999999999999999999999999998 4689999999998887643211 111
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..||++++..++++++.++|..|+.+......
T Consensus 89 -~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~ 120 (167)
T 2cjk_A 89 -KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 120 (167)
T ss_dssp -EEEEEEECTTCCHHHHHHHHHTTSCCSEEECC
T ss_pred -eEEECCCCCCCCHHHHHHHHHhCccEEEEEEE
Confidence 23899999999999999999999987655443
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.18 E-value=1.6e-11 Score=82.62 Aligned_cols=48 Identities=35% Similarity=0.641 Sum_probs=45.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a 49 (300)
++.++.|+.||++||||||+|.+++++++|++++++.++|++|.|+.|
T Consensus 28 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 578899999999999999999999999999999999999999999875
No 138
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=95.01 Aligned_cols=52 Identities=23% Similarity=0.480 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+.||++||||||+|.+.++|.+|++ ++++.|+||.|.|..|.++.
T Consensus 86 ~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 86 ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQN 138 (156)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence 68899999999999999999999999999999 89999999999999997654
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=88.98 Aligned_cols=51 Identities=14% Similarity=0.282 Sum_probs=46.8
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
.+|.|++|+. |++||||||+|.+++++++|+.++++.|+||.|+|..+.++
T Consensus 43 ~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 43 DAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred eEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 3689999976 99999999999999999999999999999999999888654
No 140
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=3.1e-11 Score=85.86 Aligned_cols=53 Identities=23% Similarity=0.617 Sum_probs=49.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||++||||||+|.+.+++.+|++++++.|+|+.|.|..+.++..
T Consensus 39 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 39 EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 67899999999999999999999999999999999999999999999987754
No 141
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.16 E-value=4.5e-11 Score=97.38 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=74.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|.+++|+.+|++||||||+|.+.+++.+|++ +++..++|+.|.|..+..+.......... . ...-.
T Consensus 57 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~------~------~~~~~ 124 (216)
T 2qfj_A 57 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL------A------EEARA 124 (216)
T ss_dssp EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH------H------HHHTT
T ss_pred EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh------h------cccCC
Confidence 57899999999999999999999999999999 99999999999998887654321110000 0 00111
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
..+.||++++..++++++.++|..|+.+.....
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 233489999999999999999999997765544
No 142
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.16 E-value=2.4e-11 Score=88.97 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=45.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|+|++|+ +++||||||+|.+.++|++|++ ++++.|+||+|.|..+.++..
T Consensus 34 ~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 34 SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp EEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred EEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 67899996 4589999999999999999998 999999999999999887643
No 143
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=3.4e-11 Score=86.37 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=49.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.||++||||||+|.+.+++.+|+.+++..|+|++|.|..+.++..
T Consensus 43 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 43 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 68899999999999999999999999999999999999999999999987654
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.15 E-value=3.8e-11 Score=87.05 Aligned_cols=54 Identities=35% Similarity=0.517 Sum_probs=49.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|++|+.||++||||||+|.+.+++.+|++..++.++|+.|.|..+.++...
T Consensus 54 ~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 54 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCCC
T ss_pred EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCCC
Confidence 688999999999999999999999999999996569999999999999887643
No 145
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.3e-11 Score=87.00 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=47.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+ +|++||||||+|.+++++++|++++++.|+||.|+|..+.+..
T Consensus 43 ~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 43 RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 68899998 9999999999999999999999999999999999998887554
No 146
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.14 E-value=1.7e-11 Score=96.59 Aligned_cols=86 Identities=15% Similarity=0.298 Sum_probs=71.9
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD 84 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~ 84 (300)
++.|+.+|++||||||+|.++++|.+|+++++..+.|++|.|..+.++...... .... .
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~--~~~~-------------------l 102 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR--AART-------------------L 102 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTG--GGGE-------------------E
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccc--cCCE-------------------E
Confidence 467778999999999999999999999999999999999999999876432211 1122 3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
||++++..++++++.++|..|+.+...
T Consensus 103 ~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 103 LAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp EEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 899999999999999999999877654
No 147
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.14 E-value=3.9e-11 Score=83.13 Aligned_cols=51 Identities=31% Similarity=0.473 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++.++.|+.+|++||||||+|.+.++|.+|++ ++++.++|+.|.|..+.++
T Consensus 35 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 35 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 67899999999999999999999999999999 8999999999999998765
No 148
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.9e-11 Score=85.33 Aligned_cols=53 Identities=26% Similarity=0.547 Sum_probs=49.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.++.|+.+|++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus 41 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 41 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 68899999999999999999999999999998 999999999999999987754
No 149
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=5e-11 Score=84.25 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=49.3
Q ss_pred eE-EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~-~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++ .|++|+.+|++||||||+|.+.++|.+|++ ++++.++|++|.|..+.++..
T Consensus 34 ~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 34 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 45 899999999999999999999999999999 999999999999999987654
No 150
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.12 E-value=5.5e-11 Score=84.76 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=48.3
Q ss_pred eEEEeeeC-CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+ .+|++||||||+|.+.+++.+|+.+++..|+|+.|.|..+.++.
T Consensus 47 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 47 AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 57889998 69999999999999999999999999999999999999998764
No 151
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.12 E-value=6.8e-11 Score=83.60 Aligned_cols=53 Identities=28% Similarity=0.426 Sum_probs=49.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|+.|+.||++||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus 31 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 31 NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 57889999999999999999999999999998 999999999999999987754
No 152
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.12 E-value=5.8e-11 Score=82.29 Aligned_cols=48 Identities=33% Similarity=0.704 Sum_probs=45.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a 49 (300)
++.+++|+.||++||||||+|.+.+++.+|++++++.++|++|.|+.|
T Consensus 40 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 40 DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 578999999999999999999999999999998889999999999765
No 153
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=9.4e-11 Score=82.64 Aligned_cols=53 Identities=28% Similarity=0.523 Sum_probs=49.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.++.|+.||++||||||+|.+.+++.+|++ ++++.++|++|.|..+.++..
T Consensus 34 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 34 NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 57899999999999999999999999999999 999999999999999987654
No 154
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.11 E-value=6.5e-11 Score=82.60 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=45.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.+++|+.||++||||||+|.+.+ +.+|+. +++..++|++|.|..|.++..
T Consensus 30 ~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 30 NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6889999999999999999999999 999998 899999999999999987643
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.11 E-value=3.7e-11 Score=80.77 Aligned_cols=48 Identities=27% Similarity=0.481 Sum_probs=44.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a 49 (300)
++.+++|+.||++||||||+|.+++++.+|++++++.++|++|.|+.|
T Consensus 28 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 28 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 577889999999999999999999999999999999999999998764
No 156
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.7e-11 Score=86.77 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=44.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
+|.|++|+. |++||||||+|.++++|.+|+.++++.++|+.|.|..+.
T Consensus 40 ~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 40 NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp EEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred EEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 688999987 999999999999999999999999999999999998754
No 157
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=90.65 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=48.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCc----eecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSH----VLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~----~~~g~~~~v~~a~~~~~ 54 (300)
+|+|++|+.||++||||||+|.+. ++.+|+. +++. .++||+|.|+.+.++..
T Consensus 54 ~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 54 NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 389999999999999999999999 9999998 9999 99999999999987643
No 158
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.10 E-value=9e-11 Score=85.89 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=50.1
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.+|.|++|+.+|++||||||+|.+.+++.+|++ +++..|+|++|.|..+.++..
T Consensus 53 ~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 53 VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 368899999999999999999999999999997 899999999999999987754
No 159
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=6.9e-11 Score=82.66 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=48.1
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
.+|.|++| .+|++||||||+|.+.+++.+|+.+++..|+||.|.|..+.++.
T Consensus 37 ~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 37 VAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp SEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred eEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 36889999 89999999999999999999999999999999999999987763
No 160
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=7.8e-11 Score=84.72 Aligned_cols=54 Identities=33% Similarity=0.656 Sum_probs=50.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|+.|+.||++||||||+|.+.+++.+|+..+++.|+|+.|.|..+.++...
T Consensus 45 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 45 DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence 678999999999999999999999999999998999999999999999887643
No 161
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.09 E-value=9.8e-11 Score=84.67 Aligned_cols=52 Identities=29% Similarity=0.575 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
++.+++|+.+|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus 55 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 55 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 57899999999999999999999999999998 99999999999999998764
No 162
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.09 E-value=1.3e-10 Score=80.90 Aligned_cols=51 Identities=25% Similarity=0.629 Sum_probs=47.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
++.++.|+.||++||||||+|.+.+++.+|+.++++.++|++|.|..+.++
T Consensus 35 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 35 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 578999999999999999999999999999999999999999999998764
No 163
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.09 E-value=8.1e-11 Score=100.15 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=75.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
++.+++|+.||++||||||+|.+.+++.+|+. +++..++|++|.|..+.++...... .....
T Consensus 124 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~-~~~~~---------------- 186 (284)
T 3smz_A 124 RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPAL-LHSRC---------------- 186 (284)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTT-TSCSE----------------
T ss_pred EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCccc-CCccE----------------
Confidence 57889999999999999999999999999996 9999999999999998765432211 11112
Q ss_pred HHhhhhcccccCC-ChHHHHHHHHhhcccccccCC
Q psy633 81 QACDYLPSLVKKL-DSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 81 ~a~~~v~~~~~~~-~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.||++++..+ +++++.++|..|+.+......
T Consensus 187 ---l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 187 ---LCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp ---EEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred ---EEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 3899999996 999999999999987655443
No 164
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=1e-10 Score=83.20 Aligned_cols=53 Identities=32% Similarity=0.463 Sum_probs=49.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.+|++||||||+|.+.+++.+|++ ++++.++|++|.|..+.++..
T Consensus 37 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 57889999999999999999999999999996 999999999999999987754
No 165
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.2e-10 Score=85.33 Aligned_cols=53 Identities=28% Similarity=0.504 Sum_probs=49.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||++||||||+|.+.+++.+|++.+++.|+|+.|.|..+.++..
T Consensus 56 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 56 DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCC
T ss_pred EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCcc
Confidence 68899999999999999999999999999999999999999999999988754
No 166
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1e-10 Score=83.80 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=49.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.+|++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 44 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 67899999999999999999999999999999 999999999999999987654
No 167
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=9.6e-11 Score=84.06 Aligned_cols=54 Identities=22% Similarity=0.531 Sum_probs=50.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
++.++.|+.+|++||||||+|.+.+++.+|++ +++..++|+.|.|..+.++...
T Consensus 37 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 37 SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 68899999999999999999999999999998 9999999999999999876543
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.09 E-value=3e-11 Score=89.44 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=45.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|++|+. |++||||||+|.+++++++|+++++..|+||.|+|..+.++
T Consensus 72 ~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 72 GITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp EEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 688999987 99999999999999999999998889999999999887543
No 169
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.1e-10 Score=85.22 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=49.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.|.|++|+.||++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 48899999999999999999999999999999 899999999999999987654
No 170
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=6.5e-11 Score=84.66 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=49.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||++||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus 41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 41 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 67899999999999999999999999999998 899999999999999987654
No 171
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=82.95 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=45.6
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+.+++|+.||++||||||+|.+.+++.+|++ +++..++|+.|.|..|+
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 8899999999999999999999999999998 99999999999998763
No 172
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=9.8e-11 Score=84.05 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=49.4
Q ss_pred eEEEeeeCCC-CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t-~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.| |++||||||+|.+.+++.+|+.++++.|+|+.|.|..+.++..
T Consensus 43 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 43 AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCC
Confidence 6789999998 9999999999999999999999999999999999999987654
No 173
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.2e-10 Score=83.78 Aligned_cols=53 Identities=30% Similarity=0.515 Sum_probs=49.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.+|++||||||+|.+.+++.+|++ ++++.|+|++|.|..+.++..
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 44 NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 57889999999999999999999999999999 899999999999999987643
No 174
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.07 E-value=1.9e-10 Score=85.89 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+.||++||||||+|.+.++|++|++ +++..|+|++|.|..+.++.
T Consensus 75 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 75 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 67899999999999999999999999999999 99999999999999998764
No 175
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=1.3e-10 Score=84.45 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=49.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC------CceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD------SHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~------~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.||++||||||+|.+.++|.+|++ ++ ++.|+|+.|.|..+.++..
T Consensus 44 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 44 YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 57899999999999999999999999999998 88 9999999999999987754
No 176
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=9.8e-11 Score=84.35 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=48.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|+.|+.||++||||||+|.+.++|.+|++ ++++.++|+.|.|..|.++.
T Consensus 52 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 52 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 67899999999999999999999999999998 89999999999999987653
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.9e-10 Score=89.52 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=72.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
++.++.|+ +|+++|||||+|.+.+++.+|++ +++..+.|+.+.|..+.++...... ....
T Consensus 29 ~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~--~~~~---------------- 89 (166)
T 3md3_A 29 NIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSD--DTFN---------------- 89 (166)
T ss_dssp EEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCT--TCEE----------------
T ss_pred EEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCC--CCce----------------
Confidence 57888896 58899999999999999999996 9999999999999998765432111 1112
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.++++++..++++++.++|..|+.+.....
T Consensus 90 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 90 ---LFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp ---EEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred ---EEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 289999999999999999999998765544
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.6e-10 Score=82.90 Aligned_cols=53 Identities=26% Similarity=0.522 Sum_probs=48.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCce-ecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHV-LEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~-~~g~~~~v~~a~~~~~~ 55 (300)
+|.|++|+ +|++||||||+|.+.++|.+|++ +++.. ++|++|.|..+.++...
T Consensus 39 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 39 GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 67899998 99999999999999999999999 99999 99999999999876543
No 179
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=5e-11 Score=87.13 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=47.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+ ||++||||||+|.+.+++.+|++++++.|+||.|.|..+.++.
T Consensus 45 ~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 45 AVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp TEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred eEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 48999998 9999999999999999999999999999999999999987654
No 180
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.07 E-value=1.5e-10 Score=84.75 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=50.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|++|+.+|++||||||+|.+.++|++|++ ++++.|+|+.|.|..+.++...
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 44 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 57899999999999999999999999999998 9999999999999999877543
No 181
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.06 E-value=4.7e-11 Score=89.81 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=46.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++
T Consensus 76 ~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 76 GVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp TEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 688999987 99999999999999999999999999999999999998644
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.06 E-value=1.3e-10 Score=83.44 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=45.7
Q ss_pred eEEEeeeCCC-CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t-~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+|.|++|+.+ +++||||||+|.++++|.+|++ |+|..++||+|.|..+.+
T Consensus 42 ~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 42 KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 6789999764 7999999999999999999998 999999999999998853
No 183
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.06 E-value=1.4e-10 Score=79.96 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=45.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
++.+++|+.+|++||||||+|.+.+++.+|++ +++..++|++|.|..|+
T Consensus 36 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 36 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 57889999999999999999999999999997 99999999999998763
No 184
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.1e-10 Score=83.39 Aligned_cols=53 Identities=25% Similarity=0.532 Sum_probs=49.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|+.|+.++++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus 41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 41 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 68899999999999999999999999999997 999999999999999876654
No 185
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.05 E-value=6.9e-11 Score=85.33 Aligned_cols=51 Identities=8% Similarity=0.304 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+. |++||||||+|.+.+++.+|++++++.++||.|+|..+.++.
