RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy633
(300 letters)
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 106 bits (266), Expect = 4e-29
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 65 TASFSRMA-ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNM 123
++ +R A + F + + + L K + LK YALYKQAT G CN+ KP +++
Sbjct: 5 SSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDL 64
Query: 124 EAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESG 175
K+K++AWN+LG + K A Y+ L++ + E Q E D SG
Sbjct: 65 INKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG 116
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 103 bits (259), Expect = 4e-28
Identities = 38/107 (35%), Positives = 60/107 (56%)
Query: 69 SRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSK 128
S + + + F +A +L L++ LL YA YKQ VG CN KPS+++ E K K
Sbjct: 2 SSGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQK 61
Query: 129 YNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESG 175
+ AW +LG + S+AM +YIA++ ++D GW + E+ + S S
Sbjct: 62 WEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEASGPSS 108
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 100 bits (250), Expect = 4e-27
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 74 NMEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
+M F + ++ L + L + L Y YKQ+T+G CNI +PS + + KY A
Sbjct: 1 HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
W S+ + + +A +Y+ +++E+ W+D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPYWQD 89
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 98.4 bits (245), Expect = 2e-26
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
+ F +A + + L K +L Y YKQATVG N ++P + K+K++AWN L
Sbjct: 3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
Query: 136 GQMAKSEAMSKYIALLNEVDAGW 158
+K +AM YI + E+ +
Sbjct: 63 KGTSKEDAMKAYINKVEELKKKY 85
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 97.7 bits (243), Expect = 5e-26
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
+ F + + L K + LL+ YALYKQATVG + +KP +NM+ + K+ AW +
Sbjct: 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWEN 60
Query: 135 LGQMAKSEAMSKYIALLNEVDAGW 158
L ++ +A +YIAL++++ A +
Sbjct: 61 LKGKSQEDAEKEYIALVDQLIAKY 84
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 97.7 bits (243), Expect = 6e-26
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 76 EDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
D F+ A Y+ + + L FY YKQATVG CN KP ++ K K+ AWN+
Sbjct: 11 ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNA 70
Query: 135 LGQMAKSEAMSKYIALLNEVDAGWED 160
L M+ A Y+ LL+ + W +
Sbjct: 71 LRGMSTESAKEAYVKLLDTLAPSWRN 96
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 94.5 bits (235), Expect = 7e-25
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
++ F++A + + L + D L + Y LYKQA VG NI P +++ K+K+ AWN
Sbjct: 4 LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNL 63
Query: 135 LGQMAKSEAMSKYIALLNEVDAGW 158
++ +A S YI+ E+ +
Sbjct: 64 KKGLSTEDATSAYISKAKELIEKY 87
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 92.3 bits (229), Expect = 8e-24
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 76 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
+ +F++A + + SL K K L FY +KQATVG NI +P + K+K++A
Sbjct: 5 KAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDA 64
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
W S+ +K A KY+ L E+ + +E ++
Sbjct: 65 WKSVEGTSKEVAYQKYVEKLLEILKKADTEESKK 98
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 92.4 bits (229), Expect = 1e-23
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 76 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
E RF A + SL K + + +LKFY+ YKQAT G C + +P +++ + K++A
Sbjct: 25 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
W+SLG M K EAM Y+ + ++ E+ E
Sbjct: 85 WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing,
fatty acid metabolism, lipid transport, lipid binding
protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 90.5 bits (224), Expect = 4e-23
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 67 SFSRMAENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYN 122
S S + + +F A + +L K + +L+FY+ YKQAT+G C + +P +++
Sbjct: 1 SMSPEPD-CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWD 59
Query: 123 MEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
+ K++AWNSLG+M++ EAMS YI + V D
Sbjct: 60 PIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 78.4 bits (194), Expect = 2e-17
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 199 LDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
E+ AK G L +++ +N LD+ G L+WAC GH +
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSW-LRECLD-NRVGVNGLDKAGSTALYWACHGGHKDI 121
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ L + ++N + GD L A + D+++ L+ GA
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 73.8 bits (182), Expect = 1e-15
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + G D+ V+ L + +NQ ++ G LH A +G+ +VQ
Sbjct: 100 NGLDKAGSTALYWACHGGHKDI-VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ K GA ++ + + D A L++ + A
Sbjct: 159 LLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197
Score = 62.3 bits (152), Expect = 9e-12
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
D +G+ ++ + + E+ N LH A RG+L +
Sbjct: 37 DIIYITDMSDTNWWKGTSKGRTGLI-------PSNYVAEQAESIDNPLHEAAKRGNLSWL 89
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NSGA 295
+ ++ VN D G L +A H D++E L
Sbjct: 90 RECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131
Score = 53.0 bits (128), Expect = 2e-08
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N++N A +G D+ V+ L K + + A + +++
Sbjct: 134 NQQNKLGDTALHAAAWKGYADI-VQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKK 191
Query: 256 LIEKCGADVNVTDSDGDYGLDYA 278
A +++++ + +
Sbjct: 192 KQGT-DAVRTLSNAEDYLDDEDS 213
Score = 49.6 bits (119), Expect = 2e-07
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
+ + G + A + L + D+ D + T LI
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 291 VN 292
Sbjct: 65 YV 66
Score = 28.0 bits (63), Expect = 3.0
Identities = 6/55 (10%), Positives = 13/55 (23%), Gaps = 8/55 (14%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250
+ +NI + L+K+ D + + H
Sbjct: 167 DLRNIEKKLAFDMATNAACAS-LLKKKQG-TDAVRTLSNAEDYLDDEDSDLEHHH 219
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 74.7 bits (185), Expect = 4e-17
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K+ A+ G L++ VK L + ++N D+NG LH A GHL+VV+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
L+E GADVN D +G L A H ++++ L+ +GA+
Sbjct: 87 LLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 65.8 bits (162), Expect = 8e-14
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D+NG LH A GHL+VV+ L+E GADVN D +G L A H ++++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 289 YLVNSGA 295
L+ +GA
Sbjct: 86 LLLEAGA 92
Score = 58.5 bits (143), Expect = 4e-11
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
NG LH A GHL+VV+ L+E GADVN D +G L A H ++++ L+ +GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 73.6 bits (182), Expect = 4e-16
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N N + A G D+ V++L + +IN ++E+G LH+AC G +V +
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDI-VQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ GA V++ + G+ +D AKA L E G
Sbjct: 124 LVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 71.7 bits (177), Expect = 2e-15
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
I+ +EG V+ + ++NQ D++G + LHWAC G VV+ LI + GA +N
Sbjct: 9 IFTQCREGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARIN 66
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V + D L A + H D+++ L+ A
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Score = 68.6 bits (169), Expect = 3e-14
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N+ + + + +EG+ + V+ L + IN ++ LH A GH +VQ
Sbjct: 33 NQGDDHGFSPLHWACREGRSAV-VEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ AD+N + G+ L YA + E LV +GA
Sbjct: 91 LLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 59.0 bits (144), Expect = 7e-11
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
++ + C G+ V+ ++ D+N D G L +A + ++E L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 294 GA 295
GA
Sbjct: 62 GA 63
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 77.1 bits (191), Expect = 4e-16
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N N A+EG + + L K ++ G LH A G++K+V+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPV-ADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ ADVN G L A HTD++ L+ +GA
Sbjct: 330 LLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Score = 73.7 bits (182), Expect = 6e-15
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + + G + + VK L + ++N + G + LH A +GH +V
Sbjct: 305 DATTRMGYTPLHVASHYGNIKL-VKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
L++ GA N SDG L AK + + + + L +S
Sbjct: 363 LLKN-GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Score = 72.1 bits (178), Expect = 2e-14
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + AK+ ++++ + L + + N G+ LH A GH ++V
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEV-ARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ K A+ N+ + G L H + + L+ G
Sbjct: 264 LLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Score = 71.8 bits (177), Expect = 2e-14
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N +++ A+EG +M V L K N N +++GL LH GH+ V
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEM-VALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LI+ G V+ T G L A + L+++L+ A
Sbjct: 297 LIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335
Score = 71.8 bits (177), Expect = 2e-14
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ AK GK+ + + L + +D + N +NGL LH A +L +V+
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRV-AELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ + G + +G L A ++ L+ G
Sbjct: 198 LLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 69.1 bits (170), Expect = 2e-13
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N N+ A+ G ++ K L + +N ++ LH A GH +V+
Sbjct: 41 NVSNVKVETPLHMAARAGHTEV-AKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+E A+ N+ + G L A H + + L+ A
Sbjct: 99 LLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 69.1 bits (170), Expect = 2e-13
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ E+GL LH A GHL +V++L+++ GA NV++ + L A HT++ +
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAK 64
Query: 289 YLVNSGA 295
YL+ + A
Sbjct: 65 YLLQNKA 71
Score = 67.9 bits (167), Expect = 5e-13
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K + A+ G +M VK L + + N N G LH A GH++ V
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNM-VKLLLE-NNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+EK A G L A + E L+ A
Sbjct: 132 LLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 53.7 bits (130), Expect = 2e-08
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K + A++G D+ V L K + N++ +G L A G++ V
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDI-VTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Query: 256 LIEKC--GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L + V V+D + + ++ +++
Sbjct: 396 LKVVTDETSFVLVSDKHR---------MSFPETVDEILDVSE 428
Score = 34.4 bits (80), Expect = 0.040
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
G G L A + H +++ L+ GA
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA 38
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 73.2 bits (181), Expect = 5e-16
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + G D+ V L + +D +IN D NG L +A H+K V+
Sbjct: 63 HILAKERESALSLASTGGYTDI-VGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ + GAD+ G +D A A+ + + + + N
Sbjct: 121 LLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 70.9 bits (175), Expect = 4e-15
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A +G+LD +K+ + D +N+ DE G L WA G ++ V+ L+E GAD ++
Sbjct: 10 AAQGELDQ-LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAK 67
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ + L A +TD++ L+
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDV 93
Score = 60.5 bits (148), Expect = 2e-11
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + + + V+ L + ++ ++G + A G+ KV Q
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKC-VEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 256 LIEKCGADVNVTDSDG 271
+ + ++
Sbjct: 154 IENH-ILKLFQSNLVP 168
Score = 52.4 bits (127), Expect = 1e-08
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 241 LHWACDRGHLKVVQHLIEKCGAD-VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+H +G L ++ + K G + VN D G L +A A + + +L+ GA
Sbjct: 6 IHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 76.1 bits (188), Expect = 6e-16
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 193 INDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD 246
++ + + + A+ + + VK L K N ++ DE+G + A
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPI-VKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
G ++VV +LI++ GA V D+ A+A H ++++
Sbjct: 323 EGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 62.3 bits (152), Expect = 3e-11
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + E + + V L K + +++ + LH A ++ +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRL-VAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVY 217
Query: 256 LIEKC--GADVNVTDSDGDYGLDYAKAIEHTDLI---EYLVNSGA 295
++ D+ D +G L E D + + LV GA
Sbjct: 218 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262
Score = 61.5 bits (150), Expect = 5e-11
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 200 DDNEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
E G + + +T+ + NI + LHW + +
Sbjct: 86 IPTEPEPESPIKLHTEAAGSYAI-TEPITR-ESVNIID-PRHNRTVLHWIASNSSAEKSE 142
Query: 255 HLIEK-------CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LI GADVN D D + L A L+ YL+ +GA
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190
Score = 61.1 bits (149), Expect = 7e-11
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 202 NEKNIYEW------AKEGKLDML--VKQL-------TKLKDFNINQLDENGLNCLHWACD 246
E + A D + K L + G LH+A
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
++ +V++L+ + G++ + D DG + A +++ YL+ GA
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337
Score = 58.4 bits (142), Expect = 7e-10
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N +D + L A ++V +L++ GAD + + L A A ++
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMV 216
Query: 289 YLVNSGAHSSN 299
Y++NS +
Sbjct: 217 YMLNSTKLKGD 227
Score = 55.3 bits (134), Expect = 5e-09
Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 2/70 (2%)
Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
N+L L G+ + + + L A
Sbjct: 50 IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTN-LQIPTEPEPESPIKLHTE-AAGSYA 107
Query: 286 LIEYLVNSGA 295
+ E +
Sbjct: 108 ITEPITRESV 117
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 72.8 bits (180), Expect = 6e-16
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+G D+ VK L ++N+ D NG L +A H+K V+
Sbjct: 63 QLLGKGRESALSLACSKGYTDI-VKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+E GAD + G +D A A+ + + + + +
Sbjct: 121 LLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 71.3 bits (176), Expect = 3e-15
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A +G++ + + ++ IN DE G L WA G + VV+ L++ GAD +
Sbjct: 11 AAQGEMLY-LATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGK 67
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L A + +TD+++ L++ G
Sbjct: 68 GRESALSLACSKGYTDIVKMLLDCGV 93
Score = 57.4 bits (140), Expect = 2e-10
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+H +G + + IE+ +N TD +G L +A A ++E+L+ +GA
Sbjct: 7 VHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 70.5 bits (174), Expect = 2e-15
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
K G LD VK K ++N+ E G LH+A D G L++++ L+ K GAD+N D
Sbjct: 15 LKNGDLDE-VKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDK 71
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
L A H ++ L++ GA
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 65.5 bits (161), Expect = 1e-13
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N A G+L++ ++ L K +IN D++ + L A GH+ V+
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEI-LEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKL 91
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
L+ K GAD V DG + L++
Sbjct: 92 LLSK-GADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 60.1 bits (147), Expect = 1e-11
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 233 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
L WA G L V+ + K G DVN T G L YA +++E+L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 293 SGA 295
GA
Sbjct: 62 KGA 64
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 69.3 bits (171), Expect = 2e-15
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A+ G L++ VK L + ++N D+NG LH A GHL+VV+ L+E GADVN D
Sbjct: 10 ARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDK 66
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
+G L A H ++++ L+ +GA+
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 61.2 bits (150), Expect = 2e-12
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
