RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6330
(123 letters)
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 78.6 bits (193), Expect = 2e-18
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-----GQEYTEEYILEYWR 72
W P+ P + E++Q+DLG+P V GV QG + + ++ + Y
Sbjct: 330 RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSL 389
Query: 73 PGLRDWKQYYGGNGKAE 89
G +DW+ +
Sbjct: 390 NG-KDWEYIQDPRTQQP 405
Score = 58.6 bits (141), Expect = 2e-11
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 19 GAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLRD 77
G P +E++Q+DL ++T + TQG + Y + Y LE G D
Sbjct: 172 GDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-ED 230
Query: 78 WKQYYGGNG 86
W Y G
Sbjct: 231 WMVYRHGKN 239
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune
system-transferase complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 351
Score = 77.5 bits (190), Expect = 3e-18
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL+ GAWCP V E++Q+DL H+V V TQGR+ G G+E++ Y L Y
Sbjct: 38 RLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRY 97
Query: 71 WRPGLRDWKQYYGGNGKAEYT 91
R G R W + G+ +
Sbjct: 98 SRDG-RRWMGWKDRWGQEVIS 117
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 76.3 bits (187), Expect = 1e-17
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW K + +++QIDL +T + TQG + Y + Y + Y
Sbjct: 525 RLNAQGRVNAWQAKA---NNNNQWLQIDLLKIKKITAIVTQGCKSLS-SEMYVKSYTIHY 580
Query: 71 WRPGLRDWKQYYGGNGKAE 89
G DWK Y + +
Sbjct: 581 SDQG-TDWKPYREKSSMVD 598
Score = 60.2 bits (145), Expect = 6e-12
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQ 80
K E + +IQ+D+ ++TG+QTQG + YT E+ + Y ++W+
Sbjct: 372 IAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGAKHYL-KPYYTTEFCVAYSLDR-KNWRI 429
Query: 81 YYGGNGK 87
+ G + +
Sbjct: 430 FKGNSTR 436
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase,
nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo
sapiens} PDB: 2z4f_A
Length = 178
Score = 71.6 bits (175), Expect = 7e-17
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 11 RLKVEQAGGAWCPKNPVE-KDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILE 69
RL E+ GAWCP+ PVE D++EF+QIDL + H +T V TQGR+ G G E+ Y +
Sbjct: 50 RLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKIN 109
Query: 70 YWRPGLRDWKQYYGGNGKAEYT 91
Y R G W + +GK
Sbjct: 110 YSRDG-TRWISWRNRHGKQVLD 130
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 70.8 bits (173), Expect = 2e-16
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQE-YTEEYILEYWRPGLR 76
W P RE+IQ+DLG VT V TQG ++ Y + Y ++ G
Sbjct: 43 ENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-E 98
Query: 77 DWKQYYGGNGKAEYT 91
DW GN +
Sbjct: 99 DWITIKEGNKPVLFQ 113
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant,
anti- coagulant, membrane binding, phosphatidyl-serine
binding; 1.67A {Bos taurus} PDB: 2pqs_A
Length = 158
Score = 69.6 bits (170), Expect = 3e-16
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW + E++QIDLGS VTG+ TQG D G Q Y Y + Y
Sbjct: 39 RLDNQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFGHIQ-YVAAYRVAY 94
Query: 71 WRPGLRDWKQYYGGNGK 87
G W +Y
Sbjct: 95 GDDG-VTWTEYKDPGAS 110
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family,
calcium- independent, blood clotting; 1.87A {Homo
sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Length = 160
Score = 69.1 bits (169), Expect = 3e-16
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL + AW K + +++++IDL +T + TQG + Y + Y + Y
Sbjct: 38 RLNAQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHY 93
Query: 71 WRPGLRDWKQYYGGNGK 87
G +WK Y +
Sbjct: 94 SEQG-VEWKPYRLKSSM 109
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin
domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium
discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Length = 254
Score = 70.5 bits (172), Expect = 4e-16
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD 77
AWC D ++I P V QGR D ++ Y + Y
Sbjct: 48 SEAWCSSI---VDTNQYIVAGCEVPRTFMCVALQGRGDAD---QWVTSYKIRYSLDN-VS 100
Query: 78 WKQYYGGNG 86
W +Y G
Sbjct: 101 WFEYRNGAA 109