T Consensus 43 ~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 43 GIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp TEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHH
T ss_pred eEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHH
Confidence 578999987 999999999999999999999999999999999999987543
No 186
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=83.83 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=48.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|+.|+.||++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++.
T Consensus 42 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 42 DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 57889999999999999999999999999999 99999999999999998654
No 187
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=82.12 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=48.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|+.|+ +|++||||||+|.+.++|.+|++ +++..++|++|.|..+.++..
T Consensus 46 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 46 DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 57899998 99999999999999999999997 899999999999999987653
No 188
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=81.40 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=48.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCcc----ceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSR----LSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~----~~v~~a~~~ 52 (300)
++.|++|+.||++||||||+|.+.+++++|++ +++..++|+. |+|..|.+.
T Consensus 39 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 39 SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 78999999999999999999999999999999 9999999999 999988765
No 189
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.2e-10 Score=80.68 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=47.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
++.+++|+.||++||||||+|.+.+++.+|++ +++..++|++|.|..|.+
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 57899999999999999999999999999999 899999999999998864
No 190
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.04 E-value=1.5e-10 Score=84.00 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=48.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
++.++.|+.||++||||||+|.+.+++.+|+. +++..|+|++|.|..+.++.
T Consensus 55 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 55 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 57889999999999999999999999999999 99999999999999987654
No 191
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.7e-10 Score=77.91 Aligned_cols=47 Identities=38% Similarity=0.596 Sum_probs=44.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
++.++.|+.||++||||||+|.+++++.+|++ ++ +.++|++|.|+.|
T Consensus 29 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 29 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57899999999999999999999999999999 66 9999999999876
No 192
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.03 E-value=2.4e-10 Score=82.31 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=49.2
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee---cCccceecCCCCCch
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL---EGSRLSIQPSDSHNS 54 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~---~g~~~~v~~a~~~~~ 54 (300)
.+|.|+.|+.||++||||||+|.+.++|.+|++ +++..+ .|++|.|..+.++..
T Consensus 41 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 41 YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 368899999999999999999999999999998 999887 899999999987654
No 193
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=80.18 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=45.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
++.++.|+.+|++||||||+|.+.+++.+|++ +++..|+|++|.|..|+
T Consensus 45 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 45 KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 57899999999999999999999999999997 99999999999998763
No 194
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.5e-10 Score=82.04 Aligned_cols=51 Identities=8% Similarity=0.244 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++.++.|+.+|++||||||+|.+.+++++|++ +++..|+|++|.|..+..+
T Consensus 44 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 44 GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 35688999999999999999999999999997 9999999999999998754
No 195
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.03 E-value=3e-10 Score=83.20 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=48.6
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.+|.|+.|+ ||++||||||+|.+.++|++|++ +++..|+|+.|.|..+.++..
T Consensus 35 ~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 35 SEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp SEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 368899998 99999999999999999999998 999999999999999987653
No 196
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2e-10 Score=82.40 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=45.6
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+.|++| .||++||||||+|.+++++.+|+..+++.|+||.|+|..+.++.
T Consensus 46 v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 46 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp EECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 677888 89999999999999999999999999999999999998886553
No 197
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=3.3e-10 Score=81.12 Aligned_cols=52 Identities=38% Similarity=0.534 Sum_probs=48.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||++||||||+|.+.+++.+|+. +++.|+|+.|.|..+.++..
T Consensus 44 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 44 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTCC
T ss_pred EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCCc
Confidence 57899999999999999999999999999998 57899999999999987754
No 198
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=9.3e-11 Score=86.22 Aligned_cols=50 Identities=14% Similarity=0.332 Sum_probs=46.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+|+|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++
T Consensus 49 ~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 49 GVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp GEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred eEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 578999987 99999999999999999999999999999999999888644
No 199
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.6e-10 Score=82.50 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=47.5
Q ss_pred eEEEe-eeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633 2 NASVM-FDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~-~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~ 54 (300)
++.++ .|+.||++||||||+|.+.+++.+|++ ++ +..++|++|.|..|.++..
T Consensus 38 ~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 38 DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 46677 899999999999999999999999999 75 5899999999999987754
No 200
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.01 E-value=3.4e-10 Score=83.93 Aligned_cols=52 Identities=23% Similarity=0.582 Sum_probs=48.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+.+|++||||||+|.+.+++.+|++++++.|+|+.|.|..+.+..
T Consensus 65 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 65 RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 5789999999999999999999999999999999999999999999987654
No 201
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.01 E-value=2.3e-10 Score=80.63 Aligned_cols=50 Identities=10% Similarity=0.284 Sum_probs=45.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
++.++.|+.+|++||||||+|.+++++.+|++ ++++.|+||+|.|..+.+
T Consensus 44 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 44 GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 36788999999999999999999999999998 899999999999998753
No 202
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=2.5e-10 Score=80.93 Aligned_cols=53 Identities=28% Similarity=0.545 Sum_probs=48.4
Q ss_pred eEEEeeeCC---CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKN---TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~---t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+. |+++||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus 34 ~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 34 SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 578888887 78999999999999999999999 899999999999999987654
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=4.6e-10 Score=81.51 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=47.4
Q ss_pred eEEEeeeCCCC---CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~---~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.++ ++||||||+|.++++|++|++ ++++.|+|++|.|..|.++.+
T Consensus 47 ~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 47 KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 57888888754 566999999999999999999 899999999999999998864
No 204
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.00 E-value=1.2e-10 Score=83.16 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=46.8
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.++.|+.||++||||||+|.+.+++.+|++++++.|+|+.|.|..+.++..
T Consensus 47 ~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 47 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 367888999999999999999999999999999999999999999987643
No 205
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=8.6e-11 Score=86.76 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=45.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|++| .+|++||||||+|.+++++++|++.+++.|+||.|+|..+.++
T Consensus 56 ~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 56 GILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp GEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred eEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 5889999 5899999999999999999999999999999999999887544
No 206
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.00 E-value=1.5e-10 Score=95.17 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=48.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|+|++|+.||++||||||+|.+.+++.+||+ ++++.|+|+.|.|..|.+..
T Consensus 99 ~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 99 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF 151 (229)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCc
Confidence 68899999999999999999999999999999 99999999999999997654
No 207
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=4.3e-10 Score=81.03 Aligned_cols=53 Identities=34% Similarity=0.517 Sum_probs=48.7
Q ss_pred eEEEeee-CCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCch
Q psy633 2 NASVMFD-KNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d-~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.| +.+|++||||||+|.+.++|.+|++ + +++.|+|+.|.|..+.++..
T Consensus 44 ~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 44 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 5788889 8899999999999999999999998 8 99999999999999987654
No 208
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.2e-10 Score=78.91 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=45.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
++.|+.|+.||++||||||+|.+.+++.+|++ +++..++|+.+++.++.
T Consensus 34 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 34 STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57899999999999999999999999999999 99999999999987654
No 209
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.99 E-value=1.6e-10 Score=87.23 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=48.1
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++|.|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++..
T Consensus 73 ~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 73 VRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred eEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 3688999986 9999999999999999999999999999999999998876643
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.99 E-value=2.6e-10 Score=88.28 Aligned_cols=53 Identities=28% Similarity=0.484 Sum_probs=49.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.||++||||||+|.+.+++.+|++ ++++.|+|++|.|..|.++..
T Consensus 99 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 99 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 57899999999999999999999999999998 999999999999999987643
No 211
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.99 E-value=4e-10 Score=88.42 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=69.8
Q ss_pred eEEEeeeCCCC--CccCeEEEEecChHHHHHHHh-cCCceec---CccceecCCCCCchhhhhhhhhhhhhhhhhhhhhh
Q psy633 2 NASVMFDKNTG--LSKGFGFVTFQNKEAVDKVFS-TDSHVLE---GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENM 75 (300)
Q Consensus 2 ~~~~~~d~~t~--~~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (300)
++.+++|+.+| ++||||||+|.++++|.+|++ +++..+. ++.+.+..+.++... ......
T Consensus 32 ~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------- 97 (175)
T 3nmr_A 32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN---AVEDRK----------- 97 (175)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS---CGGGSE-----------
T ss_pred EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc---cCCCCe-----------
Confidence 67899999987 999999999999999999998 8887765 466666665433221 111112
Q ss_pred hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 98 --------l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 98 --------LFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp --------EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred --------EEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 389999999999999999999998765444
No 212
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.98 E-value=3.8e-10 Score=80.81 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=42.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
+|.|++|+. |++||||||+|.++++|.+|+. ++|..++||+|.|..+
T Consensus 56 ~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 56 EMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 678888864 8999999999999999999998 9999999999998754
No 213
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.98 E-value=3.6e-10 Score=85.55 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=49.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.||++||||||+|.+.++|.+|++ +++..|+|+.|.|..+.++..
T Consensus 71 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 68899999999999999999999999999999 999999999999999987643
No 214
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.98 E-value=5.1e-10 Score=87.66 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=68.6
Q ss_pred eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhh
Q psy633 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDY 85 (300)
Q Consensus 6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~ 85 (300)
+.+..++++||||||+|.++++|.+|+.++++.++|+++.|..+.+...... ... .+
T Consensus 42 v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~----~~~-------------------l~ 98 (172)
T 2g4b_A 42 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG----AHK-------------------LF 98 (172)
T ss_dssp EEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTT----TTC-------------------EE
T ss_pred eeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCC----CCE-------------------EE
Confidence 3444567889999999999999999999999999999999998765432111 112 28
Q ss_pred hcccccCCChHHHHHHHHhhcccccccC
Q psy633 86 LPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
|++++..++++++.++|..|+.+.....
T Consensus 99 v~nlp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 99 IGGLPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence 9999999999999999999998765443
No 215
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.98 E-value=5.4e-10 Score=95.38 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=68.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN 80 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 80 (300)
+|.++.|+. |++||||||+|.+.+++.+|+. ++++.++|++|.|..+.++....+.... .-.
T Consensus 147 ~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~----------------~~~ 209 (292)
T 2ghp_A 147 SIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSA----------------TLE 209 (292)
T ss_dssp EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------CCT
T ss_pred EEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccccccc----------------CCC
Confidence 577888876 8999999999999999999999 9999999999999999876543322000 001
Q ss_pred HHhhhhcccccC-CChHHHHHHHHhhcccccccCCC
Q psy633 81 QACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 81 ~a~~~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
..+.||++++.. ++++++.++|..|+.+.......
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 122389999999 99999999999999877655433
No 216
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.98 E-value=4.6e-10 Score=82.43 Aligned_cols=48 Identities=35% Similarity=0.570 Sum_probs=45.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
++.|++|+.||++||||||+|.+.+++.+|++ +++..|+|++|+|..+
T Consensus 69 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 69 SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 57899999999999999999999999999998 9999999999999876
No 217
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.2e-10 Score=86.39 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=46.4
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~ 53 (300)
+.++.|..||++||||||+|.+.+++.+|+.++++.|+||.|.|..+.++.
T Consensus 55 ~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 55 SIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp TCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred eEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 467788899999999999999999999999999999999999999987543
No 218
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.97 E-value=3.8e-10 Score=84.97 Aligned_cols=53 Identities=28% Similarity=0.484 Sum_probs=49.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||++||||||+|.+.+++++|+. +++..|+|++|.|..+.++..
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 67889999999999999999999999999998 899999999999999986543
No 219
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=7e-10 Score=81.20 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=46.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++|+.|+++||||||+|.+.+++++|++ +++ .|+|+.|.|..+.++.
T Consensus 46 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 46 EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 67899999999999999999999999999999 676 9999999999997543
No 220
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.4e-10 Score=84.72 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=47.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|+.|+.||++||||||+|.+.+++.+|+.++++.|+|+.|.|..+.++
T Consensus 54 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 54 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 678999999999999999999999999999999999999999999887654
No 221
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.95 E-value=4.5e-10 Score=83.51 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=48.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.||+++|||||+|.+.++|.+|++ +++..|+|+.|.|..|.++..
T Consensus 51 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 51 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 57889999999999999999999999999998 999999999999999976543
No 222
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.95 E-value=8.4e-10 Score=89.21 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=66.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh--hhh----------hhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK--IET----------KETASF 68 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~--~~~----------~~~~~~ 68 (300)
+|+|++| +||||||+|.+.++|++|++ +++..+.|++|.|..+..+....+.. ... ....++
T Consensus 34 ~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~ 108 (205)
T 3tyt_A 34 KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRF 108 (205)
T ss_dssp EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSC
T ss_pred EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccc
Confidence 4667665 48999999999999999998 99999999999999886432111100 000 000000
Q ss_pred hhhh-hhhhhHH-HHHhhhhcccccCCChHHHHHHHHhhccc
Q psy633 69 SRMA-ENMEDRF-NQACDYLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 69 ~~~~-~~l~~~F-~~a~~~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
.... ....... .....||++++..++++++.++|..|+.+
T Consensus 109 ~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 109 STPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp SSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred cCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 0000 0000000 01235899999999999999999999987
No 223
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.94 E-value=7.6e-10 Score=79.47 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=47.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC---ccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG---SRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g---~~~~v~~a~~~~~ 54 (300)
+|.|+.|+ +|++||||||+|.+.++|.+|++ +++..+.| ++|.|..|.++..
T Consensus 44 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 44 ECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 57889997 89999999999999999999998 99999998 9999999987654
No 224
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=7.9e-10 Score=79.08 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.| +|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus 44 ~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 44 SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 5778888 89999999999999999999999 999999999999999987654
No 225
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.8e-10 Score=82.32 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=41.5
Q ss_pred CeEEEeeeCCCCCccCeEEEEecC----h-HH---HHHHHh---cCCceecCccceecCCC
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQN----K-EA---VDKVFS---TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~----~-~~---~~~a~~---~~~~~~~g~~~~v~~a~ 50 (300)
.+|.+++||.||+|||||||+|.+ + ++ |.+|+. +++..|+||+|+|..-.
T Consensus 34 ~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 34 SHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp SEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred EEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 368999999999999999999996 2 32 777765 59999999999998754
No 226
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=8.8e-10 Score=77.80 Aligned_cols=50 Identities=4% Similarity=0.023 Sum_probs=45.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++|+.+ ||||||+|.+.++|.+|++ +++..++||+|.|..|.++..
T Consensus 42 ~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 42 SVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp EEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred EEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 5789999876 9999999999999999999 999999999999999987643
No 227
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=8e-10 Score=78.76 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|+++.+ .+|++||||||+|.+.+++++|++ ++++.|+|+.|.|..+.++..