NG LH A GHL+VV+ L+E GADVN D +G L A H ++++ L+ +GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Score = 47.7 bits (115), Expect = 1e-07
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K+ A+ G L++ VK L + ++N D+NG LH A GHL+VV+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 256 LIEKCGA 262
L+E GA
Sbjct: 87 LLEA-GA 92
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 73.7 bits (182), Expect = 3e-15
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKV 252
N + V+ +T L ++N E G L A ++ HL +
Sbjct: 176 NACDNMGRNALIHALLSSDDSD-VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
VQ L+E+ ++N TDSDG L A ++ + E L GA
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 65.2 bits (160), Expect = 2e-12
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ +NG A G +K+++ + K GADVN D G A ++
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 289 YLVNSGA 295
+L GA
Sbjct: 123 FLYKRGA 129
Score = 62.9 bits (154), Expect = 1e-11
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC----------LHWAC 245
NE + Y + A GK+ +K L K + N+N + + L A
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKA-LKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD----LIEYLVNSGA 295
++GH++V++ L+++ GADVN D+ G L +A + L++ GA
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Score = 59.4 bits (145), Expect = 2e-10
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+ +D+ V+QL + N+N + E G LH A +V+ L+ GAD +
Sbjct: 13 VQNEDVDL-VQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRK 69
Query: 269 SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+G A L++ ++ GA
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGA 96
Score = 55.6 bits (135), Expect = 4e-09
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEHTDLIEYLVN 292
+ L A + +VQ L+E GA+VN + +G + L A + D++E L+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 293 SGA 295
GA
Sbjct: 61 HGA 63
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 71.7 bits (177), Expect = 3e-15
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N +N +G+ ++ + + K ++N+ + G N L A ++GH+ V+
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEI-LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIE-----HTDLIEYLVNSGA 295
L+E D++ + G L A + + D+++ L+ +GA
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 65.9 bits (162), Expect = 4e-13
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+ E A + + + L + ++++D G L+ A +++ + LI++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
GAD+N+ +S D YA A T+++ Y++
Sbjct: 62 -GADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 64.4 bits (158), Expect = 1e-12
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC-----DRG 248
D N+ N Y A++G +D VK L + +I+ ++ G L A ++
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDN-VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
+ +V+ L+E GAD ++ D+ G +DYA +T++ + L
Sbjct: 157 YQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 62.1 bits (152), Expect = 1e-11
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+E + +++ K L + +IN + + +A +G +++ +
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEI-AKALID-RGADINLQNSISDSPYLYAGAQGRTEILAY 90
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+++ D+N + G L A H D ++ L+ G
Sbjct: 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Score = 39.4 bits (93), Expect = 5e-04
Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHL 250
D + +N + + + + L + + KL + + D +G + +A +G+
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 251 KVVQHLIE 258
++ + L +
Sbjct: 192 EISKILAQ 199
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 69.8 bits (172), Expect = 4e-15
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNC-LHWACDRGHLKVVQH 255
N N + G + + L N D L +H A G L +
Sbjct: 39 NALNRFGRRPIQVMMMGSAQV-AELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L GA ++V D+ G +D A+ H D+ YL +
Sbjct: 97 LHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 66.7 bits (164), Expect = 6e-14
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
I+ L + L A RG ++ V+ L+E GAD N + G + + + E
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVM-MMGSAQVAE 61
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 62 LLLLHGA 68
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 200 DDNEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
+ N + A+EG LD + L + ++ D G + A ++GH +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDT-LVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 253 VQHLIEKCGAD 263
++L D
Sbjct: 127 ARYLHAA-TGD 136
Score = 34.7 bits (81), Expect = 0.011
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+++ D GL A A + + L+ +GA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA 36
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 69.8 bits (172), Expect = 5e-15
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K+ W G L + V+ L + +N + LH A GH+ +V+
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKV-VELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
L+ GA N + G +DY L+ + + S++
Sbjct: 95 LLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 67.1 bits (165), Expect = 4e-14
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ N D G LH AC+ GHLKVV+ L++ A VN T D L A H D+++
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVK 93
Query: 289 YLVNSGA 295
L++ GA
Sbjct: 94 LLLSYGA 100
Score = 63.6 bits (156), Expect = 9e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ + G LH A +G + V++L++ G+D NV D G L A H ++E
Sbjct: 3 DPFT-NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 289 YLVNSGA 295
L+ A
Sbjct: 61 LLLQHKA 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 71.9 bits (177), Expect = 5e-15
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 200 DDNEKNIYEW---------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250
+ A G+L++ V+Q K + + +Q +E G+ LH A +
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEV-VQQAVK-EMNDPSQPNEEGITALHNAICGANY 67
Query: 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+V LI GA+VN DS G L A + T + LV GA
Sbjct: 68 SIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Score = 65.4 bits (160), Expect = 8e-13
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 12/103 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
++ N + V L N+N D +G LH A +
Sbjct: 48 SQPNEEGITALHNAICGANYSI-VDFLIT-AGANVNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 256 LIEKCGADVNVTD-SDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
L++ GA + T SDG + + D YL +
Sbjct: 106 LVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147
Score = 34.2 bits (79), Expect = 0.036
Identities = 4/46 (8%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 253 VQHLIEKCGADVNVTDSDGDYG---LDYAKAIEHTDLIEYLVNSGA 295
++ ++ K L A ++++ V
Sbjct: 1 MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN 45
Score = 31.8 bits (73), Expect = 0.17
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 9/60 (15%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
N + E ++ + + + + + D WA G V
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDELSFR---EGESVTVLRRDGPEETDWWWAALHGQEGYV 204
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 70.5 bits (174), Expect = 1e-14
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
D N ++ W + +D+ VK L K +IN D CLHWA G + +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDL-VKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIA 160
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L+ D++ + GD L A D + ++ +
Sbjct: 161 EILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201
Score = 67.4 bits (166), Expect = 2e-13
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N ++ E A G +D+ + L +++ ++ +G + LH A V
Sbjct: 138 NIRDNEENICLHWAAFSGCVDI-AEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ + +DV + + +G+ L A + +
Sbjct: 196 FLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 66.7 bits (164), Expect = 3e-13
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + + A+ L+ VK L K ++ D G CLH A +GH +VVQ+
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEA-VKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ DVN D G + +A +H DL++ L++ G+
Sbjct: 96 LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 65.1 bits (160), Expect = 1e-12
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N +N + LH A + GH+ + L++ GA+++ D L A H + ++
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 289 YLVNSGA 295
YL+ +GA
Sbjct: 62 YLIKAGA 68
Score = 47.0 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ NI+ A+E + D V +D ++ ++ G L A +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDC-VVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Query: 256 LIEKCGAD 263
+ + D
Sbjct: 229 MSKA-LQD 235
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 72.2 bits (178), Expect = 1e-14
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 202 NEKNIYEW------AKEGKLDM---LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
K+ + + + ++ + ++ ++ G + LHWA V
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+E G DVN+ D++ L + L + L+
Sbjct: 227 AMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Score = 71.1 bits (175), Expect = 4e-14
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 221 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280
+T N + D+ + +H A +G V+ LIE G + + G L A
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACK 62
Query: 281 IEHTDLIEYLVNSGA 295
D +YL + G
Sbjct: 63 FGCVDTAKYLASVGE 77
Score = 67.6 bits (166), Expect = 5e-13
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 20/112 (17%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQL-----------TKLKD-FNINQLDENGLNCLHW 243
N ++ + + + K+L + + L+ +
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLL-TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296
Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
A D +V+Q L EK +V + + G G K + + A
Sbjct: 297 AADPSKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347
Score = 62.6 bits (153), Expect = 2e-11
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 195 DESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
D +L+ + + A++G+ D V++L + + + G LH AC G
Sbjct: 7 DFPKLNRIKSDDENMEKIHVAARKGQTDE-VRRLIE-TGVSPTIQNRFGCTALHLACKFG 64
Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
+ ++L G + G + A TDL+ LV
Sbjct: 65 CVDTAKYLASV-GEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113
Score = 59.9 bits (146), Expect = 2e-10
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 198 QLDDNEKNIYEW------AKEGK--LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249
++ + K+ G L+M +K L + + D+ L A + +
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEM-IKILVQ-LGASPTAKDKADETPLMRAMEFRN 185
Query: 250 LKVVQHLIEKC----GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ + +++ ++ + G+ L +A I D+ V G
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235
Score = 56.4 bits (137), Expect = 3e-09
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 9/102 (8%)
Query: 184 KGWVNVSSMINDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENG 237
K V + + + A K ++ ++ L + K + + G
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV-LQLLQE-KLDEVVRSLNTG 323
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279
+ V + + A V +K
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAVSK 364
Score = 49.9 bits (120), Expect = 4e-07
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 32/122 (26%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+N + K G +D K L + +G +H A +V
Sbjct: 47 TIQNRFGCTALHLACKFGCVDT-AKYLAS-VGEVHS--LWHGQKPIHLAVMANKTDLVVA 102
Query: 256 LIEKC--------------------GADVNVTDSDGDYGLDYA--KAIEHTDLIEYLVNS 293
L+E +V G L + E+ ++I+ LV
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162
Query: 294 GA 295
GA
Sbjct: 163 GA 164
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 68.6 bits (169), Expect = 2e-14
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ K+ + A+ G LD ++ L + ++N D G LH A GHL+VV+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDT-LQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ ++V + GD D A+ +++ + +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 68.2 bits (168), Expect = 3e-14
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
N +N + K G ++ ++L + N + D G +H A G L +Q L
Sbjct: 32 NAQNGFGRTALQVMKLGNPEI-ARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89
Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+E ADVN+ D++G+ L A H ++E+LV A
Sbjct: 90 LEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 58.5 bits (143), Expect = 7e-11
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 233 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
+ E N L A RG L+ + L++ +VN + G L + + ++ L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVM-KLGNPEIARRLLL 58
Query: 293 SGA 295
GA
Sbjct: 59 RGA 61
Score = 55.9 bits (136), Expect = 8e-10
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+N + G L G+ ++ + L+ + GA+ ++ D G + A D ++
Sbjct: 30 NVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQ 87
Query: 289 YLVNSGA 295
L+ A
Sbjct: 88 TLLEFQA 94
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 69.8 bits (172), Expect = 3e-14
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+N +G + LH A RG L +V+ L+ GAD ++ + D L A++ D++
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 233
Query: 289 YLVNSGA 295
A
Sbjct: 234 GKATRPA 240
Score = 65.2 bits (160), Expect = 1e-12
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKV 252
+ +G L V +L L ++ + LH A V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPA-VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ L+ GA D G A + L++S A
Sbjct: 62 VRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Score = 65.2 bits (160), Expect = 1e-12
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTK---LKDFNINQLDENGLNCLHWACDRGHLKV 252
+ + + ++ L ++ + +GL LH A + +
Sbjct: 73 MALDRHGQTAAHLACEHRSPTC-LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 253 VQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA 295
VQ L+E+ GAD++ D G L +A +++ L+ GA
Sbjct: 132 VQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Score = 63.6 bits (156), Expect = 5e-12
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 196 ESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRG 248
LD +N + V+ L + + +I+ +D ++G + L A +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQET-VQLLLE-RGADIDAVDIKSGRSPLIHAVENN 161
Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L +VQ L++ GA+VN G L A L+ LV SGA
Sbjct: 162 SLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Score = 60.9 bits (149), Expect = 4e-11
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ N + V+ L + LD +G H AC+ ++
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSV-VRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 256 LIEKCGA----DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ A D+ + DG L A E + ++ L+ GA
Sbjct: 98 LLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140
Score = 58.2 bits (142), Expect = 3e-10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIE---KCGADVNVTDSDGDYGLDYAKAIEHTDL 286
+ DE+G LH A +G+L V L+ + G ++++ ++ L A +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 287 IEYLVNSGA 295
+ LV +GA
Sbjct: 62 VRLLVTAGA 70
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 67.9 bits (167), Expect = 4e-14
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNC-LHWACDRGHLKVVQH 255
N N Y G + + L N D L +H A G L +
Sbjct: 39 NAPNSYGRRPIQVMMMGSARV-AELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L GA ++V D+ G +D A+ + H D+ YL +
Sbjct: 97 LHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Score = 63.7 bits (156), Expect = 1e-12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
E + L A RG ++ V+ L+E GA+ N +S G + + + E L+
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVM-MMGSARVAELLLLH 66
Query: 294 GA 295
GA
Sbjct: 67 GA 68
Score = 62.9 bits (154), Expect = 2e-12
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A G+++ V+ L + N N + G + G +V + L+ GA+ N D
Sbjct: 20 AARGRVEE-VRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADP 75
Query: 270 DGDYG-LDYAKAIEHTDLIEYLVNSGA 295
+ A D + L +GA
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGA 102
Score = 53.6 bits (130), Expect = 4e-09
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
N + A+EG LD + L + ++ D G + A + GH V +
Sbjct: 71 NCADPATLTRPVHDAAREGFLDT-LVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 255 HLIEKCGADVNVTDSDG 271
+L ++
Sbjct: 129 YLRAA-AGGTRGSNHAR 144
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 68.6 bits (169), Expect = 7e-14
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
K+ + A G L + ++ L L +N D+ G L A GH
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKL-IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
L+EK GA+ ++ D+ G D A + + ++ +N
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 64.0 bits (157), Expect = 3e-12
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
D N+ + ++ + L + ++ D+ LH A G LK++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEV-SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NSGA 295
+ L + VN D G L +A A H D LV GA
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Score = 62.1 bits (152), Expect = 1e-11
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNIN---QLDENGLNCLHWACDRGHLKV 252
