RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy633
(300 letters)
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 103 bits (259), Expect = 7e-29
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 74 NMEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
+M F + ++ L + L + L Y YKQ+T+G CNI +PS + + KY A
Sbjct: 1 HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
W S+ + + +A +Y+ +++E+ W+D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPYWQD 89
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 93.7 bits (233), Expect = 5e-25
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
+ F++A + + L K +L Y+ YKQATVG N ++P + + K+K++AWN L
Sbjct: 2 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNEL 61
Query: 136 GQMAKSEAMSKYIALLNEVDAGW 158
+K +AM YI + E+ +
Sbjct: 62 KGTSKEDAMKAYIDKVEELKKKY 84
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 67.7 bits (164), Expect = 1e-13
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N E G L A ++ HL +VQ L+E+ ++N TDSDG L A ++ + E
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Query: 289 YLVNSGA 295
L GA
Sbjct: 271 LLCKRGA 277
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEHTDLIEYLVN 292
+ L A + +VQ L+E GA+VN + +G + L A + D++E L+
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Score = 33.0 bits (74), Expect = 0.029
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QLDENGLNCLHWACDRGHLKVVQHLIEK 259
++ + + + +D+ V+QL + N+N Q +E G LH A +V+ L+
Sbjct: 4 EDNHLLIKAVQNEDVDL-VQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 260 C 260
Sbjct: 62 G 62
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 65.1 bits (157), Expect = 7e-13
Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 6/202 (2%)
Query: 94 DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE 153
D +T L L ++ + + + + KS+ +A + M +
Sbjct: 73 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL 132
Query: 154 VDAGWEDKEQEEINWDESQESGSKENEG-----QTKGWVNVSSMINDESQLDDNEKNIYE 208
E + ++ KG + +
Sbjct: 133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 192
Query: 209 WAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+A + +VK L K N ++ DE+G + A G ++VV +LI++ GA V D
Sbjct: 193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVD 251
Query: 269 SDGDYGLDYAKAIEHTDLIEYL 290
+ A+A H ++++
Sbjct: 252 ATDHTARQLAQANNHHNIVDIF 273
Score = 46.7 bits (109), Expect = 1e-06
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-------GADVNVTD 268
+ + +T+ + NI + LHW + + LI GADVN D
Sbjct: 14 YAITEPITR-ESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD 71
Query: 269 SDGDYGLDYAKAIEHTD 285
D + L A
Sbjct: 72 CDENTPLMLAVLARRRR 88
Score = 43.6 bits (101), Expect = 1e-05
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
+ G LH+A ++ +V++L+ + G++ + D DG + A +++
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237
Query: 288 EYLVNSGA 295
YL+ GA
Sbjct: 238 MYLIQQGA 245
Score = 40.1 bits (92), Expect = 2e-04
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+D + I A+EG++++ V L + + ++ +D A H +V + ++
Sbjct: 219 EDGKTPIMLAAQEGRIEV-VMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVD-IFDR 275
Query: 260 C 260
C
Sbjct: 276 C 276
Score = 31.2 bits (69), Expect = 0.12
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA 295
LH G + + + + VN+ D L + + + E L+ A
Sbjct: 6 LHTEA-AGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 62.7 bits (151), Expect = 1e-11
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
+ G L + VK L + + + N + LH A GH +V ++L++ A VN
Sbjct: 8 SFMGHLPI-VKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAK 64
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
D L A I HT++++ L+ + A+
Sbjct: 65 DDQTPLHCAARIGHTNMVKLLLENNAN 91
Score = 60.0 bits (144), Expect = 8e-11
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
++N + G + LH A +GH +V L++ GA N SDG L AK + + +
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVT 379
Query: 288 EYL 290
+ L
Sbjct: 380 DVL 382
Score = 57.3 bits (137), Expect = 6e-10
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LH A GHL +V++L+++ GA NV++ + L A HT++ +YL+ + A
Sbjct: 4 LHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57
Score = 48.4 bits (114), Expect = 5e-07
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 3/170 (1%)
Query: 123 MEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQ 182
++ K+K NA Q A + ++ + +
Sbjct: 53 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112
Query: 183 TKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLH 242
+ + ++ AK GK+ + + L + +D + N +NGL LH
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV-AELLLE-RDAHPNAAGKNGLTPLH 170
Query: 243 WACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
A +L +V+ L+ + G + +G L A ++ L+
Sbjct: 171 VAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219
Score = 43.4 bits (101), Expect = 2e-05
Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 16/235 (6%)
Query: 51 SHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQAT 109
T +N + Y S + + T L A A
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 245
Query: 110 VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWD 169
+ + K + N+ KS + + Q I VDA
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 305
Query: 170 ESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN 229
+ Q + VN + A + +V L K +
Sbjct: 306 HYGNIKLVKFLLQHQADVNAK---------TKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 355
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHL--IEKCGADVNVTDSDGDYGLDYAKAIE 282
N++ +G L A G++ V L + + V V+D + + + + ++