T Consensus 41 ~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 41 FIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp EEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 4567777 789999999999999999999999 999999999999999987643
No 228
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=76.93 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=45.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+|.|+.|+. |++||||||+|.+.+++.+|++ ++++.++|++|.|..+..
T Consensus 45 ~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 45 KVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 578899986 9999999999999999999999 999999999999998753
No 229
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.93 E-value=5.2e-10 Score=77.52 Aligned_cols=51 Identities=18% Similarity=0.381 Sum_probs=46.9
Q ss_pred eEEEeeeCCCCC-ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGL-SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~-~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++.++.|+.++. ++|||||+|.+.+++.+|++ +++..++|+.|.|..+.+.
T Consensus 33 ~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 33 MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 578889998877 99999999999999999999 8999999999999988764
No 230
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.92 E-value=9.7e-10 Score=81.47 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=47.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|+.|+ +|++||||||+|.+.+++.+|++ +++..++|+.|.|..|.+..
T Consensus 64 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 64 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp EEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 68899998 99999999999999999999999 99999999999999987654
No 231
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.92 E-value=8.8e-10 Score=75.15 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=38.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCc-cceec
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGS-RLSIQ 47 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~-~~~v~ 47 (300)
++.++ +.||++||||||+|.+.++|.+|++ +++..++|+ +|.|.
T Consensus 36 ~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 36 NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp EEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred EEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 34444 5799999999999999999999999 999999999 88873
No 232
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.92 E-value=1.3e-09 Score=92.62 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|++||||||+|.+.+++.+|++ +++..|.|+.|.|..+..+.
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 89999999999999999999997 99999999999999886544
No 233
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-10 Score=85.21 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=48.8
Q ss_pred EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
|.|++|+.||++||||||+|.+.++|.+|++ +++..++|++|.|..+.++..
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 7899999999999999999999999999999 899999999999999987654
No 234
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.91 E-value=8.4e-10 Score=88.49 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=71.1
Q ss_pred eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhh
Q psy633 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDY 85 (300)
Q Consensus 6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~ 85 (300)
+.+..++++||||||+|.++++|.+|+.++++.++|++|.|..+.++.......... .. ..... ..-...-.....|
T Consensus 42 v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~l~ 118 (198)
T 2yh0_A 42 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENP-SV-YVPGV-VSTVVPDSAHKLF 118 (198)
T ss_dssp EEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCS-SC-CCTTS-SCCCSSCCCCEEE
T ss_pred eEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCC-cC-CCCCC-ccCCCCCCCCEEE
Confidence 445567899999999999999999999999999999999999987653221100000 00 00000 0000001123348
Q ss_pred hcccccCCChHHHHHHHHhhcccccccC
Q psy633 86 LPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
|++++..++++++.++|..|+.+.....
T Consensus 119 v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 146 (198)
T 2yh0_A 119 IGGLPNYLNDDQVKELLTSFGPLKAFNL 146 (198)
T ss_dssp EECCCTTCCHHHHHHHHHTBSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHcCCccEEEE
Confidence 9999999999999999999997754443
No 235
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.91 E-value=1e-09 Score=79.00 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=45.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+|.|++|+ +|++||||||+|.+.++|.+|++ +++..|+|++|.|..|.
T Consensus 58 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 58 KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 67899998 99999999999999999999999 89999999999998764
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.91 E-value=8.2e-10 Score=79.35 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=43.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCc-cceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGS-RLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~-~~~v~~a~~~ 52 (300)
+|.|+ +.||++||||||+|.+.++|.+|+. +++..|+|+ +|.|..|...
T Consensus 50 ~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 50 NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp EEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred EEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 45555 5799999999999999999999999 999999999 9999998754
No 237
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.90 E-value=1.3e-09 Score=84.25 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|+.|+.|+++||||||+|.+.++|.+|++ ++++.|+|++|.|..|.++.
T Consensus 68 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 68 KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 68899999999999999999999999999999 89999999999999998654
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.89 E-value=1.2e-09 Score=82.76 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=44.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 49 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a 49 (300)
++.|++|+.||++||||||+|.+.+++.+|++ +++..|+|++|+|..|
T Consensus 92 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 92 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 57889999999999999999999999999997 9999999999999765
No 239
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.88 E-value=1.2e-09 Score=85.22 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=49.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|+.|+.||++||||||+|.+.++|.+|+. +++..|+|++|.|..+.++...
T Consensus 101 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 101 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 57899999999999999999999999999998 9999999999999999876543
No 240
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.88 E-value=9.2e-10 Score=78.93 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=44.3
Q ss_pred eEEEeeeCCC--CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNT--GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t--~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+|.|++|+.+ +++|||+||+|.++++|.+|++ |+|..++||+|.|..+.
T Consensus 44 ~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 44 SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 6788888865 4799999999999999999998 99999999999998764
No 241
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=2.6e-09 Score=79.21 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.||++||||||+|.+.++|.+|+. +++..|.|++|.|..|.++..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 479999999999999999999998 999999999999999987654
No 242
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.87 E-value=1.9e-09 Score=75.28 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=45.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|++| +|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++..
T Consensus 37 ~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 37 YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 4666664 89999999999999999999999 899999999999999987643
No 243
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.86 E-value=6e-10 Score=79.59 Aligned_cols=51 Identities=31% Similarity=0.638 Sum_probs=46.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+ +|++||||||+|.+.+++++|+. +++.++|+.|.|..+.++..
T Consensus 38 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 38 EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEECC-
T ss_pred EEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcCcc
Confidence 57899998 99999999999999999999999 99999999999998876543
No 244
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=77.54 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=45.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|+.|+ +|++||||||+|.+.+++.+|++ ++++.|+|+.|.|..+.+.
T Consensus 44 ~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 44 RADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred EEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 57889997 69999999999999999999999 9999999999999988643
No 245
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=3.7e-09 Score=75.54 Aligned_cols=52 Identities=29% Similarity=0.590 Sum_probs=46.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|+.|+. .+||||||+|.+.++|.+|+. ++++.|+|+.|.|..+.++...
T Consensus 44 ~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 44 DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred EEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 577888864 499999999999999999998 8999999999999999877543
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.8e-09 Score=77.68 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=43.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee--------cCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL--------EGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~--------~g~~~~v~~a~~~ 52 (300)
++.|+.|+ +|++||||||+|.+.+++.+|++ +++..| .|+++.|+.|.|+
T Consensus 54 ~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 54 STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 57899998 99999999999999999999999 999999 4666777777654
No 247
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=3.4e-09 Score=75.74 Aligned_cols=51 Identities=10% Similarity=0.294 Sum_probs=45.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.|+.+ +||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus 44 ~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 44 SCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred EEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 5788888554 79999999999999999999 999999999999999987643
No 248
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.84 E-value=3.6e-09 Score=72.13 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=35.6
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
|||||||+|.++++|++|++ +|+..+.||+|+|+.|.
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 89999999999999999999 99999999999999983
No 249
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.84 E-value=2.9e-09 Score=85.20 Aligned_cols=55 Identities=27% Similarity=0.545 Sum_probs=47.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV 56 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~ 56 (300)
++.|+.|+.+|++||||||+|.+.++|.+|+..+++.|+|+.|.|..|.++....
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 5789999999999999999999999999999988999999999999999876543
No 250
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.82 E-value=6.3e-09 Score=85.57 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=70.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhh----------hhhhhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIE----------TKETASFSR 70 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~----------~~~~~~~~~ 70 (300)
+|.|++|+ ||||||+|.+.++|.+|++ +++..+.|++|.|..+.++.....+... .....++..
T Consensus 64 ~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (229)
T 2adc_A 64 RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK 138 (229)
T ss_dssp EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCS
T ss_pred EEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCC
Confidence 56777775 8999999999999999998 9999999999999988755321111000 000000000
Q ss_pred hh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633 71 MA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC 113 (300)
Q Consensus 71 ~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~ 113 (300)
.. ..... .-...+.||++++..++++++.++|..|+ .+.....
T Consensus 139 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 139 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 00 00000 00123358999999999999999999998 6654443
No 251
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.8e-09 Score=76.33 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=44.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++.+++|+ +++||||||+|.+.++|.+|++ +++..++|++|.|..+.++
T Consensus 58 ~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 58 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 57888885 4599999999999999999999 8999999999999999876
No 252
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.9e-09 Score=78.64 Aligned_cols=50 Identities=28% Similarity=0.388 Sum_probs=44.1
Q ss_pred EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+..+..+|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus 57 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 57 IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 33444599999999999999999999998 899999999999999987654
No 253
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.81 E-value=2.1e-09 Score=78.56 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred eEEEeeeCC----CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKN----TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~----t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+|.|++|+. ++++|||+||+|.++++|.+|++ ++|..++||+|.|..+.
T Consensus 54 ~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 54 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 678888875 57899999999999999999999 99999999999998764
No 254
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.78 E-value=1.8e-09 Score=76.11 Aligned_cols=46 Identities=17% Similarity=0.427 Sum_probs=42.3
Q ss_pred CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 9 KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 9 ~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+.+|++||||||+|.+.+++.+|+. +++..|+|++|.|..+.++..
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4689999999999999999999999 999999999999999987643
No 255
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.77 E-value=5.9e-09 Score=83.60 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhh----------hhhhhhhh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIET----------KETASFSR 70 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~----------~~~~~~~~ 70 (300)
+|.+++|+ ||||||+|.+.++|.+|++ +++..++|++|.|..+.++.....+.... ....++..
T Consensus 33 ~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 107 (198)
T 1qm9_A 33 RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK 107 (198)
T ss_dssp EEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSS
T ss_pred EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccC
Confidence 46666664 8999999999999999998 99999999999999887543211110000 00000000
Q ss_pred hh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633 71 MA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC 113 (300)
Q Consensus 71 ~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~ 113 (300)
.. ..... .-...+.+|++++..++++++.++|..|+ .+.....
T Consensus 108 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 108 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 00 00000 00123347999999999999999999998 6654443
No 256
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.73 E-value=1.1e-08 Score=83.07 Aligned_cols=53 Identities=23% Similarity=0.408 Sum_probs=49.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|+.|+.+|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus 154 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 57899999999999999999999999999999 999999999999999987644
No 257
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.71 E-value=1.2e-08 Score=80.29 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=46.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+|.|+.|+ +|++||||||+|.+.++|.+|++ +++..|+|++|.|..|.+.
T Consensus 117 ~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 117 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp EEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 68899998 99999999999999999999999 9999999999999998754
No 258
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.5e-08 Score=72.07 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=40.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|++| ||||||+|.+.++|.+|++ ++ +..|+||+|.|..|.++...
T Consensus 45 ~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 45 NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 5667654 7999999999999999998 65 57899999999999876543
No 259
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.70 E-value=3.1e-08 Score=84.39 Aligned_cols=80 Identities=6% Similarity=0.056 Sum_probs=67.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
+|.|+.|+.+ ++|||||+|.+.++|.+|+++++..++|++|.|..+. ...+
T Consensus 70 ~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~-----------~~~l---------------- 120 (292)
T 2ghp_A 70 HVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT-----------ECTL---------------- 120 (292)
T ss_dssp EEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------SCEE----------------
T ss_pred EEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------CCEE----------------
Confidence 5788888754 6899999999999999999999999999999998763 1122
Q ss_pred HhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC 113 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~ 113 (300)
||++++..++++++.++|..|+ .+.....
T Consensus 121 ---~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i 150 (292)
T 2ghp_A 121 ---WMTNFPPSYTQRNIRDLLQDINVVALSIRL 150 (292)
T ss_dssp ---EEECCCTTCCHHHHHHHHHHTTCCCCEEEC
T ss_pred ---EEECCCCCCCHHHHHHHHHHhCCCeEEEEE
Confidence 8999999999999999999999 7665443
No 260
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.70 E-value=1.1e-08 Score=73.92 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=37.4
Q ss_pred CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+++||||||+|.+.++|++|++ +++..++||+|.|..+...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4699999999999999999998 9999999999999998654
No 261
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.9e-08 Score=72.97 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=42.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+| ++.|+ .+||||||+|.+.++|.+|+. +++..++||+|.|..+.++..
T Consensus 55 ~v-~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 55 KL-LLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EE-EEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred EE-EEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 45 34564 389999999999999999998 999999999999999987643
No 262
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.68 E-value=2.1e-08 Score=73.12 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=42.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.++.| +++||||||+|.+.++|.+|++ +++..++|+.|.|..+.++.
T Consensus 37 ~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 37 QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 4666665 5669999999999999999999 99999999999999987654
No 263
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.68 E-value=7.9e-09 Score=78.49 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=41.7
Q ss_pred CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 9 KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 9 ~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
..||++||||||+|.+.++|.+|+. +++..|+|++|.|..|.++.
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 4689999999999999999999999 99999999999999997654
No 264
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.1e-08 Score=70.76 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+++||||||+|.+.+++.+|++ +++..|+|+.|.|..+.++.
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 4799999999999999999997 89999999999999998764
No 265
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.67 E-value=1.1e-08 Score=83.07 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=45.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|+|++|+ +.+||||||+|.+.++|.+|++ ++++.|+||+|.|..|.++..
T Consensus 132 ~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 132 SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred EEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 57888985 4589999999999999999998 999999999999999987643
No 266
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.66 E-value=1.8e-08 Score=90.52 Aligned_cols=52 Identities=13% Similarity=0.540 Sum_probs=48.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|.|+.|+.||+++|||||+|.+.++|.+||. +++..|+|+.|.|..+.++.
T Consensus 131 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 131 RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 67899999999999999999999999999997 99999999999999998654
No 267
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.65 E-value=9.8e-09 Score=72.40 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=41.8
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
.+|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++...
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 46 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 478999999999999999999998 8999999999999999876543
No 268
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=4.1e-08 Score=70.76 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=40.6
Q ss_pred CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.++++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 456799999999999999999997 999999999999999987643
No 269
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.64 E-value=2.6e-08 Score=83.59 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV 90 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~ 90 (300)
+++||||||+|.+.++|.+|+. +++..|.|+.|.|..+.+.. .+ ||++++
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~----------~l-------------------~v~nl~ 105 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA----------AL-------------------TVKNLS 105 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS----------EE-------------------EEESCC
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC----------cc-------------------cccCCC
Confidence 3568999999999999999998 99999999999999886421 22 899999
Q ss_pred cCCChHHHHHHHHhhcccccccC
Q psy633 91 KKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 91 ~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
..++++++.++|..|+.+.....
T Consensus 106 ~~~t~~~l~~~F~~~G~i~~v~i 128 (261)
T 3sde_A 106 PVVSNELLEQAFSQFGPVEKAVV 128 (261)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEe
Confidence 99999999999999998765444
No 270
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.7e-08 Score=69.96 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=37.5
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++||||||+|.+.+++.+|+. +++..++|+.|.|..+.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 689999999999999999998 8999999999999998764
No 271
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-08 Score=71.19 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=42.9
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.++.| +||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus 29 ~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 29 TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 5677766 89999999999999999999 899999999999999987653
No 272
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=8.9e-08 Score=67.01 Aligned_cols=48 Identities=33% Similarity=0.606 Sum_probs=43.1
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.|+.|+.+|+ ||||+|.+++++.+|++++++.|+|+.|.|..+.++..