+K+ ++ L K N+N D++G H AC G+L+V
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEI-TSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 253 VQHLIEK-CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ L ++ D+N + G L A + ++ ++L+ +GA
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Score = 61.7 bits (151), Expect = 2e-11
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
E + + + L K + Q D++G LHW+ ++ L+ K +VN+ D
Sbjct: 10 CMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDY 67
Query: 270 DGDYG---LDYAKAIEHTDLIEYLVNSGA 295
D G A ++ + ++++ L +
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Score = 54.0 bits (131), Expect = 9e-09
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LH AC VQ L+ + + D DG L ++ + + ++ +L++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 68.4 bits (168), Expect = 8e-14
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
+ EG+ D+ V+++ + + + ++ G+ LH A GH ++V+ L++ G +VN DS
Sbjct: 45 SLEGEFDL-VQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADS 101
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
DG L A + + + ++LV SGA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 65.7 bits (161), Expect = 7e-13
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ N G ++ VK L + N+N D +G LH A +++V +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEI-VKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 256 LIEKCGADVN-VTDSDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
L+E GA V +T SD D + +E +T ++L
Sbjct: 122 LVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Score = 61.9 bits (151), Expect = 2e-11
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
+ + + + L L + G +VQ +I + D ++ +
Sbjct: 13 KRTNLRKT-GSERIA-HGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPND 68
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
+G L A HT+++++LV G
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGV 94
Score = 56.5 bits (137), Expect = 1e-09
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 12/94 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC---LHWACDRGHLKV 252
N + W A + + K L + + + + + + G+ +
Sbjct: 97 NAADSDGWTPLHCAASCNNVQV-CKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
Q L + + + Y L + +L
Sbjct: 155 SQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDEL 187
Score = 54.2 bits (131), Expect = 7e-09
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
+ G L K I G V L + DL++ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYE 59
Query: 294 GA 295
Sbjct: 60 VD 61
Score = 28.3 bits (64), Expect = 2.6
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
E +EG + L + +++ + L + L K G +
Sbjct: 143 KCEEMEEGYTQC-SQFLYG-VQEKMGIMNKGVIYALWDYEPQNDD----ELPMKEGDCMT 196
Query: 266 VTDSDGDYGLDYAKA 280
+ + + +++ A
Sbjct: 197 IIHREDEDEIEWWWA 211
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 65.5 bits (161), Expect = 1e-13
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N ++G LH A GH ++V+ L+ K GADVN DG+ AK H ++++
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVK 92
Query: 289 YLVNSGA 295
L GA
Sbjct: 93 LLDAKGA 99
Score = 59.7 bits (146), Expect = 1e-11
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++G LH A GH + V+ L+ K GADVN DG+ L A H ++++
Sbjct: 3 MWG--SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 60 LLLAKGA 66
Score = 57.8 bits (141), Expect = 5e-11
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N ++ AK G ++ VK L K ++N ++G H A GH ++V+
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEI-VKLLLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Query: 256 LIEKCGADVNVTDSDGDYGLDY 277
L K GADVN + +
Sbjct: 94 LDAK-GADVNARSWGSSHHHHH 114
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 67.8 bits (167), Expect = 1e-13
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++ +D+ + A G + + L+E G DV D + L +A DL++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVK 59
Query: 289 YLVNSGA 295
Y ++ GA
Sbjct: 60 YYISKGA 66
Score = 66.3 bits (163), Expect = 6e-13
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ Y + G + ++L + +++ Q D+ + LHWA + +V++
Sbjct: 3 THIDDYSTWDIVKATQYGIYER-CRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 256 LIEKCGADVNVTDSD-GDYGLDYAKAIEHTDLIEYLVNSGA 295
I K GA V+ D L +A H ++ L+ GA
Sbjct: 61 YISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Score = 64.0 bits (157), Expect = 3e-12
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 229 NINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
++N D+ + LHWA G+ V+ L+E GA+V+ + G+ LD AK ++ +I
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMI 226
Query: 288 EYLVNSGA 295
+L +
Sbjct: 227 NHLQEARQ 234
Score = 63.6 bits (156), Expect = 5e-12
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
++G L M V QL K + + +D G +C+H A GH +V +LI K G DV++ D
Sbjct: 84 TRQGHLSM-VVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQ 140
Query: 270 DGDYGLDYAKAIEHT-DLIEYLVNSGA 295
+G L +A H+ D L+
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Score = 59.4 bits (145), Expect = 1e-10
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQ 254
+ + A+ G + V L K +++ +D+NG+ L WA R H + +
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSI-VAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 255 HLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ VN+ D + L +A +T +I L+ +GA
Sbjct: 161 LLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
Score = 42.0 bits (100), Expect = 8e-05
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
N++ + G + L A R ++ ++ HL E +
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEA-RQAKGYDN 240
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 66.2 bits (163), Expect = 2e-13
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + A G L++ V+ L K ++N D G LH A GHL++V+
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEI-VEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
L++ GADVN D G D + + DL E L
Sbjct: 132 LLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 65.5 bits (161), Expect = 3e-13
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N ++ W A G L++ V+ L K ++N +D G+ L A GHL++V+
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEI-VEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GADVN D +G L A H +++E L+ +GA
Sbjct: 99 LLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 64.7 bits (159), Expect = 6e-13
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A+ G+ D V+ L ++N D +G LH A GHL++V+ L++ GADVN D
Sbjct: 22 ARAGRDDE-VRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDH 78
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
G L A H +++E L+ +GA
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 56.2 bits (137), Expect = 5e-10
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
+ + + L A G V+ L+ GADVN D+ G L A H ++
Sbjct: 5 HHHHHH-GSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 287 IEYLVNSGA 295
+E L+ +GA
Sbjct: 63 VEVLLKNGA 71
Score = 42.7 bits (102), Expect = 3e-05
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N ++ A G L++ V+ L K ++N D+ G + D G+ + +
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEI-VEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 256 LIEK 259
L +
Sbjct: 165 LQKL 168
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 67.5 bits (166), Expect = 3e-13
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + A +D L K N + + L A G + +
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDA-AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
L++ A+ ++TD D A+ H D++ L H +
Sbjct: 209 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251
Score = 64.0 bits (157), Expect = 4e-12
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
D + + A+ M ++ L ++N +D+ G + LHWA ++
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGM-LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GA+ ++ ++ + L A + + L++ A
Sbjct: 174 VVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Score = 62.1 bits (152), Expect = 2e-11
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 201 DNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
N+ + A+ + D K+L + + N D G LH A V Q
Sbjct: 50 HNQTDRTGETALHLAARYSRSDA-AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LI D++ DG L A + ++E L+NS A
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Score = 47.5 bits (114), Expect = 1e-06
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 229 NINQLDENGLNCLHWACDRG-------------HLKVVQHLIEKCGADV-NVTDSDGDYG 274
++N +G L A G V+ I + GA + N TD G+
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETA 60
Query: 275 LDYAKAIEHTDLIEYLVNSGA 295
L A +D + L+ + A
Sbjct: 61 LHLAARYSRSDAAKRLLEASA 81
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 65.5 bits (161), Expect = 3e-13
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ K+ G ++ + L K +N D LH A +G ++ +
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEV-AELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GAD + DG+ LD TD+ + L A
Sbjct: 127 LLQH-GADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 65.1 bits (160), Expect = 4e-13
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
AK G ++ VK+L ++ N ++ LH+A + VV++L++ GADV+ D
Sbjct: 16 AKAGDVET-VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDK 73
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
G L A + H ++ E LV GA
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGA 99
Score = 64.7 bits (159), Expect = 5e-13
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
+ + + A ++ + V+ L + +++ D+ GL LH AC GH +V
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSV-VEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L++ GA VNV D L A A ++ + L+ GA
Sbjct: 92 ELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Score = 53.9 bits (131), Expect = 4e-09
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
+ L A G ++ V+ L + + L +A ++EYL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 294 GA 295
GA
Sbjct: 65 GA 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 64.7 bits (159), Expect = 4e-13
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + + A EG ++ V+ L K ++N D + LHWA + H +VV+
Sbjct: 61 DARTKVDRTPLHMAASEGHANI-VEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
LI+ GADV+ D + + DL E L
Sbjct: 119 LIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 60.5 bits (148), Expect = 1e-11
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ + + LH A GH +V+ L++ GADVN D L +A H +++E
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 118 LLIKYGA 124
Score = 55.9 bits (136), Expect = 6e-10
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
D G + LH A GH + L+ G + L A + H +++E
Sbjct: 27 PFTT-DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 85 VLLKHGA 91
Score = 47.0 bits (113), Expect = 8e-07
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L A G V+ L+ GA TD G L A H E L+ +G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR
{Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Length = 75
Score = 62.5 bits (153), Expect = 5e-13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
A +MFDK T +GFGFVTF++++ V+KV H +
Sbjct: 29 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 64.7 bits (159), Expect = 5e-13
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
+ N + G + +L K + + N D +G + +H A G L ++ L
Sbjct: 30 DALNRFGKTALQVMMFGSTAI-ALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87
Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+E GADVNV D G + A HT ++ +L + +
Sbjct: 88 VEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AES 124
Score = 63.2 bits (155), Expect = 2e-12
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A G + V++L + + + L+ G L G + L+++ GA NV D+
Sbjct: 10 AARGDVQE-VRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDT 66
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
G + A D ++ LV GA
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGA 92
Score = 63.2 bits (155), Expect = 2e-12
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N ++ A+ G LD +K L + ++N D G +H A GH VV
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDT-LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
L +D++ D+ G L+ A DL++ L
Sbjct: 120 LAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 60.1 bits (147), Expect = 2e-11
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L A RG ++ V+ L+ + + + G L T + L+ GA
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGA 59
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 65.9 bits (162), Expect = 6e-13
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + A +D L K N + + L A G + +
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDA-AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ A+ ++TD D A+ H D++ L
Sbjct: 177 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 63.2 bits (155), Expect = 4e-12
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
D + + A+ M ++ L ++N +D+ G + LHWA ++
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGM-LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
L++ GA+ ++ ++ + L A + + L++ A+
Sbjct: 142 VVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Score = 62.4 bits (153), Expect = 9e-12
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 201 DNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
N+ + A+ + D K+L + + N D G LH A V Q
Sbjct: 18 HNQTDRTGETALHLAARYSRSDA-AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQ 75
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LI D++ DG L A + ++E L+NS A
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Score = 44.7 bits (107), Expect = 1e-05
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ +N E A+EG + K L N + D A +R H +V+
Sbjct: 152 DMQNNREETPLFLAAREGSYET-AKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRL 209
Query: 256 LIEKCGADVN 265
L E +
Sbjct: 210 LDEY-NLVRS 218
Score = 35.5 bits (83), Expect = 0.010
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 248 GHLKVVQHLIEKCGADV-NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ I + GA + N TD G+ L A +D + L+ + A
Sbjct: 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 49
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 64.4 bits (158), Expect = 1e-12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A++ + QL L+D +++ +DENG L + G K V+ L E GAD++ D
Sbjct: 52 ARKADEQA-LSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDM 107
Query: 270 -DGDYGLDYAKAIEHTDLIEYLVNSGA 295
G L A +++E LV GA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGA 134
Score = 62.9 bits (154), Expect = 3e-12
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKV 252
D + + A G V+ L + +++ D GL LH A +V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKC-VRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ L+E GAD+ V D G L+ A+ I T + G
Sbjct: 126 VEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167
Score = 53.3 bits (129), Expect = 9e-09
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
A + + + L+E DV+ D +G L + + + L +
Sbjct: 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98
Query: 294 GA 295
GA
Sbjct: 99 GA 100
Score = 43.6 bits (104), Expect = 2e-05
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+I DE GL L A + + ++ G + +
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQF-GRRIGLEK 173
Score = 39.0 bits (92), Expect = 6e-04
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 5/72 (6%)
Query: 224 KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 283
++ ++ G GH ADV S+ + A
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVV---SEYETPWWTAARKAD 56
Query: 284 TDLIEYLVNSGA 295
+ L+
Sbjct: 57 EQALSQLL-EDR 67
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 65.5 bits (161), Expect = 1e-12
Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ K + + + VK+L + ++NQ + + LH ++
Sbjct: 128 DHKISHLGTPLYLACENQQRAC-VKKLLE-SGADVNQ-GKGQDSPLHAVARTASEELACL 184
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GAD +++G ++ + L + +
Sbjct: 185 LMDF-GADTQAKNAEGKRPVELVP--PESPLAQLFLEREG 221
Score = 65.1 bits (160), Expect = 2e-12
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A G ++ L + + +N + + ++ LH AC GHL V+ L++ GA VN +
Sbjct: 11 AIHGHQLS-LRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTA 67
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L A D + L+ GA
Sbjct: 68 DWHTPLFNACVSGSWDCVNLLLQHGA 93
Score = 63.2 bits (155), Expect = 7e-12
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N G D V L + ++ + + + +H A RGH++ V
Sbjct: 63 NGVTADWHTPLFNACVSGSWDC-VNLLLQ-HGASVQP-ESDLASPIHEAARRGHVECVNS 119
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LI G +++ S L A + ++ L+ SGA
Sbjct: 120 LIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Score = 62.1 bits (152), Expect = 2e-11
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A+ G ++ V L NI+ + L+ AC+ V+ L+E GADVN
Sbjct: 109 ARRGHVEC-VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGK 164
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L +L L++ GA
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGA 190
Score = 56.3 bits (137), Expect = 2e-09
Identities = 4/67 (5%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ + G + + Q +E+ ++ +H + +
Sbjct: 191 DTQAKNAEGKRPVELVPPESP--LAQLFLER-EGPPSLMQLCRLRIRKCFGIQQHHKITK 247
Query: 289 YLVNSGA 295
++
Sbjct: 248 LVLPEDL 254
Score = 55.5 bits (135), Expect = 3e-09