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK---HRMSFPETVD 407
Score = 41.9 bits (97), Expect = 6e-05
Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 40/135 (29%)
Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
N N+ A+ G ++ K L + +N ++ LH A GH +V
Sbjct: 25 SPNVSNVKVETPLHMAARAGHTEV-AKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMV 82
Query: 254 QHLIEK--------------------------------CGADVNVTDSDGDYGLDYAKAI 281
+ L+E A G L A
Sbjct: 83 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142
Query: 282 EHTDLIEYLVNSGAH 296
+ E L+ AH
Sbjct: 143 GKVRVAELLLERDAH 157
Score = 36.5 bits (83), Expect = 0.003
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++ G LH A G++K+V+ + + ADVN G L A HTD++
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKF-LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347
Query: 289 YLVNSGA 295
L+ +GA
Sbjct: 348 LLLKNGA 354
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 58.9 bits (141), Expect = 1e-10
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 104 LYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQ 163
+ + + S + N+ + L D+
Sbjct: 127 VKHGSNRLYGDNMGESCLVK----AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 182
Query: 164 EEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLT 223
I + + N Q NEK K G+ + +
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242
Query: 224 KLKDF---NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
LK +N D NG CL+ A G++ +V L++ GAD + + G +D+
Sbjct: 243 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFG 299
Score = 53.1 bits (126), Expect = 9e-09
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 188 NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QLDENGLNCLHWACD 246
+ N S+ + + + + L + N+N +DE+G LHW
Sbjct: 58 LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTS 116
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
+L++V+HL++ G++ D+ G+ L A
Sbjct: 117 IANLELVKHLVKH-GSNRLYGDNMGESCLVKA 147
Score = 46.2 bits (108), Expect = 2e-06
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK-- 259
+ A + LD+L+ + K ++ I + + ++++L K
Sbjct: 188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 247
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+N DS+GD L+ A + + +++ L++ GA
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283
Score = 33.9 bits (76), Expect = 0.018
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKVVQHL 256
D+ +K E + L ++++ + N N + L+ V
Sbjct: 32 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91
Query: 257 IEKCGADVNV-TDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
++N+ D G+ L + +I + +L+++LV G++
Sbjct: 92 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 53.4 bits (127), Expect = 8e-09
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 22/184 (11%)
Query: 120 WYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN 179
W N+ SL ++ EA+ ++ ++ + + N
Sbjct: 24 WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ----------LLCLYYAHYN 73
Query: 180 EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML--VKQLTKLKDFNINQLDENG 237
+ W + + +E + A G L + L D + +
Sbjct: 74 RNAKQLWSDA------HKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKVIQAEN 126
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD--GDYGLDYAKAIEHTDLIEYLVNSGA 295
A + GHL V+ L E + + A H ++ L
Sbjct: 127 YQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185
Query: 296 HSSN 299
+
Sbjct: 186 TEAT 189
Score = 44.9 bits (105), Expect = 6e-06
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
+ ++L + +G D L + L L D
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFD--------LVTKSECLQGFYMLRNLIRRNDEV 290
Query: 249 HLKVVQHLIE----KCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
L ++ L+ K A D + L A + + L++
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338
Score = 39.9 bits (92), Expect = 3e-04
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG--ADVNVT 267
A+ G L +L + + + + A + GHL V+ L E A +
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193
Query: 268 DSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
+ A H ++I +L++ +
Sbjct: 194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 226
Score = 25.6 bits (55), Expect = 7.7
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 7/66 (10%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
+ + + G +V + L D I +L++
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTK-------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301
Query: 294 GAHSSN 299
+
Sbjct: 302 PGIKAL 307
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 52.5 bits (124), Expect = 1e-08
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
+N D+ G L A GH L+EK GA+ ++ D+ G D A + +
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVK 219
Query: 288 EYLVNSGAHS 297
++ +N+ +
Sbjct: 220 KFFLNNVVDA 229
Score = 48.3 bits (113), Expect = 3e-07
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
LH AC VQ L+ + + D DG L ++ + + ++ +L++ +
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59
Score = 36.3 bits (82), Expect = 0.002
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
E + V++L K + Q D++G LHW+ ++ L+ K
Sbjct: 8 CMENEFFK-VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56
Score = 31.7 bits (70), Expect = 0.071
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
++ EG D L + + +D G A + +V + + D
Sbjct: 176 LFHALAEGHGDA-AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN-VVD 228
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 51.4 bits (121), Expect = 3e-08
Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 1/185 (0%)