T Consensus 37 ~v~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 37 SVVMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EEEECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEEEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 4588888887 99999999999999999999999999999999876654
No 273
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=7.7e-08 Score=67.77 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=39.3
Q ss_pred CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+++||||||+|.+.+++.+|++ +++..|+|++|.|..+.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 3789999999999999999997 999999999999999987643
No 274
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.57 E-value=5.4e-08 Score=74.44 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=42.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
+|+|+.| +||||||+|.+.+++.+|+. +++..|+|++|.|..+.++.
T Consensus 102 ~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 102 SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 4667666 79999999999999999998 99999999999999998763
No 275
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=7.2e-08 Score=69.48 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=41.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.++.+ ||||||+|.+.++|.+|+. +++..|+|+.|.|..+.++..
T Consensus 54 ~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 54 EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 4556554 8999999999999999997 899999999999999987654
No 276
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.1e-07 Score=67.20 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=36.2
Q ss_pred CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 12 GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 12 ~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+++||||||+|.+.++|.+|++. ...+.|++|.|..+.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence 58999999999999999999984 4557899999999886653
No 277
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.56 E-value=4.2e-08 Score=71.12 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=39.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
+|.|+++ + +||||||+|.+.++|.+|++ |+|..++||+|.|..+.
T Consensus 46 ~v~i~~~--~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 46 HIYVDKN--S--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp EEEECTT--C--TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEecC--C--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 4566544 2 69999999999999999998 99999999999998874
No 278
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.55 E-value=5e-08 Score=67.45 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=37.4
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++||||||+|.+++++.+|++ +++..++|++|.|..+...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 799999999999999999999 9999999999999988654
No 279
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.54 E-value=9e-08 Score=70.37 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=38.4
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
++||||||+|.+.++|.+|++ +++..++|+.|.|..+.++.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 789999999999999999997 89999999999999998764
No 280
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=6.8e-08 Score=70.43 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=40.1
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|+.| ||||||+|.+.++|.+|++ ++ +..|+||+|.|..|.++..
T Consensus 60 ~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 60 NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 5677765 7999999999999999998 65 5689999999999987643
No 281
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.52 E-value=1.2e-07 Score=68.17 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=36.8
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 8999999999999999998 899999999999999987643
No 282
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.51 E-value=9e-08 Score=81.16 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=48.3
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
++.|+.|+ +|+++|||||+|.+.++|.+|+. +++..++|++|.|..+.++..
T Consensus 214 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 214 FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 67888986 89999999999999999999999 999999999999999988765
No 283
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=9.2e-08 Score=67.62 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=37.6
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus 50 ~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 48999999999999999997 899999999999999987643
No 284
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.2e-07 Score=67.18 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=35.5
Q ss_pred cCeEEEEecChHHHHHHHh-c--CCceecCccceecCCCCCch
Q psy633 15 KGFGFVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~~a~~~~~ 54 (300)
||||||+|.+.++|.+|++ + ++..++||+|.|..|.++..
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 8999999999999999998 4 57889999999999986643
No 285
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.7e-07 Score=64.98 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=37.2
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
||||||+|.+.+++.+|++ +++..++|++|.|..+.++..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 7999999999999999998 999999999999999987654
No 286
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.9e-08 Score=68.89 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=41.4
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC-----ccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG-----SRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g-----~~~~v~~a~~~~~~ 55 (300)
+|.|+.| |||||+|.+.+++++|++ +++..|+| +.|.|..|.++...
T Consensus 44 ~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 44 YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 4566666 999999999999999999 99999999 99999999886543
No 287
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=8.3e-08 Score=69.80 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=39.1
Q ss_pred EEEeeeCCC---CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633 3 ASVMFDKNT---GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 51 (300)
Q Consensus 3 ~~~~~d~~t---~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~ 51 (300)
+.++.|+.| |++||||||+|.++++|++|++ + +.++|+.+.+..+.+
T Consensus 37 ~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 37 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYLCVSSPT 87 (114)
T ss_dssp EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEEEECCSS
T ss_pred EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEEeccCCC
Confidence 567788887 8999999999999999999998 5 457888887766543
No 288
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.48 E-value=9.6e-08 Score=67.24 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=35.4
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCc--eecCccceecCCCCCc
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSH--VLEGSRLSIQPSDSHN 53 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~--~~~g~~~~v~~a~~~~ 53 (300)
++||||||+|.+.++|.+|++ +++. .+.||+|.|..|.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 368999999999999999998 7665 4889999999987653
No 289
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.48 E-value=7.5e-08 Score=66.72 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=33.6
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+|.|++| +||||||+|.++++|+++. .....++|++|.|..|.++..
T Consensus 40 ~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 40 DVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp EEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC----
T ss_pred EEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcCCCCc
Confidence 4566664 8999999999999998543 224456799999999987643
No 290
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=7.1e-08 Score=67.35 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=38.6
Q ss_pred CccCeEEEEecChHHHHHHHh-cCC-ceecCccceecCCCCCch
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDS-HVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g~~~~v~~a~~~~~ 54 (300)
.+||||||+|.+.++|.+|++ +++ ..++|++|.|..+.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 379999999999999999998 999 999999999999987654
No 291
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.5e-07 Score=66.31 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=37.2
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceec--CccceecCCCCCch
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLE--GSRLSIQPSDSHNS 54 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~--g~~~~v~~a~~~~~ 54 (300)
||||||+|.+.++|++|++ +++..++ |++|.|..+.++..
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 8999999999999999999 9999999 99999999987643
No 292
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=1.4e-07 Score=67.96 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=35.6
Q ss_pred CccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCc
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~ 53 (300)
++||||||+|.+.++|.+|++ ++ +..|+||+|.|..|.++.
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 468999999999999999998 54 567999999999987654
No 293
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.46 E-value=2.1e-07 Score=63.95 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=33.5
Q ss_pred CccCeEEEEecChHHHHHHHhcCCceecCccceecC
Q psy633 13 LSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~ 48 (300)
++||||||+|.+.+++.+|+.+++..++|++|.|.+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 458999999999999999999999999999999875
No 294
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1.8e-07 Score=64.43 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=36.6
Q ss_pred CeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 16 GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 16 Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
|||||+|.+.++|.+|++ |++..+.||+|+|..|..+..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 999999999999999998 999999999999999987643
No 295
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.6e-07 Score=66.41 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=38.6
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
.+||||||+|.+.++|.+|+. +++..|+|++|.|..+.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 358999999999999999999 999999999999999987654
No 296
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.42 E-value=2e-07 Score=71.88 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=60.8
Q ss_pred CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC------ccceecCCCCCchhh--hhhhhhhhhhhhhh
Q psy633 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG------SRLSIQPSDSHNSQV--KKKIETKETASFSR 70 (300)
Q Consensus 1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g------~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~ 70 (300)
+++.|++|.. +++|||||+|.+.+++++|++ +++ ..++| +.............. .......
T Consensus 1 ~~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (158)
T 2kn4_A 1 MQYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMT------- 71 (158)
T ss_dssp CEEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCC-------
T ss_pred CcEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCC-------
Confidence 4678889865 699999999999999999996 443 22222 222222111111000 0001111
Q ss_pred hhhhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 71 MAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 71 ~~~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
..||++++..++++++.++|..|+.+.......
T Consensus 72 ------------~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~ 104 (158)
T 2kn4_A 72 ------------SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 104 (158)
T ss_dssp ------------EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC
T ss_pred ------------EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 238999999999999999999999876555433
No 297
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.41 E-value=2.2e-07 Score=65.41 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=36.5
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+||||||+|.+.++|.+|++ +++..++|++|.|..+.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 48999999999999999999 9999999999999998765
No 298
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=3.3e-07 Score=62.66 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=34.2
Q ss_pred ccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSD 50 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~ 50 (300)
+||||||+|.+.+++.+|++ + ++..++|++|.|..|+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 58999999999999999999 7 9999999999998763
No 299
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=1.4e-07 Score=68.10 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=35.5
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCcee-----cCccceecCCCCCc
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVL-----EGSRLSIQPSDSHN 53 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~-----~g~~~~v~~a~~~~ 53 (300)
.||||||+|.+.++|++|++ ++++.+ .|+++.|..+....
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 48999999999999999998 999998 78999998876543
No 300
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.39 E-value=2.4e-07 Score=66.83 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=36.5
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
+||||||+|.+.++|.+|++ +++..|+|+.|.|..+.++
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 78999999999999999997 9999999999999999754
No 301
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.7e-07 Score=64.77 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=37.3
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+||||||+|.+.+++.+|++ +++..+.|++|.|..+.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 48999999999999999999 899999999999999876543
No 302
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=1.2e-07 Score=67.25 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=38.0
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC--ceecCccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS--HVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~--~~~~g~~~~v~~a~~~~ 53 (300)
+|.|++| ||||||+|.+.++|.+|++ +++ ..|+||+|.|..|.++.
T Consensus 45 ~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 45 NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 4666654 5999999999999999998 664 56999999999987543
No 303
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=3.8e-07 Score=63.44 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=36.8
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~ 54 (300)
||||||+|.+.+++.+|++ ++++.++|+.|.|..+.++..
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 5699999999999999998 999999999999999987654
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.37 E-value=3.2e-07 Score=65.34 Aligned_cols=41 Identities=20% Similarity=0.461 Sum_probs=37.8
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
||||||+|.+.+++.+|++ ++++.|+|++|.|..+.++...
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 7899999999999999999 8999999999999999876543
No 305
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.37 E-value=2.2e-07 Score=66.29 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=35.2
Q ss_pred ccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~ 54 (300)
.||||||+|.+.++|.+|++ ++ +..++|++|.|..+.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 38999999999999999998 64 4569999999999986643
No 306
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.36 E-value=4.4e-07 Score=69.70 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=39.1
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhhh
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQVK 57 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~~ 57 (300)
++||||||+|.+.++|.+|++ +++..|.| ++|+|..+.++.-..+
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk 129 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK 129 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccccc
Confidence 478999999999999999999 99999965 9999999988754433
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=4.5e-07 Score=62.80 Aligned_cols=39 Identities=15% Similarity=0.417 Sum_probs=36.3
Q ss_pred cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 5699999999999999999 99999999999999998764
No 308
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=4.7e-07 Score=73.92 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=42.6
Q ss_pred eEEEeee----CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633 2 NASVMFD----KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d----~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~ 50 (300)
++.|+++ +.|+++|||+||+|.+.+++.+|+. ++|..++||+|.+..+.
T Consensus 158 ~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 158 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4667744 4566999999999999999999999 99999999999998764
No 309
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=4.7e-07 Score=63.47 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=42.2
Q ss_pred eE-EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633 2 NA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~-~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~ 53 (300)
++ .|+.|+.+|+ |||+|.+.+++.+|+. +++..|+|++|.|..|.++.
T Consensus 44 ~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 44 SCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp EEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred EEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 45 4788877765 9999999999999998 99999999999999998773
No 310
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.30 E-value=1.4e-06 Score=72.96 Aligned_cols=51 Identities=27% Similarity=0.478 Sum_probs=44.2
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceec---CccceecCCCCCc
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLE---GSRLSIQPSDSHN 53 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~---g~~~~v~~a~~~~ 53 (300)
+|.|+.| .||++||||||+|.+.++|.+|+. + ++..+. ||+|.|..+.+..
T Consensus 125 ~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 125 KAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 5789999 699999999999999999999999 6 555555 9999999988654
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=3.9e-07 Score=65.84 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=36.6
Q ss_pred CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
++||||||+|.+.++|.+|++ +++..++|++|.|..|...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 488999999999999999998 9999999999999988643
No 312
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=3.1e-07 Score=63.30 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=37.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~ 55 (300)
+|.|+.| +||||||+|.+.+++++++.. ...++|++|.|..+.++...
T Consensus 34 ~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 34 DVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp EEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCCC
T ss_pred EEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCCCC
Confidence 4555544 899999999999999876543 46679999999999887543
No 313
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=7.1e-07 Score=60.83 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=37.7
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
+++++.|+ +||+|.+.++|.+|++|++..++||.|+|+.+.|.
T Consensus 44 ~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 44 LIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp EEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred EEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 45666664 89999999999999999999999999999988753
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.25 E-value=7.1e-07 Score=64.88 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=35.8
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCcc-----ceecCCCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSR-----LSIQPSDSH 52 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~-----~~v~~a~~~ 52 (300)
+|.|+.| |||||+|.+.++|++|++ +++..|+|+. |+|..+.++
T Consensus 45 ~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 45 YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 4556555 999999999999999999 9999999999 666665554
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.23 E-value=1.4e-06 Score=64.34 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred ccCe-EEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhhhh
Q psy633 14 SKGF-GFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQVKK 58 (300)
Q Consensus 14 ~rGf-gfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~~~ 58 (300)
+||| |||+|.+.++|.+|++ ++|..|.| +.|+|..|+++.-..+.
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~ 112 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 112 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEe
Confidence 4788 9999999999999999 99999998 89999999877544443
No 316
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.21 E-value=1.1e-06 Score=72.07 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=35.5
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCcee------------cCccceecCCCCCch
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVL------------EGSRLSIQPSDSHNS 54 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~------------~g~~~~v~~a~~~~~ 54 (300)
+||||||+|.+.++|+.|++ |+++.| +|+.|.|+.|.+...
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 68999999999999999998 999999 999999999986644
No 317
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.12 E-value=1.5e-06 Score=66.37 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=68.9
Q ss_pred EEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ 81 (300)
Q Consensus 4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 81 (300)
.+..+ ..+.+|+++|+|.+.++|++|++ + ++..++| .+.+..+.++................ ...-..
T Consensus 4 al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~ 73 (150)
T 2i2y_A 4 KLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHR-------DSCPLD 73 (150)
T ss_dssp EEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCS-------SSSTTS
T ss_pred Eeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccc-------cCCCCC
Confidence 34444 45889999999999999999998 8 9999999 99999887643221110000000000 000011
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
...||++++..++++++.++|..|+.+.......
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 107 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR 107 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee
Confidence 2238999999999999999999999876555433
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.11 E-value=4.1e-06 Score=61.44 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=36.4
Q ss_pred Ce-EEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhh
Q psy633 16 GF-GFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQV 56 (300)
Q Consensus 16 Gf-gfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~ 56 (300)
|| |||+|.+.++|.+|++ ++|..|.| +.|+|..|.++.-..