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ + +H A GH +++LI + G VN+ +D L A H ++ L+ GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Score = 40.1 bits (95), Expect = 5e-04
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
KN E L + + ++ + + L + H K+ +
Sbjct: 193 QAKNAEGKRPVELVPPESPL---AQLFLE-REGPPSLMQLCRLRIRKCFGIQQHHKITKL 248
Query: 256 LIEK 259
++ +
Sbjct: 249 VLPE 252
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding
protein, hnRNP, telomere, DNA-binding protein, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wtb_A 1x0f_A
Length = 75
Score = 61.4 bits (150), Expect = 1e-12
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 43
+ D T +GF F+TF+ +E V K+ H + S+
Sbjct: 29 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 63.9 bits (157), Expect = 2e-12
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K+ G +M L + N+N + G L A G ++V+
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEM-SYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
L+E GAD++ D G A+ ++I+
Sbjct: 153 LLEL-GADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 63.2 bits (155), Expect = 3e-12
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+K+I K +L + ++L K N+N D +G L W+ G+ ++
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGI-AEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+E GA+VN + +G+ L A +++++ L+ GA
Sbjct: 120 LLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 62.4 bits (153), Expect = 6e-12
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
DF N D L AC G + L+E + D +G L +A +
Sbjct: 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 287 IEYLVNSGA 295
E L++ G+
Sbjct: 84 AEKLLSKGS 92
Score = 40.5 bits (96), Expect = 2e-04
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N++N+ +K G+ ++ VK+L + +I+ D GL A G +V++
Sbjct: 128 NDRNLEGETPLIVASKYGRSEI-VKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 256 LIE 258
E
Sbjct: 186 FTE 188
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR
{Mus musculus} SCOP: d.58.7.1
Length = 77
Score = 61.0 bits (149), Expect = 2e-12
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D T S+GFGFVTF ++ VDKV + H L+
Sbjct: 28 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 99
Score = 61.4 bits (150), Expect = 2e-12
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
+++D +GFGF+TF+++++VD+ + H + G
Sbjct: 38 TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 64.5 bits (158), Expect = 2e-12
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTK-----LKDFNINQLDENGLNCLHWACDRGHL 250
++ ++G L V LT+ + + NG CLH A G+L
Sbjct: 72 ELRDFRGNTPLHLACEQGCLAS-VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130
Query: 251 KVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+V+ L+ GADVN + +G L A +++ DL+ L+ GA
Sbjct: 131 GIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Score = 62.2 bits (152), Expect = 1e-11
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 194 NDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACD 246
N + G L + V+ L ++N + NG LH A D
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGI-VELLVS-LGADVNAQEPCNGRTALHLAVD 160
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ +V L++ GADVN G T + + L
Sbjct: 161 LQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208
Score = 57.2 bits (139), Expect = 7e-10
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N +N + + ++ + L + D G LH AC++G L V
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEI-AEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 256 LIEKC-----GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L + C + + T+ +G L A + ++E LV+ GA
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
Score = 56.4 bits (137), Expect = 1e-09
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+N + LH A ++ + L+ G D + D G+ L A +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 289 YLVNSGA 295
L S
Sbjct: 96 VLTQSCT 102
Score = 53.7 bits (130), Expect = 1e-08
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N++ G + R ++ Q L + + + + Y E T+ E
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 47.2 bits (113), Expect = 2e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 232 QLDENGLNCLHWACDRGH----LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
QL E+G + LH A ++V++ + A +N ++ L A ++
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 288 EYLVNSGA 295
E L+ +G
Sbjct: 62 EALLGAGC 69
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 65.2 bits (160), Expect = 2e-12
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
K G + V +L + + +IN + +GL LH AC ++ +V+ L
Sbjct: 35 KVKFDDGAVFLAACSSGDTEE-VLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFL 92
Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+E GA++N D++G L A + + D+ EYL++ GA
Sbjct: 93 VEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Score = 62.1 bits (152), Expect = 3e-11
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
+D A +G ++ +K L + +++N D +G LH A G +
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEV-LKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L+E D+ + G D A L E
Sbjct: 249 RILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Score = 61.4 bits (150), Expect = 5e-11
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
D E + D +Q N + ++G LH A +G+ +V++ LI+
Sbjct: 165 DIEAARKEEE-RIMLRD--ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
DVN+ D DG L A + LV +
Sbjct: 222 -RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Score = 55.2 bits (134), Expect = 5e-09
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N+ + W A G LD+ + L + ++ ++ G L A + +++Q+
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDI-AEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ + G D+ + + + D ++L +
Sbjct: 158 EVNRQGVDIEAARKEEERIM-------LRDARQWLNSGHI 190
Score = 47.9 bits (115), Expect = 1e-06
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 289
+ D G ++ + K V DG A + T+ +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVK-RKKTKVKFDDG-AVFLAACSSGDTEEVLR 58
Query: 290 LVNSGA 295
L+ GA
Sbjct: 59 LLERGA 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA
complex, RRM, RBD, RNA binding protein- complex; NMR
{Mus musculus}
Length = 109
Score = 61.5 bits (150), Expect = 2e-12
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
VM D T S+GFGFVTF ++ VDKV + H L+
Sbjct: 55 CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 93
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 65.6 bits (161), Expect = 2e-12
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+N+ +++ + LH A +R H V++ L + GA +N DS G L A H
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 289 YLVNSGA 295
L++ G+
Sbjct: 298 LLLSYGS 304
Score = 62.9 bits (154), Expect = 2e-11
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + + A ++ + V+ L + +++ D+ GL LH AC GH +V +
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRI-VQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GA VN D L A + ++ L++ GA
Sbjct: 110 LLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 62.5 bits (153), Expect = 2e-11
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
NEKN A+ D+ ++ L K +N LD G LH A GHL+ +
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDV-MEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ G+D ++ G + ++ +++
Sbjct: 299 LLSY-GSDPSIISLQGFTAAQMG-----NEAVQQILSEST 332
Score = 56.0 bits (136), Expect = 3e-09
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQ 254
+ ++ + A+E L + K L + + ++ LH A H +V +
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L+ K GA+VN + D L A H D++E L GA
Sbjct: 232 LLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Score = 54.4 bits (132), Expect = 1e-08
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 229 NINQLDENGLNCLHWACDRGHLK-VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
E + L A G+ + ++ L + + +D L A ++
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIV 74
Query: 288 EYLVNSGA 295
+ L+ GA
Sbjct: 75 QLLLQHGA 82
Score = 49.0 bits (118), Expect = 7e-07
Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 31/123 (25%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N +++++ A + ++++ L + ++ +G + + A + + +
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEV-CSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 256 LIEK--------------------CGADVNVTDSDGDYGLDYAKAIEH---TDLIEYLVN 292
+ + L A A H + E L+
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 293 SGA 295
GA
Sbjct: 236 KGA 238
Score = 38.2 bits (90), Expect = 0.002
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + A G L + L + + + G + VQ
Sbjct: 274 NALDSLGQTALHRAALAGHLQT-CRLLLS-YGSDPSIISLQGFTAAQMGNE-----AVQQ 326
Query: 256 LIEKCGADVNVTDSDG 271
++ + + +D D
Sbjct: 327 ILSE-STPMRTSDVDY 341
Score = 33.2 bits (77), Expect = 0.082
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 4/47 (8%)
Query: 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
K L + A +T L A A L+ L
Sbjct: 5 KSALDLADP-SAKAVLTGEYKKDELLEA-ARSGNEEKLMALLTPLNV 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 116
Score = 61.5 bits (150), Expect = 3e-12
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
A V+ D+ TG S+G+GFVT ++ A ++ + +++G
Sbjct: 47 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 63.2 bits (154), Expect = 3e-12
Identities = 7/73 (9%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 229 NINQLDENGLNCLHWACDRGHL------KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
+I L + + + + + + + G + + D G L++ K +
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 283 HTDLIEYLVNSGA 295
++ + +
Sbjct: 166 KPIALKMMEDYIK 178
Score = 52.4 bits (126), Expect = 2e-08
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+ + A G + ++ K + + L D K+ LI K
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 260 CGADVNVTDSDGDYGLDYA------KAIEHTDLIEYLVNSGA 295
GAD+ +G T+L + + GA
Sbjct: 65 -GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Score = 51.6 bits (124), Expect = 3e-08
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 7/68 (10%)
Query: 229 NINQLDENGLNCLHWACDRGHLKV------VQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
+I + G G + + +EK GAD+ +
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNY 125
Query: 283 HTDLIEYL 290
D E +
Sbjct: 126 FVDENEMI 133
Score = 51.6 bits (124), Expect = 4e-08
Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 12/80 (15%)
Query: 202 NEKNIYEW------AKEGKLDM-----LVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250
+D L K + + D+ GL L +
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 251 KVVQHLIEKCGADVNVTDSD 270
++ + + N+ ++
Sbjct: 168 IALKMMEDY-IKKYNLKENS 186
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 64.8 bits (159), Expect = 3e-12
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A G ++ L + + +N + + ++ LH AC GHL V+ L++ GA VN +
Sbjct: 67 AIHGHQLS-LRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTA 123
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L A D + L+ GA
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGA 149
Score = 63.3 bits (155), Expect = 9e-12
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N G L VK L K +N + + L AC G V
Sbjct: 86 NIITADHVSPLHEACLGGHLSC-VKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNL 143
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GA V +SD + A H + + L+ G
Sbjct: 144 LLQH-GASVQ-PESDLASPIHEAARRGHVECVNSLIAYGG 181
Score = 61.4 bits (150), Expect = 4e-11
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A+ G ++ V L NI+ + L+ AC+ V+ L+E GADVN
Sbjct: 165 ARRGHVEC-VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGK 220
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
D L +L L++ GA
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGA 246
Score = 59.4 bits (145), Expect = 2e-10
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ K + + + VK+L + ++NQ + + LH ++
Sbjct: 184 DHKISHLGTPLYLACENQQRAC-VKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACL 240
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GAD +++G ++ +L GA
Sbjct: 241 LMDF-GADTQAKNAEGKRPVELVPPESPLA-QLFLEREGA 278
Score = 57.9 bits (141), Expect = 7e-10
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
D + + G D + + + +H A GH +++LI +
Sbjct: 25 DGKQGGMDGSKPAGPRD-FPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQ 81
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
G VN+ +D L A H ++ L+ GA
Sbjct: 82 -GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Score = 41.3 bits (98), Expect = 2e-04
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 267
+ + G + L + +E+ GA +
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL--FLEREGASLPKP 283
Score = 39.8 bits (94), Expect = 5e-04
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
H L+ + G+ + D G+D +K D + S +
Sbjct: 2 GSSHHHHHHSSGLVPR-GSHMASMDGKQG-GMDGSKPAGPRDFPGIRLLSNPLMGDA 56
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure
genomics, RRM domain, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: d.58.7.1
Length = 116
Score = 61.1 bits (149), Expect = 4e-12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 44
+ VM D + S+GFGFVTF + VD + H ++G +
Sbjct: 55 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV 98
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP
A1, RNA-recognition motif, RNA- binding, UP1, RNA
binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1
d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A
1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A*
1up1_A
Length = 196
Score = 62.7 bits (153), Expect = 5e-12
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET 62
VM D NT S+GFGFVT+ E VD + H ++G + + + S +
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 102
Query: 63 K 63
Sbjct: 103 T 103
Score = 61.2 bits (149), Expect = 2e-11
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI---QPSDSHNSQ 55
+M D+ +G +GF FVTF + ++VDK+ H + G + S
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 60.3 bits (147), Expect = 5e-12
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
+M DK T S+GFGFV F++ V V ++ H L+G
Sbjct: 46 CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 61.2 bits (150), Expect = 5e-12
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N K+ Y G L++ V+ L K ++N +D G LH A GHL++ +
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEI-VEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
L++ GADVN D G D + + DL E L
Sbjct: 99 LLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 60.9 bits (149), Expect = 6e-12
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N DE GL L+ A GHL++V+ L++ GADVN D+ G L A I H ++ E
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 289 YLVNSGA 295
L+ GA
Sbjct: 98 VLLKHGA 104
Score = 52.4 bits (127), Expect = 6e-09
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
+ + + L A G V+ L+ GADVN D G L A A H ++
Sbjct: 5 HHHHHH-GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 287 IEYLVNSGA 295
+E L+ +GA
Sbjct: 63 VEVLLKNGA 71
Score = 39.3 bits (93), Expect = 3e-04
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
N + + A G L++ + L K ++N D+ G + G+ + +
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEI-AEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 256 LIE 258
L +
Sbjct: 132 LQK 134
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 60.3 bits (147), Expect = 6e-12
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++ D+NG LH A GHL+VV+ L+E GADV D G D + + DL E
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAE 107
Query: 289 YL 290
L
Sbjct: 108 IL 109
Score = 58.0 bits (141), Expect = 5e-11
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++ + L A G V+ L+ GADV D +G L A H ++++
Sbjct: 19 HMG---SDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 289 YLVNSGA 295
L+ +GA
Sbjct: 75 LLLEAGA 81
Score = 43.3 bits (103), Expect = 6e-06
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
H L+ + G+ + SD L A D + L+ +GA
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGA 48
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding,
RNA processing, mRNA processing, nonsense-mediated mRNA
decay, cleavage; NMR {Saccharomyces cerevisiae} PDB:
2km8_C
Length = 167
Score = 61.8 bits (151), Expect = 6e-12
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
+A +M DK+TG S+GFGFVT+ + +AVD+V + ++ I
Sbjct: 116 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 160
Score = 59.5 bits (145), Expect = 4e-11
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK-KK 59
+ +M D TG S+GFGF++F+ +VD+V H+L+G + + + + Q K K
Sbjct: 31 TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQDKTGK 89
Query: 60 I 60
I
Sbjct: 90 I 90
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 64.2 bits (156), Expect = 7e-12
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 208 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 267
LD L LT D + + A + GHL V+ L E +
Sbjct: 101 ITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMA 157
Query: 268 D--SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
++ + A H ++ L
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAP 187
Score = 60.3 bits (146), Expect = 1e-10
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLK-DFNINQLDENGLNCLHWACDRGHLKV 252
+ A+ G L + + +L +L + + + A + GHL V
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHV-LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 178
