Query psy6330
Match_columns 123
No_of_seqs 107 out of 1028
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:41:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hny_M Coagulation factor VIII 100.0 1.8E-30 6E-35 186.9 8.3 107 5-118 34-150 (159)
2 2wuh_A Discoidin domain recept 100.0 1.8E-29 6.2E-34 184.9 8.9 112 5-118 44-166 (178)
3 1czt_A Protein (coagulation fa 100.0 8.8E-29 3E-33 177.9 8.8 107 5-118 32-150 (160)
4 4ag4_A Epithelial discoidin do 100.0 1E-28 3.4E-33 197.6 9.2 112 5-118 32-153 (351)
5 4deq_A Neuropilin-1, vascular 99.9 4.8E-28 1.7E-32 182.7 8.8 106 5-118 32-148 (218)
6 3bn6_A Lactadherin; anticoagul 99.9 8E-28 2.7E-32 172.3 8.2 107 5-118 33-151 (158)
7 2vm9_A Discoidin-2, discoidin 99.9 2.1E-27 7E-32 182.7 8.7 105 5-118 28-147 (257)
8 2wn3_A Discoidin-1 subunit A; 99.9 2.6E-26 9.1E-31 176.4 8.1 104 4-118 27-146 (254)
9 4gz9_A Neuropilin-1, A5 protei 99.9 6.9E-26 2.3E-30 190.0 9.3 106 5-118 283-399 (577)
10 2qqj_A Neuropilin-2; VEGF rece 99.9 2.4E-24 8.2E-29 169.2 9.4 106 5-118 34-150 (325)
11 2w1s_A Hyaluronoglucosaminidas 99.9 3.6E-24 1.2E-28 158.4 8.2 100 5-109 36-147 (192)
12 2qqi_A Neuropilin-1; VEGF rece 99.9 9.4E-24 3.2E-28 165.6 9.1 106 5-118 33-149 (318)
13 4gz9_A Neuropilin-1, A5 protei 99.9 1.9E-23 6.6E-28 175.2 9.9 108 5-118 439-558 (577)
14 2qqj_A Neuropilin-2; VEGF rece 99.9 8.6E-23 3E-27 160.4 10.7 109 5-118 190-315 (325)
15 2qqi_A Neuropilin-1; VEGF rece 99.9 5.2E-23 1.8E-27 161.3 8.9 108 5-118 189-308 (318)
16 2qqm_A Neuropilin-1; VEGF rece 99.9 9.5E-23 3.3E-27 165.9 9.9 108 5-118 321-440 (450)
17 1sdd_B Coagulation factor V; c 99.9 3.6E-23 1.2E-27 175.0 7.2 107 5-118 519-637 (647)
18 2qqo_A Neuropilin-2; VEGF rece 99.9 1.4E-22 4.7E-27 165.5 10.3 108 6-118 320-444 (460)
19 2r7e_B Coagulation factor VIII 99.9 3E-23 1E-27 179.4 5.6 107 6-119 642-758 (770)
20 2qqk_A Neuropilin-2; VEGF rece 99.9 5.2E-22 1.8E-26 165.9 10.4 109 5-118 438-563 (579)
21 2qqk_A Neuropilin-2; VEGF rece 99.9 5.2E-22 1.8E-26 165.9 9.5 106 5-118 282-398 (579)
22 2qqo_A Neuropilin-2; VEGF rece 99.9 6.7E-22 2.3E-26 161.4 8.9 106 5-118 163-279 (460)
23 1sdd_B Coagulation factor V; c 99.9 1.2E-21 4E-26 165.8 8.8 105 5-111 355-472 (647)
24 2qqm_A Neuropilin-1; VEGF rece 99.8 2.1E-21 7.1E-26 158.0 9.2 106 5-118 165-281 (450)
25 2r7e_B Coagulation factor VIII 99.8 7.3E-21 2.5E-25 164.5 5.0 105 5-118 484-600 (770)
26 2v72_A CBM32, EXO-alpha-sialid 99.5 2.5E-14 8.5E-19 98.2 8.9 97 7-111 28-130 (143)
27 2j1a_A Hyaluronidase, CBM32; p 99.4 5.6E-13 1.9E-17 91.7 9.0 84 19-109 42-128 (150)
28 2jda_A Yecbm32; hypothetical p 99.4 6.9E-13 2.3E-17 91.4 7.8 92 7-112 26-122 (145)
29 4a41_A GH89_CBM32-5, alpha-N-a 99.4 3.6E-12 1.2E-16 90.8 10.8 90 18-111 56-148 (161)
30 4a42_A GH89_CBM32-4, alpha-N-a 99.3 3.3E-12 1.1E-16 90.2 7.7 81 17-109 51-136 (149)
31 3f2z_A Uncharacterized protein 99.3 9.4E-12 3.2E-16 87.9 9.4 91 18-112 39-133 (159)
32 3ggl_A Putative chitobiase; X- 99.3 9.9E-12 3.4E-16 88.8 8.1 92 18-112 49-143 (169)
33 4a4a_A Alpha-N-acetylglucosami 99.1 8.1E-11 2.8E-15 103.3 8.4 88 7-109 44-136 (914)
34 3eyp_A Putative alpha-L-fucosi 99.1 1.6E-10 5.5E-15 95.2 8.8 87 17-112 353-444 (469)
35 2v5d_A O-GLCNACASE NAGJ; famil 99.1 2.4E-10 8.2E-15 98.5 8.0 78 30-111 637-717 (737)
36 4a3z_A GH89_CBM32, alpha-N-ace 99.0 5.3E-10 1.8E-14 80.2 6.9 84 18-110 55-141 (161)
37 2zxq_A Endo-alpha-N-acetylgala 99.0 6.4E-11 2.2E-15 106.6 0.0 91 19-113 1260-1355(1376)
38 1k3i_A Galactose oxidase precu 98.8 8.5E-09 2.9E-13 86.2 8.6 90 18-110 53-148 (656)
39 3lei_A Platelet aggregation fa 98.8 1.8E-08 6.1E-13 70.9 8.4 86 18-109 38-131 (153)
40 3ues_A Alpha-1,3/4-fucosidase; 98.8 2.1E-08 7.1E-13 82.9 9.9 87 17-112 378-466 (478)
41 1w8o_A Bacterial sialidase; 3D 98.8 2.7E-08 9.3E-13 82.3 9.7 90 18-111 489-584 (601)
42 3hnm_A Putative chitobiase; PS 98.6 2.4E-07 8.2E-12 67.0 8.2 90 18-109 50-145 (172)
43 4gwi_A Lectinolysin, platelet 98.6 1.5E-07 5.1E-12 66.7 6.9 76 30-108 52-130 (153)
44 2j22_A Fucolectin-related prot 98.4 7E-07 2.4E-11 62.9 7.2 74 30-108 55-131 (148)
45 3cqo_A FBP32; F-lectin, fucole 98.4 1E-06 3.5E-11 67.6 7.7 85 18-108 180-274 (293)
46 2j1v_A Fucolectin-related prot 98.3 1.7E-06 5.8E-11 60.9 7.7 73 30-108 58-134 (151)
47 1k12_A Lectin; beta barrel, pr 98.3 1E-06 3.5E-11 62.3 6.4 75 30-108 56-138 (158)
48 3cqo_A FBP32; F-lectin, fucole 98.3 4.3E-06 1.5E-10 64.1 8.8 78 30-109 48-131 (293)
49 1tvg_A LOC51668 protein; cell 98.2 8E-06 2.7E-10 58.0 8.4 78 18-109 46-130 (153)
50 2cho_A Glucosaminidase, hexosa 98.0 1.5E-06 5.1E-11 74.9 2.4 83 19-109 615-698 (716)
51 3gdb_A Endo-D, putative unchar 98.0 6.4E-07 2.2E-11 78.7 0.0 86 19-110 835-926 (937)
52 2yc2_A IFT25, intraflagellar t 97.9 6.7E-05 2.3E-09 52.0 8.2 80 17-109 37-122 (139)
53 2yfu_A Carbohydrate binding fa 97.2 0.0015 5E-08 46.4 7.6 74 32-109 44-125 (155)
54 3gza_A Putative alpha-L-fucosi 96.0 0.015 5.1E-07 47.6 6.6 78 30-114 353-432 (443)
55 4aqs_A Laminin subunit beta-1; 82.3 3.2 0.00011 33.8 6.5 53 20-82 94-147 (525)
56 4aqt_A Laminin subunit gamma-1 60.9 11 0.00037 29.9 4.6 43 33-82 102-145 (375)
57 2y38_A Laminin subunit alpha-5 60.8 14 0.00048 29.6 5.3 44 32-82 107-152 (403)
58 3zyj_B Netrin-G1; cell adhesio 54.0 15 0.00051 29.7 4.4 57 19-82 116-176 (426)
59 3nng_A Uncharacterized protein 52.3 54 0.0019 22.5 6.5 74 32-106 61-141 (168)
60 3tbd_A Netrin-G2, laminet-2; l 51.6 18 0.00062 28.4 4.4 58 18-82 87-148 (338)
61 1jhj_A APC10; beta sandwich, j 49.9 64 0.0022 22.7 8.1 92 17-115 49-148 (171)
62 2crz_A Fibronectin type-III do 40.3 46 0.0016 20.0 4.3 36 61-96 39-74 (110)
63 4dxt_A SUN domain-containing p 35.6 21 0.0007 25.7 2.3 60 17-81 79-143 (198)
64 2z6o_A UFM1-conjugating enzyme 33.6 37 0.0013 24.2 3.3 26 95-121 94-125 (172)
65 1uw7_A NSP9; viral protein, re 29.1 70 0.0024 22.0 3.9 30 68-98 74-103 (143)
66 3ecq_A Protein SPR0328, endo-a 26.5 14 0.00047 34.4 0.0 49 18-69 1481-1529(1531)
67 1x4x_A Fibronectin type-III do 26.3 89 0.003 18.7 3.9 44 62-107 37-80 (106)
68 2a7l_A Hypothetical ubiquitin- 25.4 17 0.00058 24.5 0.3 16 104-120 98-113 (136)
69 2crm_A Fibronectin type-III do 25.3 1.1E+02 0.0038 18.5 4.3 35 62-96 49-84 (120)
70 3ee7_A Replicase polyprotein 1 25.1 89 0.003 20.9 3.8 30 68-98 44-73 (121)
71 3o12_A Uncharacterized protein 23.4 55 0.0019 23.6 2.8 18 65-83 158-175 (221)
72 1x3d_A Fibronectin type-III do 21.2 1.4E+02 0.0049 17.8 4.8 36 61-96 46-82 (118)
73 2db8_A Tripartite motif protei 21.1 97 0.0033 18.7 3.3 34 62-95 40-73 (110)
74 3mep_A Uncharacterized protein 20.7 68 0.0023 22.5 2.8 18 65-83 129-146 (198)
75 2ed9_A Netrin receptor DCC; tu 20.4 1.5E+02 0.0052 17.8 4.8 36 61-96 59-94 (124)
76 3lpw_A A77-A78 domain from tit 20.2 1.3E+02 0.0043 19.3 3.9 46 62-108 133-178 (197)
No 1
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=99.96 E-value=1.8e-30 Score=186.90 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=92.5
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|++||||.+++.++|||+.+ +..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|.+.
T Consensus 34 ~~p~~aRL~~~~~~~aW~a~~~---d~~qwLqVDLg~~~~VtgV~tqG~~~~~-~~~~v~~y~l~yS~Dg-~~W~~~~~~ 108 (159)
T 3hny_M 34 WSPSKARLHLQGRSNAWRPQVN---NPKEWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISSSQDG-HQWTLFFQN 108 (159)
T ss_dssp CCGGGCBTTCCSSSCSBCCSSC---STTCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECEET
T ss_pred cChhhhhhhcCCCCCccCCCCC---CCCCeEEcccCCcEEEEEEEeecCCCCC-ccceEEEEEEEEEECC-CcEEEEecC
Confidence 4689999998766789999998 8899999999999999999999986532 2589999999999999 999999875
Q ss_pred CCc----------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NGK----------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~~----------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
+.. .++.+.|.+|+.||||||+|+.|. +.|||
T Consensus 109 ~~~~vF~GN~d~~t~v~~~l~~pi~ARyvRi~P~~w~--~~i~l 150 (159)
T 3hny_M 109 GKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWV--HQIAL 150 (159)
T ss_dssp TEECCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CceEeeeccCCCCcEEEEECCCCcEEEEEEEEEEEeC--CccEE
Confidence 433 455688999999999999999974 67876
No 2
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=99.96 E-value=1.8e-29 Score=184.95 Aligned_cols=112 Identities=32% Similarity=0.483 Sum_probs=91.9
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCc-CceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDI-REFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~-~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
..|++|||+...++++|||+.+...+. +|||||||++++.|++|+|||+.+.+...+||++|+|+||.|| .+|+.|.+
T Consensus 44 ~~p~~aRL~~~~~~~aW~a~~~~~~d~~~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~Dg-~~W~~y~~ 122 (178)
T 2wuh_A 44 TAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG-TRWISWRN 122 (178)
T ss_dssp GSGGGCBTTCCSTTSSBCCSSCBBTTBCCCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESSS-SSCEECCC
T ss_pred cChhhheecCCCCCCeecCCcCCCCCCCCCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcCC-CcEEEEec
Confidence 457899999866678999987533245 8999999999999999999998753212489999999999999 99999998
Q ss_pred CCCcEE----------EEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNGKAE----------YTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~~~~----------~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.++.++ +++.|.+|+.||||||+|+.|.. +.|||
T Consensus 123 ~~~~kvF~GN~D~~t~v~~~l~~pi~ARyVRi~p~~w~~-~~i~l 166 (178)
T 2wuh_A 123 RHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVTDHS-MNVCM 166 (178)
T ss_dssp TTSCCCEECCSSSSSCEEEEEEEEEEEEEEEEEEECSSC-BCCCB
T ss_pred CCccccccccCCCCceEEEeCCCCeEEEEEEEEEEeecC-CCeEE
Confidence 665544 45889999999999999999652 24666
No 3
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=99.95 E-value=8.8e-29 Score=177.89 Aligned_cols=107 Identities=20% Similarity=0.287 Sum_probs=91.5
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|++|||+..+..++|||..+ +..|||||||++++.|++|+|||+...+ ..+||++|+|+||.|| .+|+.|.+.
T Consensus 32 ~~p~~aRL~~~~~~~~W~a~~~---~~~qwLqVDLg~~~~Vt~v~tqG~~~~~-~~~~v~~y~l~yS~Dg-~~W~~~~~~ 106 (160)
T 1czt_A 32 WEPFRARLNAQGRVNAWQAKAN---NNKQWLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHYSEQG-VEWKPYRLK 106 (160)
T ss_dssp CCGGGCBTTCCSSSCSEECSSC---STTCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECCCT
T ss_pred cCcccceecCCCCCCcccCCCC---CCCcEEEEeCCCcEEEEEEEEeCcCCCC-cccEEEEEEEEEECCC-CcEEEEEcC
Confidence 4689999998655689999998 8899999999999999999999986432 1479999999999999 999999875
Q ss_pred CC------------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NG------------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~------------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+ +.++++.|.+|+.||||||+|+.|. +.|||
T Consensus 107 ~~~~~~vF~GN~d~~t~v~~~l~~pi~ARyvRi~p~~w~--~~~~~ 150 (160)
T 1czt_A 107 SSMVDKIFEGNTNTKGHVKNFFNPPIISRFIRVIPKTWN--QSITL 150 (160)
T ss_dssp TCSSCCCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCEE
T ss_pred CCcccccccCcCCCCceEEEecCCCEEEEEEEEEEEEeC--CceEE
Confidence 32 2456688999999999999999964 67776
No 4
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=197.60 Aligned_cols=112 Identities=28% Similarity=0.418 Sum_probs=94.9
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
..|++||||...+.+||||+.+..++..|||||||++++.|++|+|||+...+...+||++|+|+||.|| .+|+.|++.