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v 106 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNV 106 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCccee
Confidence 97 9999999999999999 99999988 689999998876433
No 319
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=5.4e-06 Score=56.77 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50 (300)
Q Consensus 2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~ 50 (300)
.++++.|+ +||+|.+.++|.+|+++++..++||.++|+.-.
T Consensus 53 lvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 53 LVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred EEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 56777775 999999999999999999999999999997643
No 320
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.25 E-value=0.00031 Score=60.68 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=30.8
Q ss_pred ccCeEEEEecChHHHHHHHh-cCCceec---Cc--cceecCCC
Q psy633 14 SKGFGFVTFQNKEAVDKVFS-TDSHVLE---GS--RLSIQPSD 50 (300)
Q Consensus 14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~--~~~v~~a~ 50 (300)
+||||||+|.+.++|++|++ +||..+- |+ .+.+..+.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 68999999999999999999 9999873 45 56666653
No 321
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=95.84 E-value=0.032 Score=44.32 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=60.9
Q ss_pred hHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC--CCCccchh------------hhHHHHHHHHcCCCCHHH
Q psy633 77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPSWYNME------------AKSKYNAWNSLGQMAKSE 142 (300)
Q Consensus 77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~~~------------~~~k~~aw~~~~~~~~~~ 142 (300)
--|.++...+-.-.-.++.++...+.++.-|+..|+++.. .|++++.. .+.-+..|.++.+++.++
T Consensus 20 l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~~~~g~s~~~ 99 (206)
T 1mix_A 20 LLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIE 99 (206)
T ss_dssp HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHHHccCCCHHH
Confidence 3566666655544457899999999999999999998764 34443332 455688999999999999
Q ss_pred HHHHHHHHHHhh
Q psy633 143 AMSKYIALLNEV 154 (300)
Q Consensus 143 a~~~yi~~v~~l 154 (300)
|+..|++++..+
T Consensus 100 A~~~yL~~~~~l 111 (206)
T 1mix_A 100 AKVRYVKLARSL 111 (206)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999999876
No 322
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.06 E-value=0.076 Score=38.24 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=26.5
Q ss_pred eEEEEecC-hHHHHHHHh-c--CCceecCccceecCCC
Q psy633 17 FGFVTFQN-KEAVDKVFS-T--DSHVLEGSRLSIQPSD 50 (300)
Q Consensus 17 fgfv~f~~-~~~~~~a~~-~--~~~~~~g~~~~v~~a~ 50 (300)
+|||.|.+ +++|..|+. + .+..|+|..+.+....
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 59999999 788888887 5 4677888777776544
No 323
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=92.98 E-value=0.06 Score=39.64 Aligned_cols=74 Identities=7% Similarity=-0.043 Sum_probs=28.9
Q ss_pred eEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccCCCh
Q psy633 17 FGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDS 95 (300)
Q Consensus 17 fgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~~~~ 95 (300)
+.|..|.+...+..|+. +++....|+.- .....+. ........+ ||++++..+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~----~~~~~~~~l-------------------~V~nLp~~~te 61 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP----PDVEGMTSL-------------------KVDNLTYRTSP 61 (135)
T ss_dssp ------------------------------CCSCCSC----SSGGGCCCE-------------------EEECCCSSCHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC----CCCCCCCEE-------------------EEeCCCCCCCH
Confidence 45666777777777777 66655555431 1111111 111111222 89999999999
Q ss_pred HHHHHHHHhhcccccccCC
Q psy633 96 STLLKFYALYKQATVGQCN 114 (300)
Q Consensus 96 ~~~~~~~~~~k~~~~g~~~ 114 (300)
+++.++|..|+.+......
T Consensus 62 ~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp HHHHHHHGGGSCCSEEECC
T ss_pred HHHHHHHHhcCCEEEEEEE
Confidence 9999999999987655443
No 324
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.27 E-value=0.16 Score=35.17 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=34.1
Q ss_pred CeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633 16 GFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS 54 (300)
Q Consensus 16 Gfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~ 54 (300)
+=|+|+|.+.+.++++++...|.|+|-++.|....++..
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCc
Confidence 457999999999999998889999999999988776643
No 325
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.16 Score=35.55 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=28.8
Q ss_pred eEEEEecChHHHHHHH-hcCCceecCccceecCC
Q psy633 17 FGFVTFQNKEAVDKVF-STDSHVLEGSRLSIQPS 49 (300)
Q Consensus 17 fgfv~f~~~~~~~~a~-~~~~~~~~g~~~~v~~a 49 (300)
=++|+|.|...|.+|. .++|.+|+||+|++...
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred ceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 4899999998888886 59999999999998653
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=86.19 E-value=0.54 Score=32.79 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=25.3
Q ss_pred hhcccccC-CChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKK-LDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++.. ++++++.++|..|+.+.....
T Consensus 31 ~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 31 FIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp EECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 89999999 999999999999998765443
No 327
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=84.96 E-value=0.3 Score=37.06 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=27.0
Q ss_pred hhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..||++|+..++++++..+|..|+.+......
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 105 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN 105 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEE
Confidence 34999999999999999999999987655543
No 328
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=84.85 E-value=0.8 Score=33.16 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=33.4
Q ss_pred cCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633 15 KGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~ 52 (300)
.++-.|+|+++.+|.+|+..+|..|+|..|-|.+..+.
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHH
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHH
Confidence 35679999999999999999999999999999887543
No 329
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.32 E-value=0.98 Score=31.27 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=31.2
Q ss_pred EEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633 18 GFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 52 (300)
Q Consensus 18 gfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~ 52 (300)
-.|.|.++++|.+|-. +++..++|+.++|-.+++-
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3689999999999977 9999999999999998854
No 330
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=81.94 E-value=0.6 Score=34.41 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=21.5
Q ss_pred hhcccccCCChHHHHHHHHhhc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYK 106 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k 106 (300)
||++|+...+++++.++|..|+
T Consensus 50 fV~nLp~~~te~dL~~~F~~~G 71 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFSPLN 71 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHCSCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcC
Confidence 8999999999999999999999
No 331
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=81.06 E-value=1.2 Score=29.83 Aligned_cols=30 Identities=13% Similarity=-0.082 Sum_probs=25.4
Q ss_pred hhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYK-QATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~ 113 (300)
.||++++..++++++.++|..|+ .+.....
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i 34 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRL 34 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCCSBCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE
Confidence 38999999999999999999998 6655444
No 332
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.40 E-value=0.78 Score=31.99 Aligned_cols=31 Identities=6% Similarity=-0.043 Sum_probs=27.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++++..++++++.++|..|+.+....+..
T Consensus 20 fV~nLp~~vte~dL~~lF~~fG~V~~v~i~~ 50 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 50 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHHHCCEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 8999999999999999999999887665443
No 333
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=78.13 E-value=1.2 Score=29.69 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=27.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++++..++++++.++|+.|+.+.......
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~ 45 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 45 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECCS
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 8999999999999999999999877655443
No 334
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=78.07 E-value=1.1 Score=30.97 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 25 ~V~NLp~~~te~~L~~lF~~fG~V~~v~i 53 (100)
T 3r27_A 25 HIRGLIDGVVEADLVEALQEFGPISYVVV 53 (100)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 89999999999999999999998875544
No 335
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=77.84 E-value=0.86 Score=31.01 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=25.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+....+
T Consensus 13 fV~nL~~~~tee~L~~~F~~~G~i~v~~v 41 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALSPYASLAVNNI 41 (95)
T ss_dssp EEESCCTTCCHHHHHHHSTTTCCCCGGGE
T ss_pred EEeCCCCcCCHHHHHHHHHhhCCccEEEE
Confidence 89999999999999999999997554443
No 336
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=77.66 E-value=2.5 Score=32.88 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=26.3
Q ss_pred hhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
+.||++++...+++++.++|+.|+.+.....
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 3499999999999999999999998765443
No 337
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=77.12 E-value=0.58 Score=32.09 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=27.7
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
...||++++..++++++.++|..|+.+......
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 52 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLI 52 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEee
Confidence 345999999999999999999999987755443
No 338
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=76.79 E-value=1.2 Score=31.58 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=26.2
Q ss_pred hhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
..||++++..++++++.++|..|+.+.....
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 68 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITI 68 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 3499999999999999999999997764443
No 339
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=74.12 E-value=2.2 Score=26.95 Aligned_cols=30 Identities=3% Similarity=0.148 Sum_probs=25.8
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++...+++++.++|..|+.+......
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 32 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 32 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCCSEECCC
T ss_pred EEecCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 789999999999999999999987655543
No 340
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.33 E-value=1.6 Score=31.20 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 35 fVgNLp~~vte~dL~~lF~~fG~V~~v~i 63 (119)
T 2ad9_A 35 HIRKLPIDVTEGEVISLGLPFGKVTNLLM 63 (119)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCCCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 99999999999999999999998875544
No 341
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=73.27 E-value=1.6 Score=30.60 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=26.0
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i 37 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKV 37 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 399999999999999999999998765443
No 342
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=73.13 E-value=2.6 Score=26.59 Aligned_cols=29 Identities=3% Similarity=0.181 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+.....
T Consensus 3 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~i 31 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFGGFGEVESIEL 31 (75)
T ss_dssp EESCCCSSCCHHHHHHHHHHHSCCSEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 78999999999999999999998765444
No 343
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=71.98 E-value=1.6 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
+|+++....++++++++|..|+.+..-....
T Consensus 11 ~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 11 LLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp EEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred EEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 8999999999999999999999887655433
No 344
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.84 E-value=1.7 Score=30.10 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=25.7
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nLp~~~te~~L~~~F~~fG~V~~v~i 47 (104)
T 1wex_A 19 HVRGLCESVVEADLVEALEKFGTICYVMM 47 (104)
T ss_dssp EEESCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 89999999999999999999998775443
No 345
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.90 E-value=2 Score=28.26 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=26.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 9 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~ 38 (88)
T 1wf0_A 9 FVGRCTGDMTEDELREFFSQYGDVMDVFIP 38 (88)
T ss_dssp EEESCCSSSCHHHHHHHSTTTSCCCEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCeeEEEEe
Confidence 899999999999999999999987655543
No 346
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.03 E-value=2.1 Score=29.41 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=26.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++...+++++.++|..|+.+......
T Consensus 15 fV~~Lp~~~te~~L~~~F~~~G~v~~v~i~ 44 (103)
T 1s79_A 15 YIKGFPTDATLDDIKEWLEDKGQVLNIQMR 44 (103)
T ss_dssp EEECCCTTCCHHHHHHHHHTSSCEEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHhhcCCEEEEEEE
Confidence 899999999999999999999987654443
No 347
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=68.53 E-value=3.2 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhc-ccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYK-QATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~~ 114 (300)
||++++..++++++.++|..|+ .+....+.
T Consensus 32 ~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp EEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred EEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 8999999999999999999999 66655543
No 348
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=67.96 E-value=2.6 Score=27.93 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=24.2
Q ss_pred hhhhcccccCCChHHHHHHHHhhc--ccccc
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYK--QATVG 111 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k--~~~~g 111 (300)
+.||++++...+++++.++|..|+ .+...
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v 33 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEI 33 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEE
Confidence 348999999999999999999999 55433
No 349
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.06 E-value=1.5 Score=30.13 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=25.7
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nLp~~~te~~L~~~F~~fG~v~~v~i 47 (101)
T 2cq1_A 19 HIRKLPGEVTETEVIALGLPFGKVTNILM 47 (101)
T ss_dssp EEESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999998875443
No 350
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.18 E-value=18 Score=29.80 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=53.2
Q ss_pred hHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCcc------chh-------hhHHH-----HHHHHcC
Q psy633 77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWY------NME-------AKSKY-----NAWNSLG 136 (300)
Q Consensus 77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~------~~~-------~~~k~-----~aw~~~~ 136 (300)
--|.++..-+-.-.-.++.++...|.++.-|+..|+.+... ++.+ ... ....| ..|.++.
T Consensus 98 l~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~ 177 (294)
T 1ef1_A 98 LFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHR 177 (294)
T ss_dssp HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHcc
Confidence 34555554443333467889999999998899989876542 3322 111 02234 4578999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy633 137 QMAKSEAMSKYIALLNEV 154 (300)
Q Consensus 137 ~~~~~~a~~~yi~~v~~l 154 (300)
+++..+|+..|++++..+
T Consensus 178 g~s~~~A~~~yL~~~~~l 195 (294)
T 1ef1_A 178 GMLREDAVLEYLKIAQDL 195 (294)
T ss_dssp TCCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHccc
Confidence 999999999999999864
No 351
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=66.15 E-value=3.1 Score=27.23 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=26.7
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
...||++++...+++++.++|..|+.+.....
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 38 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTI 38 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 34589999999999999999999998765443
No 352
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.10 E-value=1.1 Score=30.95 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=27.2
Q ss_pred hhccccc-CCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVK-KLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~-~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++++. .++++++.++|..|+.+....+..
T Consensus 19 ~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~ 50 (102)
T 1x4d_A 19 HIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50 (102)
T ss_dssp EEESCCCSSSHHHHHHTTTGGGSCEEEEEECS
T ss_pred EEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc
Confidence 8999999 999999999999999987665543
No 353
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=64.95 E-value=26 Score=27.51 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=52.5
Q ss_pred hHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCccc-----------hhhhH-HHHHHHHcCCCCHHH
Q psy633 77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWYN-----------MEAKS-KYNAWNSLGQMAKSE 142 (300)
Q Consensus 77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~~-----------~~~~~-k~~aw~~~~~~~~~~ 142 (300)
--|.++..-+-.-.-.++.++...|.++.=|+..|+.+... ++... ..... =...|.++.+++.++
T Consensus 31 l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~~~~g~s~~e 110 (222)
T 4f7g_A 31 LLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIE 110 (222)
T ss_dssp HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHHhccCCCHHH
Confidence 34555554443323467889999999998899888876532 22111 11111 245688999999999
Q ss_pred HHHHHHHHHHhh
Q psy633 143 AMSKYIALLNEV 154 (300)
Q Consensus 143 a~~~yi~~v~~l 154 (300)
|+..|++++..+
T Consensus 111 A~~~yL~~~~~l 122 (222)
T 4f7g_A 111 AKVRYVKLARSL 122 (222)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhc
Confidence 999999999876
No 354
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.90 E-value=3.7 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 41 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFSAYGPLSELHYP 41 (99)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEE
Confidence 899999999999999999999987655443
No 355
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=64.85 E-value=3.9 Score=27.86 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=26.6
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++++..++++++.++|..|+.+.......
T Consensus 17 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 47 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 47 (106)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCCCEEECCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 8999999999999999999999876555433
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=64.71 E-value=2.2 Score=37.89 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=27.9
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.+.||++|+..+++++|.++|..|+.+....+.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~ 135 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMV 135 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEee
Confidence 356999999999999999999999988755543
No 357
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.37 E-value=3.5 Score=27.27 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 14 ~V~nLp~~~t~~~l~~~F~~~G~v~~v~~ 42 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFEEYGPVIECDI 42 (92)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCCCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765443
No 358
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=63.86 E-value=3.4 Score=26.94 Aligned_cols=30 Identities=7% Similarity=0.255 Sum_probs=25.9
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 36 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 36 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 389999999999999999999998765444
No 359
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.74 E-value=2.9 Score=26.49 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=25.3
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++...+++++.++|..|+.+.....
