Query psy6333
Match_columns 371
No_of_seqs 396 out of 2354
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:44:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 5.8E-45 1.2E-49 337.0 24.2 228 9-248 174-411 (477)
2 KOG1545|consensus 100.0 8.6E-42 1.9E-46 301.3 13.4 238 4-250 168-429 (507)
3 KOG4390|consensus 100.0 8.7E-33 1.9E-37 246.6 1.4 222 4-246 162-388 (632)
4 KOG1419|consensus 99.9 2.1E-27 4.5E-32 220.9 12.7 212 9-246 77-301 (654)
5 PLN03192 Voltage-dependent pot 99.9 2.6E-24 5.7E-29 223.9 22.0 207 14-250 50-286 (823)
6 KOG0498|consensus 99.9 1.9E-21 4.2E-26 192.5 19.7 218 17-250 69-330 (727)
7 KOG0501|consensus 99.9 2.1E-21 4.5E-26 181.9 13.5 246 24-305 211-509 (971)
8 KOG1420|consensus 99.8 5.3E-20 1.1E-24 172.3 -0.1 216 36-277 129-367 (1103)
9 PF00520 Ion_trans: Ion transp 99.7 2.3E-16 5E-21 136.5 12.9 160 73-246 1-182 (200)
10 KOG2301|consensus 99.6 1.2E-15 2.7E-20 162.5 11.3 189 4-233 427-621 (1592)
11 KOG0500|consensus 99.6 5.6E-15 1.2E-19 137.2 13.1 206 68-305 28-268 (536)
12 KOG2302|consensus 99.6 2.5E-14 5.5E-19 141.2 16.0 157 30-204 1123-1282(1956)
13 KOG2301|consensus 99.5 3.7E-13 7.9E-18 143.9 13.0 185 7-223 1144-1334(1592)
14 PRK10537 voltage-gated potassi 99.5 1.3E-12 2.9E-17 123.8 15.2 97 189-286 143-259 (393)
15 KOG2302|consensus 99.4 2.2E-12 4.7E-17 127.8 12.0 181 30-233 1440-1632(1956)
16 KOG0499|consensus 99.3 7.3E-11 1.6E-15 112.0 17.9 154 68-246 260-434 (815)
17 PF07885 Ion_trans_2: Ion chan 99.2 2.3E-11 4.9E-16 89.1 6.9 60 190-252 3-62 (79)
18 KOG3193|consensus 98.9 7.3E-09 1.6E-13 97.8 8.6 155 69-246 90-249 (1087)
19 PLN03223 Polycystin cation cha 98.7 1.1E-06 2.5E-11 91.4 20.1 78 149-227 1297-1374(1634)
20 KOG3684|consensus 98.6 2.1E-06 4.6E-11 80.1 16.2 61 186-246 258-319 (489)
21 PF08016 PKD_channel: Polycyst 98.2 8.9E-05 1.9E-09 72.1 16.6 171 76-249 218-403 (425)
22 KOG4404|consensus 98.1 1.8E-06 3.9E-11 77.1 3.3 27 213-239 185-211 (350)
23 KOG1418|consensus 98.0 2.8E-05 6.1E-10 75.4 8.8 39 208-246 109-147 (433)
24 PF01007 IRK: Inward rectifier 97.9 2.5E-05 5.4E-10 72.7 6.3 40 211-250 81-122 (336)
25 KOG3599|consensus 97.9 0.00054 1.2E-08 70.6 16.2 168 73-246 470-653 (798)
26 TIGR00870 trp transient-recept 97.5 0.0052 1.1E-07 64.3 17.3 45 70-115 390-434 (743)
27 KOG4404|consensus 97.5 8.2E-05 1.8E-09 66.8 3.1 35 212-246 78-112 (350)
28 KOG1418|consensus 96.7 5.8E-05 1.3E-09 73.2 -5.9 31 213-243 241-271 (433)
29 KOG3609|consensus 96.5 0.18 3.9E-06 51.5 16.7 39 80-119 395-433 (822)
30 KOG3614|consensus 96.2 0.031 6.8E-07 59.4 10.2 50 72-121 825-880 (1381)
31 KOG2572|consensus 95.7 0.05 1.1E-06 50.6 7.9 27 216-242 320-347 (498)
32 KOG0510|consensus 95.7 0.47 1E-05 48.4 15.1 118 95-226 587-704 (929)
33 KOG3533|consensus 95.4 0.83 1.8E-05 49.1 16.3 46 159-204 2399-2444(2706)
34 KOG3827|consensus 95.0 0.051 1.1E-06 50.5 5.9 51 188-238 72-136 (400)
35 PRK00247 putative inner membra 94.4 4.2 9.2E-05 39.3 17.3 14 217-230 251-264 (429)
36 KOG2573|consensus 94.0 0.15 3.3E-06 47.5 6.4 28 217-244 335-363 (498)
37 KOG3676|consensus 93.9 8.9 0.00019 39.5 18.9 61 179-239 540-613 (782)
38 PLN03223 Polycystin cation cha 91.2 10 0.00022 41.6 15.9 49 71-119 1178-1230(1634)
39 PF00520 Ion_trans: Ion transp 90.9 5.7 0.00012 33.3 12.1 25 68-92 30-54 (200)
40 KOG2573|consensus 89.6 0.089 1.9E-06 49.0 -0.4 14 75-88 167-180 (498)
41 COG4499 Predicted membrane pro 88.6 0.68 1.5E-05 43.2 4.5 8 232-239 272-279 (434)
42 KOG3713|consensus 87.9 15 0.00032 35.9 13.1 59 30-93 239-297 (477)
43 PRK00247 putative inner membra 87.7 17 0.00036 35.3 13.5 16 106-121 106-121 (429)
44 PLN03192 Voltage-dependent pot 87.2 11 0.00024 40.1 13.3 20 145-164 172-191 (823)
45 PF07946 DUF1682: Protein of u 86.7 2.4 5.2E-05 39.6 7.2 6 108-113 93-98 (321)
46 KOG1545|consensus 86.3 4.1 8.8E-05 37.9 8.0 38 143-181 319-356 (507)
47 KOG3599|consensus 85.8 25 0.00055 37.1 14.6 26 68-93 497-522 (798)
48 PRK12585 putative monovalent c 85.2 20 0.00043 30.4 10.9 21 182-202 8-28 (197)