Query: 253 VQHLIEKCGADVNVTD--SDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
+ L E ++ Y +A A+ H ++I +L++
Sbjct: 179 LNRLCEL-APTEATAMIQAENYYAFRWA-AVGRGHHNVINFLLDCPV 223
Score = 51.1 bits (122), Expect = 1e-07
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ + L A G+ L+ + + +T ++ Y + DL
Sbjct: 311 PTATIPGDANELLRLALRLGNQGACALLLSI-PSVLALTKANNYY---INETGGRLDLRA 366
Query: 289 YLVNSGAH 296
+ H
Sbjct: 367 VALEHHHH 374
Score = 46.9 bits (111), Expect = 3e-06
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 6/140 (4%)
Query: 160 DKEQEEINWDESQESGSKENEGQTKGWVNVSS--MINDESQLDDNEKNIYEW--AKEGKL 215
D + I W + + +S I+ N + + +
Sbjct: 15 DPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHY 74
Query: 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275
+ KQL + + C L + L+ V V ++
Sbjct: 75 NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA-LDTLCLLLTS-DEIVKVIQAENYQAF 132
Query: 276 DYAKAIEHTDLIEYLVNSGA 295
A H ++ L
Sbjct: 133 RLAAENGHLHVLNRLCELAP 152
Score = 41.9 bits (98), Expect = 2e-04
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 11/89 (12%)
Query: 210 AKEGKLDMLVKQL-TKLKDFNINQLDENGLNCLHWAC-DRGHLKVVQHLIEKCGADVNVT 267
A+ G L + + +L + WA RGH V+ L++ +
Sbjct: 171 AENGHLHV-LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLA-- 226
Query: 268 DSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
Y + + ++
Sbjct: 227 -----YAEIHEFEYGEKYVNPFIARHVNR 250
Score = 40.3 bits (94), Expect = 5e-04
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 231 NQLDENGLNCLHWACDRGH---LKVVQHLIE----KCGADVNVTDSDGDYGLDYAKAIEH 283
G L R L ++ L+ K A D + L A + +
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Query: 284 TDLIEYLVNSGA 295
L++ +
Sbjct: 332 QGACALLLSIPS 343
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 63.3 bits (155), Expect = 9e-12
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
W + + V L + L+C+H GH+ ++
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSI-VSYF--LSEIPSTFDLAILLSCIHITIKNGHVDMMI 178
Query: 255 HLIEKCGADVNVTDSDGD-YGLDYAKAIEHTDLIEYLVNSGA 295
L++ N +S + A + ++++ L
Sbjct: 179 LLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219
Score = 63.3 bits (155), Expect = 1e-11
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A + VK L + +Q D+ G L++A D G+++ V+ ++K +
Sbjct: 70 ATLEDTKI-VKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGK 126
Query: 270 DGDY-GLDYAKAIEHTDLIEYLVNSGA 295
G +A + ++ Y ++
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIP 153
Score = 60.2 bits (147), Expect = 8e-11
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
+K L + + D +G + ++A ++++V L+ GA N+ + ++ L A
Sbjct: 15 LKSF--LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQA 69
Query: 279 KAIEHTDLIEYLVNSGA 295
+E T +++ L+ SG
Sbjct: 70 ATLEDTKIVKILLFSGL 86
Score = 47.5 bits (114), Expect = 2e-06
Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 21/106 (19%)
Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
N N + ++M ++ L K D NI + ++ +
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEM-LQALFK-YDINIY-------SANLENVLLDDAEIAK 238
Query: 255 HLIEKCGADVNVTDSDGD----YGLDYAKAIEHTDLIEYLVNSGAH 296
+IEK + D + I + + +
Sbjct: 239 MIIEK-HVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like,
structural genomics, joint center for struc genomics,
JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Length = 87
Score = 58.7 bits (143), Expect = 1e-11
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
++ D NTG S+GFGF+ F++ +V+KV H L+G
Sbjct: 41 CTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG 79
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 62.2 bits (152), Expect = 1e-11
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
A++ + QL L+D +++ +DENG L + G K V+ L E GAD++ D
Sbjct: 53 ARKADEQA-LSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDM 108
Query: 270 -DGDYGLDYAKAIEHTDLIEYLVNSGA 295
G L A +++E LV GA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGA 135
Score = 62.2 bits (152), Expect = 1e-11
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKV 252
D + + A G V+ L + +++ D GL LH A +V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKC-VRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
V+ L+E GAD+ V D G L+ A+ I T + G
Sbjct: 127 VEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168
Score = 52.6 bits (127), Expect = 3e-08
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
A + + + L+E DV+ D +G L + + + L +GA
Sbjct: 49 WWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Score = 48.4 bits (116), Expect = 7e-07
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+I DE GL L A + + ++ G + + + + E+ ++ E
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQF-GRRIGLEKVI---NVLEGQVFEYAEVDE 191
Query: 289 YLVNSGA 295
+ G
Sbjct: 192 IVEKRGK 198
Score = 38.0 bits (89), Expect = 0.002
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
I + G + + + A+ D + GL+YA
Sbjct: 191 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH-VAEDVA--KDYEDGLEYA 237
Score = 36.4 bits (85), Expect = 0.007
Identities = 9/69 (13%), Positives = 15/69 (21%), Gaps = 5/69 (7%)
Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
++ G GH ADV S+ + A
Sbjct: 5 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVV---SEYETPWWTAARKADEQA 60
Query: 287 IEYLVNSGA 295
+ L+
Sbjct: 61 LSQLL-EDR 68
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 61.4 bits (150), Expect = 3e-11
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQ 254
+N +M V+ L ++N+ + G LH A + V++
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEM-VRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L++ GAD G L A + L L GA
Sbjct: 210 LLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 59.1 bits (144), Expect = 2e-10
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG---LDYAKAIEHTD 285
+ + +G LH A ++V+ L + GAD+N + G L A +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKP--EPTCGRTPLHLAVEAQAAS 206
Query: 286 LIEYLVNSGA 295
++E L+ +GA
Sbjct: 207 VLELLLKAGA 216
Score = 59.1 bits (144), Expect = 2e-10
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+ G L A R + + + L GA D + + +D +
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSDNRD 275
Query: 289 YL 290
Sbjct: 276 EG 277
Score = 57.9 bits (141), Expect = 6e-10
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++ ++ G LH A G V+ L GA V V + G L A +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCAC 95
Query: 289 YLVNSGA 295
L+
Sbjct: 96 VLLQPRP 102
Score = 54.5 bits (132), Expect = 8e-09
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGLDYAKAIEHTDL 286
+ E+G LH A H + L+ A +++ + G L A +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 287 IEYLVNSGA 295
+E L +GA
Sbjct: 61 VEKLYAAGA 69
Score = 51.4 bits (124), Expect = 9e-08
Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 23/114 (20%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ +N A G+ V++L + + G LH AC
Sbjct: 39 DLQNDLGQTALHLAAILGEAST-VEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACV 96
Query: 256 LIEKCGADVNVTDSDGDYGLD--------------YAKAIEHTDLIEYLVNSGA 295
L++ SD ++ + +
Sbjct: 97 LLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149
Score = 34.8 bits (81), Expect = 0.025
Identities = 3/63 (4%), Positives = 10/63 (15%), Gaps = 8/63 (12%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
+ + + L + + L+ +
Sbjct: 219 TARMYGGRTPLGSALLRPNPIL-ARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Query: 256 LIE 258
E
Sbjct: 277 GDE 279
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM,
RNA binding domain, RBD, RNP, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 57.6 bits (140), Expect = 5e-11
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
V D TG SKGFGFV F E KV S H+++G
Sbjct: 45 VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDG 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 55.0 bits (133), Expect = 5e-10
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
+ ++ D+N+ SKG +V F ++V L G + +Q S +
Sbjct: 54 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 56.8 bits (137), Expect = 8e-10
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
+ I A GKLD L +++ + D++ LHWAC GH ++V+ L++
Sbjct: 5 VSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL- 62
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
G VN D G L A + ++++ L+ GA
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Score = 51.4 bits (123), Expect = 6e-08
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
+ N +++ + ++ A +G L M+ + + N D G LH ACD
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMV--HILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
++ + L+ + GA + + + + L AK LI + G
Sbjct: 184 RVEEAKFLVTQ-GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 57.1 bits (138), Expect = 9e-10
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 222 LTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
L + G + LH A ++ L+ V+ L+E GADV++ +
Sbjct: 75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCF 133
Query: 282 E-------------HTDLIEYLVNSGAHSSN 299
D++ YL+ + ++
Sbjct: 134 YFGELPLSLAACTKQWDVVTYLLENPHQPAS 164
Score = 52.5 bits (126), Expect = 4e-08
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 19/113 (16%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLK------DFNINQLDENGLNCLHWA---CDRGHLKV 252
+ ++ G + L L L+ + G CL A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 253 VQHLIEKC----------GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ L++ A G L A ++ LV +GA
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Score = 47.9 bits (114), Expect = 1e-06
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
+G L M +L + GL L A G +++ +H++++
Sbjct: 196 MYDGLLQM-GARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAHH 252
Query: 270 DGDY 273
+
Sbjct: 253 HHHH 256
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 39/133 (29%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC------------- 240
++ ++ L VK L + +++
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQC-VKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 241 LHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIE---------------- 282
L A VV +L+E A + TDS G+ L I
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 283 HTDLIEYLVNSGA 295
+ L +
Sbjct: 200 LLQMGARLCPTVQ 212
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 94
Score = 53.5 bits (129), Expect = 1e-09
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKK 59
ASV+ DK+ G F V + A + V S H L G RL ++P + Q
Sbjct: 36 ASVVMDKDKG---VFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPAS 89
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 56.7 bits (137), Expect = 2e-09
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
L + + + G LH A +R ++ +V L+E GADV + +
Sbjct: 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKG 141
Query: 279 KAIE--------------HTDLIEYLVNSGAHSSN 299
+ ++++L+ + ++
Sbjct: 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176
Score = 43.6 bits (103), Expect = 3e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 241 LHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
L A L +V+ L++ AD++ DS G+ L + +
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203
Score = 43.2 bits (102), Expect = 4e-05
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+ + + + ++ +L +L + GL L A G + V+ +++++
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHP-TLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Query: 260 CGADVN 265
Sbjct: 256 -EIHEP 260
Score = 39.8 bits (93), Expect = 6e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 210 AKEGKLDMLVKQLTK--LKDFNINQLDENGLNCLHWACDRGHLKVVQ---------HLIE 258
A +L + VK L + + +I+ D G LH + V ++
Sbjct: 156 ACTNQLAI-VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214
Query: 259 KC------GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
+T+ G L A + ++ Y++ H
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Score = 39.0 bits (91), Expect = 9e-04
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 14/80 (17%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIE------KCGADVNVTDSDGDYG---LDYAK 279
+ A + + + ++ L+ K D D + G L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF--KDPETGKTCLLKAM 62
Query: 280 AIE---HTDLIEYLVNSGAH 296
D I L++
Sbjct: 63 LNLHNGQNDTIALLLDVARK 82
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 15/61 (24%)
Query: 195 DESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
+ + N A GK+ + + + + + + + C H A
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGV-LAYI-------LQR-EIHEPECRHAAAHHH 270
Query: 249 H 249
H
Sbjct: 271 H 271
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 57.0 bits (137), Expect = 2e-09
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF--NINQLDENGLNCLHWACD 246
V + +++ + D +++ L +N D NG CL+ A
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
G++ +V L++ GAD + + G +D+ +E
Sbjct: 293 LGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE 327
Score = 55.4 bits (133), Expect = 6e-09
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 191 SMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKL---KDFNIN-QLDENGLNCLHWACD 246
S+ ND S + + + + D L++++ N+N +DE+G LHW
Sbjct: 81 SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS 140
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDG 271
+L++V+HL++ G++ D+ G
Sbjct: 141 IANLELVKHLVKH-GSNRLYGDNMG 164
Score = 42.7 bits (100), Expect = 7e-05
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Query: 160 DKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWA-KEGKLDML 218
++ E + ++ Q+ S ++ Q ++ +N +D++ W L++
Sbjct: 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLEL- 146
Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNVTDSDGD--- 272
VK L K N D G +CL A + + L++ + + DS
Sbjct: 147 VKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Query: 273 -YGLDYAKAIEHTDLIEYLVNSGAH 296
+ + + + +Y ++
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMG 230
Score = 35.8 bits (82), Expect = 0.012
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK--CGADVNVT 267
A + LD+L+ + K ++ I + + ++++L K +N
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279
Query: 268 DSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
DS+GD L+ A + + +++ L++ GA
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGA 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 54.9 bits (133), Expect = 4e-09
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV----- 264
AKE + L K L K + ++Q G LH A +L+ L+E ++
Sbjct: 11 AKENDVQALSKLL-KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPM 68
Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+G L A ++ +L+ L+ GA
Sbjct: 69 TSELYEGQTALHIAVINQNVNLVRALLARGA 99
Score = 48.8 bits (117), Expect = 4e-07
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKL---KDFNIN------QLDENGLNCLHWACD 246
++ + Q+ L D + + GL A
Sbjct: 148 RAQDSLGNTVLHILILQPNKTF-ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDG 271
G++ + QHL++K +
Sbjct: 207 EGNIVMFQHLMQK-RKHIAAAHHHH 230
Score = 48.0 bits (115), Expect = 9e-07
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIE---KCGADVN------VTDSDGDYGLDYAK 279
+I D G LH + + + + V ++ G A
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 280 AIEHTDLIEYLVNSGAH 296
+ + ++L+ H
Sbjct: 206 VEGNIVMFQHLMQKRKH 222
Score = 46.8 bits (112), Expect = 2e-06
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 24/123 (19%)
Query: 195 DESQLDDNEKNIYEW------AKEGKLDMLVKQL------------TKLKDFNINQLDEN 236
+ + +++ V+ L + + + L
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNL-VRALLARGASVSARATGSVFHYRPHNLIYY 120
Query: 237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD----LIEYLVN 292
G + L +A G ++V+ LIE GAD+ DS G+ L + + L++
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 293 SGA 295
Sbjct: 180 YDG 182
Score = 46.4 bits (111), Expect = 3e-06
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L A ++ + L++ G +V+ + G+ L A ++ + L+ +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA
splicing factor, RNA recognition motif, RNA binding
protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Length = 172
Score = 52.2 bits (126), Expect = 2e-08
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
+++ D TGLSKG+ F + + D+ + + L +L +Q
Sbjct: 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169
Score = 51.5 bits (124), Expect = 3e-08
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ-PSDSHNSQVKKK 59
+ + K F F+ F++ + + + D + +G L I+ P D K
Sbjct: 37 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHK 96
Query: 60 I 60
+
Sbjct: 97 L 97
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A
{Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Length = 102
Score = 49.9 bits (120), Expect = 3e-08
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI------QPSDSHNSQV 56
++ D+ TG+SKG+GFV+F N V K+ G +L + Q +++ Q
Sbjct: 39 VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLSTYHVQP 96
Query: 57 KKKI 60
+ I
Sbjct: 97 RPLI 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 52.7 bits (126), Expect = 4e-08
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+++ +G LH+A ++ L+ K A V + G+ LD A+ H + E
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 289 YLVNS 293
L +
Sbjct: 277 LLEQA 281
Score = 41.1 bits (96), Expect = 2e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 234 DENGLNCLHWAC---DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
