BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6330
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z4F|A Chain A, Solution Structure Of The Discoidin Domain Of Ddr2
Length = 173
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 11 RLKVEQAGGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILE 69
RL E+ GAWCP+ PVE D++EF+QIDL + H +T V TQGR+ G G E+ Y +
Sbjct: 41 RLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKIN 100
Query: 70 YWRPGLR--DWKQYYG 83
Y R G R W+ +G
Sbjct: 101 YSRDGTRWISWRNRHG 116
>pdb|2WUH|A Chain A, Crystal Structure Of The Ddr2 Discoidin Domain Bound To A
Triple-Helical Collagen Peptide
Length = 178
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 11 RLKVEQAGGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILE 69
RL E+ GAWCP+ PVE D++EF+QIDL + H +T V TQGR+ G G E+ Y +
Sbjct: 50 RLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKIN 109
Query: 70 YWRPGLR--DWKQYYG 83
Y R G R W+ +G
Sbjct: 110 YSRDGTRWISWRNRHG 125
>pdb|4AG4|A Chain A, Crystal Structure Of A Ddr1-Fab Complex
Length = 351
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL+ GAWCP V E++Q+DL H+V V TQGR+ G G+E++ Y L Y
Sbjct: 38 RLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRY 97
Query: 71 WRPGLR--DWKQYYG 83
R G R WK +G
Sbjct: 98 SRDGRRWMGWKDRWG 112
>pdb|3BN6|A Chain A, Crystal Structure Of The C2 Domain Of Bovine Lactadherin
At 1.67 Angstrom Resolution
Length = 158
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW + E++QIDLGS VTG+ TQG D G Q Y Y + Y
Sbjct: 39 RLDNQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFGHIQ-YVAAYRVAY 94
Query: 71 WRPGLRDWKQY 81
G+ W +Y
Sbjct: 95 GDDGVT-WTEY 104
>pdb|2PQS|A Chain A, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|B Chain B, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|C Chain C, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|D Chain D, Crystal Structure Of The Bovine Lactadherin C2 Domain
Length = 159
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW + E++QIDLGS VTG+ TQG D G Q Y Y + Y
Sbjct: 40 RLDNQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFGHIQ-YVAAYRVAY 95
Query: 71 WRPGLRDWKQY 81
G+ W +Y
Sbjct: 96 GDDGVT-WTEY 105
>pdb|2QQJ|A Chain A, Crystal Structure Of The B1b2 Domains From Human
Neuropilin-2
Length = 325
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 8 AKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYI 67
+ RL ++G W P+ P + E++Q+DLG+P V GV QG RG +
Sbjct: 193 SAARLVSSRSG--WFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQG----ARGGDSITAV- 245
Query: 68 LEYWRPGLRDWKQYYGGNGK 87
R +R +K Y NGK
Sbjct: 246 --EARAFVRKFKVSYSLNGK 263
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 32 REFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRDWKQY-YGGNGKA 88
+E++Q+DL ++T + TQG + Y + Y LE G DW Y +G N K
Sbjct: 56 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 113
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 8 AKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYI 67
+ RL ++G W P+ P + E++Q+DLG+P V GV QG RG +
Sbjct: 322 SAARLVSSRSG--WFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQG----ARGGDSITAV- 374
Query: 68 LEYWRPGLRDWKQYYGGNGK 87
R +R +K Y NGK
Sbjct: 375 --EARAFVRKFKVSYSLNGK 392
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 32 REFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRDWKQY-YGGNGKA 88
+E++Q+DL ++T + TQG + Y + Y LE G DW Y +G N K
Sbjct: 185 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 242
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 8 AKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYI 67
+ RL ++G W P+ P + E++Q+DLG+P V GV QG RG +
Sbjct: 441 SAARLVSSRSG--WFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQG----ARGGDSITAV- 493
Query: 68 LEYWRPGLRDWKQYYGGNGK 87
R +R +K Y NGK
Sbjct: 494 --EARAFVRKFKVSYSLNGK 511
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 32 REFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRDWKQY-YGGNGKA 88
+E++Q+DL ++T + TQG + Y + Y LE G DW Y +G N K
Sbjct: 304 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 361
>pdb|2L9L|A Chain A, Nmr Structure Of The Mouse Mfg-e8 C2 Domain