T Consensus 32 ~~p~~ARLn~~~~~gaW~a~~~~~~d~~qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~DG-~~W~~y~d~ 110 (351)
T 4ag4_A 32 TAARHSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDG-RRWMGWKDR 110 (351)
T ss_dssp GCGGGCBTTCCTTTSSBCCSSCCCSSCCCCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESSS-SCEEECCCT
T ss_pred cChhhhhcccCCCCccccccccccCCCCCEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeCC-CcEEEEECC
Confidence 4578999998767899999875334779999999999999999999998754222589999999999999 999999987
Q ss_pred CCcEEE----------EEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NGKAEY----------TEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~~~~~----------~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
++.++| ++.|.+|+.||||||+|+.| +.+.|||
T Consensus 111 ~~~kvF~GN~D~~t~v~n~l~~PI~ARyVRi~P~~w-~~~~i~L 153 (351)
T 4ag4_A 111 WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRAD-RVMSVCL 153 (351)
T ss_dssp TSCCCEECCSSSSCCEEEEEEEEEEEEEEEEEEECS-SSCCCCB
T ss_pred CccccccccCCCCceEEEeCCCCcEEEEEEEEEEEc-cCCceEE
Confidence 665554 68899999999999999996 3567776
No 5
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=99.95 E-value=4.8e-28 Score=182.74 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=90.7
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC-CcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-GQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~-~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|++||||.. .++|+|+.+ +..|||||||++++.|++|+|||+.+.+. ..+||++|+|+||.|| .+|+.|.+
T Consensus 32 ~~P~~ARLn~~--~~aW~a~~~---d~~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~DG-~~W~~y~~ 105 (218)
T 4deq_A 32 WSAERSRLNYP--ENGWTPGED---SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKE 105 (218)
T ss_dssp GCGGGCBTTCS--SCCBCCSSC---STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEE
T ss_pred CChhHeEEcCC--CCeECCCCC---CCCCeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeCC-CceEEeec
Confidence 46899999974 589999998 88999999999999999999999865421 1489999999999999 99999987
Q ss_pred CCCc----------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNGK----------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~~----------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.++. .++.|.|.+||.||||||+|+.|. +.|+|
T Consensus 106 ~~~~kvF~GN~D~~t~v~~~l~~Pi~ARyVRi~P~~w~--~~i~l 148 (218)
T 4deq_A 106 GNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWE--TGISM 148 (218)
T ss_dssp TTEECCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred ceeeecccCcCCCCceEEEeCCCCEEEEEEEEEeeeec--CCcEE
Confidence 5433 445789999999999999999964 56766
No 6
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=99.95 E-value=8e-28 Score=172.30 Aligned_cols=107 Identities=24% Similarity=0.357 Sum_probs=91.6
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|++|||+..+..++|||+.+ +..|||||||++++.|++|+|||+...+. .+||++|+|+||.|| .+|+.|.+.
T Consensus 33 ~~p~~arL~~~~~~~~W~~~~~---~~~qwlqVDLg~~~~vt~v~tqg~~~~~~-~~~v~~y~i~~S~Dg-~~W~~~~~~ 107 (158)
T 3bn6_A 33 WFPYYARLDNQGKFNAWTAQTN---SASEWLQIDLGSQKRVTGIITQGARDFGH-IQYVAAYRVAYGDDG-VTWTEYKDP 107 (158)
T ss_dssp CCGGGCBTTCCSSSCSEECSSC---CTTCCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECCCT
T ss_pred cChhheEEcCCCCCCcccCCCC---CCCCEEEEeCCCceEEEEEEeeCCCCCCC-CceEEEEEEEEECCC-CceEEEEcC
Confidence 5689999997645789999998 88999999999999999999999875431 379999999999999 999999875
Q ss_pred -C-----------CcEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 -N-----------GKAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 -~-----------~~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
. .+.++++.|.+|+.||||||+|+.|. +.|||
T Consensus 108 ~~~~~~~F~GN~d~~~~~~~~l~~pi~ARyVRi~p~~~~--~~~~l 151 (158)
T 3bn6_A 108 GASESKIFPGNMDNNSHKKNIFETPFQARFVRIQPVAWH--NRITL 151 (158)
T ss_dssp TCSSCCCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCEE
T ss_pred CCCceeeeeccCCCCeEEEEeCCCCEEEEEEEEEEEEcC--CeeEE
Confidence 2 23556788999999999999999965 67776
No 7
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=99.94 E-value=2.1e-27 Score=182.67 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=91.8
Q ss_pred ccCCceeeccCC--------CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCcc
Q psy6330 5 RVKAKRRLKVEQ--------AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLR 76 (123)
Q Consensus 5 ~~~~~aRLn~~~--------~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~ 76 (123)
+.|++||||... ..++|||+.+ +.+|||||||++++.|++|+|||+.+. .+||++|+|+||.|| .
T Consensus 28 ~~p~~aRLn~~~~~~~~~~~~~~~W~a~~~---d~~qwLqVDLg~~~~Vt~V~tQG~~~~---~~~vt~Y~l~yS~Dg-~ 100 (257)
T 2vm9_A 28 HGVKNSILNFSNSKDASRFDGSESWSSSVL---DKNQFIVAGSDSVKHFVAISTQGRGDH---DQWVTSYKLRYTLDN-V 100 (257)
T ss_dssp GSGGGCBTTCCCCCCTTSCCCCSSEECSSC---STTCCEEEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS-S
T ss_pred CCcCeEEeCCcccccccccCCCCeeeCCCC---CCCcEEeecCCCcEEEEEEEEeCCccC---CceEEEEEEEEEcCC-C
Confidence 568999999852 3589999998 889999999999999999999999754 589999999999999 9
Q ss_pred CcEEEecC-------CCcEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 77 DWKQYYGG-------NGKAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 77 ~W~~y~~~-------~~~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
+|..|.+. +.+.++.+.|.+|+.||||||+|+.|. |.+||
T Consensus 101 ~W~~y~~~~vF~GN~d~~t~v~~~l~~pi~ARyVRi~p~~w~--~~i~l 147 (257)
T 2vm9_A 101 NWVEYNNGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYN--NHISL 147 (257)
T ss_dssp CEEEGGGGCCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCEE
T ss_pred cEEEEcCCceecccCCCCceEEEeCCCCceEEEEEeeeeeec--CceEE
Confidence 99999863 445678899999999999999999965 56765
No 8
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=99.93 E-value=2.6e-26 Score=176.43 Aligned_cols=104 Identities=18% Similarity=0.336 Sum_probs=91.2
Q ss_pred cccCCceeeccCC-------CCCccccCCCCCCCcCceEEEecCC--cEEEEEEEecCcccCCCCcceEeEEEEEEEcCC
Q psy6330 4 LRVKAKRRLKVEQ-------AGGAWCPKNPVEKDIREFIQIDLGS--PHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPG 74 (123)
Q Consensus 4 ~~~~~~aRLn~~~-------~~~aW~p~~~~~~~~~qWLQVDLg~--~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg 74 (123)
-+.|++||||.+. ..++|||+.+ +.+||| ||++ ++.|++|+|||+.+. .+||++|+|+||.||
T Consensus 27 ~~~p~~aRLn~~~~~~~~~~~~~aW~a~~~---d~~qwL--DLg~~~~~~VtgV~tQG~~~~---~~~VtsY~l~yS~dg 98 (254)
T 2wn3_A 27 VHTQFNSALNYKNNGTNTIDGSEAWCSSIV---DTNQYI--VAGCEVPRTFMCVALQGRGDA---DQWVTSYKIRYSLDN 98 (254)
T ss_dssp TSSGGGCBTTCCCCTTCGGGCCSSEECSSC---STTCCE--EEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS
T ss_pred CCCcceEEeCCcccccccCCCCCeeeCCCC---CchheE--EcCCCeEEEEEEEEEeCCCCC---CCceEEEEEEEECCC
Confidence 3568999999852 3689999998 899999 9999 999999999999754 589999999999999
Q ss_pred ccCcEEEecC-------CCcEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 75 LRDWKQYYGG-------NGKAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 75 ~~~W~~y~~~-------~~~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+|..|.+. +.+.++.+.|.+|+.||||||+|+.|. +.|||
T Consensus 99 -~~W~~y~~~~vF~GN~d~~t~v~~~l~~pi~ARyvRi~P~~w~--~~i~l 146 (254)
T 2wn3_A 99 -VSWFEYRNGAAVTGVTDRNTVVNHFFDTPIRARSIAIHPLTWN--GHISL 146 (254)
T ss_dssp -SSCEEGGGGCCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCEE
T ss_pred -CcEEEecCCcEEeccCCCCeeEEEecCCCcEEEEEEEEEEEec--CccEE
Confidence 999999764 556778899999999999999999964 56776
No 9
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.93 E-value=6.9e-26 Score=190.04 Aligned_cols=106 Identities=23% Similarity=0.297 Sum_probs=90.8
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC-CcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-GQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~-~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|++||||.. ++||||+.+ +..|||||||++++.|++|+|||+...+. ..+||++|+|+||.|| .+|..|++
T Consensus 283 ~~p~~aRLn~~--~~aW~~~~~---~~~qwlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~dg-~~w~~y~~ 356 (577)
T 4gz9_A 283 WSVERSRLNYP--ENGWTPGED---SYKEWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWISLKE 356 (577)
T ss_dssp GCGGGCBTTCS--SCCBCCSSC---CTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECBS
T ss_pred CCcccccccCC--CCcccCCCC---CCCeEEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEcCC-CcEEEEec
Confidence 56899999974 589999998 99999999999999999999999854331 2469999999999999 99999998
Q ss_pred CCCcEE----------EEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNGKAE----------YTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~~~~----------~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.++.++ ++|.|.+|+.||||||+|+.|. +.|+|
T Consensus 357 ~~~~~vf~GN~d~~~~v~~~l~~pi~aryvRi~p~~~~--~~~~m 399 (577)
T 4gz9_A 357 GNKAIIFQGNTNPTDVVLGVFSKPLITRFVRIKPVSWE--TGISM 399 (577)
T ss_dssp SSSBCCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCCceEEeCCCCCCcEeEeecCCCcEEEEEEEEeEecc--ccEEE
Confidence 765554 4689999999999999999964 56665
No 10
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=169.24 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=88.9
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC-CcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-GQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~-~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|++|||+.. .++|||+.+ +..|||||||++++.|++|+|||+.+.+. ..+||++|+|+||.|| .+|..|.+
T Consensus 34 ~~p~~arl~~~--~~~W~~~~~---~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~ 107 (325)
T 2qqj_A 34 WTPQQSRLHGD--DNGWTPNLD---SNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRH 107 (325)
T ss_dssp SCGGGCBTTCS--SCCBCCSSC---STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEE
T ss_pred cCccceeecCC--CCccccCcC---CcCccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcCC-cEeEEeeC
Confidence 46899999974 589999998 88999999999999999999999864321 1479999999999999 99999987
Q ss_pred CCC----------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNG----------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~----------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
... +.++++.|.+|+.||||||+|+.|. +.+||
T Consensus 108 ~~~~~~f~Gn~d~~~~v~~~l~~pi~aRyvRi~p~~~~--~~~~~ 150 (325)
T 2qqj_A 108 GKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWH--SGIAL 150 (325)
T ss_dssp TTEECCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCccEEEeccCCCCeeEEEecCCceEEEEEeecCcccc--cccee
Confidence 532 3456788999999999999999965 34443
No 11
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=99.90 E-value=3.6e-24 Score=158.39 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=85.4
Q ss_pred ccCCceeeccCC-CCCccccC----CCCCCCcCceEEEecCCcEEEEEE-EecCcccCCCCcceEeEEEEEEEcCCccCc
Q psy6330 5 RVKAKRRLKVEQ-AGGAWCPK----NPVEKDIREFIQIDLGSPHVVTGV-QTQGRYDHGRGQEYTEEYILEYWRPGLRDW 78 (123)
Q Consensus 5 ~~~~~aRLn~~~-~~~aW~p~----~~~~~~~~qWLQVDLg~~~~ItgI-~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W 78 (123)
+.|..|||+... ..++|||. .. +.+|||||||++++.|++| +|||+...+. .+||++|+|+||.|| .+|
T Consensus 36 ~~p~~arL~dg~~~t~aW~a~~~~~~~---~~~qwLQVDLg~~~~VtgV~~tQG~~~~~~-~~~vt~Y~l~yS~DG-~~W 110 (192)
T 2w1s_A 36 YEGNEANLLDGDDNTGVWYKTLNGDTS---LAGEFIGLDLGKEIKLDGIRFVIGKNGGGS-SDKWNKFKLEYSLDN-ESW 110 (192)
T ss_dssp EEECGGGGSSSCTTCCEEEECHHHHCB---CTTCEEEEEEEEEEEEEEEEEEECCSSTTT-TCCCSEEEEEEESSS-SSC
T ss_pred cCChHHheeCCCCCcCEEeCCcccccC---CCCceEEEECCCeEEEEEEEEEcCCCCCCC-CCeEEEEEEEEEcCC-CCe
Confidence 467899999843 24599994 65 7899999999999999999 9999876421 479999999999999 999
Q ss_pred EEEecC--CCc----EEEEEcCCCceEeeeEEeeeee
Q psy6330 79 KQYYGG--NGK----AEYTEEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 79 ~~y~~~--~~~----~~~~~~l~~~~~~~~~R~~p~~ 109 (123)
+.|.+. .|+ .++.+.|.+|+.||||||.|+.
T Consensus 111 ~~~~~~~~~GN~d~~t~v~~~f~~pi~ARYVRi~p~~ 147 (192)
T 2w1s_A 111 TTIKEYDKTGAPAGKDVIEESFETPISAKYIRLTNME 147 (192)
T ss_dssp EEEEEEECTTCCSSCEEEEEEEEEEEEEEEEEEEECS
T ss_pred EEEecCCccCCcCCCcEEEEecCCCceEEEEEEEEee
Confidence 999875 344 7889999999999999999998
No 12
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.90 E-value=9.4e-24 Score=165.57 Aligned_cols=106 Identities=24% Similarity=0.330 Sum_probs=88.6
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-CCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-RGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|.+|||+.. .++|||+.+ +..|||||||++++.|++|+|||+...+ ...+||++|+|+||.|| .+|+.|.+
T Consensus 33 ~~p~~arl~~~--~~~W~~~~~---~~~qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~Dg-~~W~~~~~ 106 (318)
T 2qqi_A 33 WSAERSRLNYP--ENGWTPGED---SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKE 106 (318)
T ss_dssp GCGGGGBTTCS--SCCBCCSSC---CTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEE
T ss_pred CChhhhhhcCC--CCeEcCCCC---CCCceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecCC-CeEEEEeC
Confidence 46789999974 589999998 8899999999999999999999986531 11489999999999999 99999987
Q ss_pred CCC----------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNG----------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~----------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+. +.++++.|.+|+.||||||+|+.|. +.+||
T Consensus 107 ~~~~~~f~GN~d~~~~v~~~l~~pi~aRyVRi~p~~~~--~~~~l 149 (318)
T 2qqi_A 107 GNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWE--TGISM 149 (318)
T ss_dssp TTEECCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCeeEEEECCcCCCceeEeccCCCeeEEEEEEEEeecc--ceeEE
Confidence 532 3456788999999999999999965 44544
No 13
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.89 E-value=1.9e-23 Score=175.20 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=86.8
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|.+|||+.. ..+|++..+...+.+|||||||++++.|++|+|||+.+.+. .+||++|+|+||.|| .+|+.|.+.