LH A ++ L +V +I+ G ++ +DG+ L YA D ++ L
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 291 VNSGA 295
+ A
Sbjct: 246 LKGRA 250
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural
genomics, joint center for struc genomics, JCSG,
protein structure initiative; HET: PGE; 1.95A {Homo
sapiens} PDB: 3b4d_A 3b4m_A
Length = 89
Score = 49.0 bits (118), Expect = 5e-08
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
+++ DK +G KGF ++ F +KE+V + D + G ++ + P
Sbjct: 35 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A
{Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Length = 216
Score = 51.5 bits (124), Expect = 5e-08
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKKKI 60
+ + +D T KGF FV ++ EA +S +L G + + +
Sbjct: 57 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIID 116
Query: 61 ETKETAS 67
+ E A
Sbjct: 117 QLAEEAR 123
Score = 51.2 bits (123), Expect = 7e-08
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
+A++ D TG KG+GF+ ++ ++ S+
Sbjct: 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: d.58.7.1
Length = 111
Score = 49.3 bits (118), Expect = 5e-08
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-------TDSHVLEGSRLSIQPSDSHNS 54
V+ +T SKG F F +EA K + L+G +L + + + +
Sbjct: 44 YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103
Query: 55 QVKKK 59
Sbjct: 104 AASGP 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A)
binding, structural genomics, protein structure
initiative, PSI-2; NMR {Xenopus laevis}
Length = 124
Score = 49.3 bits (118), Expect = 6e-08
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
+++ DK +G KG+ ++ F + +VD + D V G + + P
Sbjct: 65 RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD,
RNP, poly(U) binding, nucleus, RNA-binding, binding
protein; 1.60A {Saccharomyces cerevisiae}
Length = 83
Score = 48.3 bits (116), Expect = 7e-08
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ VM+D TG S+G+GFV+F +++
Sbjct: 30 SGHVMWDMQTGSSRGYGFVSFTSQDDAQN 58
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 51.5 bits (123), Expect = 8e-08
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+++ G LH+ C + + ++ L+ + A + + + G+ LD AK ++H E
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEE 255
Query: 289 YLVNS 293
L +
Sbjct: 256 LLTQA 260
Score = 42.3 bits (99), Expect = 8e-05
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC---DRGHL 250
+ ++L + + G L + + + E LH A DR L
Sbjct: 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 185
Query: 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+V L++ +++ G L Y ++ + ++ L+ A
Sbjct: 186 HIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA
binding domain, RBD, RNA splicing, apoptosis,
phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Length = 87
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+A V+ D TG SKG+GFV+F NK +
Sbjct: 35 DARVVKDMATGKSKGYGFVSFFNKWDAEN 63
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex,
AU-rich element, transcription/RNA complex; 1.80A {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H
1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 49.5 bits (119), Expect = 1e-07
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 42
+ ++ D+ TG+S+G GF+ F + ++ + G+
Sbjct: 117 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158
Score = 45.6 bits (109), Expect = 3e-06
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVK 57
+ ++ DK TG S G+GFV + + + +K +T + L+ + + + ++ ++
Sbjct: 31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR 87
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 50.5 bits (121), Expect = 1e-07
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS---------- 269
+ + + + G LH A +R V+ L+EK GADV+
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEG 134
Query: 270 ----DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
G+ L A ++ YL +G ++
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168
Score = 42.8 bits (101), Expect = 5e-05
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH--- 283
+ G L A +V +L E AD+ DS G+ L AI
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191
Query: 284 ------TDLIEYLVNSGA 295
T + + L+ A
Sbjct: 192 ENTKFVTKMYDLLLIKCA 209
Score = 42.5 bits (100), Expect = 7e-05
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273
L+ +GL+ L A G + + QH+I + +
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAAAHHHHHH 260
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 202 NEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLD----ENGLNCLHWA---CDRGHLK 251
N +++ G L+ L+ L K + + G CL A G
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRND 63
Query: 252 VVQHLIE------KCGADVNVTDSDGDYG----LDYAKAIEHTDLIEYLVNSGA 295
+ L++ +N D Y L A +E LV GA
Sbjct: 64 TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
>1x4e_A RNA binding motif, single-stranded interacting protein 2;
structural genomics, RRM domain, NPPSFA; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 85
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRL 44
+ DK T KG+GFV F + A K + + ++
Sbjct: 35 TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain,
RNA-protein complex, nucleolus, structural protein/RNA
complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1
d.58.7.1 PDB: 1rkj_A 2krr_A
Length = 175
Score = 49.1 bits (118), Expect = 2e-07
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
+ +V+ D TG ++ FG+V F++ E ++K + G+ + ++ +S+ +
Sbjct: 42 DLAVV-DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAAR 100
Query: 62 T 62
T
Sbjct: 101 T 101
Score = 44.1 bits (105), Expect = 1e-05
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 46
+ G SKG ++ F+++ +K ++G +S+
Sbjct: 125 EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding
protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Length = 135
Score = 48.2 bits (115), Expect = 2e-07
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQ------PSDSHNS 54
+ + D+ T S+GF FV F +K + + + D VL+G L +Q P DSH+S
Sbjct: 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 102
Score = 47.2 bits (113), Expect = 2e-07
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI---QPSDSHNS 54
V+ D+ T S+GFGFVTF+N + + ++G ++ + S + S
Sbjct: 42 VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 50.6 bits (120), Expect = 2e-07
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
N+NQ D G LH A GH + + K GAD+ DS+G L A + D++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 289 YLV 291
L
Sbjct: 319 LLR 321
Score = 47.1 bits (111), Expect = 4e-06
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
D N ++ L A L + L++ GA+VN DS G L +A + HT L
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGL 283
Query: 287 IEYLVNSGA 295
+ GA
Sbjct: 284 ACLFLKRGA 292
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dgq_A
Length = 106
Score = 46.9 bits (112), Expect = 3e-07
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ 47
+V+ D+ TG+ KG F+T+ +E+ K S + L G IQ
Sbjct: 43 LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing,
transcription, RNA binding protein, mRNA processing; NMR
{Homo sapiens} PDB: 2yh1_A
Length = 198
Score = 48.9 bits (117), Expect = 3e-07
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
+++ D TGLSKG+ F + + D+ + + L +L +Q
Sbjct: 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189
Score = 46.9 bits (112), Expect = 1e-06
Identities = 8/78 (10%), Positives = 21/78 (26%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET 62
+ + K F F+ F++ + + + D + +G L I+ +
Sbjct: 39 GNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENP 98
Query: 63 KETASFSRMAENMEDRFN 80
+
Sbjct: 99 SVYVPGVVSTVVPDSAHK 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA
recognition motif, bruno; NMR {Drosophila melanogaster}
Length = 118
Score = 47.0 bits (112), Expect = 4e-07
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+A V DK T LSK FGFV+F N ++
Sbjct: 69 SAKVFIDKQTSLSKCFGFVSFDNPDSAQV 97
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP,
RBD, poly(U) binding, tandem, acetylation, cytopla
nucleus; 2.70A {Saccharomyces cerevisiae}
Length = 166
Score = 47.9 bits (115), Expect = 5e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ VM+D TG S+G+GFV+F +++
Sbjct: 116 SGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144
Score = 37.5 bits (88), Expect = 0.002
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
N +M DK + + FV + + T
Sbjct: 29 NIKIMIDK-NNKNVNYAFVEYHQSHDANIALQT 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 99
Score = 46.4 bits (111), Expect = 5e-07
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
D T KGF FVTF E K ++ D V +G L + PS
Sbjct: 37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM
domain, RNA- binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 104
Score = 46.5 bits (110), Expect = 5e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 14 SKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
G +TF+ ++V + H L G++LS++P+
Sbjct: 46 LGCGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain,
structural genomics, NPPSFA; NMR {Mus musculus} PDB:
2rne_A 2dh7_A
Length = 115
Score = 46.6 bits (111), Expect = 6e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+A V+ D TG SKG+GFV+F NK +
Sbjct: 44 DARVVKDMATGKSKGYGFVSFFNKWDAEN 72
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Length = 115
Score = 46.2 bits (110), Expect = 7e-07
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+A V DK T LSK FGFV++ N +
Sbjct: 54 SAKVFIDKQTNLSKCFGFVSYDNPVSAQA 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 96
Score = 45.7 bits (109), Expect = 8e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+M D +TG SKG+ F+ F + +A D
Sbjct: 36 PKIMRDPDTGNSKGYAFINFASFDASDA 63
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin
modification, transcription regulation, structural
genomics, structural genomics consortium; 1.30A {Homo
sapiens}
Length = 110
Score = 45.9 bits (109), Expect = 9e-07
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
++ T G V F + + + G+ + Q
Sbjct: 35 EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 45.7 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ DK TG SKGF F++F +E +
Sbjct: 44 RIYLAKDKTTGQSKGFAFISFHRREDAAR 72
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 46.8 bits (112), Expect = 1e-06
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 42
+++ DK TG +G FV + +E + S ++ + EG
Sbjct: 118 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159
Score = 45.6 bits (109), Expect = 3e-06
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVK 57
+M D TG S G+ FV F ++ + + + RL + + +K
Sbjct: 32 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK 88
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger,
CYP33, MLL, RNA binding protein, ALT splicing, mRNA
processing, mRNA splicing; 1.85A {Homo sapiens} PDB:
2kyx_A 3lpy_A*
Length = 85
Score = 44.4 bits (106), Expect = 2e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ + D T +GF FV F+ E
Sbjct: 36 DIQIPLDYETEKHRGFAFVEFELAEDAAA 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein
1; RRM domain, RBD, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 94
Score = 44.5 bits (106), Expect = 2e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++M DK+T SKG F+ F +K++
Sbjct: 45 KVTIMKDKDTRKSKGVAFILFLDKDSAQN 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein
complex, coexpression, heterotetramer, mRNA maturation,
mRNA cleavage; 1.92A {Homo sapiens}
Length = 156
Score = 46.1 bits (109), Expect = 2e-06
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQ 55
++ G SKG+ V ++ +V K+ VL G ++ ++P+ N
Sbjct: 86 ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLS 140
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 103
Score = 44.6 bits (106), Expect = 2e-06
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
+ ++ DK+T KGF +V F +++ + + D +L L +
Sbjct: 43 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 102
Score = 44.5 bits (106), Expect = 2e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ + D T +GF FV F+ E
Sbjct: 41 DIQIPLDYETEKHRGFAFVEFELAEDAAA 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding
protein, GU-rich RNA, structure; NMR {Trypanosoma
cruzi} SCOP: d.58.7.1
Length = 139
Score = 45.5 bits (108), Expect = 2e-06
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ D+ T S+G+GFV FQ+ + +
Sbjct: 72 VKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
A ++ D+ TG SKGFGFV F ++E
Sbjct: 41 RARIVTDRETGSSKGFGFVDFNSEEDAKA 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 95
Score = 44.5 bits (106), Expect = 2e-06
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ S+++D+ + S+GF FV F+N + +
Sbjct: 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKE 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 44.2 bits (105), Expect = 2e-06
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
M+ ++ ++ TG+ G+ FV F + +K
Sbjct: 38 MSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA
binding domain, RBD, RNP, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 95
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N +M D +TG SKG+GF+TF + E +
Sbjct: 34 NIVLMKDSDTGRSKGYGFITFSDSECARR 62
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 46.6 bits (110), Expect = 2e-06
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHN 53
++ G SKGF V ++ + K+ L G + P +
Sbjct: 99 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF 151
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 98
Score = 44.2 bits (105), Expect = 3e-06
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 3 ASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
++ KN LS GFGFV ++ E K H ++G +L ++ S
Sbjct: 35 CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing
factor, RNA protein complex, SMN, binding protein-RNA
complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Length = 129
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
+ S+++D+ + S+GF FV F+N + + + L+G R+ +
Sbjct: 75 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation,
RRM domain, transcr; NMR {Homo sapiens}
Length = 140
Score = 45.2 bits (107), Expect = 3e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ + D T +GF FV F+ E
Sbjct: 92 DIQIPLDYETEKHRGFAFVEFELAEDAAA 120
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT
arginine/serine-rich 2, S35, splicing factor SC35,; RRM
domain, cell WALL; NMR {Streptococcus SP}
Length = 158
Score = 45.2 bits (107), Expect = 4e-06
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQ------PSDSHNS 54
+ + D+ T S+GF FV F +K + + + D VL+G L +Q P DSH+S
Sbjct: 99 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition
motif, C-terminal helix, N-terminal helix, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 43.8 bits (104), Expect = 4e-06
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ +++D+ TG KG+GF +Q++E
Sbjct: 36 VSFRLVYDRETGKPKGYGFCEYQDQETALS 65
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding
proteins, RNA binding protein/SS-DNA binding protein
complex; NMR {Helicobacter pylori}
Length = 90
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
N +++D+ T KGFGFV Q + + + D+ G + +
Sbjct: 30 NVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRV 74
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Length = 95
Score = 43.5 bits (103), Expect = 5e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 32
N ++ DK T ++GF FV + ++
Sbjct: 40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA
binding protein, structure, protein-RNA complex, RNA
stem-loop, structural protein/RNA complex; NMR {Homo
sapiens}
Length = 116
Score = 43.5 bits (103), Expect = 6e-06
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 41
++ D+ T S+GF F+TF+N + L G
Sbjct: 37 VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM
domain, riken structural genomics/proteomics initiative
RSGI, RNA binding protein; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 88
Score = 43.0 bits (102), Expect = 6e-06
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI---QPSDSHNS 54
M+ + + F FVTF + + + D +++G + I +P + NS
Sbjct: 33 MDVFIPKP-----FRAFAFVTFADDQIAQSLCGED-LIIKGISVHISNAEPKHNSNS 83
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain,
poly(A) site recognition, RNA, nuclear, RNA BIND
protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Length = 90
Score = 43.0 bits (102), Expect = 6e-06
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ G SKGF V ++ + K
Sbjct: 32 EIKFFENRANGQSKGFALVGVGSEASSKK 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex,
mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB:
2x1b_A 2x1a_A 2km8_B
Length = 96
Score = 42.6 bits (101), Expect = 8e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N +MFD TG SKG+ F+ F++ E+
Sbjct: 31 NLKMMFDPQTGRSKGYAFIEFRDLESSAS 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper),
RRM2 domain, solution structure, structural genomics,
PSI-2; NMR {Homo sapiens}
Length = 108
Score = 43.1 bits (102), Expect = 8e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ +M D TG SKG+GF+TF + E K
Sbjct: 55 SIQLMMDSETGRSKGYGFITFSDSECAKK 83
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA
recognition motif, vincu alpha-actinin, nucleus, RNA
binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E
Length = 284
Score = 45.4 bits (108), Expect = 9e-06