Length = 170
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW ++ +E++Q+DLG+ VTG+ TQG D G Q Y Y + +
Sbjct: 45 RLDNQGKINAWTAQS---NSAKEWLQVDLGTQRQVTGIITQGARDFGHIQ-YVASYKVAH 100
Query: 71 WRPGLRDWKQY 81
G++ W Y
Sbjct: 101 SDDGVQ-WTVY 110
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 32.3 bits (72), Expect = 0.059, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW K P +I++DL +P ++ G++TQG Y ++I+ Y
Sbjct: 404 RLHYSGSINAWSTKEPFS-----WIKVDLLAPMIIHGIKTQGA-RQKFSSLYISQFIIMY 457
Query: 71 WRPGLRDWKQYYGGN 85
G + W+ Y G +
Sbjct: 458 SLDG-KKWQTYRGNS 471
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 8 AKRRLKVEQAGGAWCPK--NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
+K RL ++ AW P+ NP +E++Q+D VTGV TQG
Sbjct: 558 SKARLHLQGRSNAWRPQVNNP-----KEWLQVDFQKTMKVTGVTTQG 599
>pdb|3HNB|M Chain M, Factor Viii Trp2313-His2315 Segment Is Involved In
Membrane Shown By Crystal Structure Of Complex Between
Factor Viii C And An Inhibitor
pdb|3HNY|M Chain M, Factor Viii Trp2313-His2315 Segment Is Involved In
Membrane Binding As Shown By Crystal Structure Of
Complex Between Factor Viii C2 Domain And An Inhibitor
pdb|3HOB|M Chain M, Factor Viii Trp2313-His2315 Segment Is Involved In
Membrane Shown By Crystal Structure Of Complex Between
Factor Viii C And An Inhibitor
pdb|3HOB|A Chain A, Factor Viii Trp2313-His2315 Segment Is Involved In
Membrane Shown By Crystal Structure Of Complex Between
Factor Viii C And An Inhibitor
Length = 159
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 8 AKRRLKVEQAGGAWCPK--NPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEE 65
+K RL ++ AW P+ NP +E++Q+D VTGV TQG Y +E
Sbjct: 37 SKARLHLQGRSNAWRPQVNNP-----KEWLQVDFQKTMKVTGVTTQG-VKSLLTSMYVKE 90
Query: 66 YILEYWRPGLRDWKQYYGGNGKAE 89
+++ + G W ++ NGK +
Sbjct: 91 FLISSSQDG-HQWTLFF-QNGKVK 112
>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 770
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW K P +I++DL +P ++ G++TQG Y ++I+ Y
Sbjct: 490 RLHYSGSINAWSTKEPFS-----WIKVDLLAPMIIHGIKTQGA-RQKFSSLYISQFIIMY 543
Query: 71 WRPGLRDWKQYYGGN 85
G + W+ Y G +
Sbjct: 544 SLDG-KKWQTYRGNS 557
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 8 AKRRLKVEQAGGAWCPK--NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
+K RL ++ AW P+ NP +E++Q+D VTGV TQG
Sbjct: 644 SKARLHLQGRSNAWRPQVNNP-----KEWLQVDFQKTMKVTGVTTQG 685
>pdb|1D7P|M Chain M, Crystal Structure Of The C2 Domain Of Human Factor Viii At
1.5 A Resolution At 1.5 A
Length = 159
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 8 AKRRLKVEQAGGAWCPK--NPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEE 65
+K RL ++ AW P+ NP +E++Q+D VTGV TQG Y +E
Sbjct: 36 SKARLHLQGRSNAWRPQVNNP-----KEWLQVDFQKTMKVTGVTTQG-VKSLLTSMYVKE 89
Query: 66 YILEYWRPGLRDWKQYYGGNGKAE 89
+++ + G W ++ NGK +
Sbjct: 90 FLISSSQDG-HQWTLFF-QNGKVK 111
>pdb|1IQD|C Chain C, Human Factor Viii C2 Domain Complexed To Human Monoclonal
Bo2c11 Fab
Length = 156
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 8 AKRRLKVEQAGGAWCPK--NPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEE 65
+K RL ++ AW P+ NP +E++Q+D VTGV TQG Y +E
Sbjct: 33 SKARLHLQGRSNAWRPQVNNP-----KEWLQVDFQKTMKVTGVTTQG-VKSLLTSMYVKE 86
Query: 66 YILEYWRPGLRDWKQYYGGNGKAE 89
+++ + G W ++ NGK +
Sbjct: 87 FLISSSQDG-HQWTLFF-QNGKVK 108
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 19 GAWCP-KNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYW--RPGL 75
AW K E + +IQ+D+ ++TG+QTQG H YT E+ + Y R
Sbjct: 369 NAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGA-KHYLKPYYTTEFCVAYSLDRKNW 427
Query: 76 RDWK-------QYYGGNGKAEYTEE 93
R +K Y+GGN A +E
Sbjct: 428 RIFKGNSTRNVMYFGGNSDASTIKE 452
>pdb|2ORX|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
pdb|2ORZ|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
Length = 314
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRDWKQYYG 83
P E RE+IQ+DLG VT V TQG + + Y + Y ++ G DW
Sbjct: 44 TPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWITLKE 102
Query: 84 GN 85
GN
Sbjct: 103 GN 104
>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-1
Length = 450