49 KOG2412|consensus 80.9 17 0.00036 35.8 10.1 16 104-119 24-39 (591)
50 PF08016 PKD_channel: Polycyst 73.0 34 0.00074 33.2 10.3 22 69-90 242-263 (425)
51 KOG2062|consensus 72.0 4.9 0.00011 41.0 4.1 10 269-278 743-752 (929)
52 PF08412 Ion_trans_N: Ion tran 68.7 5 0.00011 28.8 2.5 33 15-52 36-68 (77)
53 PF05934 MCLC: Mid-1-related c 68.6 1.2E+02 0.0026 29.9 12.3 25 70-94 207-231 (549)
54 COG4499 Predicted membrane pro 68.3 12 0.00026 35.3 5.5 7 233-239 277-283 (434)
55 KOG0163|consensus 65.4 54 0.0012 34.0 9.6 10 113-122 615-624 (1259)
56 KOG4440|consensus 64.5 28 0.0006 35.1 7.4 34 213-246 612-645 (993)
57 COG0168 TrkG Trk-type K+ trans 64.4 1.4E+02 0.0031 29.7 12.6 39 214-252 424-470 (499)
58 KOG1029|consensus 63.3 72 0.0016 33.2 10.1 16 212-227 248-263 (1118)
59 PF10278 Med19: Mediator of RN 56.0 1 2.3E-05 37.6 -3.2 8 232-239 77-84 (178)
60 PTZ00266 NIMA-related protein 53.3 1.3E+02 0.0028 32.9 10.7 10 107-116 224-233 (1021)
61 TIGR00933 2a38 potassium uptak 52.8 2.2E+02 0.0047 27.3 12.8 39 213-251 347-388 (390)
62 KOG4043|consensus 51.9 9.6 0.00021 31.1 1.7 18 222-239 96-113 (214)
63 smart00786 SHR3_chaperone ER m 49.6 14 0.00031 31.5 2.4 15 212-226 90-104 (196)
64 PF00060 Lig_chan: Ligand-gate 49.6 6.5 0.00014 31.6 0.4 37 213-250 43-79 (148)
65 PF05262 Borrelia_P83: Borreli 48.4 1.3E+02 0.0028 29.9 9.0 8 82-89 35-42 (489)
66 PF05297 Herpes_LMP1: Herpesvi 47.9 6.1 0.00013 35.5 0.0 20 33-52 27-46 (381)
67 PTZ00266 NIMA-related protein 47.1 1.4E+02 0.0031 32.6 9.9 11 77-87 124-134 (1021)
68 PRK10750 potassium transporter 46.0 91 0.002 31.0 7.8 39 214-252 421-465 (483)
69 KOG2002|consensus 42.3 33 0.00071 36.4 4.2 8 233-240 744-751 (1018)
70 KOG2357|consensus 42.1 1.9E+02 0.0042 27.7 8.8 22 72-94 107-128 (440)
71 COG5269 ZUO1 Ribosome-associat 41.6 2.2E+02 0.0048 25.7 8.5 30 81-115 22-51 (379)
72 COG1226 Kch Kef-type K+ transp 37.4 14 0.00029 31.1 0.5 35 212-246 115-149 (212)
73 PF10329 DUF2417: Region of un 37.1 3E+02 0.0065 24.4 14.4 14 75-88 105-118 (232)
74 KOG0498|consensus 36.3 5.4E+02 0.012 27.1 13.2 25 144-168 201-225 (727)
75 TIGR00870 trp transient-recept 36.1 5.4E+02 0.012 27.0 13.3 30 174-203 499-529 (743)
76 PF12271 Chs3p: Chitin synthas 35.8 3.5E+02 0.0076 24.9 14.9 10 213-222 250-259 (293)
77 PRK05482 potassium-transportin 34.0 4.2E+02 0.0091 26.9 10.2 40 213-252 450-491 (559)
78 PF05262 Borrelia_P83: Borreli 33.5 2.7E+02 0.006 27.6 8.8 7 214-220 122-128 (489)
79 PF09591 DUF2463: Protein of u 32.4 3E+02 0.0065 23.9 7.8 26 96-121 119-145 (210)
80 KOG2927|consensus 32.2 1.6E+02 0.0034 27.7 6.5 34 26-59 183-216 (372)
81 TIGR00933 2a38 potassium uptak 31.1 1.1E+02 0.0024 29.3 5.8 37 213-249 230-268 (390)
82 KOG3598|consensus 30.1 3.3 7.1E-05 45.2 -5.1 6 269-274 1683-1688(2220)
83 PF10147 CR6_interact: Growth 29.4 3.9E+02 0.0084 23.4 9.2 9 231-239 69-77 (217)
84 KOG2062|consensus 28.8 18 0.00039 37.1 -0.1 9 227-235 616-624 (929)
85 PF10097 DUF2335: Predicted me 27.8 78 0.0017 20.5 2.8 30 230-260 8-37 (50)
86 KOG1277|consensus 27.7 6.1E+02 0.013 25.1 10.9 42 2-52 349-390 (593)
87 COG4744 Uncharacterized conser 27.6 1.8E+02 0.0038 22.4 4.9 46 9-54 5-50 (121)
88 PRK04195 replication factor C 27.3 22 0.00047 35.3 0.2 10 231-240 323-332 (482)
89 PHA02680 ORF090 IMV phosphoryl 26.7 2.2E+02 0.0047 20.9 5.0 14 230-243 68-81 (91)
90 KOG1608|consensus 26.4 4.8E+02 0.01 24.0 8.3 12 224-235 267-278 (374)
91 TIGR01257 rim_protein retinal- 26.0 4.6E+02 0.01 31.7 10.1 26 182-207 836-861 (2272)
92 KOG3598|consensus 25.9 6.2 0.00013 43.2 -4.0 10 12-21 1402-1411(2220)
93 KOG1054|consensus 24.5 48 0.001 33.3 1.9 32 214-246 595-626 (897)
94 KOG1052|consensus 24.3 1.3E+02 0.0028 31.2 5.1 35 214-249 381-415 (656)
95 PF02386 TrkH: Cation transpor 21.8 2.5E+02 0.0054 26.5 6.2 38 215-252 295-338 (354)
96 COG3817 Predicted membrane pro 21.4 1.7E+02 0.0038 26.2 4.5 34 212-246 30-63 (313)