T Consensus 439 ~~p~~aRL~~~--~~~w~~~~~~~~~~~qwLqVDLg~~~~VtgV~tQG~~~~~~-~~~vtsY~l~yS~Dg-~~W~~~~~~ 514 (577)
T 4gz9_A 439 WMPENIRLVTS--RTGWALPPSPHPYTNEWLQVDLGDEKIVRGVIIQGGKHREN-KVFMRKFKIAYSNNG-SDWKTIMDD 514 (577)
T ss_dssp CCGGGGBTTTC--SSCEEECCCSSCCCSCCEEEEEEEEEEEEEEEEECEESSSC-EECEEEEEEEEESSS-SSCEECBCT
T ss_pred cChhheeecCC--CCCcccccCCCCCCCceEEEECCCcEEEEEEEEeCCCCCCc-ceeEEEEEEEEECCC-CCeEEEEcC
Confidence 46789999874 46677765533467899999999999999999999876542 579999999999999 999999865
Q ss_pred CC------------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NG------------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~------------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+ +.++++.| +||.||||||+|+.| |.+.|+|
T Consensus 515 ~~~~~kvF~GN~d~~t~v~~~~-~Pi~ARyvRi~P~~~-~~~~i~l 558 (577)
T 4gz9_A 515 SKRKAKSFEGNNNYDTPELRTF-SPLSTRFIRIYPERA-THSGLGL 558 (577)
T ss_dssp TSSSBCCEECCSSSSCCEEEEE-EEEEEEEEEEEEEEE-BTTBEEE
T ss_pred CCCceEEeeCccCCCeeEEeec-CCEEEEEEEEEEEEe-cCCCEEE
Confidence 33 23456778 589999999999853 4667776
No 14
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=160.37 Aligned_cols=109 Identities=19% Similarity=0.351 Sum_probs=85.9
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-----CCcceEeEEEEEEEcCCccCcE
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-----RGQEYTEEYILEYWRPGLRDWK 79 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-----~~~~~V~sy~i~ys~dg~~~W~ 79 (123)
..|.+|||++. ..+|||......+..|||||||+.++.|++|+|||+.+.+ ...+||++|+|+||.|| .+|+
T Consensus 190 ~~p~~arL~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~dg-~~W~ 266 (325)
T 2qqj_A 190 WSPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWE 266 (325)
T ss_dssp CCGGGGBTTTC--SSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESSS-SSCE
T ss_pred cCcchhhhccC--CCccccccccCCCccceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeCC-CCeE
Confidence 35789999973 5789998421227789999999999999999999987310 12589999999999999 9999
Q ss_pred EEecCCCc------------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 80 QYYGGNGK------------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 80 ~y~~~~~~------------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.|.+..++ .++.+.|. |+.||||||+|+.|.. +.|||
T Consensus 267 ~~~~~~~~~~~vF~GN~d~~t~v~~~l~-pi~ARyVRi~p~~w~~-~~i~m 315 (325)
T 2qqj_A 267 YIQDPRTQQPKLFEGNMHYDTPDIRRFD-PIPAQYVRVYPERWSP-AGIGM 315 (325)
T ss_dssp ECEETTTTEECCEECCSSSSSCEEEEEE-EEEEEEEEEEEEEECT-TCCCB
T ss_pred EEecCCCCccceeecccCCCCeEEeecC-CEEEEEEEEEeeeeec-CCeEE
Confidence 99876442 33457784 8999999999999764 34766
No 15
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.88 E-value=5.2e-23 Score=161.32 Aligned_cols=108 Identities=20% Similarity=0.341 Sum_probs=86.2
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|.+|||++. .++||+......+..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|.+.
T Consensus 189 ~~p~~arl~~~--~~~W~~~~a~~~~~~qwLqVDLg~~~~Vt~V~tqg~~~~~-~~~~v~~Y~l~~S~dg-~~W~~~~~~ 264 (318)
T 2qqi_A 189 WMPENIRLVTS--RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDD 264 (318)
T ss_dssp CCGGGGBTTCC--CCSCSBCCCTTCCSCCCEEEEEEEEEEEEEEEEEECCCTT-CCCCCCCEEEEEESSS-SSCEECBCT
T ss_pred cCchhhhhccc--CCceeCcccccCCcCcEEEEeCCCceEEEEEEEcCccCCC-CCeEEEEEEEEEECCC-CCEEEEEcC
Confidence 46889999974 5789964211126789999999999999999999986532 1479999999999999 999999864
Q ss_pred C--------C----cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 N--------G----KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~--------~----~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
. | +.++.+.| +|+.||||||+|+.+ |.|.|||
T Consensus 265 ~~~~~~~F~GN~d~~t~~~~~~-~pi~ARyVRi~p~~~-~~~~i~l 308 (318)
T 2qqi_A 265 SKRKAKSFEGNNNYDTPELRTF-PALSTRFIRIYPERA-THGGLGL 308 (318)
T ss_dssp TSSSBCCBCCCSSSSCCEEEEE-EEEEEEEEEEEECCC-SSSCBCE
T ss_pred CCccccccccccCCCceEEeeC-CCEEEEEEEEEEEee-cCCCeEE
Confidence 2 2 24456778 899999999999974 5788877
No 16
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.88 E-value=9.5e-23 Score=165.90 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=86.4
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
..|.+|||+.. .++||+......+..|||||||++.+.|++|+|||+.... ..+||++|+|+||.|| .+|+.|.+.
T Consensus 321 ~~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~Y~i~~S~dg-~~W~~~~~~ 396 (450)
T 2qqm_A 321 WMPENIRLVTS--RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDD 396 (450)
T ss_dssp CCGGGGBTTTC--SSCEEECCCSSCCCSCCEEEEEEEEEEEEEEEEECCSCTT-TCCCEEEEEEEEESSS-SSCEECBCT
T ss_pred cCchhhhcccc--CCcccccccccCCcCceEEEeCCCcEEEEEEEecCccCCC-CcEEEEEEEEEEECCC-CcEEEEEcC
Confidence 45789999974 5789954211126789999999999999999999986532 2479999999999999 999999875
Q ss_pred CC------------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NG------------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~------------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+ +.++.+.| +|+.||||||+|+.| |.|.|||
T Consensus 397 ~~~~~~~F~GN~d~~~~~~~~~-~pi~aRyVRi~p~~~-~~~~i~l 440 (450)
T 2qqm_A 397 SKRKAKSFEGNNNYDTPELRTF-PALSTRFIRIYPERA-THGGLGL 440 (450)
T ss_dssp TSSSBCCEECCSSSSSCEEEEE-EEEEEEEEEEEEEEE-BTTBEEE
T ss_pred CCCcccEecCcCCCCceEEccC-CCeEEEEEEEEEeec-cCCCeEE
Confidence 32 23445777 899999999999986 6788887
No 17
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.88 E-value=3.6e-23 Score=175.04 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=91.6
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
..|.+|||+..+..++|||..+ +..|||||||++.+.|++|+|||+...+ ..+||++|+|+||.|| .+|+.|.+.
T Consensus 519 ~~p~~arL~~~g~~~~W~a~~~---~~~qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~l~~S~dg-~~W~~~~~~ 593 (647)
T 1sdd_B 519 WEPFLARLNAQGRVNAWQAKAN---NNNQWLQIDLLKIKKITAIVTQGCKSLS-SEMYVKSYTIHYSDQG-TDWKPYREK 593 (647)
T ss_dssp CCGGGCBSSCCSSSCSEECSSC---SSCCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEECEEEESSS-SCCEECCCS
T ss_pred cCccccccccCCCcccccCCCC---CCCcEEEEeCCCceEEEEEEeecCCCCC-CCcceEEEEEEEECCC-CcEEEEEcC
Confidence 3578999998655689999998 8899999999999999999999986432 1589999999999999 999999875
Q ss_pred CC------------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 NG------------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~~------------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+ +.++++.|.+|+.||||||+|+.| ++.|||
T Consensus 594 ~~~~~~~F~GN~d~~~~~~~~l~~pi~ARyvRi~p~~w--~~~i~~ 637 (647)
T 1sdd_B 594 SSMVDKIFEGNNNVRGHVKNFFNPPIISRFIRIIPKTW--NQSIAL 637 (647)
T ss_dssp SCSSCCCEECCSSSSCCEEEEEEEEEEEEEEEECCCEE--ESSCEE
T ss_pred CCcceeeeeccCCCCceEEEeCCCcEEEEEEEEEEEEc--CCCcEE
Confidence 43 245568899999999999999996 477876
No 18
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=165.47 Aligned_cols=108 Identities=19% Similarity=0.356 Sum_probs=85.5
Q ss_pred cCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-----CCcceEeEEEEEEEcCCccCcEE
Q psy6330 6 VKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-----RGQEYTEEYILEYWRPGLRDWKQ 80 (123)
Q Consensus 6 ~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-----~~~~~V~sy~i~ys~dg~~~W~~ 80 (123)
.|.+|||+.. .++|||......+..|||||||++++.|++|+|||+...+ ...+||++|+|+||.|| .+|+.
T Consensus 320 ~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~dg-~~W~~ 396 (460)
T 2qqo_A 320 SPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEY 396 (460)
T ss_dssp CGGGGBTTTC--SSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESSS-SSCEE
T ss_pred CcchhhhccC--CCCcccccccCCCccceEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeCC-CceEE
Confidence 5788999973 5789998422237789999999999999999999986311 12489999999999999 99999
Q ss_pred EecCCCc------------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 81 YYGGNGK------------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 81 y~~~~~~------------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
|.+..++ .++.+.|. |+.||||||+|+.|..+ .|+|
T Consensus 397 ~~~~~~~~~~vF~GN~d~~~~v~~~l~-pi~aRyvRi~p~~w~~~-~i~m 444 (460)
T 2qqo_A 397 IQDPRTQQPKLFEGNMHYDTPDIRRFD-PIPAQYVRVYPERWSPA-GIGM 444 (460)
T ss_dssp CEETTTTEECCEECCSSSSSCEEEEEE-EEEEEEEEEEEEEECTT-CCCB
T ss_pred EECCCCCccceeccccCCCceeeeeeC-ceEEEEEEEEeCeeecC-CeeE
Confidence 9876542 34467785 89999999999997643 3665
No 19
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.87 E-value=3e-23 Score=179.38 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=92.3
Q ss_pred cCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCC
Q psy6330 6 VKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGN 85 (123)
Q Consensus 6 ~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~ 85 (123)
.|.+|||+..+..++|||..+ +..|||||||++.+.|++|+|||+.+.. ..+||++|+|+||.|| .+|+.|.+.+
T Consensus 642 ~P~~ARL~~~~~~~aW~a~~~---d~~qwLQVDLg~~~~VtgV~tQG~~~~~-~~~~VtsY~l~yS~DG-~~W~~y~~~g 716 (770)
T 2r7e_B 642 SPSKARLHLQGRSNAWRPQVN---NPKEWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISSSQDG-HQWTLFFQNG 716 (770)
T ss_dssp CGGGCBTTCCSTTCSBCCSSC---CSSCCEEECCSSCCCBCCEEECCCCCTT-CCCCCCEEEECCBSST-TCBCCCBCSS
T ss_pred cccceeecCCCCCceEECCCC---CCCceEEEccccceEEEEEEEeCCcCcC-cccceEEEEEEEEcCC-CcEEEEecCC
Confidence 578999998766889999998 8899999999999999999999987532 2589999999999999 9999998654
Q ss_pred Cc----------EEEEEcCCCceEeeeEEeeeeeeCCCCccccC
Q psy6330 86 GK----------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVDS 119 (123)
Q Consensus 86 ~~----------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~~ 119 (123)
.. .++++.|.+|+.||||||+|+.| ++.|||.
T Consensus 717 ~~kvF~GN~D~~t~v~~~l~~pi~ARyVRi~p~~w--~~~i~mR 758 (770)
T 2r7e_B 717 KVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSW--VHQIALR 758 (770)
T ss_dssp SBCCEECCSCSSSCEEECCSSCCCCSBEEEEECSC--SSSCCBC
T ss_pred ceeecccCCCCCceEEEEcCCCEEEEEEEEEEEec--CCCeEEE
Confidence 33 45568999999999999999995 6788874
No 20
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.87 E-value=5.2e-22 Score=165.86 Aligned_cols=109 Identities=19% Similarity=0.348 Sum_probs=85.4
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-----CCcceEeEEEEEEEcCCccCcE
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-----RGQEYTEEYILEYWRPGLRDWK 79 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-----~~~~~V~sy~i~ys~dg~~~W~ 79 (123)
..|.+|||++. ..+|+|+.....+..|||||||++++.|++|+|||+.+.+ ...+||++|+|+||.|| .+|+
T Consensus 438 ~~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S~dg-~~W~ 514 (579)
T 2qqk_A 438 WSPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWE 514 (579)
T ss_dssp CCGGGGBTTTC--SSCBCCSSTTCCTTTCCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEESSS-SCCE
T ss_pred cCchhheeccc--CcCCcccccccCCccceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEEcCC-Ccee
Confidence 35788999973 5789997422237799999999999999999999986210 12589999999999999 9999
Q ss_pred EEecCCCc------------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 80 QYYGGNGK------------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 80 ~y~~~~~~------------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.|.+..+. .++++.|. |+.||||||+|+.|..+ .|+|
T Consensus 515 ~~~~~~~~~~~vf~GN~d~~t~~~~~l~-pi~aRyVRi~p~~w~~~-~i~m 563 (579)
T 2qqk_A 515 YIQDPRTQQPKLFEGNMHYDTPDIRRFD-PIPAQYVRVYPERWSPA-GIGM 563 (579)
T ss_dssp ECBCTTTSSBCCEECCSSSSSCEEEEEE-EEEEEEEEEEEEEEBTT-BCCB
T ss_pred EEEcCCCCceeeeeCccCCCCccccccC-ceEEEEEEEEcceeccC-CcEE
Confidence 99875432 34557786 89999999999997643 3665
No 21
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.86 E-value=5.2e-22 Score=165.89 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=88.9
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC-CcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-GQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~-~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
..|.+|||+.. .++|||+.+ +..|||||||+.++.|++|+|||+...+. ...||++|+|+||.|| .+|..|++
T Consensus 282 ~~p~~arl~~~--~~~W~~~~~---~~~qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~ 355 (579)
T 2qqk_A 282 WTPQQSRLHGD--DNGWTPNLD---SNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRH 355 (579)
T ss_dssp SCGGGCBTTCS--SCCBCCSSC---STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEE
T ss_pred cCcchhhccCC--CceecCCCC---CCCceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECCC-Cceeeeec
Confidence 45789999974 579999998 88999999999999999999999864321 1479999999999999 99999987
Q ss_pred CCC----------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNG----------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~----------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
... +.++.+.|.+|+.||||||+|+.|. +.++|
T Consensus 356 ~~~~~~f~GN~d~~~~v~~~l~~pi~aRyvRi~p~~~~--~~~~l 398 (579)
T 2qqk_A 356 GKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWH--SGIAL 398 (579)
T ss_dssp TTEECCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCcceEEcCCCCCCcEEEEeCCCCeeeEEEEEEEEEcC--CccEE
Confidence 543 3456788999999999999999975 45554
No 22
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=161.41 Aligned_cols=106 Identities=22% Similarity=0.326 Sum_probs=88.7
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-CCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-RGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
..|.+|||+.. ..+|||..+ +..|||||||+.++.|++|+|||+...+ ....||++|+|+||.|| .+|..|++
T Consensus 163 ~~p~~arl~~~--~~~W~~~~~---~~~~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~ 236 (460)
T 2qqo_A 163 WTPQQSRLHGD--DNGWTPNLD---SNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRH 236 (460)
T ss_dssp SCGGGCBTTCS--SCCBCCSSC---STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEE
T ss_pred cChhhhhhcCC--CceeeCCCC---CcceeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcCC-CCeeEecC
Confidence 45789999974 479999998 8899999999999999999999986532 11479999999999999 99999987
Q ss_pred CCC----------cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNG----------KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~----------~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
... ..++.+.|.+|+.||||||+|+.|. +.++|
T Consensus 237 ~~~~~~F~Gn~d~~~~v~~~l~~pi~aRyvRi~p~~~~--~~~~l 279 (460)
T 2qqo_A 237 GKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWH--SGIAL 279 (460)
T ss_dssp TTEECCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCccEEEecccCCCceEEEeCCCCeeeeEEEEEeeecc--CcceE
Confidence 542 3456788999999999999999975 44544
No 23
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.85 E-value=1.2e-21 Score=165.84 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=86.4
Q ss_pred ccCCceeeccCCCCCccccCCCCC-CCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~-~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|++|||++....++|||+.+.. .+..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|..|.+
T Consensus 355 ~~p~~arl~~~~~~~~W~~~~~~~~~~~~qwlqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~i~yS~Dg-~~W~~~~~ 432 (647)
T 1sdd_B 355 WEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGAKHYL-KPYYTTEFCVAYSLDR-KNWRIFKG 432 (647)
T ss_dssp CCGGGCBTTCCSSSCSEECSCCCCSSCCCSCEEEEEEEEEEEEEEEEECEESSS-SEEEEEEEEEEEESSS-SSCEECCS
T ss_pred cccceeeecCCCCcccccCCCCcccccccceEEeccCCeEEEEEEEEcCCCCCC-CccEEEEEEEEEEcCC-CceEEecc
Confidence 468899999865568999998721 02379999999999999999999986421 2589999999999999 99999986
Q ss_pred CCC------------cEEEEEcCCCceEeeeEEeeeeeeC
Q psy6330 84 GNG------------KAEYTEEYILEYWRPGLRDWKQYYG 111 (123)
Q Consensus 84 ~~~------------~~~~~~~l~~~~~~~~~R~~p~~~~ 111 (123)
..+ +.++.+.|.+|+.||||||.|+.|.