Query: 103 ALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKE 162
L+ ++ + + + E S A +
Sbjct: 43 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102
Query: 163 QEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQL 222
E N+D N + + D +D + + QL
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162
Query: 223 TKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
N+N +G + LH A RG L +V+ L+ GAD ++ + D L A++
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRR 221
Query: 283 HTDLI 287
D++
Sbjct: 222 VIDIL 226
Score = 47.5 bits (111), Expect = 4e-07
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 235 ENGLNCLHWACDRGHLKVVQHLIE---KCGADVNVTDSDGDYGLDYA 278
E+G LH A +G+L V L+ + G ++++ ++ L A
Sbjct: 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47
Score = 34.4 bits (77), Expect = 0.011
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
+ G L + V+ L + + + + + L A R + +++
Sbjct: 185 SGRGLLPL-VRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR 227
Score = 31.4 bits (69), Expect = 0.11
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 4/169 (2%)
Query: 130 NAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN---EGQTKGW 186
+ +N+L Q A+ + + + ++ + E+
Sbjct: 34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 93
Query: 187 VNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD 246
+ + D + + A + V+ L + ++G + L A +
Sbjct: 94 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 153
Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
L +VQ L++ GA+VN G L A L+ LV SGA
Sbjct: 154 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 201
Score = 26.3 bits (56), Expect = 4.1
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 210 AKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV 266
+G L V +L L ++ + LH A L V L+ GA
Sbjct: 11 VVQGNLPA-VHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGASPMA 68
Query: 267 TDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
D G A + L++S A
Sbjct: 69 LDRHGQTAAHLACEHRSPTCLRALLDSAAP 98
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 50.9 bits (120), Expect = 5e-08
Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 7/139 (5%)
Query: 152 NEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAK 211
++ +++ + E+ + + S IND ++ A
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
+G ++L +++N D +G LH A G + + L+E D+ + G
Sbjct: 209 KGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVG 265
Query: 272 DYGLDYAKAIEHTDLIEYL 290
D A D++ YL
Sbjct: 266 QTAFDVADE----DILGYL 280
Score = 47.8 bits (112), Expect = 5e-07
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDEN-------GLNCLHWACDRGHLKVVQHLIEKCGA 262
AK+ + + L + + D + AC G + V L+E+ GA
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GA 64
Query: 263 DVNVTDSDGDYGLDYAKAIEHTDLIEY 289
D+N + DG L A ++ D++++
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKF 91
Score = 46.6 bits (109), Expect = 1e-06
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
N + ++G LH A +G+ +V++ LI+ DVN+ D DG L A +
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 288 EYLVNSGA 295
LV +
Sbjct: 249 RILVENLC 256
Score = 29.3 bits (64), Expect = 0.56
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
G + V +L + + +IN + +GL LH AC ++ +V+ L+E
Sbjct: 48 CSSGDTEE-VLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 49.3 bits (116), Expect = 2e-07
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
LH A + V++ L++ GAD G L A + L L GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 46.6 bits (109), Expect = 1e-06
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGLDYA 278
+ E+G LH A H + L+ A +++ + G L A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLA 52
Score = 33.9 bits (76), Expect = 0.017
Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 2/87 (2%)
Query: 210 AKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
L L ++ ++ G LH A G V+ L +
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76
Query: 269 SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
A + L+
Sbjct: 77 GGHTAL-HLACRVRAHTCACVLLQPRP 102
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 48.0 bits (113), Expect = 3e-07
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
+ N D G LH ACD ++ + L+ + GA + + + + L AK ++
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAKG-GLGLIL 217
Query: 288 EYLV 291
+ +V
Sbjct: 218 KRMV 221
Score = 43.8 bits (102), Expect = 8e-06
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
+N +++NG LH+A + ++ L+E GA+ + D + A A + +I
Sbjct: 95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIH 153
Query: 289 YL 290
L
Sbjct: 154 IL 155
Score = 42.3 bits (98), Expect = 2e-05
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 33/124 (26%)
Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG---------------- 248
+ A GKL+ L + + K + D++ LHWAC G
Sbjct: 6 MVCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64
Query: 249 ----------------HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
+ + GA VN + +G L YA + ++ L+
Sbjct: 65 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124
Query: 293 SGAH 296
GA+
Sbjct: 125 GGAN 128
Score = 39.6 bits (91), Expect = 2e-04
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
++ A + + ++ L + N + D +H A +G+LK++ L+ N
Sbjct: 107 LHYAASKNRHEI-AVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-STN 163
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
+ D++G+ L A E + + LV+ GA
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGA 193
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 44.8 bits (104), Expect = 3e-06
Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 5/188 (2%)
Query: 103 ALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKE 162
+L+ A + + K + + A A + + + +
Sbjct: 26 SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA 85
Query: 163 QEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQL 222
+ + EG + + + IN DN + +
Sbjct: 86 RMHDGTTPLILAARLAIEGMVEDLITADADINAA----DNSGKTALHWAAAVNNTEAVNI 141
Query: 223 TKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
+ N + D+ L A G + + L++ A+ +TD D A
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERL 200
Query: 283 HTDLIEYL 290
H D++ L
Sbjct: 201 HHDIVRLL 208
Score = 32.1 bits (71), Expect = 0.063
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 218 LVKQLTKLKDFNIN-QLDENGLNCLHWACDRGHLKVVQHLIEKC 260
++ L + +N +D+ G LH A + L++
Sbjct: 4 VISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDAG 46
Score = 30.9 bits (68), Expect = 0.13
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
D +IN D +G LHWA + + V + A+ + D + L A +
Sbjct: 112 ADADINAADNSGKTALHWAAAVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYE 170
Query: 286 LIEYLVNSGA 295
+ L+++ A
Sbjct: 171 ASKALLDNFA 180
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 43.0 bits (99), Expect = 8e-06
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273
N L A RG L+ + L++ +VN + G
Sbjct: 3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRT 36
Score = 36.4 bits (82), Expect = 0.002
Identities = 13/102 (12%), Positives = 25/102 (24%)
Query: 158 WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDM 217
+ + G + D + D+ A +
Sbjct: 54 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 113
Query: 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
+V+ L K N+ + G A G +VV +
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155
Score = 32.6 bits (72), Expect = 0.031
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
D G LH A GHL+VV+ L++ ++V + GD D A+ +++ + +
Sbjct: 96 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155
Query: 294 G 294
G
Sbjct: 156 G 156
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 41.3 bits (95), Expect = 2e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
L A RG ++ V+ L+ + + + G
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFG 36
Score = 37.5 bits (85), Expect = 6e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
++N D G +H A GH VV L + +D++ D+ G L+ A DL+
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLV 149
Query: 288 EYLVN 292
+ L
Sbjct: 150 DILQG 154
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 42.2 bits (97), Expect = 3e-05
Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
N A +V+ L L Q NG LH A D + +V L+ KCG
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCG 168
Query: 262 ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
ADVN G T + + L
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202
Score = 40.3 bits (92), Expect = 1e-04
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKC---GADVNVTDSDGDYGLDYAKAIEH 283
+G + LH A + +I + A +N ++ L A
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51
Score = 33.3 bits (74), Expect = 0.023
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272
++N++ G + R ++ Q L + ++ + D
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.2 bits (91), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
D TG SKGFGFV F E KV S H+++G + +S SQ
Sbjct: 41 KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQ 89
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 38.1 bits (88), Expect = 1e-04
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
M D NT S+GFGFVT+ E VD + H ++G + + + S
Sbjct: 39 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 84
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 38.0 bits (88), Expect = 1e-04
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
M D T S+GFGFVTF ++ VDKV + H L+ + +
Sbjct: 33 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.0 bits (85), Expect = 2e-04
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ-PSD 50
+ K F F+ F++ + + + D + +G L I+ P D
Sbjct: 39 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 84
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 38.4 bits (88), Expect = 3e-04
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 39/134 (29%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFN----INQLDENGLNCLHWAC---DRGHLKVVQHLIE 258
+ E K + L++ D + E LH A DR L +V L++
Sbjct: 10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69
Query: 259 --------------------------------KCGADVNVTDSDGDYGLDYAKAIEHTDL 286
+ A + + + G+ LD AK ++H
Sbjct: 70 NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129
Query: 287 IEYLVNSGAHSSNT 300
E L + + N+
Sbjct: 130 EELLTQALSGRFNS 143
Score = 33.4 bits (75), Expect = 0.012
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
+I +E+G L A H + L + N
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 145
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.5 bits (84), Expect = 3e-04
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
+ + D T +GF F+TF+ +E V K+ H + S+ I+
Sbjct: 27 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 37.7 bits (86), Expect = 4e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVN-VTDSDGDYGLDYAKAIE--HTDLIEYLVN 292
+G LH A +++V + L+E GA V +T SD D + +E +T ++L
Sbjct: 66 DGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124
Query: 293 SGA 295
Sbjct: 125 VQE 127
Score = 32.0 bits (71), Expect = 0.031
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNV 266
