BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6333
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 9/174 (5%)
Query: 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 132
IVE +CI WFS E+L+R A P K FF +N+ID++AI+PYY+++FL ESN + + +
Sbjct: 243 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQ 302
Query: 133 VQTRTXXXXXXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG 192
R IMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +G
Sbjct: 303 NVRRVVQIFR---------IMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 353
Query: 193 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
V++FSS YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS
Sbjct: 354 VILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 407
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 9/174 (5%)
Query: 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 132
IVE +CI W+S E+L+R A P K FF +N+ID++AI+PYY+++FL ESN + + +
Sbjct: 243 IVETLCIIWWSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQ 302
Query: 133 VQTRTXXXXXXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG 192
R IMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +G
Sbjct: 303 NVRRVVQIFR---------IMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 353
Query: 193 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
V++FSS YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS
Sbjct: 354 VILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 407
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
Query: 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 132
IVE +CI WFS E+L+R A P K FF +N+ID++AI+PY+I+L + + Q+
Sbjct: 224 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQ 283
Query: 133 VQTRTXXXXXXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG 192
Q ++R+ RI KL+RHS GLQ LG TL+ S +ELGLL+ FL +G
Sbjct: 284 GQQ-----AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 338
Query: 193 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
V++FSS YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS
Sbjct: 339 VILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 392
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
Query: 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 132
IVE +CI WFS E+L+R A P K FF +N+ID++AI+PY+I+L + + Q+
Sbjct: 224 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQ 283
Query: 133 VQTRTXXXXXXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG 192
Q ++R+ RI KL+RHS GLQ LG TL+ S +ELGLL+ FL +G
Sbjct: 284 GQQ-----AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 338
Query: 193 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
V++FSS YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS
Sbjct: 339 VILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 392
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 158 ILKLARHSTGLQSLGFTLRNSYKEL-GLLMLFLAMGVLIFSSL--AYFAEKDEHDTKFVS 214
+LK R ST LG L N + L G+ LF GV++F+ AY E+D KF S
Sbjct: 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLF---GVVLFAVALAAYVIERDIQPEKFGS 161
Query: 215 IPETFWWAGITMTTVGYGDICPTTPLGKMI 244
IP+ WWA +T++T GYGD P + G+++
Sbjct: 162 IPQAMWWAVVTLSTTGYGDTIPQSFAGRVL 191
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 201 YFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIG 245
Y E + ++ S+ + WWA +T TTVGYGD+ P TP+GK+IG
Sbjct: 152 YIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIG 196
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 201 YFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIG 245
Y E + ++ S+ + WWA +T TTVGYGD+ P TP+GK+IG
Sbjct: 164 YIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIG 208
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+CP T
Sbjct: 4 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVT 63
Query: 239 PLGKMIG 245
G+++
Sbjct: 64 LWGRLVA 70
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+CP T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVT 64
Query: 239 PLGKMIG 245
G+++
Sbjct: 65 LWGRLVA 71
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + LQ ++ G + L + +L S LA AE+ + ++ P WW
Sbjct: 24 GRHGSALQ---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWW 74
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T TTVGYGD+ P T G+++
Sbjct: 75 SVETATTVGYGDLYPVTLWGRLV 97
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 184 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 243
LM+F+ + V+I F E + ++ P+ WWA +T TTVGYGDI P TP+G++
Sbjct: 19 FLMIFVLL-VIIIPVPMVFIEPEINNY-----PDALWWAIVTATTVGYGDIVPVTPIGRI 72
Query: 244 IGS 246
+ S
Sbjct: 73 LAS 75
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 33 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVT 92
Query: 239 PLGKMI 244
G+++
Sbjct: 93 LWGRLV 98
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ IT TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVT 64
Query: 239 PLGKMIG 245
G+ +
Sbjct: 65 LWGRCVA 71
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 64
Query: 239 PLGKMI 244
G+++
Sbjct: 65 LWGRLV 70
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVT 85
Query: 239 PLGKMI 244
G+ +
Sbjct: 86 LWGRCV 91
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + L ++ G + L + +L S LA AE+ +S P+ WW
Sbjct: 41 GRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWW 91
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T TTVGYGD+ P T G+ +
Sbjct: 92 SVETATTVGYGDLYPVTLWGRCV 114
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + L ++ G + L + +L S LA AE+ + ++ P WW
Sbjct: 18 GRHGSALH---------WRAAGAATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWW 68
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T TTVGYGD+ P T G+++
Sbjct: 69 SVETATTVGYGDLYPVTLWGRLV 91
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVT 85
Query: 239 PLGKMI 244
G+ +
Sbjct: 86 LWGRCV 91
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 85
Query: 239 PLGKMI 244
G+ +
Sbjct: 86 LWGRCV 91
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVT 64
Query: 239 PLGKMIG 245
G+ +
Sbjct: 65 LWGRCVA 71
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + L ++ G + L + +L S LA AE+ + ++ P WW
Sbjct: 18 GRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWW 68