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 71.8 bits (175), Expect = 6e-16
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD 77
AW P+ + +E++Q+D VTGV TQG Y +E+++ + G
Sbjct: 654 SNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSM-YVKEFLISSSQDG-HQ 708
Query: 78 WKQYYGGNG 86
W ++
Sbjct: 709 WTLFFQNGK 717
Score = 52.9 bits (126), Expect = 2e-09
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 19 GAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDW 78
G+ + K+ +I++DL +P ++ G++TQG Y ++I+ Y G + W
Sbjct: 495 GSINAWST--KEPFSWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSLDG-KKW 550
Query: 79 KQYYGGNGK 87
+ Y G +
Sbjct: 551 QTYRGNSTG 559
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion;
1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A*
2vme_A*
Length = 257
Score = 70.4 bits (172), Expect = 6e-16
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 17 AGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLR 76
+W D +FI S + TQGR DH ++ Y L Y
Sbjct: 48 GSESWSSSV---LDKNQFIVAGSDSVKHFVAISTQGRGDH---DQWVTSYKLRYTLDN-V 100
Query: 77 DWKQY 81
+W +Y
Sbjct: 101 NWVEY 105
Score = 28.5 bits (63), Expect = 0.48
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 17/75 (22%)
Query: 51 QGRYDHGRGQEYTEEYILEYWRPGLRDWKQYY----------------GGNGKAEYTEEY 94
+ ++ + E W + D Q+ G ++ Y
Sbjct: 32 NSILNFSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSY 91
Query: 95 ILEYWRPGLRDWKQY 109
L Y +W +Y
Sbjct: 92 KLRYTLDN-VNWVEY 105
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood
coagulation, calcium, DIS mutation, disulfide bond,
glycoprotein, hemophilia; 1.07A {Homo sapiens} PDB:
3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Length = 159
Score = 68.0 bits (166), Expect = 8e-16
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 11 RLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
RL ++ AW P+ + +E++Q+D VTGV TQG Y +E+++
Sbjct: 40 RLHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISS 95
Query: 71 WRPGLRDWKQYYGGN 85
+ G W ++
Sbjct: 96 SQDG-HQWTLFFQNG 109
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 68.2 bits (166), Expect = 9e-15
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD 77
W I E++QIDLG +V G+ QG + ++ + Y G D
Sbjct: 332 RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKV-FMRKFKIGYSNNG-SD 389
Query: 78 WKQYYGGNGKAE 89
WK + +
Sbjct: 390 WKMIMDDSKRKA 401
Score = 52.0 bits (124), Expect = 4e-09
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRG-QEYTEEYILEYWRPGLRDWK 79
P E RE+IQ+DLG VT V TQG + Y + Y ++ G DW
Sbjct: 176 ENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWI 234
Query: 80 QYYGGNG 86
GN
Sbjct: 235 TIKEGNK 241
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis,
developmen protein, differentiation, glycoprotein,
heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A
3i97_A* 1kex_A
Length = 318
Score = 67.1 bits (163), Expect = 1e-14
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQE-YTEEYILEYWRPGLR 76
W P RE+IQ+DLG VT V TQG ++ Y + Y ++ G
Sbjct: 44 ENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-E 99
Query: 77 DWKQYYGGNGKAEYT 91
DW GN +
Sbjct: 100 DWITIKEGNKPVLFQ 114
Score = 56.3 bits (135), Expect = 9e-11
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRD 77
W I E++QIDLG +V G+ QG + + ++ + Y G D
Sbjct: 200 RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SD 257
Query: 78 WKQYYGGNGKAEYTEE 93
WK + + + E
Sbjct: 258 WKMIMDDSKRKAKSFE 273
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 67.3 bits (164), Expect = 2e-14
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-----GQEYTEEYILEYWR 72
W P+ P + E++Q+DLG+P V GV QG + + ++ + Y
Sbjct: 449 RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSL 508
Query: 73 PGLRDWKQYYGGNG 86
G +DW+
Sbjct: 509 NG-KDWEYIQDPRT 521
Score = 60.7 bits (147), Expect = 3e-12
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQ-EYTEEYILEYWRPGLR 76
W P +E++Q+DL ++T + TQG Y + Y LE G
Sbjct: 293 DNGWTPNLD---SNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-E 348
Query: 77 DWKQYYGGNG 86
DW Y G
Sbjct: 349 DWMVYRHGKN 358
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental
protein, differentiation, glycoprotein, membrane,
neurogenesis, transmembrane; 1.95A {Homo sapiens}
Length = 325
Score = 63.7 bits (154), Expect = 2e-13
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYD-HGRGQEYTEEYILEYWRPGLR 76
W P +E++Q+DL ++T + TQG + Y + Y LE G
Sbjct: 45 DNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-E 100
Query: 77 DWKQYYGGNGKAEYT 91
DW Y G +
Sbjct: 101 DWMVYRHGKNHKVFQ 115
Score = 57.1 bits (137), Expect = 5e-11
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 18 GGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGR-----GQEYTEEYILEYWR 72
W P+ P + E++Q+DLG+P V GV QG + + ++ + Y
Sbjct: 201 RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSL 260
Query: 73 PGLRDWKQYYGGNGKAEYT 91
G +DW+ +
Sbjct: 261 NG-KDWEYIQDPRTQQPKL 278
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate
binding module, toxin, secreted, virulence, hydrolase,
glycosidase; HET: MSE BTB; 1.45A {Clostridium
perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Length = 192
Score = 36.9 bits (85), Expect = 6e-04
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 33 EFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
EFI +DLG + G++ + G + ++ LEY
Sbjct: 66 EFIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFKLEY 103
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module,
sugar-binding protein, pectin, plant cell WALL,
galacturonic acid; 1.35A {Yersinia enterocolitica} PDB:
2jd9_A
Length = 145
Score = 35.9 bits (83), Expect = 0.001
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYT 63
W ++Q++L + + R +++
Sbjct: 38 WAASGE------SWVQLELDKEQSIENILIVPFKPTERKLKFS 74
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase,
hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 32.3 bits (72), Expect = 0.036
Identities = 6/61 (9%), Positives = 13/61 (21%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEY 94
Q +L P + G++ R + Y + +
Sbjct: 1274 YQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADGTTKDVVTDAEFSTTTMWQK 1333
Query: 95 I 95
Sbjct: 1334 A 1334
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 28.4 bits (63), Expect = 0.31
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 71 WRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLRDWKQYYGGNG 114
W ++ G E + +E P + + Y G
Sbjct: 36 WDLEQKE-----KRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYA 74
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside
hydrolase, GH84C, hydrolase; HET: GAL; 1.49A
{Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Length = 150
Score = 28.7 bits (64), Expect = 0.32
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEY 94
+ ++L + + + V+ R D G Y + G ++ + G + ++
Sbjct: 55 LTLELDNVYEINKVKYAPRQDSKNG--RITGYKVSVSLDG-ENFTEVKTGTLEDNAAIKF 111
Query: 95 I 95
I
Sbjct: 112 I 112
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 29.3 bits (64), Expect = 0.36
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEY 94
+ ++L + + + V+ R D G Y + G ++ + G + ++
Sbjct: 642 LTLELDNVYEINKVKYAPRQDSKNG--RITGYKVSVSLDG-ENFTEVKTGTLEDNAAIKF 698
Query: 95 I 95
I
Sbjct: 699 I 699
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG, BTR319D.BT_411;
3.00A {Bacteroides thetaiotaomicron}
Length = 172
Score = 28.4 bits (63), Expect = 0.42
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQE--YTEEYILEY 70
W + V++ + + D+G + + ++ +E
Sbjct: 53 WLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEA 104
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: GAL; 1.55A {Clostridium
perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Length = 161
Score = 28.3 bits (63), Expect = 0.48
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQ 80
W K +++ + I ++LG + + R G +Y L G ++++
Sbjct: 59 WHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAKNG--NITKYELHVSEDG-NNFRK 115
Query: 81 YYGGNGKAEYTEEYI 95
GN + + +
Sbjct: 116 ISEGNWDDSGSLKTL 130
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is
predominantly composed of B strands., structural
genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB:
2kd7_A
Length = 159
Score = 28.3 bits (63), Expect = 0.50
