RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6330
         (123 letters)



>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 155

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 10  RRLKVEQAGGAWCPKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILE 69
            R ++      W P    E   RE+IQ+DLG    VT V TQG       ++Y  +    
Sbjct: 32  ERSRLNYPENGWTPG---EDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKI 88

Query: 70  YWRPGLRDWKQYY 82
                  DW    
Sbjct: 89  DVSSNGEDWITIK 101


>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain
           {Micromonospora viridifaciens [TaxId: 1881]}
          Length = 142

 Score = 29.2 bits (64), Expect = 0.079
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 2/80 (2%)

Query: 23  PKNPVEKDIREFIQIDLGSPHVVTGVQTQGRYDHGRGQEYTEEYILEYWRPGLRDWKQYY 82
                       I +DLG  H ++G+Q   R +         +Y +     G        
Sbjct: 37  WSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSANE--QVADYEIYTSLNGTTWDGPVA 94

Query: 83  GGNGKAEYTEEYILEYWRPG 102
            G        +  +   R  
Sbjct: 95  SGRFTTSLAPQRAVFPARDA 114


>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 285

 Score = 26.9 bits (59), Expect = 0.60
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 70  YWRPGLRDWKQYYGGNGKAEYTEEYILEYWRPGLRDW 106
           YW+         + G     +   Y ++YW    ++ 
Sbjct: 74  YWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEI 110


>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C)
           {Human hepatitis A virus [TaxId: 208726]}
          Length = 212

 Score = 23.8 bits (51), Expect = 6.1
 Identities = 9/108 (8%), Positives = 20/108 (18%), Gaps = 13/108 (12%)

Query: 2   RHLRVKAKRRLKVEQAGG------AWCPKNPVEKDIREFI--QIDLGSPHVVTGVQTQGR 53
            +  + A   +      G         P  P  +DI +    + D+              
Sbjct: 64  TYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTV 123

Query: 54  YDHGRGQEYTEEYILEYWRPGLRDWKQYYGGNGKAEYTEEYILEYWRP 101
                        + E        +          + T +        
Sbjct: 124 NGTPMLISEGPLKMEEK-----ATYVHKKNDGTTVDLTVDQAWRGKGE 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,903
Number of extensions: 26547
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 19
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)