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i 32 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLV 32 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 378999999999999999999987764443
No 360
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=63.61 E-value=3.6 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+.....
T Consensus 11 ~V~nl~~~~~~~~l~~~f~~~G~i~~v~i 39 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFIPFGDITDIQI 39 (85)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred EEECCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 89999999999999999999998765544
No 361
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=62.87 E-value=3.3 Score=27.04 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 15 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 43 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTI 43 (87)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 89999999999999999999998765443
No 362
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.83 E-value=3.3 Score=28.54 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=26.8
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNID 116 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~ 116 (300)
||++|+..++++++.++|..|+.+....+..+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 89999999999999999999998765554333
No 363
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.91 E-value=3.8 Score=27.01 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 13 ~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 41 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFERRGRVIECDV 41 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHcCCCEEEEEE
Confidence 89999999999999999999998765443
No 364
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=61.88 E-value=2.7 Score=29.25 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=25.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+....+
T Consensus 10 fV~nL~~~~te~~L~~~F~~~G~i~~v~i 38 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCRKYGEVEEVEI 38 (110)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 89999999999999999999998775544
No 365
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=61.85 E-value=4.4 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 27 fV~nL~~~~te~~L~~~F~~~G~v~~ 52 (131)
T 2m2b_A 27 ILRNLNPHSTMDSILGALAPYAVLSS 52 (131)
T ss_dssp EECSCCTTCCSHHHHHHHGGGCCCCT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 99999999999999999999998865
No 366
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.53 E-value=3.8 Score=28.44 Aligned_cols=29 Identities=3% Similarity=-0.063 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 14 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i 42 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFSRFGSLGRVLL 42 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999998765443
No 367
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=61.03 E-value=3.6 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=25.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+.....
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~~G~i~~~~i 33 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKDFPSYLSGHV 33 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 89999999999999999999997765443
No 368
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.89 E-value=4 Score=26.86 Aligned_cols=28 Identities=7% Similarity=0.271 Sum_probs=24.7
Q ss_pred hhcccccCCChHHHHHHHHhhccccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
||++++..++++++.++|..|+.+....
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 39 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFEQYGKVLECD 39 (90)
T ss_dssp EEESCCSSCCHHHHHHHHHTSSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEE
Confidence 8999999999999999999999766443
No 369
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.72 E-value=4.7 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
||++++..++++++.++|..|+.+.......
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (105)
T 1x5u_A 19 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPK 49 (105)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCB
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 8999999999999999999999876554433
No 370
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.69 E-value=4.6 Score=27.26 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 16 ~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 45 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFSKYGQISEVVVV 45 (102)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCCCEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 899999999999999999999987655443
No 371
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.57 E-value=4.7 Score=27.69 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=26.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (111)
T 1x4h_A 19 FIRNLSFDSEEEALGEVLQQFGDLKYVRVV 48 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 899999999999999999999987655543
No 372
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.51 E-value=4.3 Score=27.48 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=25.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 17 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 46 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFEKYGRVGDVYIP 46 (103)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 899999999999999999999987654443
No 373
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.50 E-value=4.7 Score=27.46 Aligned_cols=30 Identities=0% Similarity=0.124 Sum_probs=26.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFSTFGELKTVRLP 48 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred EEeCCCCcCCHHHHHHHHHccCCeEEEEEe
Confidence 899999999999999999999987655443
No 374
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=60.49 E-value=4.4 Score=26.33 Aligned_cols=30 Identities=7% Similarity=0.245 Sum_probs=25.5
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i 38 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRISDARV 38 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence 389999999999999999999997765443
No 375
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.32 E-value=5 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=26.1
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 16 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 45 (102)
T 2cqb_A 16 YVGGLAEEVDDKVLHAAFIPFGDITDIQIP 45 (102)
T ss_dssp EEESCCSSCCHHHHHHHHTTTSCCCCEECC
T ss_pred EEeCCCCCCCHHHHHHHhhccCCEEEEEEE
Confidence 899999999999999999999987655543
No 376
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.25 E-value=4.3 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.9
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 30 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 59 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVV 59 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTSSCCCSEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 389999999999999999999998765444
No 377
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.03 E-value=4.4 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (103)
T 2cqi_A 19 YVGNLSRDVTEVLILQLFSQIGPCKSCKM 47 (103)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEeCCCccCCHHHHHHHHHhcCCEeEEEE
Confidence 89999999999999999999998765443
No 378
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.98 E-value=4.3 Score=26.27 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 16 ~V~~l~~~~t~~~l~~~f~~~G~i~~~~~ 44 (85)
T 2ytc_A 16 YVGGLGDTITETDLRNHFYQFGEIRTITV 44 (85)
T ss_dssp EEECCTTTSCHHHHHHHHHTTSCEEEEEE
T ss_pred EEcCCCCCCCHHHHHHHHHhCCCEeEEEE
Confidence 89999999999999999999998665443
No 379
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.95 E-value=3.6 Score=27.37 Aligned_cols=26 Identities=12% Similarity=0.433 Sum_probs=24.1
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 12 ~V~nl~~~~t~~~l~~~F~~~G~v~~ 37 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFLAFGPVAS 37 (94)
T ss_dssp EEECCCTTCCHHHHHHHGGGTSCEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEE
Confidence 89999999999999999999998764
No 380
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=59.95 E-value=4.2 Score=27.61 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=24.9
Q ss_pred hhcccccCCChHHHHHHHHhhccccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
||++++..++++++.++|..|+.+....
T Consensus 15 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~ 42 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFSQFGKLERVK 42 (103)
T ss_dssp EEECCCTTCCHHHHHHHHHHHSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 8999999999999999999999876544
No 381
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.92 E-value=4.8 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=23.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~G~i~ 37 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFATMGETV 37 (99)
T ss_dssp EECSCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 8999999999999999999999776
No 382
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.65 E-value=4.4 Score=27.09 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~ 50 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFDRFGSIRTIDHV 50 (97)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEe
Confidence 899999999999999999999987655443
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=59.53 E-value=8.5 Score=27.30 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=30.8
Q ss_pred cCeEEEEecChHHHHHHHhcCCceecC-ccceecCCC
Q psy633 15 KGFGFVTFQNKEAVDKVFSTDSHVLEG-SRLSIQPSD 50 (300)
Q Consensus 15 rGfgfv~f~~~~~~~~a~~~~~~~~~g-~~~~v~~a~ 50 (300)
..+=.|.|.+..+|++|+..|+..|+| -.|-|++..
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 458899999999999999999999985 667777654
No 384
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.46 E-value=4.7 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 26 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~i 54 (109)
T 1x4a_A 26 YVGNLPPDIRTKDIEDVFYKYGAIRDIDL 54 (109)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765443
No 385
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.40 E-value=4.5 Score=27.06 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=25.5
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 37 (98)
T 2cpf_A 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTI 37 (98)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 389999999999999999999997754443
No 386
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.33 E-value=4.3 Score=27.04 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.8
Q ss_pred hhcccccCCChHHHHHHHHhhcccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
||++++..++++++.++|..|+.+...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~v~~~ 45 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLVQYGVVESC 45 (96)
T ss_dssp EEEEECSSSCHHHHHHHHHHHSCEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHhcCCeEEE
Confidence 899999999999999999999987655
No 387
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=59.24 E-value=5.3 Score=26.63 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=26.1
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.||++++..++++++.++|..|+.+......
T Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 35 (96)
T 2x1f_A 5 VYLGSIPYDQTEEQILDLCSNVGPVINLKMM 35 (96)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999977655443
No 388
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.19 E-value=5 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
.||++++..++++++.++|..|+.+...
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~~ 35 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSAFGVILQT 35 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 3899999999999999999999987544
No 389
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.97 E-value=5.3 Score=26.69 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=26.6
Q ss_pred hhhcccccCCChHHHH----HHHHhhcccccccCCC
Q psy633 84 DYLPSLVKKLDSSTLL----KFYALYKQATVGQCNI 115 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~----~~~~~~k~~~~g~~~~ 115 (300)
.||++++..++++++. ++|..|+.+.......
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~ 47 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP 47 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe
Confidence 3899999999999999 9999999876555443
No 390
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.82 E-value=4.9 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=23.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 23 ~V~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 23 YVGNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEeCCCCcCcHHHHHHHHHhcCCEE
Confidence 8999999999999999999999874
No 391
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=58.74 E-value=4.9 Score=27.08 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=25.7
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 32 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWI 32 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 389999999999999999999998765444
No 392
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.67 E-value=5.2 Score=27.18 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 20 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i 48 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFSQYGEVVDCVI 48 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999997765443
No 393
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.50 E-value=5.2 Score=26.45 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=22.1
Q ss_pred hhcccccCCChHHHHHHHHhhcc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
||++++..++++++.++|..|+.
T Consensus 12 ~V~nLp~~~t~~~l~~~F~~~G~ 34 (93)
T 2cqh_A 12 YIGNLSPAVTADDLRQLFGDRKL 34 (93)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC
Confidence 89999999999999999999997
No 394
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=58.27 E-value=4.2 Score=28.23 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 29 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 57 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFMPFGNVVSAKV 57 (115)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765444
No 395
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=58.21 E-value=4.9 Score=27.00 Aligned_cols=26 Identities=4% Similarity=0.212 Sum_probs=24.3
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 17 ~V~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 17 FVQGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCEee
Confidence 89999999999999999999998765
No 396
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=57.97 E-value=5.1 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=25.6
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 19 l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i 48 (95)
T 2ywk_A 19 VFVGNLEARVREEILYELFLQAGPLTKVTI 48 (95)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 389999999999999999999997765443
No 397
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=57.93 E-value=5.1 Score=26.35 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=25.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 12 ~V~nlp~~~t~~~l~~~f~~~G~v~~~~i 40 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFNECGHVLYADI 40 (92)
T ss_dssp EECSCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999987664443
No 398
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.90 E-value=5.1 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFSTFGEVLMVQV 47 (103)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765444
No 399
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.59 E-value=5.2 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 49 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFEGFGDIEEAVV 49 (116)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeeEEEE
Confidence 89999999999999999999998765444
No 400
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=57.57 E-value=3.4 Score=31.25 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=25.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||+++...++++++.++|..|+.+.....
T Consensus 50 ~VgNL~~~vted~L~~~Fs~fG~V~~V~i 78 (164)
T 1sjr_A 50 IVENLFYPVTLDVLHQIFSKFGTVLKIIT 78 (164)
T ss_dssp EECSCCSCCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEeCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999999998776554
No 401
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=57.39 E-value=5.4 Score=26.83 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=25.3
Q ss_pred hhhcccccCCChHHHHHHHHhhccccccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
.||++++..++++++.++|..|+.+....
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~ 58 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFILDFK 58 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCSEEE
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEEEEE
Confidence 48999999999999999999999876444
No 402
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=57.38 E-value=4.2 Score=28.40 Aligned_cols=30 Identities=7% Similarity=-0.097 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||.+|+..++++++.++|..|+.+....+.
T Consensus 20 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 49 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMREAGDVCYADVY 49 (115)
T ss_dssp EEEECCSSCCTTHHHHHHGGGSCEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 899999999999999999999987655543
No 403
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=57.29 E-value=4.9 Score=27.75 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=26.1
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 28 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i 57 (109)
T 2rs2_A 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLV 57 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHccCCeEEEEE
Confidence 489999999999999999999998765444
No 404
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.17 E-value=2.3 Score=29.97 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.9
Q ss_pred hhcccccC-CChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKK-LDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++.. ++++++.++|..|+.+....+
T Consensus 29 ~V~NLp~~~~te~~L~~lF~~fG~V~~v~i 58 (112)
T 1x4f_A 29 HLSNLPHSGYSDSAVLKLAEPYGKIKNYIL 58 (112)
T ss_dssp EEESCCCSSCCSHHHHTTTTTTSCCSEEEE
T ss_pred EEeCCCCccCCHHHHHHHHHhcCCEEEEEE
Confidence 89999998 999999999999998876554
No 405
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.17 E-value=4 Score=28.43 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=23.8
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 12 fVgnLp~~~te~~L~~~F~~~G~i~ 36 (114)
T 2dnl_A 12 FVGGLPPDIDEDEITASFRRFGPLV 36 (114)
T ss_dssp EEECCCTTCCHHHHHHHTTTTCCCC
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCEE
Confidence 8999999999999999999999877
No 406
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=57.04 E-value=5.1 Score=31.37 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=27.9
Q ss_pred hhhcccc-cCCChHHHHHHHHhhcccccccCCCC
Q psy633 84 DYLPSLV-KKLDSSTLLKFYALYKQATVGQCNID 116 (300)
Q Consensus 84 ~~v~~~~-~~~~~~~~~~~~~~~k~~~~g~~~~~ 116 (300)
.||++++ ..++++++.++|..|+.+.......+
T Consensus 7 l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~ 40 (205)
T 3tyt_A 7 LMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS 40 (205)
T ss_dssp EEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC
Confidence 4899999 79999999999999998876655443
No 407
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.88 E-value=4.4 Score=27.18 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 14 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 42 (99)
T 2dgs_A 14 FVGGIPHNCGETELREYFKKFGVVTEVVM 42 (99)
T ss_dssp EEESCCSSCCHHHHHHHHSSSSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999997765444
No 408
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=56.79 E-value=18 Score=30.03 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred HHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC--CCCccc-----hhhhHHH-----HHHHHcCCCCHHHHHHH
Q psy633 79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPSWYN-----MEAKSKY-----NAWNSLGQMAKSEAMSK 146 (300)
Q Consensus 79 F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~-----~~~~~k~-----~aw~~~~~~~~~~a~~~ 146 (300)
|.++..-+-.-.-.++.++...|.++.=|+..|+.+.. .|+.+. +.....| ..|.++.+++..+|+..
T Consensus 114 ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~ 193 (296)
T 3qij_A 114 CLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLE 193 (296)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 44554444333345788999999998889988887532 222221 1122333 45889999999999999
Q ss_pred HHHHHHhh
Q psy633 147 YIALLNEV 154 (300)
Q Consensus 147 yi~~v~~l 154 (300)
|+++++.+
T Consensus 194 yL~~a~~l 201 (296)
T 3qij_A 194 FLENAKKL 201 (296)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcc
Confidence 99999875
No 409
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=56.51 E-value=5.2 Score=26.72 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=25.1
Q ss_pred hhhccccc-CCChHHHHHHHHhhccccccc
Q psy633 84 DYLPSLVK-KLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 84 ~~v~~~~~-~~~~~~~~~~~~~~k~~~~g~ 112 (300)
.||++++. .++++++.++|..|+.+....