97 PF07077 DUF1345: Protein of u 21.3 5E+02 0.011 21.9 11.6 38 209-246 127-164 (180)
98 KOG4016|consensus 20.9 5.6E+02 0.012 22.3 10.5 25 95-119 16-40 (233)
99 KOG2568|consensus 20.5 8.7E+02 0.019 24.3 16.2 13 148-160 361-373 (518)
100 PF13937 DUF4212: Domain of un 20.4 3.1E+02 0.0068 19.8 5.0 15 211-225 40-54 (81)
101 smart00435 TOPEUc DNA Topoisom 20.2 5E+02 0.011 25.0 7.6 19 272-290 264-283 (391)
102 PRK11281 hypothetical protein; 20.0 1.2E+03 0.027 26.0 16.8 15 78-92 586-600 (1113)
No 1
>KOG3713|consensus
Probab=100.00 E-value=5.8e-45 Score=336.98 Aligned_cols=228 Identities=52% Similarity=0.913 Sum_probs=210.6
Q ss_pred HHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCC----------CCCCChhHHHHHHHH
Q psy6333 9 IRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAG----------NPIDNPKLAIVEAVC 78 (371)
Q Consensus 9 ~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~i~ 78 (371)
+|+++|.++++|+||.+ +++|...++++|+++++.+++.+.|+++.....+ .+..++.+.++|.+|
T Consensus 174 ~r~rlW~~~E~P~SS~~----Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vC 249 (477)
T KOG3713|consen 174 LRRRLWALLENPGSSLA----AKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVC 249 (477)
T ss_pred HHHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHH
Confidence 78999999999999999 9999999999999999999999999998876443 445578899999999
Q ss_pred HHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy6333 79 ITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 158 (371)
Q Consensus 79 ~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri 158 (371)
.++|++|+++|+..++++.+|++++.|+||+++++|+++.+........ .+..+..++.++|++|++|++|+
T Consensus 250 i~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~--------~~~~l~~~~~vvrvlR~lRI~RI 321 (477)
T KOG3713|consen 250 IAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGE--------SLKELENAGLVVRVLRVLRILRI 321 (477)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc--------hHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887544421 23456666788999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCC
Q psy6333 159 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238 (371)
Q Consensus 159 ~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t 238 (371)
+|+.||+.+++.+..+++.|.++++++++++.+.+.+||.+.|++|.+.+...|++.+.++||+++|||||||||++|.|
T Consensus 322 ~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T 401 (477)
T KOG3713|consen 322 FKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVT 401 (477)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhHH
Q psy6333 239 PLGKMIGSNQ 248 (371)
Q Consensus 239 ~~~~~~~~~~ 248 (371)
..|++++...
T Consensus 402 ~~Gklvas~c 411 (477)
T KOG3713|consen 402 VLGKLVASLC 411 (477)
T ss_pred cchHHHHHHH
Confidence 9999999833
No 2
>KOG1545|consensus
Probab=100.00 E-value=8.6e-42 Score=301.30 Aligned_cols=238 Identities=41% Similarity=0.701 Sum_probs=206.5
Q ss_pred ccchhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCC-------------C-------
Q psy6333 4 YSHIDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKA-------------G------- 63 (371)
Q Consensus 4 ~~~~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~-------------~------- 63 (371)
.++.+.++.+|.+++.|.||.+ .+...++++++|+++++.+|+++.|++....+. +
T Consensus 168 lP~n~fqRqvWlLfEYPeSS~~----AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~ 243 (507)
T KOG1545|consen 168 LPRNEFQRQVWLLFEYPESSGP----ARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPEL 243 (507)
T ss_pred CCcchHHhhhhheeecccccCC----eeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccc
Confidence 4677889999999999999999 999999999999999999999999998765110 0
Q ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhh
Q psy6333 64 ----NPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQ 139 (371)
Q Consensus 64 ----~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~ 139 (371)
...-...+.++|..|.++|++|+++||.+++.+..|+++..|++|+++++|+++.+..........++.++..