T Consensus 433 ~~~~~~~~f~gn~d~~~~v~~~l~~pi~aRyVRi~p~~~~ 472 (647)
T 1sdd_B 433 NSTRNVMYFGGNSDASTIKENQIDPPVVARYIRISPTGSY 472 (647)
T ss_dssp SCSSSSCCEECCSSSSSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred cCCCcceEecCCCCCCceeEEcCCCCEEEEEEEEEEEeec
Confidence 432 2456788999999999999999864
No 24
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.85 E-value=2.1e-21 Score=158.02 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=88.1
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCC-CCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHG-RGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~-~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+.|.+|||+.+ .++|+|+.+ +..|||||||++++.|++|+|||+.... ...+||++|+|+||.|| .+|..|.+
T Consensus 165 ~~p~~arl~~~--~~~W~~~~~---~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~ 238 (450)
T 2qqm_A 165 WSAERSRLNYP--ENGWTPGED---SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKE 238 (450)
T ss_dssp GCGGGGBTTCS--SCCBCCSSC---STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSEEECBS
T ss_pred chhhccccccC--CCCccCCCC---CCCceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCCC-CceeEEeC
Confidence 45789999974 578999998 8899999999999999999999986521 11479999999999999 99999987
Q ss_pred CCCc----------EEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 84 GNGK----------AEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 84 ~~~~----------~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
.+.. .++++.|.+|+.||||||.|+.|. +.++|
T Consensus 239 ~~~~~~F~GN~d~~~~v~~~l~~pi~aRyvRi~p~~w~--~~~~l 281 (450)
T 2qqm_A 239 GNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWE--TGISM 281 (450)
T ss_dssp SSSBCCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEE--SSCCB
T ss_pred CCeeeEeecccCCCcEEEEecCCceEEEEEEEEEeecc--CceeE
Confidence 5432 456788999999999999999965 44443
No 25
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.81 E-value=7.3e-21 Score=164.47 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=86.1
Q ss_pred ccCCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC
Q psy6330 5 RVKAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG 84 (123)
Q Consensus 5 ~~~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~ 84 (123)
+.|++|||+..+..++||+ + +..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|..|.+.
T Consensus 484 ~~p~~arL~~~~~~~aW~~--~---~~~qwLQVDLg~~~~Vt~V~tQG~~~~~-~~~~v~sY~I~yS~DG-~~W~~y~~~ 556 (770)
T 2r7e_B 484 WAPKLARLHYSGSINAWST--K---EPFSWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSLDG-KKWQTYRGN 556 (770)
T ss_dssp CCTTCCSSCCSTTCSSEEC--C---SSCCCEEEEEEEEEEECBCCCCCEECSS-SEECCSEEEEEEESSS-SSCBCCCCS
T ss_pred cchheEEECCCCCcccccc--C---CCCceEEecCCceEEEEEEEEcccCcCC-cccceEEEEEEEecCC-CccEEeecc
Confidence 4578999998655789998 3 5689999999999999999999986421 2589999999999999 999999754
Q ss_pred C--------C----cEEEEEcCCCceEeeeEEeeeeeeCCCCcccc
Q psy6330 85 N--------G----KAEYTEEYILEYWRPGLRDWKQYYGGNGKAVD 118 (123)
Q Consensus 85 ~--------~----~~~~~~~l~~~~~~~~~R~~p~~~~~~~~~~~ 118 (123)
. | +.++.+.|.+|+.||||||.|+.|. |.+||
T Consensus 557 ~~g~~~vF~GN~D~~tvv~~~l~~pi~ARyVRi~p~~~~--~~~~m 600 (770)
T 2r7e_B 557 STGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYS--IRSTL 600 (770)
T ss_dssp SSSSSCCCCCCSSTTCCCCCCCSSCEEEEEEEEEEEECS--SSCEE
T ss_pred cccceeeecCCCCCCceeEEeccCceeEeEEEEeccccc--cccee
Confidence 2 2 2356788999999999999999954 44544
No 26
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=99.54 E-value=2.5e-14 Score=98.20 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCceeeccCCC---CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEec
Q psy6330 7 KAKRRLKVEQA---GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 7 ~~~aRLn~~~~---~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~ 83 (123)
+..++|+.... .++||+.. ...+||||||++++.|++|.+|++.+.. ..|+++|+|.+|.|| .+ +.+..
T Consensus 28 ~~~~~~Dg~~~t~w~~~w~~~~----~~~~~l~vDLg~~~~i~~v~~~~~~~~~--~~~~~~~~i~~S~Dg-~~-~~v~~ 99 (143)
T 2v72_A 28 PASSAIDGNINTMWHTKWNGSD----ALPQSLSVNLGKARKVSSIAITPRTSGN--NGFITKYEIHAINNG-VE-TLVAE 99 (143)
T ss_dssp CGGGGSSSCTTCCEECCTTSCS----CSCEEEEEEEEEEEEEEEEEEECCSSCC--TTCEEEEEEEEEETT-EE-EEEEE
T ss_pred hHHhccCCCCCCceecCCCCCC----CCCEEEEEECCCCeEEeEEEEEecccCC--CCCEEEEEEEEEcCC-Cc-cEEeE
Confidence 34556664321 35677654 3579999999999999999999986532 479999999999999 66 66643
Q ss_pred C--CC-cEEEEEcCCCceEeeeEEeeeeeeC
Q psy6330 84 G--NG-KAEYTEEYILEYWRPGLRDWKQYYG 111 (123)
Q Consensus 84 ~--~~-~~~~~~~l~~~~~~~~~R~~p~~~~ 111 (123)
. ++ ..+....|.+|+.||||||.|..+.
T Consensus 100 g~~~~~~~~~~~~f~~p~~aRyvRi~~~~~~ 130 (143)
T 2v72_A 100 GTWEENNLVKTVTFDSPIDAEEIKITAIQGV 130 (143)
T ss_dssp EECCSSSSCEEEEEEEEEEEEEEEEEEEEEG
T ss_pred EEEcCCCceEEEEeCCCCcEEEEEEEEEEcC
Confidence 2 22 3455678889999999999999864
No 27
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=99.44 E-value=5.6e-13 Score=91.73 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=64.6
Q ss_pred CccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC--CCcE-EEEEcCC
Q psy6330 19 GAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG--NGKA-EYTEEYI 95 (123)
Q Consensus 19 ~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~--~~~~-~~~~~l~ 95 (123)
.+||+... +..+||||||++++.|++|.++++.+.. ..++++|+|.+|.|| .+|+.+.+. .++. .....|
T Consensus 42 s~~~~~~~---~~~~~l~iDLg~~~~i~~v~~~~~~~~~--~~~~~~~~i~~S~Dg-~~w~~v~~~~~~~~~~~~~~~~- 114 (150)
T 2j1a_A 42 SKWSSPAH---EGPHHLTLELDNVYEINKVKYAPRQDSK--NGRITGYKVSVSLDG-ENFTEVKTGTLEDNAAIKFIEF- 114 (150)
T ss_dssp CCCSSSCC---CSCCEEEEEEEEEEEEEEEEEECCSSCC--TTEEEEEEEEEESSS-SSEEEEEEEECCSSSSCEEEEE-
T ss_pred ccccCCCC---CCCeEEEEECCCCeEEeEEEEeecCCCC--CCCEEEEEEEEEcCC-CceEEEEEeeECCCCceEEEEE-
Confidence 35666544 6789999999999999999999876432 479999999999999 999987642 2221 222334
Q ss_pred CceEeeeEEeeeee
Q psy6330 96 LEYWRPGLRDWKQY 109 (123)
Q Consensus 96 ~~~~~~~~R~~p~~ 109 (123)
+|+.+|||||.+..
T Consensus 115 ~~~~aryvRi~~~~ 128 (150)
T 2j1a_A 115 DSVDAKYVRLDVTD 128 (150)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred CCeEEEEEEEEEEe
Confidence 38999999999985
No 28
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=99.41 E-value=6.9e-13 Score=91.41 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC--
Q psy6330 7 KAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG-- 84 (123)
Q Consensus 7 ~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~-- 84 (123)
+.++..++ ..+.|++.. + +||||||++++.|++|.++++.. ..++++|+|.+|.|| .+|..+.+.
T Consensus 26 ~~~a~Dg~--~~t~W~~~~----~--~~l~vDLg~~~~v~~v~i~~~~~----~~~~~~~~i~~S~Dg-~~w~~~~~~~~ 92 (145)
T 2jda_A 26 PANIADGD--VKTRWAASG----E--SWVQLELDKEQSIENILIVPFKP----TERKLKFSIFYSNDG-KNWQPLAEGLE 92 (145)
T ss_dssp GGGGGSSC--TTCCEEEES----S--EEEEEEEEEEEEEEEEEEEESST----TTCCEEEEEEEESSS-SSCEEEEEEEE
T ss_pred chhcccCC--CCCeECCCC----C--eeEEEECCCceEEEEEEEEeccC----CCceEEEEEEEeCCC-CceEEeeeCcc
Confidence 34444443 357899864 3 99999999999999999998732 369999999999999 999998763
Q ss_pred -CCc--EEEEEcCCCceEeeeEEeeeeeeCC
Q psy6330 85 -NGK--AEYTEEYILEYWRPGLRDWKQYYGG 112 (123)
Q Consensus 85 -~~~--~~~~~~l~~~~~~~~~R~~p~~~~~ 112 (123)
.++ ......| +|+.+|||||.+.....
T Consensus 93 ~~~~~~~~~~~~f-~~~~aryvRi~~~~~~~ 122 (145)
T 2jda_A 93 TSSADKNGEKLTF-TPVTAKYIKLDTFGTDV 122 (145)
T ss_dssp CCCSCSSCEEEEE-EEEEEEEEEEEEEEESS
T ss_pred ccCCCCccEEEEe-CcccEEEEEEEEECCCC
Confidence 221 2345567 89999999999987543
No 29
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=99.39 E-value=3.6e-12 Score=90.78 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=68.5
Q ss_pred CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC--CC-cEEEEEcC
Q psy6330 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG--NG-KAEYTEEY 94 (123)
Q Consensus 18 ~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~--~~-~~~~~~~l 94 (123)
...|.+.........+||+|||++++.|++|.++++.+.. ..++++|+|.+|.|| .+|+.+.+. .+ .......|
T Consensus 56 ~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~--~~~~~~y~I~~S~DG-~~W~~v~~g~~~~~~~~~~~~f 132 (161)
T 4a41_A 56 NTIWHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAK--NGNITKYELHVSEDG-NNFRKISEGNWDDSGSLKTLKF 132 (161)
T ss_dssp TCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEECCSSCC--TTCEEEEEEEEESSS-SCEEEEEEEECCSSSSCEEEEE
T ss_pred CCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEEecCCCC--CCcEEEEEEEEECCC-CceEEeeeeeecCCCcEEEEEe
Confidence 4568776431114579999999999999999999876532 479999999999999 999998642 11 12334456
Q ss_pred CCceEeeeEEeeeeeeC
Q psy6330 95 ILEYWRPGLRDWKQYYG 111 (123)
Q Consensus 95 ~~~~~~~~~R~~p~~~~ 111 (123)
. |+.||||||.+....
T Consensus 133 ~-~v~aRYVRi~~~~~~ 148 (161)
T 4a41_A 133 N-STKATHVKLVALEGV 148 (161)
T ss_dssp E-EEEEEEEEEEEEEEG
T ss_pred C-CceEEEEEEEEEEcc
Confidence 5 899999999998754
No 30
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=99.33 E-value=3.3e-12 Score=90.23 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=64.6
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEec-CcccCCCCcceEeEEEEEEEcCCccCcEEEecC----CCcEEEE
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQ-GRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG----NGKAEYT 91 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQ-G~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~----~~~~~~~ 91 (123)
..+.|++..+ ..+|+||||++++.|++|.+| ++ ++++.|+|++|.|| .+|+.+... +......
T Consensus 51 ~~T~W~s~~~----~~p~~~VDLg~~~~V~~v~i~~~r-------~~v~~y~I~~S~DG-~~W~~~~~~g~~~~~~~~~~ 118 (149)
T 4a42_A 51 ENTLWVPGQE----EEKSVTFDLSKEKDISAIDIVSKG-------NSPLKYSIEISNDG-TEWTKIVDENNNEENKAVYS 118 (149)
T ss_dssp TTSCBCCCSC----SSEEEEEEEEEEEECCEEEEEECS-------SSCCCEEEEEESSS-SSCEEEEEETTCCCCCSEEE
T ss_pred CCCEEEcCCC----CCCeEEEECCCcEEEEEEEEEcCC-------CCcEEEEEEEEcCC-CeEeEeEEcceeCCCCceEE
Confidence 3578998775 356669999999999999994 32 34999999999999 999986432 2234566
Q ss_pred EcCCCceEeeeEEeeeee
Q psy6330 92 EEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 92 ~~l~~~~~~~~~R~~p~~ 109 (123)
..|.+|+.||||||.+..
T Consensus 119 ~~f~~pv~aRYVRi~~~~ 136 (149)
T 4a42_A 119 NILKSGKIGRFVRFNFNS 136 (149)
T ss_dssp EECCTTCEEEEEEEEECS
T ss_pred EEcCCCceEEEEEEEEec
Confidence 789899999999999865
No 31
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=99.32 E-value=9.4e-12 Score=87.86 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=67.3
Q ss_pred CCccccCCCCC-CCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCC--Cc-EEEEEc
Q psy6330 18 GGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGN--GK-AEYTEE 93 (123)
Q Consensus 18 ~~aW~p~~~~~-~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~--~~-~~~~~~ 93 (123)
.+.|++..... ....+||+|||++++.|++|.++++.+.. ..++++|+|.+|.|| .+|+.+.+.. ++ ......