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T TTVGYGD+ P T G+ +
Sbjct: 69 SVETATTVGYGDLYPVTLWGRCV 91
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 85
Query: 239 PLGKMI 244
G+ +
Sbjct: 86 LWGRCV 91
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + L ++ G + L + +L S LA AE+ + ++ P WW
Sbjct: 18 GRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWW 68
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T TTVGYGD+ P T G+ +
Sbjct: 69 SVETATTVGYGDLYPVTLWGRCV 91
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVT 64
Query: 239 PLGKMIG 245
G+ +
Sbjct: 65 LWGRCVA 71
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVT 64
Query: 239 PLGKMIG 245
G+ +
Sbjct: 65 LWGRCVA 71
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 162 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 221
RH + L ++ G + L + +L S LA AE+ + ++ P WW
Sbjct: 18 GRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWW 68
Query: 222 AGITMTTVGYGDICPTTPLGKMI 244
+ T T VGYGD+ P T G+++
Sbjct: 69 SVETATCVGYGDLYPVTLWGRLV 91
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WWA T TTV YGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYPVT 85
Query: 239 PLGKMIG 245
G+++
Sbjct: 86 LWGRLVA 92
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 64
Query: 239 PLGKMIG 245
G+ +
Sbjct: 65 LWGRCVA 71
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 26 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 85
Query: 239 PLGK 242
G+
Sbjct: 86 LWGR 89
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 4 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 63
Query: 239 PLGKMIG 245
G+ +
Sbjct: 64 LWGRCVA 70
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T
Sbjct: 6 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 65
Query: 239 PLGKMIG 245
G+ +
Sbjct: 66 LWGRCVA 72
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 187 LFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+ L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P T G+ +
Sbjct: 34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCV 91
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 197 SSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIG 245
S A AE+ +S P+ WW+ T TTVGYGD P T G+ +
Sbjct: 23 SKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVA 71
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + H + S + +W +T+ TVGYGD P+TPLG
Sbjct: 23 ILLLVLAVIIYGTAGF------HFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG 72
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + H + S + +W +T+ TVGYGD P+TPLG
Sbjct: 23 ILLLVLAVIIYGTAGF------HFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG 72
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGY 231
++ G + L + +L S LA AE+ + ++ P WWA T TTVGY
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + + E T + +W +T+ TVGYGD P TPLG
Sbjct: 13 ILLLVLAVIIYGTAGFHFIEGESWTV------SLYWTFVTIATVGYGDYSPHTPLG 62
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ W++ +T+TTVGYGD P T GK+
Sbjct: 35 DALWFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + + E T + +W +T+ TVGYGD P TPLG
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV------SLYWTFVTIATVGYGDYSPRTPLG 55
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + + E T + +W +T+ TVGYGD P TPLG
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV------SLYWTFVTIATVGYGDYSPHTPLG 55
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + + E T + +W +T+ TVGYGD P TPLG
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV------SLYWTFVTIATVGYGDYSPHTPLG 55
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG 241
+L L + V+I+ + + + E T + +W +T+ VGYGD P TPLG
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV------SLYWTFVTIAAVGYGDYSPHTPLG 55
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVGYGD P T GK+
Sbjct: 35 DALYFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVGYGD P T GK+
Sbjct: 35 DALFFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVG+GD P T GK+
Sbjct: 35 DALYFSVVTLTTVGFGDFSPQTDFGKI 61
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVGYG+ P T GK+
Sbjct: 35 DALYFSVVTLTTVGYGEFSPQTDFGKI 61
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVGYG+ P T GK+
Sbjct: 35 DALYFSVVTLTTVGYGNFSPQTDFGKI 61
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 SLAYFAEKDE-HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
+LAY A D + + S + F+++ TM T+GYG + P PL +
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 217 ETFWWAGITMTTVGYGDICPTTPLGKM 243
+ +++ +T+TTVG GD P T GK+
Sbjct: 35 DALYFSVVTLTTVGDGDFSPQTDFGKI 61
>pdb|4DXW|A Chain A, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|B Chain B, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|C Chain C, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|D Chain D, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
Length = 229
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 47/187 (25%)
Query: 82 FSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTXXXX 141
F +E L+R +K FFK G N+ D + + ISL + +NS+
Sbjct: 55 FVIEILIRFIGEKQKADFFKSGWNIFDTVIVA---ISLIPIPNNSS-------------- 97
Query: 142 XXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLA- 200
++RI R+L+L L+ + + S + + + L L + + I++++
Sbjct: 98 -----FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGA 152
Query: 201 -YFAEKD---------------------EHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
F D +T + + E +WW+ + + + IC T
Sbjct: 153 ILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFS--FIIICSIT 210
Query: 239 PLGKMIG 245
L +I
Sbjct: 211 ILNLVIA 217
>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
Bacillus Thuringiensis At 2.5 Angstroms Resolution
Length = 584
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 78 CITWFSVEYLLRLGASPEKWKFFKG-----GLNVIDLLAIMPYY 116
C+ W++V G+S E W F L V+DL+A+ P Y
Sbjct: 183 CVKWYNVGLDKLRGSSYESWVNFNRYRREMTLTVLDLIALFPLY 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,558,970
Number of Sequences: 62578
Number of extensions: 212326
Number of successful extensions: 493
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 59
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)