T Consensus 244 ~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqa--- 320 (507)
T KOG1545|consen 244 LDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQA--- 320 (507)
T ss_pred ccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhh---
Confidence 1112356789999999999999999999999999999999999999999999998866433221111111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHH
Q psy6333 140 FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETF 219 (371)
Q Consensus 140 ~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (371)
..+.++|++|++|++|++++.|++.+++.+.+++..+++.++++++++++.+++|+...|+.|.+++.+.|.+.++||
T Consensus 321 --MSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaF 398 (507)
T KOG1545|consen 321 --MSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAF 398 (507)
T ss_pred --hhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccc
Confidence 123689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 220 WWAGITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 220 y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
||+++|||||||||+.|.|..|++++....+
T Consensus 399 WwavVTMTTVGYGDm~P~TvgGKIVGslCAi 429 (507)
T KOG1545|consen 399 WWAVVTMTTVGYGDMVPVTVGGKIVGSLCAI 429 (507)
T ss_pred eEEEEEEEeeccccceecccCceehhhHHhh
Confidence 9999999999999999999999999985555
No 3
>KOG4390|consensus
Probab=99.97 E-value=8.7e-33 Score=246.62 Aligned_cols=222 Identities=35% Similarity=0.670 Sum_probs=196.6
Q ss_pred ccchhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccC-----CCCCCCCChhHHHHHHHH
Q psy6333 4 YSHIDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKD-----KAGNPIDNPKLAIVEAVC 78 (371)
Q Consensus 4 ~~~~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~i~ 78 (371)
..-+.+||++|.-++||+++.. ..+|+++..++|.+++++-+.+++|.-.... .|+.. ....+..+|..|
T Consensus 162 p~~ls~rq~mWrAFENPHTst~----ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEr-y~~aFFclDTAC 236 (632)
T KOG4390|consen 162 PAGLSLRQRMWRAFENPHTSTA----ALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGER-YPVAFFCLDTAC 236 (632)
T ss_pred cccchHHHHHHHHhcCCCcchh----hhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccc-cceeeEEeccee
Confidence 3458899999999999999998 9999999999999999999999988754433 22322 245667899999
Q ss_pred HHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy6333 79 ITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 158 (371)
Q Consensus 79 ~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri 158 (371)
..+|+.|++||+++++.|.+|+++...++|+++++|+++.++......- ...+--+|++|++|+
T Consensus 237 VmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DV----------------SGaFVTLRVFRVFRI 300 (632)
T KOG4390|consen 237 VMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDV----------------SGAFVTLRVFRVFRI 300 (632)
T ss_pred EEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccc----------------cceeEEEEeeeeeee
Confidence 9999999999999999999999999999999999999998876543321 123445788889999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCC
Q psy6333 159 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238 (371)
Q Consensus 159 ~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t 238 (371)
++..|+.++++.+..++.++...++.+++-+.+.+++||+++|+.|.+.+.+.|++.+.|||++++||||.||||++|.|
T Consensus 301 FKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~T 380 (632)
T KOG4390|consen 301 FKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPST 380 (632)
T ss_pred eeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHh
Q psy6333 239 PLGKMIGS 246 (371)
Q Consensus 239 ~~~~~~~~ 246 (371)
.+|++|+.
T Consensus 381 IaGKIfGs 388 (632)
T KOG4390|consen 381 IAGKIFGS 388 (632)
T ss_pred HHHHHhhh
Confidence 99999988
No 4
>KOG1419|consensus
Probab=99.95 E-value=2.1e-27 Score=220.92 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=171.3
Q ss_pred HHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy6333 9 IRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLL 88 (371)
Q Consensus 9 ~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~l 88 (371)
+|-++++.+|.|.--- +.++..+++++++.++++-++.+.+++.... ..++.++|+++.++|.+||++
T Consensus 77 ~q~~vYN~LERPrGWk-----af~YH~~VFllVl~CLILsV~STi~e~~~~a-------~~~L~~LEiv~IV~Fg~Efiv 144 (654)
T KOG1419|consen 77 IQNKVYNFLERPRGWK-----AFLYHFFVFLLVLSCLILSVLSTIEEYEKLA-------SGILYILEIVMIVFFGLEFIV 144 (654)
T ss_pred HHHHHHHHHhCCCcch-----HHHHHHHHHHHHHHHHHHHHhcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999996543 6678888888888899988999988876655 678999999999999999999
Q ss_pred Hhhcccc---------hhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy6333 89 RLGASPE---------KWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRIL 159 (371)
Q Consensus 89 r~~~~~~---------~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~ 159 (371)
|+|++++ |.+|.+.++.+||+++++..+..+.... .++..++ ..++-+|.++++|++
T Consensus 145 RlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~-----qG~vfat---------SalrslRFlQILRml 210 (654)
T KOG1419|consen 145 RLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGS-----QGNVFAT---------SALRSLRFLQILRML 210 (654)
T ss_pred HHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecC-----ccceeeh---------hhhhhhHHHHHHHHH
Confidence 9999985 4568889999999998888765444321 1111111 236778888888888
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----CCCCCcCChhhHHHHhhhhhcccccCCcc
Q psy6333 160 KLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD----EHDTKFVSIPETFWWAGITMTTVGYGDIC 235 (371)
Q Consensus 160 ~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~y~~~~t~tTvGyGdi~ 235 (371)
++-|....|+.+...+...-.++.....+-+++.++.+.+.|+.|.+ +.+..|.+|.||+||.++|+|||||||.+
T Consensus 211 r~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~ 290 (654)
T KOG1419|consen 211 RMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKT 290 (654)
T ss_pred HhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcC
Confidence 88888888988888888777777777666676677777888888766 34567999999999999999999999999
Q ss_pred cCCcchhhHHh
Q psy6333 236 PTTPLGKMIGS 246 (371)
Q Consensus 236 p~t~~~~~~~~ 246 (371)
|+|+.||+++.
T Consensus 291 P~TWlGr~laa 301 (654)
T KOG1419|consen 291 PQTWLGRLLAA 301 (654)
T ss_pred cccchhHHHHH
Confidence 99999999887
No 5
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=2.6e-24 Score=223.88 Aligned_cols=207 Identities=15% Similarity=0.220 Sum_probs=135.2
Q ss_pred HhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcc
Q psy6333 14 ATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGAS 93 (371)
Q Consensus 14 ~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~ 93 (371)
+..+-+|.+++ .++|+++++++++++.+.+.++........ ...+.+++.+++++|++|++++|+++
T Consensus 50 ~~~ii~P~~~~-----~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~--------~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 50 DGWIISPMDSR-----YRWWETLMVVLVAYSAWVYPFEVAFLNASP--------KRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred CCeEECCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHeeCCCC--------CCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 34567787776 678888888888888888766653221111 23467899999999999999999988
Q ss_pred c--------------chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy6333 94 P--------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRIL 159 (371)
Q Consensus 94 ~--------------~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~ 159 (371)
+ ...+|+++ |+++|+++++|+.+......... .....+.+++++|++|+.|+.