T Consensus 39 ~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~--~~~~~~~~I~~S~Dg-~~W~~v~~~~~~~~~~~~~~~ 115 (159)
T 3f2z_A 39 ETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGS--NNPIKVVRFEASEDG-TNWESIGQFGFTNQDAALKYY 115 (159)
T ss_dssp TCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SSCEEEEEEECCCCSSCEEEC
T ss_pred CCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEEEecCCCC--CCCeeEEEEEEEcCC-CCeEEeEEeecCCCCccEEEe
Confidence 56787764211 14578999999999999999999876433 478999999999999 9999986421 11 111223
Q ss_pred CCCceEeeeEEeeeeeeCC
Q psy6330 94 YILEYWRPGLRDWKQYYGG 112 (123)
Q Consensus 94 l~~~~~~~~~R~~p~~~~~ 112 (123)
| +|+.||||||.+.....
T Consensus 116 ~-~~~~aRYVRi~~~~~~~ 133 (159)
T 3f2z_A 116 V-KSSTARYIKLVIPDGVG 133 (159)
T ss_dssp C-CCEEEEEEEEEECSSSS
T ss_pred c-CCceEEEEEEEEEeccC
Confidence 4 68999999999987543
No 32
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=9.9e-12 Score=88.85 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=67.0
Q ss_pred CCccccCCCCC-CCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCC--CcEEEEEcC
Q psy6330 18 GGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGN--GKAEYTEEY 94 (123)
Q Consensus 18 ~~aW~p~~~~~-~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~--~~~~~~~~l 94 (123)
.+.|++..... ....+||+|||++++.|++|.++++.+.. ..++++|+|.+|.|| .+|+.+.+.. ++...+..+
T Consensus 49 ~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~I~~S~Dg-~~W~~v~~~~~~~~~~~~~~~ 125 (169)
T 3ggl_A 49 ETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGS--NNPIKVVEFAASEDN-VNWTPIGRFGFTNQDAALEYY 125 (169)
T ss_dssp SCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SCCEEEEEEECCCCSSCEEEC
T ss_pred CCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEEecCCCC--CCCeeEEEEEEeCCC-CCcEEeEEEEeccCCCcEEEE
Confidence 45677654210 14579999999999999999999876433 479999999999999 9999986421 111111123
Q ss_pred CCceEeeeEEeeeeeeCC
Q psy6330 95 ILEYWRPGLRDWKQYYGG 112 (123)
Q Consensus 95 ~~~~~~~~~R~~p~~~~~ 112 (123)
.+|+.||||||.+.....
T Consensus 126 f~~~~aRYVRi~~~~~~~ 143 (169)
T 3ggl_A 126 VKSIKARYIRLTIPDDGG 143 (169)
T ss_dssp CCCEEEEEEEEEECSSSS
T ss_pred ecCceEEEEEEEEEeCCC
Confidence 468999999999987543
No 33
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=99.15 E-value=8.1e-11 Score=103.31 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=67.7
Q ss_pred CCceeeccCCCCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCCC
Q psy6330 7 KAKRRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNG 86 (123)
Q Consensus 7 ~~~aRLn~~~~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~~ 86 (123)
|.+|+-++ ..+.|++. + ..||||||||+.+.|++|++||. ..++++|+|++|.|| .+|+.+.+..+
T Consensus 44 p~nAvDGn--~~T~WsS~-~----~~qWLqVDLG~~~~V~~V~l~~~------~~~v~~Y~Ie~S~DG-~~Wt~v~~~t~ 109 (914)
T 4a4a_A 44 ADLAIDGD--LSTYWESS-N----DYKWIEVDLGGIYELSKIEIFNK------DEAVYKYNIYASEDG-ENFNKIAYKNN 109 (914)
T ss_dssp GGGGSSSC--TTCCEECC-S----SCCEEEEEEEEEEEEEEEEEECS------SSSCEEEEEEEESSS-SCCEEEEEECS
T ss_pred HHHeECCC--CCCeEecC-C----CCceEEEECCCeEEEEEEEEEec------CCceEEEEEEEEcCC-CCeEEEEEccc
Confidence 44554443 36889998 3 35999999999999999999972 256889999999999 99999986543
Q ss_pred cEE-----EEEcCCCceEeeeEEeeeee
Q psy6330 87 KAE-----YTEEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 87 ~~~-----~~~~l~~~~~~~~~R~~p~~ 109 (123)
+.. -...| +|+.||||||....
T Consensus 110 ~~~~~~~~d~v~f-~pv~ARYVRL~~t~ 136 (914)
T 4a4a_A 110 DNVSDSNGNMHTI-DNVRAGKIRIDVVQ 136 (914)
T ss_dssp CCCCCTTCEEEEE-EEEEEEEEEEEEEE
T ss_pred CccCCCccceEEe-CCceEEEEEEEEEe
Confidence 221 23455 78999999999754
No 34
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.6e-10 Score=95.25 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=70.5
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCC-----CcEEEE
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGN-----GKAEYT 91 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~-----~~~~~~ 91 (123)
..+.|+|..+ +..+||||||+++.+|..|++|..... .++|++|+|++|.|| .+|+.+.+.. |.+ -.
T Consensus 353 ~~TyW~a~~~---~~~~wl~vDLg~~~~vn~V~lqe~i~~---gqrv~~y~Ve~s~DG-~~W~~v~~gt~~~tiG~k-r~ 424 (469)
T 3eyp_A 353 KNTYFAGKDG---EVKADIIFTLPKTIEFDCLMIEEVIEL---GHRTTKWSVEYTVDG-KNWITIPEATDKQAIGHK-WI 424 (469)
T ss_dssp SSCCEECCTT---CCCEEEEEEEEEEEEEEEEEEEECGGG---CSCEEEEEEEEESSS-SCCEECGGGSSBCCCTTC-EE
T ss_pred CCceEeCCCC---CCCcEEEEECCCCcEEeEEEEeecccC---CCCeEEEEEEEEcCC-CceEEEEecccccCCCce-eE
Confidence 4688999998 789999999999999999999976543 379999999999999 9999987654 221 22
Q ss_pred EcCCCceEeeeEEeeeeeeCC
Q psy6330 92 EEYILEYWRPGLRDWKQYYGG 112 (123)
Q Consensus 92 ~~l~~~~~~~~~R~~p~~~~~ 112 (123)
..| +|+.||||||.......
T Consensus 425 ~~f-~~v~aryVRl~i~~~~g 444 (469)
T 3eyp_A 425 VRL-APVKAKQVRLRIQDGKA 444 (469)
T ss_dssp EEE-EEEEEEEEEEEEEEESS
T ss_pred Eec-CCeeEEEEEEEEEcCCC
Confidence 334 38999999999877543
No 35
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=99.07 E-value=2.4e-10 Score=98.47 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=62.4
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC--CC-cEEEEEcCCCceEeeeEEee
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG--NG-KAEYTEEYILEYWRPGLRDW 106 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~--~~-~~~~~~~l~~~~~~~~~R~~ 106 (123)
+..+||||||++.+.|++|.+|++.+.. ..+|++|+|.+|.|| .+|+.+.+. .+ .......|. |+.+|||||.
T Consensus 637 ~~p~wl~VDLg~~~~V~~V~i~~r~~~~--~g~v~~y~I~~S~DG-~~W~~v~~gt~~~~~~~~~v~f~-~v~ARYVRi~ 712 (737)
T 2v5d_A 637 EGPHHLTLELDNVYEINKVKYAPRQDSK--NGRITGYKVSVSLDG-ENFTEVKTGTLEDNAAIKFIEFD-SVDAKYVRLD 712 (737)
T ss_dssp CCCCEEEEEEEEEEEEEEEEEECCSSCC--TTEEEEEEEEEESSS-SCCCCSEEEECCSSSSCEEEEEE-EEEEEEEEEE
T ss_pred CCCeEEEEECCCcEEEEEEEEEeccCCC--CCceEEEEEEEEcCC-CceEEEEeeeecCCCceEEEEeC-CceEEEEEEE
Confidence 5689999999999999999999886532 479999999999999 999887642 11 123344564 8999999999
Q ss_pred eeeeC
Q psy6330 107 KQYYG 111 (123)
Q Consensus 107 p~~~~ 111 (123)
+....
T Consensus 713 ~~~~~ 717 (737)
T 2v5d_A 713 VTDSV 717 (737)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 98754
No 36
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=99.02 E-value=5.3e-10 Score=80.16 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=64.3
Q ss_pred CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCCCcEE---EEEcC
Q psy6330 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAE---YTEEY 94 (123)
Q Consensus 18 ~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~~~~~---~~~~l 94 (123)
.+.|++... +..|||||||+++..|.+|.+.=... ...+.|+|+.|.|| .+|+.+.+..++.. ....|
T Consensus 55 ~T~W~s~~~---~~~~Wi~VDLg~~~~v~~v~i~~~~~-----~~~~~y~IevS~Dg-~~W~~v~~~t~~~~~~~~~~~~ 125 (161)
T 4a3z_A 55 SSLWISDNG---AMPANATIDLEGNNFVDFLELHFEKE-----GFRFQFKVEVEDES-GNRETVLDMTSNTEDNKKSYNI 125 (161)
T ss_dssp TCCEEBGGG---CSSEEEEEEEEEEEEEEEEEEECSST-----TCCEEEEEEEECTT-CCEEEEEECTTCCSCCCSEEEE
T ss_pred CCeEEcCCC---CCCeEEEEECCCcEEEeEEEEEECCC-----CceEEEEEEEEcCC-CCEEEEEEecCCCCCccEEEEc
Confidence 577998776 67899999999999999999864321 34578999999999 99999876544321 12356
Q ss_pred CCceEeeeEEeeeeee
Q psy6330 95 ILEYWRPGLRDWKQYY 110 (123)
Q Consensus 95 ~~~~~~~~~R~~p~~~ 110 (123)
..+..+|||||.-.--
T Consensus 126 ~~~~~aRYVRv~~~~~ 141 (161)
T 4a3z_A 126 PVKKEISKIHATITGK 141 (161)
T ss_dssp EEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEec
Confidence 5689999999976543
No 37
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=98.96 E-value=6.4e-11 Score=106.55 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred CccccCCCCCCCc-CceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEc-CCccCcEEEecC--CCc-EEEEEc
Q psy6330 19 GAWCPKNPVEKDI-REFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWR-PGLRDWKQYYGG--NGK-AEYTEE 93 (123)
Q Consensus 19 ~aW~p~~~~~~~~-~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~-dg~~~W~~y~~~--~~~-~~~~~~ 93 (123)
++|++... .. ++||||||++++.|++|++|++.+......+|++|+|.+|. || .+|+.+.+. .++ ......
T Consensus 1260 SaWs~ss~---~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~dDG-~nWttVa~GTFsgn~t~kti~ 1335 (1376)
T 2zxq_A 1260 TSWSENAV---GNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADG-TTKDVVTDAEFSTTTMWQKAS 1335 (1376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccCC---CCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECCCC-CeEEEEEeeEEcCCCceEEEE
Confidence 45665443 33 49999999999999999999986510125799999999999 89 999998652 222 356688
Q ss_pred CCCceEeeeEEeeeeeeCCC
Q psy6330 94 YILEYWRPGLRDWKQYYGGN 113 (123)
Q Consensus 94 l~~~~~~~~~R~~p~~~~~~ 113 (123)
|.+|+.||||||.+..+...
T Consensus 1336 Fd~PVkARYVRf~ats~~gg 1355 (1376)
T 2zxq_A 1336 FDAVENVTAVRLTVLSSAGQ 1355 (1376)
T ss_dssp --------------------
T ss_pred eCCCceEEEEEEEEEEccCC
Confidence 99999999999999986553
No 38
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.84 E-value=8.5e-09 Score=86.19 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=65.6
Q ss_pred CCccccCCCC--CCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCc-EEEecC--CCc-EEEE
Q psy6330 18 GGAWCPKNPV--EKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDW-KQYYGG--NGK-AEYT 91 (123)
Q Consensus 18 ~~aW~p~~~~--~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W-~~y~~~--~~~-~~~~ 91 (123)
.+.|++..+. .....+||||||++.+.|++|.++.+.... ...++++|+|.+|.|| .+| +.+.+. ..+ ....
T Consensus 53 ~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~-~~~~~~~y~i~~S~Dg-~~w~~~v~~~~~~~~~~~~~ 130 (656)
T 1k3i_A 53 DTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGN-QNGWIGRHEVYLSSDG-TNWGSPVASGSWFADSTTKY 130 (656)
T ss_dssp TCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEECCCSSC-CTTCBCEEEEEEESSS-SCCCSCSEEEECCSSSSCEE
T ss_pred CCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEecccCC-CCCCeeEEEEEEECCC-CCcceeeeeeeecCCCccee
Confidence 4679887651 012679999999999999999999875432 1469999999999999 999 544321 111 1223
Q ss_pred EcCCCceEeeeEEeeeeee
Q psy6330 92 EEYILEYWRPGLRDWKQYY 110 (123)
Q Consensus 92 ~~l~~~~~~~~~R~~p~~~ 110 (123)
..| +|+.+|||||.+..-
T Consensus 131 ~~~-~~~~aRyvRi~~~~~ 148 (656)
T 1k3i_A 131 SNF-ETRPARYVRLVAITE 148 (656)
T ss_dssp EEE-EEEEEEEEEEEECSB
T ss_pred eec-CCcceEEEEEEEecc
Confidence 345 489999999998874
No 39
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=98.82 E-value=1.8e-08 Score=70.94 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=62.1
Q ss_pred CCcccc-----CCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEc-CCccCcEEEec-C-CCcEE
Q psy6330 18 GGAWCP-----KNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWR-PGLRDWKQYYG-G-NGKAE 89 (123)
Q Consensus 18 ~~aW~p-----~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~-dg~~~W~~y~~-~-~~~~~ 89 (123)
.+.|.+ ... +..+|++||||+.+.|..|.+..+.+.. -...++.|+|..+. || .+|..... . ++...
T Consensus 38 ~t~W~~~~ct~t~~---~~~~W~~VDLg~~~~v~~V~i~~~~d~~-~~~r~~~~~I~vs~~dg-~~w~~~~~~~~~~~~~ 112 (153)
T 3lei_A 38 DSDYGHHSVTHTNF---EDNAWWQVDLGKTENVGKVKLYNRGDGN-VANRLSNFDVVLLNEAK-QEVARQHFDSLNGKAE 112 (153)
T ss_dssp CCCGGGTCSCCCCS---BTTCEEEEEEEEEEEEEEEEEEECCSTT-CGGGSCSEEEEEECTTC-CEEEEEEESCCTTCSE
T ss_pred CCccccCccccCCC---CCCCeEEEECCCceEEeEEEEEeCCCCc-ccccceeEEEEEECCCC-CccccceeecCCCCCe
Confidence 466876 233 6789999999999999999997664421 03577899998885 67 78987532 2 23334
Q ss_pred EEEcCCCceEeeeEEeeeee
Q psy6330 90 YTEEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 90 ~~~~l~~~~~~~~~R~~p~~ 109 (123)
+...| +|+.+|||||.-..
T Consensus 113 ~~~~~-~~~~~RYVri~~~~ 131 (153)
T 3lei_A 113 LEVFF-TAKDARYVKVELKT 131 (153)
T ss_dssp EEEEE-EEEEEEEEEEEECS
T ss_pred EEEEe-CCeEEEEEEEEeeC
Confidence 45555 68999999998754
No 40
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=98.81 E-value=2.1e-08 Score=82.90 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecC--CCcEEEEEcC
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGG--NGKAEYTEEY 94 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~--~~~~~~~~~l 94 (123)
..+.|+|..+ +..+||+|||+++.+|..|.+|..... .+.|++|+|+++.|| ..|+.+.+. .|.+ -...|
T Consensus 378 ~~TyW~a~~~---~~~~~l~idLg~~~~~n~v~IqE~i~~---gqRV~~y~Ve~~~dg-g~W~~va~gttiG~k-ri~~f 449 (478)
T 3ues_A 378 RDTFWRPDAD---DAAPAITLTLPQPTTINAIVIEEAIEH---GQRIEHLRVTGALPD-GTERVLGQAGTVGYR-RILRF 449 (478)
T ss_dssp TTCCBCCCTT---CSSCEEEEEEEEEEEEEEEEEEECGGG---CCCEEEEEEEEECTT-SCEEEEEEESCCTTC-EEEEE
T ss_pred CCceEeCCCC---CCCeeEEEECCCCcEEEEEEEeecccC---CCceEEEEEEEEeCC-CCEEEEEeccccCce-EEEEe
Confidence 4688999998 788999999999999999999965443 378999999999998 899998763 2322 22345
Q ss_pred CCceEeeeEEeeeeeeCC
Q psy6330 95 ILEYWRPGLRDWKQYYGG 112 (123)
Q Consensus 95 ~~~~~~~~~R~~p~~~~~ 112 (123)
+|+.||+||+.......