L L + G +VQ +I + D ++
Sbjct: 2 LALLLDSSLEGEFDLVQRIIYE-VDDPSL 29
Score = 31.2 bits (69), Expect = 0.053
Identities = 3/34 (8%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 229 NINQLDENGLN---CLHWACDRGHLKVVQHLIEK 259
+ + + + + G+ + Q L
Sbjct: 92 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.1 bits (83), Expect = 4e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
++ ++ D TG S+GFGFV F+ E+VDKV H L G + +
Sbjct: 27 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 73
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 36.6 bits (84), Expect = 5e-04
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
+ VM D + S+GFGFVTF + VD + H ++G + + + +
Sbjct: 48 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 98
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 37.5 bits (85), Expect = 5e-04
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
++N D + LHWA + H +VV+ L+ K GADV+ D + + DL E
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 289 YL 290
L
Sbjct: 151 IL 152
Score = 34.8 bits (78), Expect = 0.005
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
V +L +++ + + D G+ + + L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 31.4 bits (69), Expect = 0.070
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 241 LHWACDRGHLKVVQHLIEKCGADVN 265
L A G V+ L+ GA
Sbjct: 6 LLEAARAGQDDEVRILMAN-GAPFT 29
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 35.3 bits (81), Expect = 0.001
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1 MNASVMFDKN-TGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQPSDS 51
+ TG +GFGFV F K+ K F+ S L G RL ++ +DS
Sbjct: 36 KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 89
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
+ NT ++G +V +++ + L + +++ + K + KE
Sbjct: 37 IRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKE 96
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 34.2 bits (76), Expect = 0.005
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 235 ENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
E + L A RG ++ V+ L+E GA+ N
Sbjct: 1 EPSADWLATAAARGRVEEVRALLE-AGANPN 30
Score = 30.3 bits (66), Expect = 0.10
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIE 258
++ D G + A + GH V ++L
Sbjct: 93 ARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 32.7 bits (74), Expect = 0.008
Identities = 4/48 (8%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
+ + G+ G V F++++ + + ++ +
Sbjct: 37 PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 84
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 31.6 bits (71), Expect = 0.031
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
+ D+ TG S+G+GFVT ++ A ++ + +++G + ++ +
Sbjct: 43 ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 31.4 bits (71), Expect = 0.032
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 50
G V+F++ E D T D G +++ Q D
Sbjct: 47 RKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 30.3 bits (68), Expect = 0.063
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 44
+ + + + +Q+K K S D + S +
Sbjct: 25 AQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIM 68
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 29.9 bits (65), Expect = 0.17
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 241 LHWACDRGHLKVVQHLIEKC 260
WA G L V+ + K
Sbjct: 6 FMWALKNGDLDEVKDYVAKG 25
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Length = 81
Score = 27.5 bits (61), Expect = 0.52
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 20 VTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF 79
V F+ K D FS + H + ++ H K K A MA+ + +
Sbjct: 9 VNFKMKGVADAAFSHEFH-----LGMYKCNECHT----KLFAYKAGAKRFTMADMDKGKS 59
Query: 80 NQAC 83
AC
Sbjct: 60 CGAC 63
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.3 bits (60), Expect = 0.85
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 5 VMFDKNTGLSKGFGFVTFQNKEAVDKV---FSTDSHVLEGSRLSI---QPSDSHNSQVKK 58
+ ++GF FV +++ A L G ++++ +P + V +
Sbjct: 35 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 94
Query: 59 KI 60
+
Sbjct: 95 TV 96
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 25.7 bits (56), Expect = 2.8
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
+ DK TG +G FV + +E + S ++ + EG +
Sbjct: 39 LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 25.9 bits (56), Expect = 3.0
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 4/47 (8%)
Query: 15 KGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSI---QPSDSHNSQVK 57
+ F N + G + + Q +S +
Sbjct: 46 FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLA 92
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.9 bits (54), Expect = 4.8
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 6 MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
DK + GF FV + ++ + + L+ +
Sbjct: 40 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 82
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
[TaxId: 354]}
Length = 179
Score = 25.4 bits (55), Expect = 8.5
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
E +L + + E L + K + L + + D L +
Sbjct: 58 GEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLG-DQVGYPENYLD--ALGELY 114
Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
+ GA + + S Y + ++A+ +
Sbjct: 115 SFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFV 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.368
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,051,343
Number of extensions: 45765
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 100
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)