T Consensus 13 l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~ 42 (96)
T 2kvi_A 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQIN 42 (96)
T ss_dssp EEEESSTTSCCCHHHHHHHHTTTCCCCEEE
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEE
Confidence 38999998 999999999999999776544
No 410
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=56.43 E-value=30 Score=28.83 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=52.3
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCccc---h---h-------hhHHH-----HHHHHcCC
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWYN---M---E-------AKSKY-----NAWNSLGQ 137 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~~---~---~-------~~~k~-----~aw~~~~~ 137 (300)
-|.++..-+-.-.-.++.++...|.++.-|+..|+.+... |+.+. + . ....| ..|.++.+
T Consensus 119 ~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g 198 (314)
T 1h4r_A 119 FFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRG 198 (314)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCC
Confidence 4455554443323357899999999999999999876542 33211 1 0 01233 45889999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy633 138 MAKSEAMSKYIALLNEV 154 (300)
Q Consensus 138 ~~~~~a~~~yi~~v~~l 154 (300)
++.++|+..|++++..+
T Consensus 199 ~s~~eA~~~yL~~~~~l 215 (314)
T 1h4r_A 199 RARDEAEMEYLKIAQDL 215 (314)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999999775
No 411
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=56.42 E-value=4.7 Score=27.47 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 33 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 61 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFAEFGTLKKAAV 61 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998755443
No 412
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=56.18 E-value=6.5 Score=26.94 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=26.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 30 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 59 (110)
T 1oo0_B 30 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLN 59 (110)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 899999999999999999999987655443
No 413
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.03 E-value=5.6 Score=26.29 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 47 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFSKYGPIADVSI 47 (95)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 89999999999999999999997765443
No 414
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.02 E-value=5.9 Score=27.90 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=24.9
Q ss_pred hh--cccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YL--PSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v--~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
|| .++....+++++.++|..|+.+.....
T Consensus 29 ~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i 59 (114)
T 2cq2_A 29 VVANGGLGNGVSRNQLLPVLEKCGLVDALLM 59 (114)
T ss_dssp EEETCTGGGTCCHHHHHHHHHHHSCEEEEEC
T ss_pred EEECCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89 669999999999999999998765443
No 415
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=55.93 E-value=4.8 Score=29.10 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||+++...++++++.++|+.|+.+.....
T Consensus 32 ~V~NL~~~vte~~L~~lFs~yG~V~~V~i 60 (130)
T 3zzy_A 32 IVENLFYPVTLDVLHQIFSKFGTVLKIIT 60 (130)
T ss_dssp EEESCCSCCCHHHHHHHHTTSSCEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHhCcCCEEEEEE
Confidence 79999999999999999999998775443
No 416
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.82 E-value=5.8 Score=26.79 Aligned_cols=30 Identities=3% Similarity=0.012 Sum_probs=25.7
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i 40 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRL 40 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHTTSCCSEEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeeEEEE
Confidence 389999999999999999999997765443
No 417
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.80 E-value=5.2 Score=27.68 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=26.7
Q ss_pred hhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
..||++++..++++++.++|..|+.+......
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 58 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRII 58 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEE
Confidence 34899999999999999999999977654443
No 418
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.54 E-value=4.5 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 20 ~V~nlp~~~t~~~l~~~f~~~G~v~~v~i 48 (94)
T 2e5h_A 20 YVSNLPFSLTNNDLYRIFSKYGKVVKVTI 48 (94)
T ss_dssp EEESCCTTSCHHHHHHHTTTTSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765444
No 419
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=55.46 E-value=5.7 Score=27.36 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 35 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i 63 (108)
T 2jvo_A 35 FVRPFPLDVQESELNEIFGPFGPMKEVKI 63 (108)
T ss_dssp EECSSCTTCCHHHHHHHHTTTSCCCEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999997765443
No 420
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.33 E-value=5.2 Score=26.50 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 9 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 37 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFEPFGKIDNIVL 37 (95)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence 89999999999999999999997765444
No 421
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=55.23 E-value=6 Score=27.65 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=25.7
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 10 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 39 (116)
T 2fy1_A 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLL 39 (116)
T ss_dssp EEEECCTTTCCHHHHHHHHHTSSCCSEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 389999999999999999999998765443
No 422
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=55.17 E-value=5.2 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.238 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~i 47 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQPFGVIDECTV 47 (105)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999997765443
No 423
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=55.06 E-value=6.5 Score=27.71 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=26.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++.++|..|+.+......
T Consensus 26 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 55 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFAEYGEIKNIHLN 55 (126)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 899999999999999999999987755543
No 424
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=54.93 E-value=6.2 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=25.1
Q ss_pred hhccccc-CCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVK-KLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~-~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++. .++++++.++|..|+.+.....
T Consensus 26 ~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 26 FIGNLPLKNVSKEDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp EEESCCSSCCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 8999998 9999999999999998765443
No 425
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=54.92 E-value=6.1 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 41 (102)
T 2xs2_A 13 FVGGIDVRMDETEIRSFFARYGSVKEVKI 41 (102)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999997765443
No 426
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.87 E-value=6.3 Score=28.08 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=23.0
Q ss_pred hhhcccccCCChHHHHHHHHhhccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
.||++|+...+++++.++|..|+.+
T Consensus 26 v~V~nLp~~~te~dl~~~F~~~g~v 50 (123)
T 2dha_A 26 VRMRGLPFTATAEEVVAFFGQHCPI 50 (123)
T ss_dssp EEECSCCTTCCHHHHHHHHHTTSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCc
Confidence 4899999999999999999999865
No 427
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.23 E-value=5.9 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=26.4
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.||++++..++++++.++|..|+.+......
T Consensus 28 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~ 58 (109)
T 1x4g_A 28 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 58 (109)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHSCEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 4899999999999999999999987655443
No 428
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.12 E-value=5.2 Score=27.05 Aligned_cols=29 Identities=3% Similarity=0.124 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~~G~v~~v~i 47 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFGQFGKILDVEI 47 (103)
T ss_dssp EEESCCTTCCHHHHHHHGGGTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999997765443
No 429
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.06 E-value=5.6 Score=27.40 Aligned_cols=29 Identities=3% Similarity=0.124 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 33 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i 61 (109)
T 2err_A 33 HVSNIPFRFRDPDLRQMFGQFGKILDVEI 61 (109)
T ss_dssp EEESCCTTCCHHHHHHHGGGTCCCSCEEE
T ss_pred EEECCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999998765443
No 430
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.96 E-value=5.6 Score=26.70 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 21 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i 49 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICKAHGTVKDLRL 49 (100)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999997765443
No 431
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=53.60 E-value=6.6 Score=26.65 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 27 ~V~nlp~~~t~~~l~~~f~~~G~i~~v~i 55 (106)
T 1p27_B 27 FVTGVHEEATEEDIHDKFAEYGEIKNIHL 55 (106)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHhccCCeEEEEE
Confidence 89999999999999999999997765444
No 432
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.53 E-value=5.4 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHh-hcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYAL-YKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~-~k~~~~g~~ 113 (300)
||++++..++++++.++|.. |+.+.....
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i 42 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKV 42 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCTTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999 997765443
No 433
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.48 E-value=5.7 Score=28.41 Aligned_cols=29 Identities=3% Similarity=-0.088 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||.++...++++++.++|+.|+.+.....
T Consensus 29 ~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i 57 (124)
T 2e5i_A 29 SIQNPLYPITVDVLYTVCNPVGKVQRIVI 57 (124)
T ss_dssp EEESCCSCCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEcCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 78999999999999999999998765544
No 434
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.03 E-value=6.4 Score=27.10 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=23.7
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFKQCGVVK 43 (113)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCBC
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCEe
Confidence 8999999999999999999999876
No 435
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=52.93 E-value=5.2 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.8
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~ 44 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFYGYQVIPG 44 (95)
T ss_dssp EEECCCTTCCHHHHHHHTTTSCBCTT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCccc
Confidence 89999999999999999999987654
No 436
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=52.89 E-value=4.7 Score=28.10 Aligned_cols=29 Identities=7% Similarity=0.243 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 72 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPFGNVISAKV 72 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTSCEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999998765444
No 437
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=52.75 E-value=6.9 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.4
Q ss_pred hhhcccccCCChHHHHHHHHhhccccc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
.||++++..++++++..+|..|+.+..
T Consensus 48 l~V~nLp~~~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 48 IYVKNLAKHVQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGCCTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 499999999999999999999997754
No 438
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.48 E-value=6 Score=27.28 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.7
Q ss_pred hhcccccCCChHHHHHHHHhhccccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
||++++..++++++.++|..|+.+....
T Consensus 19 ~V~nlp~~~~~~~l~~~f~~~G~i~~~~ 46 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFSMAGVVVRAD 46 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 8999999999999999999999776443
No 439
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=52.34 E-value=7 Score=27.02 Aligned_cols=29 Identities=7% Similarity=0.259 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAPFGRISDARV 47 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765444
No 440
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=52.11 E-value=6.7 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i 40 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFGKYGPIRQIRV 40 (115)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765443
No 441
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=52.05 E-value=5.3 Score=26.83 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.2
Q ss_pred CccCeEEEEe
Q psy633 13 LSKGFGFVTF 22 (300)
Q Consensus 13 ~~rGfgfv~f 22 (300)
..||||||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4789999974
No 442
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.49 E-value=5.3 Score=26.82 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~~ 47 (99)
T 2cpj_A 19 FVGNLPPDITEEEMRKLFEKYGKAGEVFI 47 (99)
T ss_dssp EEESCCTTCCHHHHHHHTSTTCCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHhhcCCeEEEEE
Confidence 89999999999999999999997765443
No 443
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=51.28 E-value=6.1 Score=24.80 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999998543
No 444
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=51.27 E-value=6.1 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 368999998554
No 445
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.22 E-value=6.4 Score=27.30 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=22.8
Q ss_pred hhcccccCCChHHHHHHHHhhccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQA 108 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~ 108 (300)
||++|+..++++++.++|..|+.+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~v 42 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEGIPVD 42 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTTSCCC
T ss_pred EEeCcCCcCCHHHHHHHHHhCCCc
Confidence 899999999999999999999877
No 446
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=51.21 E-value=3.9 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+.....
T Consensus 5 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 33 (90)
T 2ki2_A 5 YVGNLVYSATSEQVKELFSQFGKVFNVKL 33 (90)
T ss_dssp EEEEECTTSSHHHHTTTHHHHTCCSEEEE
T ss_pred EECCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999999998765444
No 447
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=50.89 E-value=8.2 Score=27.12 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=25.5
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 39 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i 67 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFAEFGTLKKAAV 67 (124)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 89999999999999999999997765444
No 448
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.76 E-value=5.7 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.8
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~v~~ 44 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFYGYQVIPG 44 (98)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCCCTT
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCccc
Confidence 89999999999999999999987753
No 449
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=50.33 E-value=5.9 Score=26.65 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=24.0
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++++..++++++.++|..|+.+..
T Consensus 21 ~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 21 FIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 89999999999999999999997665
No 450
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.19 E-value=7.7 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.5
Q ss_pred hhcccccCCChHHHHHHHHhh--cccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALY--KQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~--k~~~ 109 (300)
||++++..++++++.++|..| +.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~g~v~ 45 (99)
T 2cpd_A 19 YVRNLMLSTSEEMIEKEFNNIKPGAVE 45 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSTTCEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 899999999999999999999 5544
No 451
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.00 E-value=5.4 Score=27.19 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++|+...+++++.++|..|+.+.
T Consensus 19 ~V~nLp~~~te~~l~~~F~~~G~v~ 43 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFSGLEIVP 43 (104)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 8999999999999999999999765
No 452
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.72 E-value=7.1 Score=27.07 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=22.6
Q ss_pred hhhhcccccCCChHHHHHHHHhhcccc
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
+.||++|+...+++++.++|..| .+.
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~ 43 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVD 43 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCC
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-Cee
Confidence 34999999999999999999999 443
No 453
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=49.58 E-value=6.6 Score=25.10 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T 3a0j_A 11 AEKGYGFIEREG 22 (73)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEecCC
Confidence 368999998554
No 454
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.33 E-value=4.7 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFSPFGTITSAKV 47 (103)
T ss_dssp EEECCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999997765443
No 455
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=48.72 E-value=8 Score=28.48 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=26.4
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
.||++++..++++++.++|..|+.+......
T Consensus 6 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 36 (167)
T 2cjk_A 6 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIM 36 (167)
T ss_dssp EEECSCCTTCCHHHHHHHHTTTCCEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 4899999999999999999999987655443
No 456
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=48.69 E-value=7.1 Score=24.38 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 10 ~~kGfGFI~~~~ 21 (66)
T 1g6p_A 10 SKKGYGFITKDE 21 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 368999998553
No 457
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=48.62 E-value=7.2 Score=27.88 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=25.6
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 50 ~V~nLp~~~te~~L~~~F~~~G~I~~v~i 78 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFSKYGPIADVSI 78 (129)
T ss_dssp CEETCTTSCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998765444
No 458
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=48.36 E-value=6.6 Score=26.08 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=23.9
Q ss_pred hhcccccCCChHHHHHHHHhhcccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVG 111 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g 111 (300)
||++++..++++++.++|..|+.+...
T Consensus 20 ~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 20 LAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp EEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred EEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 899999999999999999999876543
No 459
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.32 E-value=6.9 Score=26.50 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=23.6
Q ss_pred hhcccccCCChHHHHHHHHhhccccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~ 112 (300)
||++++..++++++.++|..|+ +....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G-i~~v~ 45 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFRGLN-ISAVR 45 (104)
T ss_dssp EEESCCSSCCHHHHHHHTTTSC-EEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHHCC-ceEEE
Confidence 8999999999999999999998 54433
No 460
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=48.19 E-value=7.1 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=9.1
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 18 ~~kGfGFI~~~~ 29 (79)
T 1h95_A 18 VRNGYGFINRND 29 (79)
T ss_dssp TTTTEEEEEEGG
T ss_pred CCCCcEEEecCC
Confidence 368999998543
No 461
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=48.18 E-value=8 Score=26.56 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 30 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i 58 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFEPFGRIESIQL 58 (108)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999997765443
No 462
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=48.14 E-value=10 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.7
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 67 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~i 95 (140)
T 2ku7_A 67 YVGGLAEEVDDKVLHAAFIPFGDITDIQI 95 (140)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999998765544
No 463
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=47.80 E-value=54 Score=28.03 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=53.0
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCcc------chh------hhHHHHHHHHcCCCCHHHH
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWY------NME------AKSKYNAWNSLGQMAKSEA 143 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~------~~~------~~~k~~aw~~~~~~~~~~a 143 (300)
-|.++..-+-.-.-.++.++...+.++.=|+..|+.+... ++.. ... ...=-..|.++.+++..+|
T Consensus 186 ~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~e~~I~~~~~~~~g~s~~eA 265 (371)
T 3ivf_A 186 LYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEA 265 (371)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchHHHHHHHHHHHccCCCHHHH
Confidence 4555554443333467889999999999899988876532 2221 110 1112456889999999999
Q ss_pred HHHHHHHHHhhc
Q psy633 144 MSKYIALLNEVD 155 (300)
Q Consensus 144 ~~~yi~~v~~l~ 155 (300)
+..|++.++.+.