T Consensus 117 y~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~------------~~~~~~~~l~llrl~Rl~ri~ 183 (823)
T PLN03192 117 YIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTV------------KLNLSYSLLGLLRFWRLRRVK 183 (823)
T ss_pred EEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCc------------cchHHHHHHHHHHHHHHHHHH
Confidence 4 14589877 78999999999976544322111 111112233344444443333
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---CCC-------------CCcCChhhHHHHhh
Q psy6333 160 KLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD---EHD-------------TKFVSIPETFWWAG 223 (371)
Q Consensus 160 ~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~s~y~~~ 223 (371)
++ +..++.... +......+..++++++++++++||++|++... .+. +++..|..|+||++
T Consensus 184 ~~---~~~le~~~~-~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai 259 (823)
T PLN03192 184 QL---FTRLEKDIR-FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSI 259 (823)
T ss_pred HH---HHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHH
Confidence 33 333332211 11112234445556666788899999876532 111 22335888999999
Q ss_pred hhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 224 ITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 224 ~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
+|||||||||++|.|+.|+++++..|.
T Consensus 260 ~TmtTVGYGDi~p~t~~E~i~~i~~ml 286 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEMIFIIFYML 286 (823)
T ss_pred HHHhhccCCCcCCCccchHHHHHHHHH
Confidence 999999999999999999999994443
No 6
>KOG0498|consensus
Probab=99.88 E-value=1.9e-21 Score=192.47 Aligned_cols=218 Identities=15% Similarity=0.170 Sum_probs=140.6
Q ss_pred hcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhccccccccc-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccc-
Q psy6333 17 SNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHK-DKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASP- 94 (371)
Q Consensus 17 ~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~- 94 (371)
.-+|++.+ -+.|+++++++++.+.++..++.+...... ..+-+......+.+++.+.+++|++|++++|.+++
T Consensus 69 Ii~P~s~~-----~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 69 ILDPYSPF-----YRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred eECCCChH-----HHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 56777776 677888877777777777655554332221 11112223467889999999999999999998876
Q ss_pred -------------chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy6333 95 -------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKL 161 (371)
Q Consensus 95 -------------~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l 161 (371)
...+|+++ |+++|+++++|+...+++...... . .+........++.+.|+.|+.|+++
T Consensus 144 ~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~----~---~~~~~~~l~~il~~~rL~Rl~Rv~~- 214 (727)
T KOG0498|consen 144 DPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGST----S---LALESTILVGILLLQRLPRLRRVIP- 214 (727)
T ss_pred CCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeeccc----c---hhhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 24689997 889999999999877665432000 0 0001111123334444444444444
Q ss_pred hhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcccCC------------------CCC----cC-----
Q psy6333 162 ARHSTGLQSLGFTLRNSYKE-LGLLMLFLAMGVLIFSSLAYFAEKDEH------------------DTK----FV----- 213 (371)
Q Consensus 162 ~~~~~~l~~l~~~l~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~----~~----- 213 (371)
.+..+.........+.-. ...++++.++..|+.||++|++....+ ..+ |.
T Consensus 215 --l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~ 292 (727)
T KOG0498|consen 215 --LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLA 292 (727)
T ss_pred --HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHH
Confidence 444444443333322222 446677777788999999997632211 001 11
Q ss_pred -ChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 214 -SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 214 -~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
.|..|+||+++||||+||||.+|.++.|++|++..|.
T Consensus 293 ~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi 330 (727)
T KOG0498|consen 293 LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIML 330 (727)
T ss_pred HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHH
Confidence 3789999999999999999999999999999994444
No 7
>KOG0501|consensus
Probab=99.86 E-value=2.1e-21 Score=181.87 Aligned_cols=246 Identities=18% Similarity=0.277 Sum_probs=161.3
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccc---------
Q psy6333 24 VSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASP--------- 94 (371)
Q Consensus 24 ~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~--------- 94 (371)
+.|-....+|+|+++++.+...+...++. .|.... .....+.+++.+++++|++|++|+|.+..