Score = 30.0 bits (66), Expect = 0.29, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 23 PKN---PVEKDIREFIQIDLGSPHVVTGVQTQG 52
P+N P E RE+IQ+DLG VT V TQG
Sbjct: 175 PENGWTPGEDSYREWIQVDLGLLRFVTAVGTQG 207
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL ++G A P P I E++QIDLG +V G+ QG H + + ++ + Y
Sbjct: 327 RLVTSRSGWA-LPPAP-HSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGY 383
Query: 71 WRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLR 104
G DWK + + + E Y P LR
Sbjct: 384 SNNG-SDWKMIMDDSKRKAKSFEGNNNYDTPELR 416
>pdb|2QQI|A Chain A, Crystal Structure Of The B1b2 Domains From Human
Neuropilin-1
Length = 318
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
P E RE+IQ+DLG VT V TQG
Sbjct: 48 TPGEDSYREWIQVDLGLLRFVTAVGTQG 75
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 31 IREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEY 90
I E++QIDLG +V G+ QG H + + ++ + Y G DWK + +
Sbjct: 213 INEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSNNG-SDWKMIMDDSKRKAK 270
Query: 91 TEEYILEYWRPGLRDW 106
+ E Y P LR +
Sbjct: 271 SFEGNNNYDTPELRTF 286
>pdb|4DEQ|A Chain A, Structure Of The Neuropilin-1VEGF-A Complex
pdb|4DEQ|B Chain B, Structure Of The Neuropilin-1VEGF-A Complex
Length = 218
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
P E RE+IQ+DLG VT V TQG
Sbjct: 47 TPGEDSYREWIQVDLGLLRFVTAVGTQG 74
>pdb|2QQN|A Chain A, Neuropilin-1 B1 Domain In Complex With A Vegf-Blocking
Fab
Length = 159
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
P E RE+IQ+DLG VT V TQG
Sbjct: 48 TPGEDSYREWIQVDLGLLRFVTAVGTQG 75
>pdb|1KEX|A Chain A, Crystal Structure Of The B1 Domain Of Human Neuropilin-1
Length = 155
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
P E RE+IQ+DLG VT V TQG
Sbjct: 44 TPGEDSYREWIQVDLGLLRFVTAVGTQG 71
>pdb|3I97|A Chain A, B1 Domain Of Human Neuropilin-1 Bound With Small
Molecule Eg
pdb|3I97|B Chain B, B1 Domain Of Human Neuropilin-1 Bound With Small
Molecule Eg
Length = 158
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQG 52
P E RE+IQ+DLG VT V TQG
Sbjct: 47 TPGEDSYREWIQVDLGLLRFVTAVGTQG 74
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 25 NPVEKDIREFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRDWKQYYG 83
P E +E+IQ+DLG VT V TQG + + Y + Y ++ G DW
Sbjct: 298 TPGEDSYKEWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWISLKE 356
Query: 84 GN 85
GN
Sbjct: 357 GN 358
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 40 GSPHVVT----GVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQ 80
G+ H++T Q QG +D Y E +L++ R + +W+
Sbjct: 120 GADHIITMDLHAAQIQGFFDIPVDNLYAEPAVLKWIRENISEWRN 164
>pdb|2O48|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2O4U|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2POQ|X Chain X, Dimeric Dihydrodiol Dehydrogenase Complexed With
Inhibitor, Isoascorbic Acid
pdb|3OHS|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase In Complex With Dihydroxyacetone
Length = 334
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 20 AWCPKNPVEK-DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD 77
WCP V K + +EF+ + V +D+G G Y +++ E R GL++
Sbjct: 253 CWCPTELVVKGEHKEFL---------LPPVPKNCNFDNGAGMSYEAKHVRECLRKGLKE 302
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 LEYWRPGLRDWKQYYGGNGKAVDSPH 121
+EYW+ GLR + G AVDS H
Sbjct: 385 VEYWKKGLRHSVYFTHGIRNAVDSGH 410
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 22 CPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRG 59
P P+E D +E ++ L SP++ + RYDH G
Sbjct: 382 TPIPPLEADPQEVLRRLLASPNLASREAVYERYDHQVG 419
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 38 DLGSPHVVTGVQTQGRYDHG--RGQEYTEEYILE--YWRPGLRDWKQYYGGNGKAEYTEE 93
D P + V +G D G G +Y++ + +E +W R ++YYG N A+ +
Sbjct: 534 DTARPTPIGWVPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRD 593
Query: 94 YILE 97
+ E
Sbjct: 594 VMAE 597
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,539
Number of Sequences: 62578
Number of extensions: 224418
Number of successful extensions: 515
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 42
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)