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
I ID+ + ++ R + E
Sbjct: 57 IIIDMNHRVKIAQIELLPRGRGSNN--PIKVVRFEA 90
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen,
carbohydrate-binding module, sugar-binding protein;
HET: GAL; 2.25A {Clostridium perfringens}
Length = 143
Score = 27.9 bits (62), Expect = 0.55
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
+ ++LG V+ + R G + +Y +
Sbjct: 55 LSVNLGKARKVSSIAITPRTSGNNG--FITKYEIHA 88
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 27.8 bits (61), Expect = 1.2
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 43 HVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPG 102
VVT + G + + + +D + YGG + EE +Y P
Sbjct: 725 EVVTATRVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQAKYGG----AFLEELQAKY--PE 778
Query: 103 LRDWKQYYGGN 113
L KQ G
Sbjct: 779 LFARKQISTGV 789
Score = 27.4 bits (60), Expect = 1.4
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 17/101 (16%)
Query: 37 IDLGSPHVVTGVQTQGRY--DHGRGQEYTEEYILEYWR------------PGLRDWKQYY 82
+D +P V + + G + + R D+ +
Sbjct: 195 VDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAA 254
Query: 83 GGNGKAEYTEE---YILEYWRPGLRDWKQYYGGNGKAVDSP 120
G K + ILE W + G N +D+
Sbjct: 255 KGIHKNDKAANDHLSILEAWSYNDTPYLHDDGDNMINMDNR 295
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 27.2 bits (60), Expect = 1.2
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 21 WCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYT 63
W N IDL + V ++ + G ++
Sbjct: 58 WISDNGAMP---ANATIDLEGNNFVDFLELHFEKE-GFRFQFK 96
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A,
Q8A9F0_bactn, BT_0865, PSI-2, protein structure
initiative; 3.00A {Bacteroides thetaiotaomicron}
Length = 169
Score = 26.4 bits (58), Expect = 2.0
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 2/36 (5%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEY 70
I ID+ + V+ R +
Sbjct: 67 IVIDMKQNIQIAQVELLPRGRGSNN--PIKVVEFAA 100
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA
binding protein, argonaute, miRNA, siRNA; 3.65A
{Neurospora crassa}
Length = 437
Score = 26.6 bits (58), Expect = 2.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 56 HGRGQEYTEEYILEYWRPGLRDWKQYYGGNGK 87
+ GQE E + ++ L W+ N
Sbjct: 203 NPHGQESMTEQFTDKFKTRLELWRSNPANNRS 234
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 26.5 bits (57), Expect = 2.8
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 35 IQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEY 94
ID+ + V G+ R D G + + + G G+ A+ T +Y
Sbjct: 72 YTIDMKTTQNVNGLSMLPRQD-GNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKY 130
Query: 95 I 95
Sbjct: 131 S 131
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: MSE; 1.55A {Clostridium
perfringens}
Length = 149
Score = 25.9 bits (57), Expect = 3.0
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 33 EFIQIDLGSPHVVTGVQTQGRYDHGRG 59
+ + DL ++ + + +
Sbjct: 63 KSVTFDLSKEKDISAIDIVSKGNSPLK 89
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding
protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A
{Neurospora crassa} PDB: 2xdy_A
Length = 388
Score = 25.9 bits (56), Expect = 4.6
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 56 HGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPG 102
+ GQE E + ++ L W+ N + G
Sbjct: 203 NPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEG 249
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 25.1 bits (55), Expect = 4.9
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 66 YILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLRDWKQYY 110
Y E+ G W + +A + GL+ Y
Sbjct: 41 YKAEWRAVGEEVWHSKWYDAKEASMEGIVTIV----GLKPETTYA 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 6/24 (25%)
Query: 59 GQEYTEEYILEYWRPGLRD-WKQY 81
GQ T++Y E LRD ++ Y
Sbjct: 162 GQGNTDDYFEE-----LRDLYQTY 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.140 0.462
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,216,620
Number of extensions: 129545
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 62
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)