T Consensus 266 ~~~yL~~~~~l~ 277 (371)
T 3ivf_A 266 KVRYVKLARSLK 277 (371)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHhccc
Confidence 999999998763
No 464
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.58 E-value=6.2 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=23.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 29 ~V~nLp~~~t~~~l~~~f~~~G~v~ 53 (115)
T 2cpx_A 29 YLKNLSPRVTERDLVSLFARFQEKK 53 (115)
T ss_dssp EEECCCTTCCHHHHHHHTHHHHHSS
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 8999999999999999999999873
No 465
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.39 E-value=8.6 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=24.3
Q ss_pred hhcccccCCChHHHHHHHHhhcc-ccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQ-ATVGQ 112 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~-~~~g~ 112 (300)
||++++..++++++.++|..|+. +....
T Consensus 12 ~V~nLp~~~t~~~l~~~f~~~G~~v~~v~ 40 (109)
T 2dis_A 12 FIGGIPKMKKREEILEEIAKVTEGVLDVI 40 (109)
T ss_dssp EEECCCTTSCHHHHHHHHHHHSTTEEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHHhcCCceEEE
Confidence 89999999999999999999986 55433
No 466
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=46.94 E-value=9.5 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=23.7
Q ss_pred hhcccccCCChHHHH----HHHHhhcccccc
Q psy633 85 YLPSLVKKLDSSTLL----KFYALYKQATVG 111 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~----~~~~~~k~~~~g 111 (300)
||++++..++++++. ++|..|+.+...
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v 42 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDI 42 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999 999999876643
No 467
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=46.02 E-value=9.2 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=21.8
Q ss_pred hhcccccCCChHHHHHHHHhhcc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
||++++...+++++.++|..|+.
T Consensus 15 ~V~nLp~~~te~~l~~~F~~~g~ 37 (107)
T 2lmi_A 15 RAQGLPWSCTMEDVLNFFSDCRI 37 (107)
T ss_dssp EEECCCSSCCSHHHHHHTTTSCB
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 89999999999999999999887
No 468
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=45.85 E-value=7.6 Score=28.88 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=26.4
Q ss_pred HhhhhcccccCCChHHHHHHHHhhc--ccccccC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYK--QATVGQC 113 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k--~~~~g~~ 113 (300)
...||++|+..++++++.++|..|+ .+.....
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i 89 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKF 89 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEE
Confidence 3459999999999999999999999 5554443
No 469
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=45.82 E-value=8.3 Score=24.48 Aligned_cols=12 Identities=58% Similarity=0.985 Sum_probs=9.3
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999998654
No 470
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.79 E-value=5.5 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=23.0
Q ss_pred hhcccccCCChHHHHHHHHhhcccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQAT 109 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~ 109 (300)
||++++..++++++.++|..|+.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~v~ 43 (101)
T 2fc9_A 19 VLSNLSYSATEETLQEVFEKATFIK 43 (101)
T ss_dssp EEESCCTTCCHHHHHHHCSSCSEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCEEE
Confidence 8999999999999999999998764
No 471
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=45.44 E-value=9.5 Score=27.92 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=25.3
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++...+++++.++|..|+.+.....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~~G~i~~v~i 32 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQVGGPIANIKI 32 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EECCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 79999999999999999999998765444
No 472
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.21 E-value=7.6 Score=27.20 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=22.1
Q ss_pred hhcccccCCChHHHHHHHHhhcc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
||++|+...+++++.++|..|+.
T Consensus 21 ~V~nLp~~~te~~l~~~F~~~G~ 43 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLSDCTI 43 (118)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCB
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC
Confidence 89999999999999999999987
No 473
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=45.12 E-value=10 Score=24.27 Aligned_cols=12 Identities=50% Similarity=0.916 Sum_probs=9.5
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999998654
No 474
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.99 E-value=4 Score=28.26 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=25.9
Q ss_pred hhcccccCCChHHHH---HHHHhhcccccccCC
Q psy633 85 YLPSLVKKLDSSTLL---KFYALYKQATVGQCN 114 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~---~~~~~~k~~~~g~~~ 114 (300)
||++++..++++++. ++|..|+.+......
T Consensus 19 ~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~ 51 (111)
T 2cpi_A 19 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVIN 51 (111)
T ss_dssp EEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhhccCCEEEEEEe
Confidence 899999999999999 999999987655443
No 475
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=44.94 E-value=9.8 Score=27.30 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=25.8
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 45 l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i 74 (139)
T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKI 74 (139)
T ss_dssp EEEESCSTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 489999999999999999999998765443
No 476
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=44.54 E-value=15 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=27.9
Q ss_pred hhhccccc-CCChHHHHHHHHhhcccccccCCCCC
Q psy633 84 DYLPSLVK-KLDSSTLLKFYALYKQATVGQCNIDK 117 (300)
Q Consensus 84 ~~v~~~~~-~~~~~~~~~~~~~~k~~~~g~~~~~~ 117 (300)
.||++++. .++++++.++|..|+.+.......++
T Consensus 6 l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~ 40 (198)
T 1qm9_A 6 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 40 (198)
T ss_dssp EEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 48999999 99999999999999987765554443
No 477
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=44.31 E-value=11 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.3
Q ss_pred CccCeEEEEecC
Q psy633 13 LSKGFGFVTFQN 24 (300)
Q Consensus 13 ~~rGfgfv~f~~ 24 (300)
..||||||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999998554
No 478
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=43.92 E-value=10 Score=28.03 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=25.8
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 6 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 35 (175)
T 3nmr_A 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINV 35 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 389999999999999999999998765443
No 479
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.87 E-value=7 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.8
Q ss_pred hhcccccCCChHHHHHHHHhhccccc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
||++|+..++++++.++|..|+.+..
T Consensus 29 ~V~nLp~~~te~~l~~~F~~~G~v~~ 54 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFKKLDIVED 54 (124)
T ss_dssp EEECCCTTCCHHHHHHHSCSSCBCTT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCccc
Confidence 89999999999999999999987654
No 480
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.46 E-value=5.1 Score=27.09 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=25.4
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~~G~i~~v~i 47 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFRPFGSISRIYL 47 (103)
T ss_dssp EEESCCTTCCHHHHHTTSTTTCCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999997765444
No 481
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=42.43 E-value=10 Score=27.46 Aligned_cols=31 Identities=3% Similarity=0.099 Sum_probs=26.2
Q ss_pred hhccc----ccCCChHHHHHHHHhhcccccccCCC
Q psy633 85 YLPSL----VKKLDSSTLLKFYALYKQATVGQCNI 115 (300)
Q Consensus 85 ~v~~~----~~~~~~~~~~~~~~~~k~~~~g~~~~ 115 (300)
+|.++ +...+++.+..+|+.||.+.......
T Consensus 6 ~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~ 40 (136)
T 2j8a_A 6 VVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFN 40 (136)
T ss_dssp EEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEE
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 78899 89999999999999999877655433
No 482
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=42.20 E-value=14 Score=27.96 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=27.3
Q ss_pred HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633 82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 114 (300)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~ 114 (300)
...||++++..++++++.++|..|+.+....+.
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 121 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVD 121 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 345899999999999999999999987654443
No 483
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=42.03 E-value=6.8 Score=31.29 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=26.8
Q ss_pred HHhhhhcccccCCChHHHHHHHHhhc--ccccccC
Q psy633 81 QACDYLPSLVKKLDSSTLLKFYALYK--QATVGQC 113 (300)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~~k--~~~~g~~ 113 (300)
..+.||++|...++++++.++|..|+ .+....+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i 102 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF 102 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEE
Confidence 34569999999999999999999999 6654443
No 484
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=41.42 E-value=12 Score=30.20 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=24.6
Q ss_pred hhcccccCC---------ChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKL---------DSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~---------~~~~~~~~~~~~k~~~~g~~ 113 (300)
||+++...+ +++++.++|..|+.+....+
T Consensus 138 fVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v 175 (240)
T 3u1l_A 138 YVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY 175 (240)
T ss_dssp EEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred ecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE
Confidence 899998777 69999999999998876554
No 485
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.42 E-value=29 Score=24.58 Aligned_cols=51 Identities=6% Similarity=-0.087 Sum_probs=36.0
Q ss_pred hhcccccC-CChHHHHHHHHhhcccccccCCCC-CCCccchhh--hHHHHHHHHc
Q psy633 85 YLPSLVKK-LDSSTLLKFYALYKQATVGQCNID-KPSWYNMEA--KSKYNAWNSL 135 (300)
Q Consensus 85 ~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~~~~-~p~~~~~~~--~~k~~aw~~~ 135 (300)
+|.++... ++.+++.++|..|+.+...+.... ..|+..|.. ..--.++.++
T Consensus 22 ~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 22 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred EEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 78888887 999999999999998877665543 346655554 3334455554
No 486
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=41.11 E-value=11 Score=25.13 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.1
Q ss_pred cCeEEEEecC
Q psy633 15 KGFGFVTFQN 24 (300)
Q Consensus 15 rGfgfv~f~~ 24 (300)
||||||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999998554
No 487
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=40.48 E-value=13 Score=27.28 Aligned_cols=30 Identities=7% Similarity=0.001 Sum_probs=26.0
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+....+
T Consensus 42 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 71 (156)
T 1h2v_Z 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIM 71 (156)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 489999999999999999999998765444
No 488
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.27 E-value=7.8 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=25.2
Q ss_pred hhcccccCCChHHHHHHHHhhcccccccC
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
||++++..++++++.++|..|+.+.....
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 57 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLKPFGQVISTRI 57 (114)
T ss_dssp EEESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 89999999999999999999987665443
No 489
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=40.06 E-value=11 Score=25.54 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=8.7
Q ss_pred ccCeEEEEecC
Q psy633 14 SKGFGFVTFQN 24 (300)
Q Consensus 14 ~rGfgfv~f~~ 24 (300)
.||||||+-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 68999998554
No 490
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=39.83 E-value=9.3 Score=27.70 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=22.2
Q ss_pred hhcccccCCChHHHHHHHHhhcc
Q psy633 85 YLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
||++|+...+++++.++|..|+.
T Consensus 48 fVgnLp~~~te~dL~~~F~~~G~ 70 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLSDCTI 70 (136)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999999987
No 491
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=45.97 E-value=6.1 Score=27.44 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=24.8
Q ss_pred hhhhcccccCCChHHHHHHHHhhccccc
Q psy633 83 CDYLPSLVKKLDSSTLLKFYALYKQATV 110 (300)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~ 110 (300)
..||++++..++++++.++|..|+.+..
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 36 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKT 36 (116)
Confidence 4489999999999999999999997764
No 492
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=39.74 E-value=13 Score=27.44 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=9.4
Q ss_pred ccCeEEEEecC
Q psy633 14 SKGFGFVTFQN 24 (300)
Q Consensus 14 ~rGfgfv~f~~ 24 (300)
.||||||+-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 68999999765
No 493
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.69 E-value=63 Score=29.68 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCcc------chh-------hhHHH-----HHHHHcCC
Q psy633 78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWY------NME-------AKSKY-----NAWNSLGQ 137 (300)
Q Consensus 78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~------~~~-------~~~k~-----~aw~~~~~ 137 (300)
-|.++..-+-.-...++.++...|.++.-|+..|+.+... |+++ +.. ....| ..|..+.+
T Consensus 102 lYlQvk~dIl~G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G 181 (575)
T 2i1j_A 102 FYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRG 181 (575)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccC
Confidence 4555554443323367889999999988899889876542 3332 110 12234 35788999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy633 138 MAKSEAMSKYIALLNEV 154 (300)
Q Consensus 138 ~~~~~a~~~yi~~v~~l 154 (300)
++..+|+..|+.++..+
T Consensus 182 ~s~~eA~~~yL~~a~~l 198 (575)
T 2i1j_A 182 MLREDAMMEYLKIAQDL 198 (575)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 494
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=38.97 E-value=14 Score=27.01 Aligned_cols=30 Identities=3% Similarity=0.039 Sum_probs=25.7
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 5 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~ 34 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKL 34 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 389999999999999999999998765444
No 495
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=38.15 E-value=14 Score=27.00 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=25.7
Q ss_pred hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC 113 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~ 113 (300)
.||++++..++++++.++|..|+.+.....
T Consensus 6 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i 35 (168)
T 1b7f_A 6 LIVNYLPQDMTDRELYALFRAIGPINTCRI 35 (168)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 389999999999999999999998765443
No 496
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=38.14 E-value=9.6 Score=24.79 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=8.7
Q ss_pred ccCeEEEEecC
Q psy633 14 SKGFGFVTFQN 24 (300)
Q Consensus 14 ~rGfgfv~f~~ 24 (300)
.||||||+-.+
T Consensus 17 ~KGfGFI~~dd 27 (79)
T 2ytv_A 17 KDQFGFINYEV 27 (79)
T ss_dssp CSSEEEESCCC
T ss_pred cccceeEeCCC
Confidence 49999997554
No 497
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=44.00 E-value=6.9 Score=24.79 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=8.8
Q ss_pred ccCeEEEEecC
Q psy633 14 SKGFGFVTFQN 24 (300)
Q Consensus 14 ~rGfgfv~f~~ 24 (300)
.||||||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 68999998554
No 498
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=37.64 E-value=17 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=27.6
Q ss_pred hhccccc-CCChHHHHHHHHhhcccccccCCCCC
Q psy633 85 YLPSLVK-KLDSSTLLKFYALYKQATVGQCNIDK 117 (300)
Q Consensus 85 ~v~~~~~-~~~~~~~~~~~~~~k~~~~g~~~~~~ 117 (300)
||++++. .++++++.++|..|+.+.......++
T Consensus 38 ~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 38 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp EEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred EEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 8999999 99999999999999987765554443
No 499
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=37.28 E-value=15 Score=26.25 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.8
Q ss_pred hhhcccccCCChHHHHHHHHhhcc
Q psy633 84 DYLPSLVKKLDSSTLLKFYALYKQ 107 (300)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~k~ 107 (300)
.||++|+...+++++.++|..|+.
T Consensus 45 lfVgnLp~~~te~dL~~~F~~~~i 68 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFSGLEI 68 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSCE
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCc
Confidence 389999999999999999999943
No 500
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=36.98 E-value=12 Score=24.95 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=8.7
Q ss_pred cCeEEEEecC
Q psy633 15 KGFGFVTFQN 24 (300)
Q Consensus 15 rGfgfv~f~~ 24 (300)
||||||+-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 9999999765
Done!