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 51
+++ + TG SKG+GF + K++ + S L L + +D+
Sbjct: 124 RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSI---QPSDSHNSQVK 57
+ + G KGF + ++ E ++ D L GS L + P S +
Sbjct: 214 FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLA 272
Query: 58 KKIE 61
I
Sbjct: 273 ALIA 276
Score = 35.0 bits (81), Expect = 0.021
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 11 TGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHN 53
KG FVT N E + + L LS+Q +
Sbjct: 53 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDA 96
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49)
(SAP 49) (SF3B50)...; structure genomics,RRM
domain,splicing factor 3B; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 105
Score = 42.6 bits (101), Expect = 9e-06
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKK 58
+N + D+ TG +G+GFV F ++E D D L G + + + +HN +
Sbjct: 43 VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNLSG 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 101
Score = 42.6 bits (101), Expect = 1e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
N + D TG ++ FG+V F++ E ++K + G+ + ++
Sbjct: 45 NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 103
Score = 42.6 bits (101), Expect = 1e-05
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQ 47
+ + + +T +GF FV F ++ +A D + D L+G L +Q
Sbjct: 42 DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 96
Score = 42.3 bits (100), Expect = 1e-05
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ G SKG ++ F+++ +K
Sbjct: 42 EIRLVSQDGKSKGIAYIEFKSEADAEK 68
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 44.7 bits (106), Expect = 1e-05
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
A V+ D + G + G GFV F K K
Sbjct: 125 KAVVVVD-DRGRATGKGFVEFAAKPPARKA 153
Score = 33.9 bits (78), Expect = 0.046
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 14 SKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 46
+GFGF+ +++ + + D +L+ L I
Sbjct: 57 DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA
recognition motif, RRM, RNA binding domain, RBD, RNP,
structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 41.9 bits (99), Expect = 2e-05
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
N KGFG+ F++ +++ S + L R+ +
Sbjct: 47 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA
binding domain, RNA recognition motif, SP factor, snRNP,
spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP:
d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Length = 292
Score = 43.8 bits (104), Expect = 2e-05
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
K + F+ F+NK++ ++ + +L +S+ +D
Sbjct: 244 PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK 290
Score = 41.9 bits (99), Expect = 1e-04
Identities = 3/49 (6%), Positives = 13/49 (26%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK 57
+ + F + F + + V+ + + + +
Sbjct: 75 DSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMT 123
Score = 39.2 bits (92), Expect = 8e-04
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETK 63
+ S+ F ++ +KE V + +EG L + S+ + T
Sbjct: 149 RLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATL 208
Query: 64 E 64
E
Sbjct: 209 E 209
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43
inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA;
1.65A {Mus musculus}
Length = 89
Score = 41.1 bits (97), Expect = 3e-05
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
++ + + F FVTF + + + D +++G + I
Sbjct: 39 VDVFIPKP-----FRAFAFVTFADDKVAQSLCGED-LIIKGISVHI 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 42.6 bits (99), Expect = 3e-05
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 8/27 (29%)
Query: 90 VKKLDSSTLLKFY------ALYKQATV 110
+KKL +S LK Y AL +AT+
Sbjct: 22 LKKLQAS--LKLYADDSAPALAIKATM 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA
recognition motif, RRM, RNA binding domain, RBD,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 41.5 bits (98), Expect = 3e-05
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
A ++ DK+ G S+G G VTF+ +
Sbjct: 45 ADILEDKD-GKSRGIGTVTFEQSIEAVQ 71
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA
binding protein-RNA complex; 1.85A {Homo sapiens} PDB:
3nna_A 3nnc_A 2dhs_A 3nnh_A
Length = 175
Score = 42.6 bits (101), Expect = 3e-05
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 2 NASVMFDKNTGL--SKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ--PSDSHNSQ 55
+V+ D++ SKG FVTF ++A + + + VL G IQ P+DS +
Sbjct: 32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 91
Query: 56 VKK 58
+
Sbjct: 92 AVE 94
Score = 42.2 bits (100), Expect = 5e-05
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGS 42
++ GLS+G FVTF + + +EG
Sbjct: 124 ECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC 165
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 41.3 bits (97), Expect = 3e-05
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
M KG FV F + E+ K T + + L I D + ++ ++ +
Sbjct: 39 LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERK 98
Query: 62 TKE 64
+
Sbjct: 99 QNK 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, RNA recognition; NMR {Homo
sapiens}
Length = 99
Score = 41.1 bits (97), Expect = 4e-05
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 48
+ D+ TG KG V+F + + D G+ + +
Sbjct: 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 97
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 103
Score = 41.0 bits (97), Expect = 4e-05
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
A VM + G SKGFGFV F + E K
Sbjct: 45 AKVMME--GGRSKGFGFVCFSSPEEATK 70
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM
domaim, RDB, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 40.7 bits (96), Expect = 4e-05
Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDS 51
+ ++ ++ G KG +V ++N+ + V D ++ + + + S+S
Sbjct: 46 DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B;
protein biosynthesis, RNA recognition motif, RNA
binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Length = 100
Score = 40.7 bits (96), Expect = 4e-05
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
N KGFG+ F++ +++ S + L R+ + +D
Sbjct: 51 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.54A {Homo sapiens}
Length = 95
Score = 40.7 bits (96), Expect = 5e-05
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ D+ G K FGFV F++ E+V
Sbjct: 45 KVTICKDR-EGKPKSFGFVCFKHPESVSY 72
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 43.3 bits (102), Expect = 5e-05
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 229 NINQLDENGLNCLHWAC---DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
LH A ++ L +V +I+ G ++ +DG+ L YA D
Sbjct: 163 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPD 221
Query: 286 LIEYLVNSGA 295
++ L+ A
Sbjct: 222 CLKLLLKGRA 231
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing,
mRNA splicing, mRNA transport, nonsense-mediated mRNA
decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB:
2j0q_D*
Length = 126
Score = 40.8 bits (96), Expect = 7e-05
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N + D+ TG KG+ V ++ +
Sbjct: 50 KNIHLNLDRRTGYLKGYTLVEYETYKEAQA 79
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 115
Score = 40.3 bits (95), Expect = 7e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEA 27
+ F TG +G F+TF NKE
Sbjct: 54 GPPIQFRMMTGRMRGQAFITFPNKEI 79
>1x5o_A RNA binding motif, single-stranded interacting protein 1;
structure genomics, RRM domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 40.3 bits (95), Expect = 9e-05
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ D +G S+G GF ++ E +
Sbjct: 55 TRILRDS-SGTSRGVGFARMESTEKCEA 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 40.0 bits (94), Expect = 9e-05
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ ++F++ SKGFGFVTF+N D+
Sbjct: 44 DVEIIFNERG--SKGFGFVTFENSADADR 70
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ ++F++ SKGFGFVTF+N D+
Sbjct: 58 DVEIIFNERG--SKGFGFVTFENSADADR 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural
genomi center for structural genomics, JCSG, protein
structure INI PSI-biology; 2.54A {Homo sapiens} PDB:
1no8_A
Length = 107
Score = 40.0 bits (94), Expect = 1e-04
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
A+V +D+ +G S G V F+ K K
Sbjct: 59 AAVHYDR-SGRSLGTADVHFERKADALK 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription,
splicing, RNA processing, nonsense mediated D NMD,
HDAC, histone deacetylation; 1.90A {Homo sapiens}
Length = 88
Score = 39.4 bits (93), Expect = 1e-04
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 2 NASVMFDKN-TGLSKGFGFVTFQNKEAVDK 30
+ ++ LSKG+ +V F+N + +K
Sbjct: 33 MIDMPVERMHPHLSKGYAYVEFENPDEAEK 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
V+ D+ TG+SKG+GFV F ++ +
Sbjct: 40 GKVVLDQ-TGVSKGYGFVKFTDELEQKR 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A
{Homo sapiens} SCOP: d.58.7.1
Length = 106
Score = 39.9 bits (94), Expect = 1e-04
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEA 27
N + D+ TG KG+ V ++ +
Sbjct: 51 KNIHLNLDRRTGYLKGYTLVEYETYKE 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 113
Score = 39.3 bits (92), Expect = 2e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ DK TG KG V++++
Sbjct: 52 MIHIYLDKETGKPKGDATVSYEDPPTAKA 80
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 39.3 bits (92), Expect = 2e-04
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ D+ TG KG V+F + +
Sbjct: 47 LYTDRETGKLKGEATVSFDDPPSAKA 72
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 101
Score = 38.8 bits (91), Expect = 2e-04
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ G SKG+ F+ F + E +
Sbjct: 43 KVPQNQNGKSKGYAFIEFASFEDAKE 68
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation
factors PAIP1 and PAIP2, translation-RNA complex; 2.00A
{Homo sapiens} PDB: 1cvj_A*
Length = 213
Score = 40.7 bits (96), Expect = 2e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
+ V D T S G+ +V FQ ++ T
Sbjct: 44 SIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
++ V+ D SKG+GFV F+ +EA ++
Sbjct: 131 LSCKVVCD--ENGSKGYGFVHFETQEAAER 158
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation
initiation, RNA-binding, EIF4G-binding translation;
1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Length = 115
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
V+ D+N SKG+GFV F+ +EA ++
Sbjct: 35 CKVVCDENG--SKGYGFVHFETQEAAER 60
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA
processing, mRNA splicing, transport, nucleus,
RNA-binding, spliceosome, transport; NMR {Mus musculus}
Length = 124
Score = 39.3 bits (92), Expect = 2e-04
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
A+V +D+ +G S G V F+ + K
Sbjct: 65 AAVDYDR-SGRSLGTADVHFERRADALK 91
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 107
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFS--TDSHVLEGSRLSIQPSDS 51
+ TG +GFGFV F K+ K F+ S L G RL ++ +DS
Sbjct: 44 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing,
protein complex, EXON junct complex, signaling protein;
1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB:
2hyi_B* 2j0s_D* 2xb2_D*
Length = 110
Score = 38.8 bits (91), Expect = 3e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N + D+ TG SKG+ V ++ +
Sbjct: 55 NIHLNLDRRTGFSKGYALVEYETHKQALA 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2dh9_A
Length = 92
Score = 37.9 bits (89), Expect = 4e-04
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ A + + G SKG G V F++ E ++
Sbjct: 36 LYADIKME--NGKSKGCGVVKFESPEVAER 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar
mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 39.0 bits (91), Expect = 5e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N + D+ TG SKG+ V ++ +
Sbjct: 101 NIHLNLDRRTGFSKGYALVEYETHKQALA 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 7e-04
Identities = 36/250 (14%), Positives = 70/250 (28%), Gaps = 65/250 (26%)
Query: 25 KEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD 84
KE +D + + V RL V+K +E ++ + ++ Q
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--- 104
Query: 85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAW-----NSLGQMA 139
PS++ ++ Y + + + + +KYN L Q
Sbjct: 105 --PSMMTRM--------YIEQRD----------RLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQL 199
+K + + + G SG K WV +
Sbjct: 145 LELRPAKNVLI--DGVLG----------------SG--------KTWV-ALDVCLSYKVQ 177
Query: 200 DDNEKNIYEWAKEGKL---DMLVKQLTKLK---DFNINQLDENGLNC---LHWACDRGHL 250
+ I+ W + +++ L KL D N ++ N +H
Sbjct: 178 CKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 251 KVVQHLIEKC 260
+ E C
Sbjct: 237 LLKSKPYENC 246
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 37.9 bits (88), Expect = 8e-04
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+ G + G GFV F+N+ + + + P + +KI+
Sbjct: 57 YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT--KKGMLEKIDMIR 114
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain.,
transport protein; NMR {Mus musculus}
Length = 177
Score = 38.7 bits (90), Expect = 8e-04
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
A+V +D+ +G S G V F+ + K L+G + IQ
Sbjct: 117 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics,
RRM domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 37.0 bits (86), Expect = 0.001
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
+ G S G FV F ++E +K + + I S
Sbjct: 47 TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 37.0 bits (86), Expect = 0.001
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
+ N G G V F+N++ K L G +
Sbjct: 47 HVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA
recognition, alternative conformation binding protein;
HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Length = 87
Score = 36.6 bits (85), Expect = 0.001
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
+ K F F+ F++ + + + D + +G L I
Sbjct: 43 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 84
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 37.2 bits (86), Expect = 0.001
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKET 65
G G FV F +E +L + + S ++V++ + +
Sbjct: 59 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR--STAAEVQQVLNRFSS 116
Query: 66 AS 67
AS
Sbjct: 117 AS 118
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B
3fey_B 1h6k_X
Length = 156
Score = 37.5 bits (87), Expect = 0.001
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ DK + GF FV + ++ +
Sbjct: 68 KIIMGLDKMKKTACGFCFVEYYSRADAEN 96
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kg0_A
Length = 126
Score = 36.4 bits (84), Expect = 0.003
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
+ G G FV F ++E +K + + + S
Sbjct: 74 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 109
Score = 35.9 bits (83), Expect = 0.003
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 3 ASVMFDKN-TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
+V K+ G + G G V F + + + + ++ + + P+
Sbjct: 43 DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 92
Score = 35.3 bits (82), Expect = 0.003
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 15 KGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
K + FV + E AV+ + D+ +G R+ +Q S
Sbjct: 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding
protein; NMR {Homo sapiens}
Length = 101
Score = 35.3 bits (82), Expect = 0.003
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 14 SKGFGFVTFQN-KEAVDKVFSTDSHVLEGSRLSIQPS 49
GF FV F++ ++A D V D V+ GSR+ ++ S
Sbjct: 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 118
Score = 35.7 bits (82), Expect = 0.004
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASF 68
G G FV ++++ V D + + + SH +++ ++ S
Sbjct: 55 TREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK--SHRTEMDWVLKHSGPNSA 112
Query: 69 SRMA 72
S +
Sbjct: 113 SGPS 116
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dnk_A 2dno_A
Length = 105
Score = 35.3 bits (82), Expect = 0.004
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ 47
+V+ + G SKG FV F + S + G+ S+
Sbjct: 45 CTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor)...; structure genomics, SURP
domain, splicing factor SF2; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 9 KNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
KN F FV F++ A D V+ D + +G RL ++
Sbjct: 55 KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif,
RRM, transcription termination, NUC phosphoprotein; NMR
{Saccharomyces cerevisiae}
Length = 96
Score = 34.9 bits (81), Expect = 0.004
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 13 LSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
+ FGF+ F N + D + + G +L ++ S
Sbjct: 43 IKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 93
Score = 34.5 bits (80), Expect = 0.006
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDK 30
L G+ FV + ++ +
Sbjct: 37 AGQVLLKSGYAFVDYPDQNWAIR 59
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 91
Score = 34.6 bits (80), Expect = 0.006
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 4 SVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
++ +N G G+ FV F N+E V + + + G + + S
Sbjct: 38 AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 34.6 bits (80), Expect = 0.007
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 13 LSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPS 49