T Consensus 450 -~~v~ar~VRl~I~~s~~ 466 (478)
T 3ues_A 450 -DDVEVSSVTLHVDGSRL 466 (478)
T ss_dssp -EEEEEEEEEEEEEEESS
T ss_pred -CCeeeEEEEEEEeccCC
Confidence 49999999999876443
No 41
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=98.78 E-value=2.7e-08 Score=82.35 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCccccCCCCC--CCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEE-EecC--CCc-EEEE
Q psy6330 18 GGAWCPKNPVE--KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQ-YYGG--NGK-AEYT 91 (123)
Q Consensus 18 ~~aW~p~~~~~--~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~-y~~~--~~~-~~~~ 91 (123)
...|+...... ....+||+|||++++.|.+|.++.+.+.. ..+++.|+|.+|.|| .+|+. +... .++ ....
T Consensus 489 ~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~i~~S~Dg-~~w~~~v~~~~~~~~~~~~~ 565 (601)
T 1w8o_A 489 STFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSA--NEQVADYEIYTSLNG-TTWDGPVASGRFTTSLAPQR 565 (601)
T ss_dssp TCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEEECSSCS--TTCBCEEEEEEESSS-SSCEEEEEEEECCSCSSCEE
T ss_pred CCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEecCCCCC--CCceEEEEEEEECCC-CccceeeeeEEEcCCCceEE
Confidence 45677665411 01479999999999999999999765432 469999999999999 99996 6531 111 1223
Q ss_pred EcCCCceEeeeEEeeeeeeC
Q psy6330 92 EEYILEYWRPGLRDWKQYYG 111 (123)
Q Consensus 92 ~~l~~~~~~~~~R~~p~~~~ 111 (123)
..|. |+.+|||||.+..+.
T Consensus 566 ~~f~-~~~aRyvRi~~~~~~ 584 (601)
T 1w8o_A 566 AVFP-ARDARYIRLVALSEQ 584 (601)
T ss_dssp EEEE-EEEEEEEEEEECCBT
T ss_pred EEeC-CcceEEEEEEEEEcC
Confidence 4554 899999999998764
No 42
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=2.4e-07 Score=67.02 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=63.5
Q ss_pred CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC--CcceEeEEEEEEEcCCccCcEEEecCCC----cEEEE
Q psy6330 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR--GQEYTEEYILEYWRPGLRDWKQYYGGNG----KAEYT 91 (123)
Q Consensus 18 ~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~--~~~~V~sy~i~ys~dg~~~W~~y~~~~~----~~~~~ 91 (123)
.+.|...-.......+||+|||+++.+|++|...-+.+... ....++.|+|..|.|| .+|+.+.+... +..+.
T Consensus 50 ~T~Wht~w~~~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~Dg-~~W~~v~~~~~~~~~~~~~~ 128 (172)
T 3hnm_A 50 GTQWLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASIDN-ENWVKLKDWTSPKIGEPNVN 128 (172)
T ss_dssp TSCEECCCSSCCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESSS-SCEEEEECCBCSSTTCSCEE
T ss_pred CCeEEecCCCCCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeCC-CCeEEeEEEEecCCCCceEE
Confidence 46676621100156799999999999999999987754310 1368999999999999 99999876421 12221
Q ss_pred EcCCCceEeeeEEeeeee
Q psy6330 92 EEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 92 ~~l~~~~~~~~~R~~p~~ 109 (123)
.+.+|..||||||.-..
T Consensus 129 -~~~~~~~aRYIR~~v~~ 145 (172)
T 3hnm_A 129 -MDVPATQARYIRFVITD 145 (172)
T ss_dssp -EEEEEEEEEEEEEEEEE
T ss_pred -eecCCCceEEEEEEEcc
Confidence 22368899999997654
No 43
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=98.57 E-value=1.5e-07 Score=66.74 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEE-EcCCccCcEEEe-cC-CCcEEEEEcCCCceEeeeEEee
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY-WRPGLRDWKQYY-GG-NGKAEYTEEYILEYWRPGLRDW 106 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~y-s~dg~~~W~~y~-~~-~~~~~~~~~l~~~~~~~~~R~~ 106 (123)
+..+|++||||+.+.|.+|.+.-+.+.. ....++.|.|.. +.|| .+|.... .. .........| +++.+|||||.
T Consensus 52 ~~~~W~~VDLg~~~~v~~V~i~nr~d~~-~~~r~~~~~I~v~s~dg-~~w~~~~~~~~~~~~~~~i~~-~~~~gRYVrv~ 128 (153)
T 4gwi_A 52 EDNAWWQVDLGKTENVGKVKLYNRGDGN-VANRLSNFDVVLLNEAK-QEVARQHFDSLNGKAELEVFF-TAKDARYVKVE 128 (153)
T ss_dssp BTTCEEEEEEEEEEEEEEEEEEECCSTT-CGGGSCSEEEEEECTTS-CEEEEEEESCCTTCSEEEEEE-EEEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEEEEEcccCCc-hhhcccceEEEEECCCC-CeeeeeEEecCCCCCEEEEEe-CCceEEEEEEE
Confidence 6689999999999999999998654321 025788999965 5688 8998753 22 2223444456 57999999998
Q ss_pred ee
Q psy6330 107 KQ 108 (123)
Q Consensus 107 p~ 108 (123)
-.
T Consensus 129 ~~ 130 (153)
T 4gwi_A 129 LK 130 (153)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 44
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=98.42 E-value=7e-07 Score=62.86 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=52.0
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEE--cCCccCcEEE-ecCCCcEEEEEcCCCceEeeeEEee
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYW--RPGLRDWKQY-YGGNGKAEYTEEYILEYWRPGLRDW 106 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys--~dg~~~W~~y-~~~~~~~~~~~~l~~~~~~~~~R~~ 106 (123)
+..+|+|||||+.+.|..|.+.-+.+.. .+....|.|..+ .|+ ..|... ....+. .+...+ +++.+|||||.
T Consensus 55 ~~~~Ww~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~vg~s~d~-~~~~~~~~~~~~~-~~~~~~-~~~~gRYVrv~ 129 (148)
T 2j22_A 55 DSPSWWEIDLAQTEELEKLIIYNRTDAE--IQRLSNFDIIIYDSNDY-EVFTQHIDSLESN-NLSIDL-KGLKGKKVRIS 129 (148)
T ss_dssp CTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSEEEEEEEECTTSC-EEEEEEEEECSSS-EEEEEE-EEEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEeeEEEEEecCCCc--ccccCCEEEEEEeCCCC-CcccceecCCCCC-EEEEEe-CCeeEEEEEEE
Confidence 6689999999999999999997543322 356778888775 455 667643 233333 344444 67899999998
Q ss_pred ee
Q psy6330 107 KQ 108 (123)
Q Consensus 107 p~ 108 (123)
-.
T Consensus 130 ~~ 131 (148)
T 2j22_A 130 LR 131 (148)
T ss_dssp ES
T ss_pred EE
Confidence 53
No 45
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=98.37 E-value=1e-06 Score=67.64 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=59.5
Q ss_pred CCccccC----CCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCC----ccCcEEEecC--CCc
Q psy6330 18 GGAWCPK----NPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPG----LRDWKQYYGG--NGK 87 (123)
Q Consensus 18 ~~aW~p~----~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg----~~~W~~y~~~--~~~ 87 (123)
.+.|.+. .. .+..+|+|||||+.+.|.+|.++-+ +.. ..+++.|+|..+.+. ..+|...... ...
T Consensus 180 ~t~W~~~~c~~t~--~~~~~W~~VDLg~~~~v~~V~i~~~-d~~--~~~~~~~~i~vs~s~~~~~~~n~~~~~~~~~~~~ 254 (293)
T 3cqo_A 180 ANNWEMASCTHTK--NTMDPWWRMDLSQTHRVFSVKVTNR-DSF--EKRINGAEIRIGDSLDNNGNHNPRCAVITSIPAG 254 (293)
T ss_dssp CCSGGGTCCCCCC--SEESCEEEEEEEEEEEEEEEEEECC-SSS--GGGGTTEEEEEESCCGGGGTTSCEEEEECCCCTT
T ss_pred CCccccCccccCC--CCCCCEEEEECCCeEEEeEEEEEcc-Ccc--ccccCCeEEEEeccCccccccCceeeeecccCCC
Confidence 4567663 33 1458999999999999999999987 432 468899999997543 1578754321 222
Q ss_pred EEEEEcCCCceEeeeEEeeee
Q psy6330 88 AEYTEEYILEYWRPGLRDWKQ 108 (123)
Q Consensus 88 ~~~~~~l~~~~~~~~~R~~p~ 108 (123)
..+...+ +|+.+|||||.-.
T Consensus 255 ~~~~~~~-~~~~~RYVrv~~~ 274 (293)
T 3cqo_A 255 ASTEFQC-NGMDGRYVNIVIP 274 (293)
T ss_dssp CEEEEEE-EEEEEEEEEEECT
T ss_pred CEEEEEc-CCeeEEEEEEEec
Confidence 3444444 6799999999854
No 46
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=98.34 E-value=1.7e-06 Score=60.93 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=53.2
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEe----cCCCcEEEEEcCCCceEeeeEEe
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYY----GGNGKAEYTEEYILEYWRPGLRD 105 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~----~~~~~~~~~~~l~~~~~~~~~R~ 105 (123)
+..+|+|||||+.+.|..|.+.-+.+.. .+.++.|.|..+.++ . |..+. ..++. .+...| +++.+|||||
T Consensus 58 ~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~v~~~~-~-~~~~~~~~~~~~g~-~~~~~~-~~~~gRYVrv 131 (151)
T 2j1v_A 58 DNPSWWEVDLKKMDKVGLVKIYNRTDAE--TQRLSNFDVILYDNN-R-NEVAKKHVNNLSGE-SVSLDF-KEKGARYIKV 131 (151)
T ss_dssp CTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSCSEEEEEECTT-C-CEEEEEEECCCSSS-EEEEEE-EEEEEEEEEE
T ss_pred CCCCEEEEECCCCeEcCEEEEEcCCCcc--ccccCCEEEEEECCC-C-CceEeeEEcCCCCC-EEEEec-CCeeEEEEEE
Confidence 5689999999999999999997553321 367789999999887 4 54442 22333 344445 7899999999
Q ss_pred eee
Q psy6330 106 WKQ 108 (123)
Q Consensus 106 ~p~ 108 (123)
.-.
T Consensus 132 ~~~ 134 (151)
T 2j1v_A 132 KLL 134 (151)
T ss_dssp EES
T ss_pred EEE
Confidence 853
No 47
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=98.33 E-value=1e-06 Score=62.31 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=52.4
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccC--c-EEEe----c-CCCcEEEEEcCCCceEee
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD--W-KQYY----G-GNGKAEYTEEYILEYWRP 101 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~--W-~~y~----~-~~~~~~~~~~l~~~~~~~ 101 (123)
+..||++||||+.+.|.+|.+.-+.+.. ......|.|..+.++ .. | .... . ..| ..+...|.+|+.+|
T Consensus 56 ~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~i~v~~s~-~~~~~~n~~~~~~~~~~~g-~~~~i~~~~~~~gR 131 (158)
T 1k12_A 56 QANPWWRVDLLQVYTITSVTITNRGDCC--GERISGAEINIGQHL-ASNGVNNPECSVIGSMATG-ETKTFHCPAPMIGR 131 (158)
T ss_dssp CSSCEEEEEEEEEEEEEEEEEEECSSSC--TTTTTTCEEEEESSC-TTTTTTSCEEEECCCCCTT-CEEEEEEEEEEEEE
T ss_pred CCCCEEEEECCCceEEeEEEEEeCCCcC--ccccCCEEEEEEcCC-ccccccCceeeeecccCCC-CEEEEECCCCCeeE
Confidence 6789999999999999999997543321 245677888888765 33 5 2221 1 123 34555666889999
Q ss_pred eEEeeee
Q psy6330 102 GLRDWKQ 108 (123)
Q Consensus 102 ~~R~~p~ 108 (123)
||||.-.
T Consensus 132 YVrv~~~ 138 (158)
T 1k12_A 132 YVVTYLP 138 (158)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 9999853
No 48
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=98.26 E-value=4.3e-06 Score=64.09 Aligned_cols=78 Identities=12% Similarity=-0.055 Sum_probs=53.3
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCc-c---CcEEEe--cCCCcEEEEEcCCCceEeeeE
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGL-R---DWKQYY--GGNGKAEYTEEYILEYWRPGL 103 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~-~---~W~~y~--~~~~~~~~~~~l~~~~~~~~~ 103 (123)
+..||+||||++.+.|.+|.++.+.+.. .+.+..|.|..+.+.. . +|.... ..+........|.+|+.+|||
T Consensus 48 ~~~~W~~VDLg~~~~v~~V~i~~r~d~~--~~~~~~~~i~v~~s~d~~~~~n~~~~~~~~~~~g~~~~~~~~~~~~gRYV 125 (293)
T 3cqo_A 48 QTNPWWRVDLLEPYIVTSITITNRGDCC--PERLNGVEIHIGNSLQENGVANPRVGVISHIPAGISHTISFTERVEGRYV 125 (293)
T ss_dssp BSSCEEEEEEEEEEEEEEEEEECCSSSC--GGGGTTEEEEEESCCGGGGTTSCEEEEESCCCTTCEEEEECSSCCEEEEE
T ss_pred CCCCEEEEECCCceEEEEEEEEeCCCCc--cccccCeEEEEecCCccCCccCceecceeecCCCceEEEEeCCCceeeEE
Confidence 5689999999999999999999765432 2455667776655531 2 233221 112234566778889999999
Q ss_pred Eeeeee
Q psy6330 104 RDWKQY 109 (123)
Q Consensus 104 R~~p~~ 109 (123)
||....
T Consensus 126 rv~~~~ 131 (293)
T 3cqo_A 126 TVLLPG 131 (293)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 49
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=98.19 E-value=8e-06 Score=58.01 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=59.1
Q ss_pred CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCcc--CcEEEec-----CCCcEEE
Q psy6330 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLR--DWKQYYG-----GNGKAEY 90 (123)
Q Consensus 18 ~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~--~W~~y~~-----~~~~~~~ 90 (123)
.+.|+... ...|||.|||++++.|.+|.+|-. =++.|.|..+.|+ . +|+.+.+ ..|+..+
T Consensus 46 ~T~W~t~g----~~Pq~i~Idf~k~~~is~~~i~~~--------~vk~~~ie~s~d~-~p~~w~~i~e~ef~~~~n~~Q~ 112 (153)
T 1tvg_A 46 ETFWTTTG----MFPQEFIICFHKHVRIERLVIQSY--------FVQTLKIEKSTSK-EPVDFEQWIEKDLVHTEGQLQN 112 (153)
T ss_dssp TCCEECCS----CSSEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSS-SSCCCEEEEEEECCCCTTCCEE
T ss_pred CceEECCC----CCCcEEEEECCCceEEEEEEEEec--------CCEEEEEEEECCC-CCcceEEeEEEEecCCCCcEEE
Confidence 57898733 457999999999999999999843 2899999999998 7 9998732 2343322
Q ss_pred EEcCCCceEeeeEEeeeee
Q psy6330 91 TEEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 91 ~~~l~~~~~~~~~R~~p~~ 109 (123)
..|..+..++||||....