T Consensus 211 LHYcaFKt~WDWvIL~LTFYTAimVPyNv--aFKnk~-----~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvs 283 (971)
T KOG0501|consen 211 LHYCAFKTIWDWVILILTFYTAIMVPYNV--AFKNKQ-----RNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVS 283 (971)
T ss_pred EeeehhhhHHHHHHHHHHHHHHheeeeee--eecccc-----cCceeEEEecchhhhhhhhhhhhhcceeeecCCCceec
Confidence 34444577888888877777666554443 222211 11355778999999999999999997753
Q ss_pred ----chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6333 95 ----EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQS 170 (371)
Q Consensus 95 ----~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~ 170 (371)
.|.+|+++ |+++|+++.+|+.+...+-....+ .. .++..++++|++|+-|..|.....-
T Consensus 284 dPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~deg------------I~---SLFSaLKVVRLLRLGRVaRKLD~Yl- 346 (971)
T KOG0501|consen 284 DPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEG------------IG---SLFSALKVVRLLRLGRVARKLDHYL- 346 (971)
T ss_pred ChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhccccc------------HH---HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 47899999 889999999999987776443322 11 2233333333333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC--------------------------------------CCCCc
Q psy6333 171 LGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE--------------------------------------HDTKF 212 (371)
Q Consensus 171 l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~ 212 (371)
......+.+++.+..++.+..||+||.+...+ +++.-
T Consensus 347 -----EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~ 421 (971)
T KOG0501|consen 347 -----EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRT 421 (971)
T ss_pred -----HhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCccc
Confidence 22233455566666777788899998764311 12223
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHHHHHHHHHHHHHHhhCCCeEEeccc--chhhHhhhhchhhH
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHV--NLRDAFAKSMDLID 290 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 290 (371)
.-|..|+||++..|||||||+|.|.|..+++|++..|... ++..+.--||+....++ .-.+.|.+-.++++
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~-------aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVR 494 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIG-------ALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVR 494 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999876 44444444554332221 11233444448888
Q ss_pred HHHHHHHHHHHHHHH
Q psy6333 291 VIVDTEILIREKRER 305 (371)
Q Consensus 291 ~~~~~~~~~~~~~~~ 305 (371)
.+......|+...++
T Consensus 495 eFlKL~evPK~LsER 509 (971)
T KOG0501|consen 495 EFLKLYEVPKGLSER 509 (971)
T ss_pred HHHHHHhccHHHHHH
Confidence 888888888877666
No 8
>KOG1420|consensus
Probab=99.76 E-value=5.3e-20 Score=172.28 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhhcccccccccC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHH
Q psy6333 36 ISIMFIVLSTVALTLNTIPSLQHKD-KAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMP 114 (371)
Q Consensus 36 ~~~~liil~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip 114 (371)
+++++.++++-.+++++++...... .|..|.. ..-+.++..|+++|++.+++||+++.++.-||.....++|++.+-|
T Consensus 129 lvvlvfilsigsliiyf~das~~~ve~cq~w~~-~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftipp 207 (1103)
T KOG1420|consen 129 LVVLVFILSIGSLIIYFIDASNPIVETCQNWYK-DFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPP 207 (1103)
T ss_pred eehhHHHHhhhceEEEEEcCCChHHHhhhhhhh-ChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCc
Confidence 3455566666667777765554433 3555553 4456789999999999999999999999889998889999999999
Q ss_pred HHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6333 115 YYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVL 194 (371)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~ 194 (371)
.++.+++..+ +..+|++|.+|++.+-.++++...+.. .++++...++.+++. +++
T Consensus 208 sfvsiyl~r~-------------------wlglrflralrlmtvpdilqylnilkt-----sssirl~qlvsifis-vwl 262 (1103)
T KOG1420|consen 208 SFVSIYLNRS-------------------WLGLRFLRALRLMTVPDILQYLNILKT-----SSSIRLVQLVSIFIS-VWL 262 (1103)
T ss_pred hheEEEeccc-------------------hHHHHHHHHHHhccHHHHHHHHHHHhc-----cchhhHHHHHHHHHH-HHH
Confidence 9987765322 234666666666555555443322221 223333333444443 344
Q ss_pred HHHHHhhhhcccCC-CC-----CcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHH------HHHHHHHH---
Q psy6333 195 IFSSLAYFAEKDEH-DT-----KFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRR------EKALKRRE--- 259 (371)
Q Consensus 195 ~~~~~~~~~~~~~~-~~-----~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~------~~~~~~~~--- 259 (371)
-.|++.+++|+.++ .. .--+|+++.|+.++||+||||||+...|..||+|-+.+... ..-.+..+
T Consensus 263 taag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 263 TAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred hhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 55667777765432 22 23479999999999999999999999999999988844332 22111111
Q ss_pred -------HHHHHhhCCCeEEecccc
Q psy6333 260 -------AMERAKREGSIVSFHHVN 277 (371)
Q Consensus 260 -------~~~~~~~~~~~~~~~~~~ 277 (371)
.........|+++||+..
T Consensus 343 nr~kyggeyk~ehgkkhivvcghit 367 (1103)
T KOG1420|consen 343 NRKKYGGEYKAEHGKKHIVVCGHIT 367 (1103)
T ss_pred cccccCceeehhcCCeeEEEeccee
Confidence 111123467999999854
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.69 E-value=2.3e-16 Score=136.50 Aligned_cols=160 Identities=29% Similarity=0.458 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-hhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy6333 73 IVEAVCITWFSVEYLLRLGASPE-KWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFR 151 (371)
Q Consensus 73 ~i~~i~~~iF~~d~~lr~~~~~~-~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 151 (371)
++|.+++++|++|+++++++.+. +.+|++++||++|+++++|.++.......+..+ .. ..++++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~ 66 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----------AQ---SLLRIFR 66 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----------HC---HCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----------cc---ceEEEEE
Confidence 57899999999999999998885 379999999999999999997776654332210 00 2355666
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC----------------CCCCcCCh
Q psy6333 152 IMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE----------------HDTKFVSI 215 (371)