+ FGF+ F N ++V + + G +L ++ S
Sbjct: 55 IKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 114
Score = 34.6 bits (79), Expect = 0.008
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV 56
K+ KG+ F+ FQ + +V + L + + V
Sbjct: 38 DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPV 93
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Length = 110
Score = 34.3 bits (79), Expect = 0.009
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 13 LSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPS 49
+ KG+ FV + N+ V + VL G L I +
Sbjct: 60 VHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic
initiation factor 3 complex, RNA recognition motif; NMR
{Homo sapiens}
Length = 105
Score = 34.3 bits (79), Expect = 0.010
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSR 43
+ + + G +KG+ F+ + + V + D + L+
Sbjct: 50 NDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 90
Score = 33.7 bits (78), Expect = 0.010
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 15 KGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
K + FV + + A + + ++G R++++ S
Sbjct: 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo
sapiens} PDB: 2ek6_A
Length = 95
Score = 33.8 bits (78), Expect = 0.011
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 4 SVMFDKN-TGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 51
SV N G+ G V F++++ + + ++ + S
Sbjct: 45 SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 34.2 bits (79), Expect = 0.011
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 13 LSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
+ GF FV F+ E A + L + S
Sbjct: 63 ILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H';
structural genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 102
Score = 33.9 bits (78), Expect = 0.012
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 4 SVMFDKN-TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
V + G G V F E + D ++ + + + + +
Sbjct: 43 RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTS 95
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A
{Saccharomyces cerevisiae} PDB: 3ns5_A
Length = 100
Score = 33.9 bits (78), Expect = 0.012
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
N D+ TG +KGF FV + K
Sbjct: 41 NMEFPIDEATGKTKGFLFVECGSMNDAKK 69
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wi6_A
Length = 88
Score = 33.5 bits (77), Expect = 0.014
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ--PSDSHNS 54
+K FVT N E + G L +Q P+D+
Sbjct: 33 YCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLC 82
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative,
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kfy_A
Length = 136
Score = 34.2 bits (78), Expect = 0.014
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
G G FV +++ V D + + + SH +++ ++
Sbjct: 82 TREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK--SHRTEMDWVLK 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 90
Score = 33.3 bits (77), Expect = 0.015
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 13 LSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
+ K +GFV ++K A D + + + L G ++++ S
Sbjct: 40 IIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 34.8 bits (79), Expect = 0.018
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
KG FV F + E+ K T + + L I D + KK E
Sbjct: 145 LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY---FAKKNE 193
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 32.7 bits (75), Expect = 0.029
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 4 SVMFDKN-TGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
SV N G+ G V F++++ + + ++ +
Sbjct: 45 SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 33.1 bits (76), Expect = 0.029
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 9 KNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
NT ++G +V +++ A + V + L + +++ + K + KE
Sbjct: 41 GNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAFQKMDTKKKE 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3,
eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo
sapiens}
Length = 81
Score = 32.4 bits (74), Expect = 0.031
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 4 SVMFDKNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSR 43
+ + + G +KG+ F+ + + AVD V + D + L+
Sbjct: 36 NDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus,
phosphorylation, ribonucleoprotein, ribosome
biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae}
PDB: 2osr_A
Length = 111
Score = 32.9 bits (75), Expect = 0.037
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 8 DKNTGLSKGFGFVTFQNKE----AVDKVFSTDSHVLEGSRLSI 46
NT G G + F ++E A++++ ++ GS +++
Sbjct: 60 SVNTRDFDGTGALEFPSEEILVEALERL---NNIEFRGSVITV 99
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 34.1 bits (77), Expect = 0.039
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKKKIETKETAS 67
+ +G FV F+ + + + IQ + + + + K T
Sbjct: 46 SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERD 105
Query: 68 FSRMAENMEDRFNQACDYLPS 88
R + + A
Sbjct: 106 RKREKRKPKSQETPATKKAVQ 126
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and
splicing factor,...; protein-RNA complex RRM alpha-beta
sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR
{Streptococcus SP} PDB: 2i38_A
Length = 150
Score = 33.3 bits (76), Expect = 0.043
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 14 SKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQPS 49
GF FV F++ A D V D L G R+ ++ S
Sbjct: 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain,
PARP14, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 97
Score = 32.3 bits (74), Expect = 0.046
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRL 44
D + + FVT++ E+ D+ V + +E +L
Sbjct: 42 DLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding
factor, RNA binding domain, STRU genomics, joint center
for structural genomics, JCSG; NMR {Homo sapiens}
Length = 107
Score = 32.1 bits (73), Expect = 0.049
Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ-VKKKIETKE 64
G +G + ++++ V K + + + ++ + + K ++ K
Sbjct: 46 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS 105
Query: 65 T 65
+
Sbjct: 106 S 106
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif,
G-tract, G-quadruplex, alternative splicing, RNA binding
protein; NMR {Homo sapiens} PDB: 2kg1_A
Length = 139
Score = 32.9 bits (75), Expect = 0.053
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 4 SVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET 62
V + G G V F E S D ++ + + +
Sbjct: 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN--------STTGA 125
Query: 63 KETASFSRMAENM 75
A S++ + M
Sbjct: 126 SNGAYSSQVMQGM 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 99
Score = 31.9 bits (73), Expect = 0.054
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 14 SKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSI 46
+ + FV F N+E AV+ + + + VL+GS + +
Sbjct: 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA
recognition motif, RRM, RNP, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Length = 99
Score = 31.5 bits (72), Expect = 0.073
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 14 SKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRL 44
KGFGF+ + + + D+ L G +L
Sbjct: 50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 33.3 bits (75), Expect = 0.083
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVD-KVFSTDSHVLEGSRLSIQ 47
K +G +G+ F+ ++++ + D ++G R+ +
Sbjct: 137 SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed
protein, RRM, U1A, RNA binding protein; NMR {Homo
sapiens}
Length = 127
Score = 31.4 bits (71), Expect = 0.14
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDKVF-STDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+ + G ++ F +E+ + + +G+ L I S++ SQV + +
Sbjct: 66 DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAEDGSLEH 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2dk2_A
Length = 103
Score = 30.7 bits (70), Expect = 0.15
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 13 LSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSI---QPSDSHNSQVKKKIETK 63
K + F+ F ++ AV + + LEG + I +P D + K + +
Sbjct: 43 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAA 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 30.9 bits (70), Expect = 0.16
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 8 DKNTGLSKGFGFVTFQNKEAVD---KVFSTDSHVLEGSRLSI---QPSDSHNSQVKKKIE 61
+ ++GF FV +++ A + L G ++++ +P + V + +
Sbjct: 45 AADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVS 104
Query: 62 T 62
Sbjct: 105 G 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 97
Score = 30.6 bits (69), Expect = 0.18
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 14 SKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
+ F+ + + A + S L L + +
Sbjct: 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain,
RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 30.7 bits (70), Expect = 0.19
Identities = 3/29 (10%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
+ ++ + + + FV F
Sbjct: 44 SCKMITEHTSN--DPYCFVEFYEHRDAAA 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif,
RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 111
Score = 30.2 bits (68), Expect = 0.23
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 8 DKNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRL 44
+ +VT+ E A+ + ++ V++G L
Sbjct: 56 YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like,
structural genomics, joint center for struc genomics,
JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Length = 205
Score = 31.2 bits (70), Expect = 0.27
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 2 NASVMFDKNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSI 46
SV G + + +K A++ + + + ++
Sbjct: 152 PTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear
ribonucleoprotein, R binding domain, RNA binding
protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1
PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A*
3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P*
3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A*
...
Length = 97
Score = 29.1 bits (66), Expect = 0.43
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 9 KNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQ 47
+ +G FV F+ + + S + IQ
Sbjct: 45 SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 29.3 bits (66), Expect = 0.62
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 14 SKGFGFVTFQNKEAVDK 30
+ FVT++ E+ D+
Sbjct: 72 PRNCAFVTYEKMESADQ 88
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 30.0 bits (67), Expect = 0.73
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 14 SKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMA 72
K V + + + H L G + I S H + + ++
Sbjct: 71 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK-HQNVQLPREGQEDQGLTKDYG 129
Query: 73 ENMEDRFNQ 81
+ RF +
Sbjct: 130 NSPLHRFKK 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif,
U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein;
2.50A {Homo sapiens}
Length = 143
Score = 29.4 bits (66), Expect = 0.84
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 3 ASVMFD---KNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKK 58
+MFD G KG F+ N++A K + + +VL G + +Q + S +
Sbjct: 77 QRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS-ARPKQD 135
Query: 59 KIETKE 64
E K
Sbjct: 136 PKEGKR 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA
recognition, stress granules, nucleus, RNA-binding,
transcription; NMR {Saccharomyces cerevisiae}
Length = 101
Score = 28.4 bits (64), Expect = 0.88
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 14 SKGFGFVTFQNKEA 27
KG F+ + E
Sbjct: 62 EKGCCFIKYDTHEQ 75
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA,
spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1
d.58.7.1
Length = 198
Score = 29.5 bits (66), Expect = 0.91
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 3 ASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
++F+K K V + + + H L G + I S N Q+ ++ +
Sbjct: 34 VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQ 88
Query: 62 TKETASFSRMAENMEDRFNQ 81
++ + RF +
Sbjct: 89 -EDQGLTKDYGNSPLHRFKK 107
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 108
Score = 28.6 bits (64), Expect = 1.0
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 14 SKGFGFVTFQNKE----AVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFS 69
G G V F KE AV K L+ ++ ++ +VK + S
Sbjct: 49 RDGTGVVEFVRKEDMTYAVRK--------LDNTKFRSHEGETAYIRVKVDGPRSPSYGRS 100
Query: 70 R 70
R
Sbjct: 101 R 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related
protein, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 28.1 bits (63), Expect = 1.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 15 KGFGFVTFQNKEA 27
KG+ FV F E+
Sbjct: 61 KGYSFVRFSTHES 73
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain
containing protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.19.1
Length = 86
Score = 27.2 bits (60), Expect = 1.8
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 167 NWDESQESGSKENEGQ-----TKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQ 221
+W + GS + EG GW++V D N Y EGK D+ +
Sbjct: 27 DWKWRDQDGSPQGEGTVTGELHNGWIDV--------TWDAGGSNSYRMGAEGKFDLKLAP 78
Query: 222 LTK 224
Sbjct: 79 GYS 81
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 27.2 bits (61), Expect = 1.9
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 15 KGFGFVTFQNKEAVDK--VFSTDSHVLEGSRLSIQ 47
+ F+ F ++A + S + ++ G RL+++
Sbjct: 48 QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 97
Score = 27.2 bits (61), Expect = 2.1
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 14 SKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQ 47
F ++ +++ + A L G ++
Sbjct: 52 GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein
kinase, SR protein, PRE-mRNA splicing, at binding,
chromosome partition; HET: SEP ANP; 2.90A {Homo
sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Length = 115
Score = 27.9 bits (62), Expect = 2.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 14 SKGFGFVTFQNKEAVDK 30
G G V F KE +
Sbjct: 50 RDGTGVVEFVRKEDMTY 66
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL
conjugation pathway, structural genomics consortium,
SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens}
Length = 89
Score = 27.2 bits (60), Expect = 2.4
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 167 NWDESQESGSKENEG-----QTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLV 219
+W + GS + EG GW++V D N Y EGK D+ +
Sbjct: 33 DWKWRDQDGSPQGEGTVTGELHNGWIDV--------TWDAGGSNSYRMGAEGKFDLKL 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 28.2 bits (64), Expect = 4.0
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 251 KVVQHLIEKCGADVNVTDSDGD---YGLDYAKAIEHTDLIEYLVN 292
V++ L E+ G + + D DG D KA IE +
Sbjct: 580 SVIRALTEETGTTIEIED-DGTVKIAATDGEKAKHAIRRIEEITA 623
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 4.3
Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 41/103 (39%)
Query: 141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLD 200
E++ K W +++++ + + ++ SK E + + +
Sbjct: 84 PESIRK-----------WREEQRKRL---QELDAASKVMEQEWR---------------E 114
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFN-------INQLDEN 236
+K++ EW + +Q+ K K N Q D +
Sbjct: 115 KAKKDLEEWNQRQS-----EQVEKNKINNRIADKAFYQQPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 6.3
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 12 GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 50
G + G G +T +NK+ T V+ L I P D
Sbjct: 507 GGASGLGVLTHRNKDG------TGVRVIVAGTLDINPDD 539
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 25.9 bits (57), Expect = 6.5
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 10 NTGLSKGFGFVTFQNKE----AVDKVFSTDSHVLEGSRLSIQ-PSDSHNSQ 55
NT VT+ +K+ A+DK+ + LE L + D +Q
Sbjct: 49 NTDSETAVVNVTYSSKDQARQALDKL---NGFQLENFTLKVAYIPDEMAAQ 96
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 27.2 bits (61), Expect = 8.1
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 251 KVVQHLIEKCGADVNVTDSDGD---YGLDYAKAIEHTDLIEYLVN 292
+++ + E GA++ + D DG D A I + N
Sbjct: 618 QMINQIQEDTGAEITIED-DGTIYIGAADGPAAEAARATINGIAN 661
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 251 KVVQHLIEKCGADVNVTDSDGD---YGLDYAKAIEHTDLIEYLV 291
KV++ ++ GA V++ D DG D AK D I+ +
Sbjct: 590 KVIREIVATTGAKVDIND-DGVVKVSASDGAKIKAAIDWIKSIT 632
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 27.1 bits (61), Expect = 8.4
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 251 KVVQHLIEKCGADVNVTDSDGD---YGLDYAKAIEHTDLIEYLV 291
++ L + G ++ D + + + E D I +
Sbjct: 587 YNLKKLQAETGVTISQVD-EETFSVFAPTPSAMHEARDFITEIC 629
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.368
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,292,389
Number of extensions: 236024
Number of successful extensions: 1264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 453
Length of query: 300
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 207
Effective length of database: 4,105,140
Effective search space: 849763980
Effective search space used: 849763980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)