T Consensus 113 -~~~~~~~~a~~lRl~i~s 130 (153)
T 1tvg_A 113 -EEIVAHGSATYLRFIIVS 130 (153)
T ss_dssp -EEECCCEEEEEEEEEEEE
T ss_pred -EEcCCCceeEEEEEEEEc
Confidence 233337889999998764
No 50
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=98.04 E-value=1.5e-06 Score=74.89 Aligned_cols=83 Identities=14% Similarity=-0.061 Sum_probs=30.5
Q ss_pred CccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCC-Cc
Q psy6330 19 GAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYI-LE 97 (123)
Q Consensus 19 ~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~-~~ 97 (123)
+.|++........++|++|||++++.|.+|.+.-+.+.+ ..+ |+|+||.|| ++|+.+ +...+ -..-++. .|
T Consensus 615 T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~~~~~~~--~~~---~~ve~S~DG-k~W~~v-~~~~~-~~~~~~~~~p 686 (716)
T 2cho_A 615 LISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDAP--CTW---GRLEISTDA-KEWKTV-DLKQK-ESRLSAGLQK 686 (716)
T ss_dssp EECC------------CEEEEEEEEEEEEEEECC--------------------------------------CCEEECTT
T ss_pred eEEECCCCccCCCCCEEEEEcCCcEEEEEEEEecCCCCC--Cce---EEEEEECCC-CCccCC-CcCCc-ceEEEeccCC
Confidence 468776531114589999999999999999886443332 233 999999999 999998 33322 2233444 58
Q ss_pred eEeeeEEeeeee
Q psy6330 98 YWRPGLRDWKQY 109 (123)
Q Consensus 98 ~~~~~~R~~p~~ 109 (123)
+.|||||+.-..
T Consensus 687 v~ARyVRl~~~~ 698 (716)
T 2cho_A 687 APVKFVRFTNVS 698 (716)
T ss_dssp CEEEEEEC----
T ss_pred ceeEEEEEEecc
Confidence 899999997554
No 51
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=98.03 E-value=6.4e-07 Score=78.74 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred CccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCC----CcceEeEEEEEEEcCCccCcEEEecCCCcE--EEEE
Q psy6330 19 GAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR----GQEYTEEYILEYWRPGLRDWKQYYGGNGKA--EYTE 92 (123)
Q Consensus 19 ~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~----~~~~V~sy~i~ys~dg~~~W~~y~~~~~~~--~~~~ 92 (123)
.-||... ...||+||||+++.|.+..+.-....+. +..-.+.|+|++|.|+ .+|+.+....||+ +...
T Consensus 835 tKWcs~~-----~~~wl~vDLg~~~tI~~~vv~hagaggE~~~~~~~NT~dF~Lq~s~d~-~~W~~vd~VtgN~~~vTd~ 908 (937)
T 3gdb_A 835 DKWSSAQ-----LSGSVDIRLTKSRTVVRWVMDHAGAGGESVNDGLMNTKDFDLYYKDAD-GEWKLAKEVRGNKAHVTDI 908 (937)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCC-----CCceEEEECCCcEEEeEEEEEecccCccccccccccccceEEEEecCC-CCeEEeeEeeCCcceeEEe
Confidence 5799763 3589999999999999999873211110 1245579999999998 9999998777764 3446
Q ss_pred cCCCceEeeeEEeeeeee
Q psy6330 93 EYILEYWRPGLRDWKQYY 110 (123)
Q Consensus 93 ~l~~~~~~~~~R~~p~~~ 110 (123)
.|..|+.|||||+.-...
T Consensus 909 ~l~~pv~ARYvRL~Vt~~ 926 (937)
T 3gdb_A 909 TLDKPITAQDWRLNVVTS 926 (937)
T ss_dssp ------------------
T ss_pred ecCCceeEEEEEEEEecC
Confidence 788999999999987764
No 52
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=97.88 E-value=6.7e-05 Score=52.00 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCC-ccCcEEEec-----CCCcEEE
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPG-LRDWKQYYG-----GNGKAEY 90 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg-~~~W~~y~~-----~~~~~~~ 90 (123)
..+.|+... ...|||.|||++++.|++|.+|-. -++.|.|..+.++ ..+|+.+.+ .+|...+
T Consensus 37 ~~T~W~s~g----~~pq~i~I~~~~~~~is~~~i~~~--------~~k~~~ie~s~~~~p~~w~~i~~~~f~~~~~~~q~ 104 (139)
T 2yc2_A 37 DNTFWVTTG----MFPQEFVLRLESCIRVSKITTLSL--------NVRKLAVEKCDQDKPDQFEKVFEVELANRGDRLQT 104 (139)
T ss_dssp TTCCEECCS----SSCEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSSSCCCCEEEEEEECCCC--CCEE
T ss_pred CCCEEeCCC----CCCeEEEEECCCceEEEEEEEEec--------CCcEEEEEEecCCCCCceEEEEEEEeecCCCCceE
Confidence 368898843 447999999999999999999842 2899999999886 148998742 2332221
Q ss_pred EEcCCCceEeeeEEeeeee
Q psy6330 91 TEEYILEYWRPGLRDWKQY 109 (123)
Q Consensus 91 ~~~l~~~~~~~~~R~~p~~ 109 (123)
..|..+..++||||....
T Consensus 105 -~~f~~~~~a~~lrl~i~s 122 (139)
T 2yc2_A 105 -EVHQVNIRAKYLKFILLQ 122 (139)
T ss_dssp -EEEEEEEEEEEEEEEEEE
T ss_pred -EEccCCCcEEEEEEEEEe
Confidence 223334459999998764
No 53
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=97.20 E-value=0.0015 Score=46.44 Aligned_cols=74 Identities=11% Similarity=-0.068 Sum_probs=53.9
Q ss_pred CceEEEecCCcE--EEEEEEecCcccCCCCcceEeEEEEEEEc--CCccCcEEEecCCCcEEE----EEcCCCceEeeeE
Q psy6330 32 REFIQIDLGSPH--VVTGVQTQGRYDHGRGQEYTEEYILEYWR--PGLRDWKQYYGGNGKAEY----TEEYILEYWRPGL 103 (123)
Q Consensus 32 ~qWLQVDLg~~~--~ItgI~tQG~~~~~~~~~~V~sy~i~ys~--dg~~~W~~y~~~~~~~~~----~~~l~~~~~~~~~ 103 (123)
..|++||||+.. .|.++.-.-+.+. ..-+..++++.|+ |+ .+|..+.....+..- .-.|..+-..|||
T Consensus 44 ~~~i~iDLG~~~~~~l~~f~Y~Pr~~~---~~~miGg~fegSnd~Df-~~~~tL~~I~~~P~~~~~~~v~~~~~k~yRYi 119 (155)
T 2yfu_A 44 GCWLGLDFGEGVRNVITQIKFCPRSGY---EQRMIGGIFQGANKEDF-SDAVTLFTITSLPGSGTLTSVDVDNPTGFRYV 119 (155)
T ss_dssp SCEEEEECCTTCCEEEEEEEEECCTTC---GGGGTTCEEEEESSTTC-TTCEEEEECCSCCCTTSCEEEECCCCCEESEE
T ss_pred CceEEEECCCCcceEEeeEEEecCccc---ccCCcEEEEEEECCCCC-CCeEEEEEecCCCcccccEEEECCCCCcEEEE
Confidence 689999999987 8999988766543 2334488899998 67 899988765443221 1245667778999
Q ss_pred Eeeeee
Q psy6330 104 RDWKQY 109 (123)
Q Consensus 104 R~~p~~ 109 (123)
|+.+..
T Consensus 120 Ry~~p~ 125 (155)
T 2yfu_A 120 RYLSPD 125 (155)
T ss_dssp EEECCT
T ss_pred EEEcCC
Confidence 999776
No 54
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.00 E-value=0.015 Score=47.55 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=59.3
Q ss_pred CcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEecCC--CcEEEEEcCCCceEeeeEEeee
Q psy6330 30 DIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGN--GKAEYTEEYILEYWRPGLRDWK 107 (123)
Q Consensus 30 ~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~~~~--~~~~~~~~l~~~~~~~~~R~~p 107 (123)
....+|++||+++..+..|.+|-.-..+ +-|++|.|.+-.+| .|..+.+.. |.+.+ ..| +|+.|+.|||.-
T Consensus 353 ~~~~~~~i~l~~~~~fn~v~l~E~I~~G---QRV~~f~ve~~~~g--~W~~v~~GtTIG~kRi-~rf-~~V~a~~lRl~I 425 (443)
T 3gza_A 353 GQKKSLTLKLGKEQSVNYCIIQENIKNG---ERIRQYQIEAKVNG--KWQTVCKGESVGHKRI-EKF-EPVEATALRLTV 425 (443)
T ss_dssp ESSSEEEEEEEEEEEEEEEEEEECGGGC---CCEEEEEEEEEETT--EEEEEEEESCCTTCEE-EEE-EEEEEEEEEEEE
T ss_pred CCCceEEEEcCCCceEeEEEEEecCCCC---CcccEEEEEEEeCC--eEEEEEeeeeecceEE-Eec-CCeeeeEEEEEE
Confidence 3468999999999999999999765443 77999999998876 699987532 33222 345 589999999998
Q ss_pred eeeCCCC
Q psy6330 108 QYYGGNG 114 (123)
Q Consensus 108 ~~~~~~~ 114 (123)
..-...+
T Consensus 426 ~~sr~~p 432 (443)
T 3gza_A 426 SESIALP 432 (443)
T ss_dssp EEESSCC
T ss_pred EecCCCc
Confidence 7644433
No 55
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=82.34 E-value=3.2 Score=33.76 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=38.5
Q ss_pred ccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcC-CccCcEEEe
Q psy6330 20 AWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRP-GLRDWKQYY 82 (123)
Q Consensus 20 aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~d-g~~~W~~y~ 82 (123)
-|..... ...--|++||++...|+-|+++-.... -.+..|+=|.| | .+|++|.
T Consensus 94 wwqs~~~---~~~v~itl~l~~~~~~~~v~~~f~s~r------P~~~~ieks~d~g-~tw~p~q 147 (525)
T 4aqs_A 94 WWQSENG---VENVTIQLDLEAEFHFTHLIMTFKTFR------PAAMLIERSSDFG-KAWGVYR 147 (525)
T ss_dssp CEECCTT---CCCCEEEEEEEEEEEEEEEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred cccCCCC---CcCeEEEEcCCCeEEEEEEEEEEECCC------CCeEEEEEecCCC-CCCccee
Confidence 3655554 456789999999999999999853322 23555666888 6 9999985
No 56
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=60.95 E-value=11 Score=29.86 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred ceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcC-CccCcEEEe
Q psy6330 33 EFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRP-GLRDWKQYY 82 (123)
Q Consensus 33 qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~d-g~~~W~~y~ 82 (123)
--|++||++...|+-|+++=....- .+..|+=|.| | .+|++|.
T Consensus 102 VtitLdL~~~f~~t~v~i~F~~~rP------~~m~Iers~d~G-~tw~p~q 145 (375)
T 4aqt_A 102 INLTLHLGKAFDITYVRLKFHTSRP------ESFAIYKRTRED-GPWIPYQ 145 (375)
T ss_dssp EEEEEEEEEEEEEEEEEEEESSSCC------SEEEEEEESSSS-SCCEEEE
T ss_pred eEEEEcCCCeEEEEEEEEEecCCCC------CcEEEEEecCCC-CCcccee
Confidence 4699999999999999998432221 1333433444 6 9999884
No 57
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=60.84 E-value=14 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=31.8
Q ss_pred CceEEEecCCcEEEEEEEecCc-ccCCCCcceEeEEEEEEEcC-CccCcEEEe
Q psy6330 32 REFIQIDLGSPHVVTGVQTQGR-YDHGRGQEYTEEYILEYWRP-GLRDWKQYY 82 (123)
Q Consensus 32 ~qWLQVDLg~~~~ItgI~tQG~-~~~~~~~~~V~sy~i~ys~d-g~~~W~~y~ 82 (123)
.-=|++||++...|+-|+++=. ... -.+..|+=|.| | .+|.+|.
T Consensus 107 ~V~itLdL~~~f~~t~v~l~F~~spR------P~~m~ierS~D~G-~tW~p~q 152 (403)
T 2y38_A 107 EVNVTLDLGQVFHVAYVLIKFANSPR------PDLWVLERSTDFG-HTYQPWQ 152 (403)
T ss_dssp CCEEEEEEEEEEEEEEEEEEECSSCC------CSEEEEEEESSSS-SSEEEEE
T ss_pred cceeEEeCCCcEEEEEEEEEecCCCC------CCeEEEEeccCCC-CCcccee
Confidence 5679999999999999999853 211 12444555888 6 8898875
No 58
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=54.02 E-value=15 Score=29.72 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=36.9
Q ss_pred CccccCCCCC--CCcCceEEEecCCcEEEE-EEEecCcccCCCCcceEeEEEEEEEcC-CccCcEEEe
Q psy6330 19 GAWCPKNPVE--KDIREFIQIDLGSPHVVT-GVQTQGRYDHGRGQEYTEEYILEYWRP-GLRDWKQYY 82 (123)
Q Consensus 19 ~aW~p~~~~~--~~~~qWLQVDLg~~~~It-gI~tQG~~~~~~~~~~V~sy~i~ys~d-g~~~W~~y~ 82 (123)
.-|......+ +...-=|++||++...|+ -|+++-....- .+..|+=|.| | .+|.+|.
T Consensus 116 twWQS~~~~~~~~p~~V~itLdL~~~f~~t~~i~l~F~spRP------~am~ierS~D~G-~tW~p~q 176 (426)
T 3zyj_B 116 TFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRP------DQMILEKSLDYG-RTWQPYQ 176 (426)
T ss_dssp CCEEBCCCCSCSSCCCEEEEEEEEEEEEECSCEEEEESSCCC------SEEEEEEESSTT-SSCEEEE
T ss_pred ceecCCcccCCCCccceeEEEcCCCcEEEEEEEEeecCCCCC------CeEEEEeccCCC-CCceehH
Confidence 4566655421 112467889999999998 57777543221 2445666888 7 9999984
No 59
>3nng_A Uncharacterized protein; F5_F8_TYPE_C domain, NESG, structural genomics, PSI-2, prote structure initiative; 2.18A {Bacteroides fragilis}
Probab=52.29 E-value=54 Score=22.50 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=49.9
Q ss_pred CceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEEEEcCCccCcEEEe------cCCCcEEEEEcCCCce-EeeeEE
Q psy6330 32 REFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYY------GGNGKAEYTEEYILEY-WRPGLR 104 (123)
Q Consensus 32 ~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ys~dg~~~W~~y~------~~~~~~~~~~~l~~~~-~~~~~R 104 (123)
.-|-.--|..+..++|..+.-....++ +.=+++=+|.-..+|...|..|. +-.|+..---.+.||+ ..+.+|
T Consensus 61 ecww~t~lp~p~~ltgfsvtkqsaygs-synlr~aeikvrkeg~tew~~y~~~~~f~sfkgndpqyav~~p~i~nvkefr 139 (168)
T 3nng_A 61 ECWWNTVLDRPVTLTGFSVTKQSAYGS-GYNLRSAEIKVRKEGETEWVTYPRVLTFRNFKGADPQYAAIEPPIPNVKEFR 139 (168)
T ss_dssp CCEEEEEEEEEEEEEEEEECCCSSSCG-GGBCCEEEEEEEETTCSSCEECSSCEECCCCCTTCCEEEEEEEEEEEEEEEE
T ss_pred ceehhcccCCceeeeeeeEEeeeeccc-ccccceeeEEEeecCcceeEeecceEEeccccCCCCceeEecCCCCChheeE
Confidence 467777788899999877754333332 34578999999999988999974 3355544444455666 455566
Q ss_pred ee
Q psy6330 105 DW 106 (123)
Q Consensus 105 ~~ 106 (123)
|-
T Consensus 140 in 141 (168)
T 3nng_A 140 IN 141 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 60
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=51.55 E-value=18 Score=28.37 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=36.5
Q ss_pred CCccccCCCCC--CCcCceEEEecCCcEEEE-EEEecCcccCCCCcceEeEEEEEEEcC-CccCcEEEe
Q psy6330 18 GGAWCPKNPVE--KDIREFIQIDLGSPHVVT-GVQTQGRYDHGRGQEYTEEYILEYWRP-GLRDWKQYY 82 (123)
Q Consensus 18 ~~aW~p~~~~~--~~~~qWLQVDLg~~~~It-gI~tQG~~~~~~~~~~V~sy~i~ys~d-g~~~W~~y~ 82 (123)
..-|......+ +...-=|++||++...|+ -|+++-.... -.+..|+=|.| | .+|..|.