Q Consensus 152 llRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 215 (371)
++|++|++++.+..+.++.+...+..+.+.+..++++++++++.+|++++...+.. +.+.+++|
T Consensus 67 ~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~ 146 (200)
T PF00520_consen 67 LLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSF 146 (200)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSH
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccc
Confidence 66666666666667777777777788888888888888888899999888654332 23456789
Q ss_pred hhHHHHhhhhhcccccCCcccC-----CcchhhHHh
Q psy6333 216 PETFWWAGITMTTVGYGDICPT-----TPLGKMIGS 246 (371)
Q Consensus 216 ~~s~y~~~~t~tTvGyGdi~p~-----t~~~~~~~~ 246 (371)
..|+||++.++||.||||+.|. +..+.++.+
T Consensus 147 ~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T PF00520_consen 147 GESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFI 182 (200)
T ss_dssp HHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHH
T ss_pred cccccccccccccCCccccccccccccchhHhHHhh
Confidence 9999999999999999999998 777777775
No 10
>KOG2301|consensus
Probab=99.63 E-value=1.2e-15 Score=162.50 Aligned_cols=189 Identities=22% Similarity=0.326 Sum_probs=154.6
Q ss_pred ccchhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHH
Q psy6333 4 YSHIDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFS 83 (371)
Q Consensus 4 ~~~~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~ 83 (371)
..+.+.+++++..+.+|. +++.+++++++|++++.++++++..... ..+.+.+.++.++|+
T Consensus 427 ~~~~~~~~~~~~~v~~~~-----------~~~~i~i~i~lnt~~~a~eh~~~~~~~~--------~~l~~~~~vF~~lF~ 487 (1592)
T KOG2301|consen 427 PIWLKFKQWLRKMVFDPF-----------VILFITICIALNTLFMAMEHYEMTKARN--------YLLYLGNVVFTGLFT 487 (1592)
T ss_pred hHHHHHHHHHHHhhhcce-----------ehhhhHHHHhhcccEEEEEEeCCcHHHH--------HHHHHHHHHHHHHHH
Confidence 456777888888866663 4566999999999999999998876654 788999999999999
Q ss_pred HHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy6333 84 VEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLAR 163 (371)
Q Consensus 84 ~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~ 163 (371)
.|+.+++++-+. ..|+++.||++|++.++-.++... .. ....+.++|++|++|++|+.+
T Consensus 488 ~Em~~ki~al~~-~~yF~~~~n~fD~~iv~l~~~~~~---~~-----------------~~~g~svLr~frllRIfkl~k 546 (1592)
T KOG2301|consen 488 VEMILKIYALGP-RNYFRRGWNIFDLIIVLLSLLELL---LK-----------------NVYGLSVLRSFRLLRIFKLIK 546 (1592)
T ss_pred HHHHHHHHHcCc-HHHHhhhcchheEEEEehhhHHhc---cc-----------------chHHHHHHHHHHHHHHHHHHH
Confidence 999999887665 589999999999999982222222 11 114588999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-C-----CcCChhhHHHHhhhhhcccccCC
Q psy6333 164 HSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHD-T-----KFVSIPETFWWAGITMTTVGYGD 233 (371)
Q Consensus 164 ~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~s~y~~~~t~tTvGyGd 233 (371)
++..++.+...+.++...++.+++++++++++||.+++.+.++..+ . ++.+++.||-+.++ +|+-+|-|
T Consensus 547 ~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~e 621 (1592)
T KOG2301|consen 547 SWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTD 621 (1592)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHH
Confidence 9999999999999999999999999999999999999976554322 2 67789999999998 66655554
No 11
>KOG0500|consensus
Probab=99.62 E-value=5.6e-15 Score=137.16 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=128.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhccc------------chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhh
Q psy6333 68 NPKLAIVEAVCITWFSVEYLLRLGASP------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQT 135 (371)
Q Consensus 68 ~~~~~~i~~i~~~iF~~d~~lr~~~~~------------~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~ 135 (371)
...|..+|++++++|++|++++..+.+ -+.+|+.+..+.+|+++++|..+.++.....
T Consensus 28 ~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~~---------- 97 (536)
T KOG0500|consen 28 LENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGSA---------- 97 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCcc----------
Confidence 456789999999999999999987765 2569999999999999999999888775433
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----C---
Q psy6333 136 RTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD-----E--- 207 (371)
Q Consensus 136 ~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----~--- 207 (371)
...|+.|++|+.|++.......+-... -.+..+..++..+++++|..||+.|.+-.. +
T Consensus 98 ---------~~~r~nRllk~yRl~~F~~rTetrT~~-----Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wv 163 (536)
T KOG0500|consen 98 ---------SLERLNRLLKIYRLFEFFDRTETRTTY-----PNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWV 163 (536)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhccccCC-----chHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccc
Confidence 123445555555544443332221111 112233445556666778888888754211 0
Q ss_pred ----CCC---------CcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHHHHHHHHHHHHHHhhCCCeEEe-
Q psy6333 208 ----HDT---------KFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKREGSIVSF- 273 (371)
Q Consensus 208 ----~~~---------~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (371)
.+. -...|..|+||+..|+||+| --..|.|..+.+|.+.....+ -+..+--.|++-..
T Consensus 164 Y~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiG-------vliFAtIvG~VGsmV 235 (536)
T KOG0500|consen 164 YPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIG-------VLIFATIVGNVGSMV 235 (536)
T ss_pred cCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHH-------HHHHhhhhccHhHHH
Confidence 011 11248899999999999999 567899999999988544433 11111111111000
Q ss_pred cccc-hhhHhhhhchhhHHHHHHHHHHHHHHHH
Q psy6333 274 HHVN-LRDAFAKSMDLIDVIVDTEILIREKRER 305 (371)
Q Consensus 274 ~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (371)
.+.+ .+..|...||.+...+.....++.-+.+
T Consensus 236 tnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~r 268 (536)
T KOG0500|consen 236 TNMNAARTEFQAKMDGIKQYMRYRKVPKALQTR 268 (536)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1122 2444566677777777766666655444
No 12
>KOG2302|consensus
Probab=99.59 E-value=2.5e-14 Score=141.18 Aligned_cols=157 Identities=21% Similarity=0.313 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccc---chhhhhcccchh
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASP---EKWKFFKGGLNV 106 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~---~~~~y~~~~~~~ 106 (371)
+..|+.+++++|++|++.++++....-....+ ...+..-+++|.++|..|+.+++.+.+ .-..|+++.||.