T Consensus 87 ~TwWQS~~~~~~~~p~~VnlTL~L~k~felt~~iil~F~spR------P~sm~ierS~D~G-~tW~P~Q 148 (338)
T 3tbd_A 87 ATYWQSITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYGR------PTVMVLEKSLDNG-RTWQPYQ 148 (338)
T ss_dssp CCCEEBCCSTTTTSCCCEEEEEEEEEEEEECSCEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred CceeccCcccCCCCCccceEEEcCCCeEEEEEEEEeecCCCC------CCeEEEEeccCCC-CCceeeh
Confidence 35566655311 011234899999999998 5777754322 12455666888 7 9999984
No 61
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=49.85 E-value=64 Score=22.65 Aligned_cols=92 Identities=9% Similarity=-0.003 Sum_probs=59.9
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceE-eEEEEEEEcCCccCcEEEecCCC---cEEEEE
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYT-EEYILEYWRPGLRDWKQYYGGNG---KAEYTE 92 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V-~sy~i~ys~dg~~~W~~y~~~~~---~~~~~~ 92 (123)
....|..... ..+|+.|+|.+.+.|..|.++=....+ ..|. +.-.|.-+.+. .+|..+....- ..-+.-
T Consensus 49 ~~TyWqSdg~----qpH~I~i~f~k~v~i~~l~i~vd~~~D--eSYtPs~I~v~aG~~~-~dL~ei~~v~l~~p~Gwv~i 121 (171)
T 1jhj_A 49 LETYWQSDGS----QPHLVNIQFRRKTTVKTLCIYADYKSD--ESYTPSKISVRVGNNF-HNLQEIRQLELVEPSGWIHV 121 (171)
T ss_dssp TTCCEECCSS----SSEEEEEEEEEEEEECEEEEEEEHHHH--GGGSEEEEEEEEESST-TSCEEEEEEECSSCEEEEEE
T ss_pred CCeeEccCCC----CCeEEEEEECCCceEEEEEEEECCCCC--CCCCcEEEEEEEeCCc-ccceeEEEEEccCCCEEEEE
Confidence 3588988764 489999999999999999988654222 2344 55666777777 77887753211 111222
Q ss_pred cC----CCceEeeeEEeeeeeeCCCCc
Q psy6330 93 EY----ILEYWRPGLRDWKQYYGGNGK 115 (123)
Q Consensus 93 ~l----~~~~~~~~~R~~p~~~~~~~~ 115 (123)
.+ ..++.+.+|+|.-..=-.+|+
T Consensus 122 ~l~~~~~~~~~~~~IQI~I~~nhqnG~ 148 (171)
T 1jhj_A 122 PLTDNHKKPTRTFMIQIAVLANHQNGR 148 (171)
T ss_dssp ECBCTTSSBEEEEEEEEEEEEEGGGCS
T ss_pred EeccCCCCceeEEEEEEEEeccCCCCC
Confidence 22 346788888887766444663
No 62
>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=40.28 E-value=46 Score=20.02 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=24.2
Q ss_pred ceEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCCC
Q psy6330 61 EYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYIL 96 (123)
Q Consensus 61 ~~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~~ 96 (123)
.-+..|.|.|...+...|..+............|.|
T Consensus 39 ~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p 74 (110)
T 2crz_A 39 SPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLP 74 (110)
T ss_dssp SCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCT
T ss_pred ceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCC
Confidence 457899999986554679887665555555555654
No 63
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=35.61 E-value=21 Score=25.72 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccC----CCCcceEeEEEEEEEcCC-ccCcEEE
Q psy6330 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDH----GRGQEYTEEYILEYWRPG-LRDWKQY 81 (123)
Q Consensus 17 ~~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~----~~~~~~V~sy~i~ys~dg-~~~W~~y 81 (123)
-+.+||.... ..+|.|.|.++..+++|.++--... ...+.=.+.|.|.-..+. ...|..+
T Consensus 79 pG~CW~f~g~-----~g~l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~L 143 (198)
T 4dxt_A 79 PGNCWAFQGP-----QGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLL 143 (198)
T ss_dssp TTCSEEEETT-----CEEEEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEE
T ss_pred CcceeecCCC-----cceeeeecCCeEEEEEEEEEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEE
Confidence 3789998764 4689999999999999999854210 001244678998877775 1245544
No 64
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=33.55 E-value=37 Score=24.16 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCceEeeeEEe------eeeeeCCCCccccCCC
Q psy6330 95 ILEYWRPGLRD------WKQYYGGNGKAVDSPH 121 (123)
Q Consensus 95 ~~~~~~~~~R~------~p~~~~~~~~~~~~~~ 121 (123)
.-|+.++.++| .|..|. .|+||.+-|
T Consensus 94 ~YP~~PPeV~F~~~~~~hpnmY~-~G~ICLdIL 125 (172)
T 2z6o_A 94 TYPTTAPEIAVPELDGKTAKMYR-GGKICLTDH 125 (172)
T ss_dssp TTTTSCCCCBCGGGTTTCSSBCT-TSBBCCCTT
T ss_pred CCCCCCCeeeeCCCCCCCCCCCC-CCcEechhh
Confidence 45667788888 777886 599999876
No 65
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=29.06 E-value=70 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.5
Q ss_pred EEEEcCCccCcEEEecCCCcEEEEEcCCCce
Q psy6330 68 LEYWRPGLRDWKQYYGGNGKAEYTEEYILEY 98 (123)
Q Consensus 68 i~ys~dg~~~W~~y~~~~~~~~~~~~l~~~~ 98 (123)
|-...++ ..|..+...+|+..+.-+|.||.
T Consensus 74 i~Sd~~~-LK~vk~e~d~G~g~v~iELePPc 103 (143)
T 1uw7_A 74 LLSDHQD-LKWARFPKSDGTGTIYTELEPPC 103 (143)
T ss_dssp EEESCSC-CCEEEEECTTSSCEEEEEBCCCC
T ss_pred EEeCCCC-ceEEEEEecCCceEEEEecCCCc
Confidence 3344455 78888888899988889999996
No 66
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=26.55 E-value=14 Score=34.39 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCcCceEEEecCCcEEEEEEEecCcccCCCCcceEeEEEEE
Q psy6330 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILE 69 (123)
Q Consensus 18 ~~aW~p~~~~~~~~~qWLQVDLg~~~~ItgI~tQG~~~~~~~~~~V~sy~i~ 69 (123)
...|...-+.. ...+||+|||+++..|+++.-.-|.+.. +..|+.|+|.
T Consensus 1481 sT~WHT~ws~~-~~Ph~ItIDLge~~tVsGf~YLPRQdg~--NG~Ik~YeI~ 1529 (1531)
T 3ecq_A 1481 SSLWHTSWGGG-DVGKPATMVLKEATEITGLRYVPRGSGS--NGNLRDVKLV 1529 (1531)
T ss_dssp ----------------------------------------------------
T ss_pred CCcEecCCCCC-CCCeEEEEECCCceEEccEEEecCCCCC--CCcEEEEEEE
Confidence 34455543211 3468999999999999999887776543 4788888875
No 67
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=26.32 E-value=89 Score=18.65 Aligned_cols=44 Identities=18% Similarity=-0.002 Sum_probs=25.5
Q ss_pred eEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCCCceEeeeEEeee
Q psy6330 62 YTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLRDWK 107 (123)
Q Consensus 62 ~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~~~~~~~~~R~~p 107 (123)
-+..|.|.|...+ ..|..+............|.| ...=.+|+.-
T Consensus 37 ~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~v~~L~p-~t~Y~frV~A 80 (106)
T 1x4x_A 37 DVTEYRLEWGGVE-GSMQICYCGPGLSYEIKGLSP-ATTYYCRVQA 80 (106)
T ss_dssp CCCEEEEEEESST-TSCCEEEEESCSEEEEESCCS-SCEEEEEEEE
T ss_pred cceEEEEEEEcCC-CceEEEEeCCcceEEEcCCCC-CCEEEEEEEE
Confidence 4778999998877 667655444444444455543 2222344443
No 68
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=25.37 E-value=17 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=11.9
Q ss_pred EeeeeeeCCCCccccCC
Q psy6330 104 RDWKQYYGGNGKAVDSP 120 (123)
Q Consensus 104 R~~p~~~~~~~~~~~~~ 120 (123)
|+.|.++. +|+||.+-
T Consensus 98 ~~HPNV~~-~G~ICL~i 113 (136)
T 2a7l_A 98 PVHPHVYS-NGHICLSI 113 (136)
T ss_dssp CCBTTBCT-TCBBCCGG
T ss_pred CCCccCCC-CCeEEchh
Confidence 45777765 89999863
No 69
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.28 E-value=1.1e+02 Score=18.46 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=23.6
Q ss_pred eEeEEEEEEEcCCc-cCcEEEecCCCcEEEEEcCCC
Q psy6330 62 YTEEYILEYWRPGL-RDWKQYYGGNGKAEYTEEYIL 96 (123)
Q Consensus 62 ~V~sy~i~ys~dg~-~~W~~y~~~~~~~~~~~~l~~ 96 (123)
-+..|.|.|...+. ..|..+............|.|
T Consensus 49 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p 84 (120)
T 2crm_A 49 TINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNP 84 (120)
T ss_dssp CCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCT
T ss_pred eeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCC
Confidence 47899999987762 389988665555544455543
No 70
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=25.12 E-value=89 Score=20.86 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=21.3
Q ss_pred EEEEcCCccCcEEEecCCCcEEEEEcCCCce
Q psy6330 68 LEYWRPGLRDWKQYYGGNGKAEYTEEYILEY 98 (123)
Q Consensus 68 i~ys~dg~~~W~~y~~~~~~~~~~~~l~~~~ 98 (123)
|....++ ..|..+...+|...+.-+|.||.
T Consensus 44 i~Sd~~~-LK~vk~e~d~G~g~v~iELePPc 73 (121)
T 3ee7_A 44 LLSDHQD-LKWARFPKSDGTGTIYTELEPPC 73 (121)
T ss_dssp EEESCSC-CCEEEECCC--CEEEEEEBCCCE
T ss_pred EEeCCCC-ceEEEEEecCCCCeEEEecCCCc
Confidence 3444555 78888888888888889999996
No 71
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=23.43 E-value=55 Score=23.63 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=16.0
Q ss_pred EEEEEEEcCCccCcEEEec
Q psy6330 65 EYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 65 sy~i~ys~dg~~~W~~y~~ 83 (123)
.|.+.||.|| .+|+.+..
T Consensus 158 ~~~f~YS~DG-~~W~~lr~ 175 (221)
T 3o12_A 158 VLRIQVSSDK-KTWPLVRL 175 (221)
T ss_dssp EEEEEEESSS-SCCCEEEE
T ss_pred EEEEEEECCC-CCCEECcc
Confidence 7899999999 99998865
No 72
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=21.21 E-value=1.4e+02 Score=17.80 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=23.9
Q ss_pred ceEeEEEEEEEcCCc-cCcEEEecCCCcEEEEEcCCC
Q psy6330 61 EYTEEYILEYWRPGL-RDWKQYYGGNGKAEYTEEYIL 96 (123)
Q Consensus 61 ~~V~sy~i~ys~dg~-~~W~~y~~~~~~~~~~~~l~~ 96 (123)
.-+..|.|.|...+. ..|..+............|.|
T Consensus 46 ~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p 82 (118)
T 1x3d_A 46 SKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSP 82 (118)
T ss_dssp SCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCT
T ss_pred CcceEEEEEEecCCCCCCeEEeeccCCcEEEeCCCCC
Confidence 457899999987762 478877655555554455643
No 73
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.12 E-value=97 Score=18.74 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCC
Q psy6330 62 YTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYI 95 (123)
Q Consensus 62 ~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~ 95 (123)
-+..|.|.|.......|..+............|.
T Consensus 40 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~ 73 (110)
T 2db8_A 40 PADGYILELDDGNGGQFREVYVGKETMCTVDGLH 73 (110)
T ss_dssp CCSEEEEEECCSSSSCCEEEEEESCSCEEEECCC
T ss_pred CccEEEEEEEeCCCCceEEEEeCCcCEEEECCCC
Confidence 4678888887654357876654333333334454
No 74
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Pectobacterium atrosepticum}
Probab=20.73 E-value=68 Score=22.49 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=15.6
Q ss_pred EEEEEEEcCCccCcEEEec
Q psy6330 65 EYILEYWRPGLRDWKQYYG 83 (123)
Q Consensus 65 sy~i~ys~dg~~~W~~y~~ 83 (123)
.|.+.||.|| .+|..+..
T Consensus 129 ~~~~~yS~DG-~~w~~l~~ 146 (198)
T 3mep_A 129 VIRIQYSIDG-KNWPLLRL 146 (198)
T ss_dssp EEEEEEESSS-SCCCEEEE
T ss_pred EEEEEEECCC-CEEEECce
Confidence 6889999999 99998764
No 75
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=1.5e+02 Score=17.76 Aligned_cols=36 Identities=8% Similarity=-0.073 Sum_probs=24.5
Q ss_pred ceEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCCC
Q psy6330 61 EYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYIL 96 (123)
Q Consensus 61 ~~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~~ 96 (123)
..+..|.|.|...+...|...............|.|
T Consensus 59 g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p 94 (124)
T 2ed9_A 59 GFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEK 94 (124)
T ss_dssp SCCCEEEEEEEESSSSCCEEEECSSCSEEEEECCCS
T ss_pred cEEeEEEEEEEECCCCcceEEecCCcCEEEEcCCCC
Confidence 568899999988764566655555555555666653
No 76
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=20.16 E-value=1.3e+02 Score=19.34 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=29.5
Q ss_pred eEeEEEEEEEcCCccCcEEEecCCCcEEEEEcCCCceEeeeEEeeee
Q psy6330 62 YTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLRDWKQ 108 (123)
Q Consensus 62 ~V~sy~i~ys~dg~~~W~~y~~~~~~~~~~~~l~~~~~~~~~R~~p~ 108 (123)
-+..|.|.|...+...|..+............|.|- ..=.+|+.-.
T Consensus 133 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-t~Y~~~V~A~ 178 (197)
T 3lpw_A 133 RILGYIVEMQTKGSDKWATCATVKVTEATITGLIQG-EEYSFRVSAQ 178 (197)
T ss_dssp CCCEEEEEEEETTCSCCEEEEEESSSEEEECCCCTT-CEEEEEEEEE
T ss_pred cccEEEEEEEeCCCCceEEeecccccEEEeCCcCCC-CEEEEEEEEE
Confidence 577899999877657788877666666666666543 2223444433
Done!