T Consensus 1123 hk~Fd~vVl~~IfLNcVtialerp~i~~~s~E------riFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~ 1196 (1956)
T KOG2302|consen 1123 HKAFDTVVLFFIFLNCVTIALERPAIVEGSTE------RIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNV 1196 (1956)
T ss_pred HhhhhheehhhhhhhhHHHHhcccccccCcce------EEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHh
Confidence 67799999999999999999998654433320 123344559999999999999998766 345899999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6333 107 IDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLM 186 (371)
Q Consensus 107 iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~ 186 (371)
+|.+.++...+.+.....+. ...+++.++|++|++|-+|.+|.+....+++.+..++.++++.++.++
T Consensus 1197 LDgflv~vsviDilvs~asa------------~g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIv 1264 (1956)
T KOG2302|consen 1197 LDGFLVAVSVIDILVSQASA------------GGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIV 1264 (1956)
T ss_pred hhHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHH
Confidence 99999999988887755432 245677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q psy6333 187 LFLAMGVLIFSSLAYFAE 204 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~ 204 (371)
++.+.++++|+.++..+.
T Consensus 1265 liccaffiiFgilgvqLF 1282 (1956)
T KOG2302|consen 1265 LICCAFFIIFGILGVQLF 1282 (1956)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998886543
No 13
>KOG2301|consensus
Probab=99.46 E-value=3.7e-13 Score=143.92 Aligned_cols=185 Identities=20% Similarity=0.324 Sum_probs=148.7
Q ss_pred hhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Q psy6333 7 IDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEY 86 (371)
Q Consensus 7 ~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~ 86 (371)
.+.|.+.+++ +. ++.|++.+.++++++++.++++++++..... ..+.+++.++.++|++|.
T Consensus 1144 ~~~q~~~~~~-------v~----~~~F~~~i~~li~ln~i~l~~~~~~qs~~~~--------~~l~~in~vft~~Ft~E~ 1204 (1592)
T KOG2301|consen 1144 NKLQGLVFDL-------VT----SQAFDYLIMLLIFLNTIIMMVETYDQSDTYT--------AILTILNAVFIVLFTIEC 1204 (1592)
T ss_pred chhhhHHHHH-------Hh----hhHHHHHHHHHHHHHHHHHHHhhccchHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 4566777777 33 5669999999999999999999998877655 688999999999999999
Q ss_pred HHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6333 87 LLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHST 166 (371)
Q Consensus 87 ~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~ 166 (371)
++++++... ..|+++.||++|+++++.+++..++...... +.......++.|++|+.|++++.+...
T Consensus 1205 vLKiiA~~~-~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------~~~~~~~~~~~rl~rV~R~l~Li~~~~ 1271 (1592)
T KOG2301|consen 1205 ILKVIALRF-RGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------YESSPTLLRFLRLFRVGRFLRLIPQAK 1271 (1592)
T ss_pred HHHHHHhhh-hHhccccchheEeeeeeHhHHHHHHHHHHHh------------hccchhhHHHHHHHHHHHHHHhccccc
Confidence 999886643 5899999999999999998887776543311 000113578999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------cCCCCCcCChhhHHHHhh
Q psy6333 167 GLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEK------DEHDTKFVSIPETFWWAG 223 (371)
Q Consensus 167 ~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~y~~~ 223 (371)
+++.+..++..|++.+..+.++++++.++||.+|....+ -++..+|.++..|+---+
T Consensus 1272 ~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LF 1334 (1592)
T KOG2301|consen 1272 TIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDHNNFRTFPNSMVVLF 1334 (1592)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccccCCCcccccchhheeeee
Confidence 999999999999999999999999999999998875432 235566777776664333
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.46 E-value=1.3e-12 Score=123.81 Aligned_cols=97 Identities=19% Similarity=0.320 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhh-hcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHH------------------
Q psy6333 189 LAMGVLIFSSLAYF-AEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM------------------ 249 (371)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~------------------ 249 (371)
.+..+++++.++++ .+++. .+.+.++.+|+||+++|+|||||||+.|.|..||++++..+
T Consensus 143 ~~~~l~~~~~~g~~~~~~~f-~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 143 SITSLLFYSTFGALYLGDGF-SPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHHHHHHHHHHHcccc-CcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666544 44322 34468999999999999999999999999999999998322
Q ss_pred HHHHHHHHHH-HHHHHhhCCCeEEecccchhhHhhhhc
Q psy6333 250 RREKALKRRE-AMERAKREGSIVSFHHVNLRDAFAKSM 286 (371)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (371)
..+...+..+ ......+++|+++||++++++...+.+
T Consensus 222 i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L 259 (393)
T PRK10537 222 IRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGL 259 (393)
T ss_pred HHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHH
Confidence 1111111111 112223479999999999877775544
No 15
>KOG2302|consensus
Probab=99.40 E-value=2.2e-12 Score=127.84 Aligned_cols=181 Identities=24% Similarity=0.328 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHH
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 109 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDl 109 (371)
+.+.+.++.+++.+|++++..+++.+....+ ..+.+.++.+.++|++|.++++.+++.+ +|++..||-+|+
T Consensus 1440 Shyld~fit~ii~LnvVtms~ehyqqp~sld--------ealkycny~ft~vfV~EaV~klvafG~r-rFfkdrwnqldl 1510 (1956)
T KOG2302|consen 1440 SHYLDQFITFIICLNVVTMSEEHYQQPTSLD--------EALKYCNYRFTAVFVLEAVLKLVAFGER-RFFKDRWNQLDL 1510 (1956)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcccHH--------HHhhhcceeeeehhHHHHHHHHHHHhHH-HHHhhhhhhhhH
Confidence 4568899999999999999999988766554 7899999999999999999999988875 899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6333 110 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFL 189 (371)
Q Consensus 110 i~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~ 189 (371)
-+++-+++.+.+-+...+ +.+.--..++|++|++|+.|++++++.-.+++.+..+..+.+++++++.+++
T Consensus 1511 aivlls~mgitleeie~n----------aalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllf 1580 (1956)
T KOG2302|consen 1511 AIVLLSVMGITLEEIEIN----------AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLF 1580 (1956)
T ss_pred HHHHHHHhcccHhheeec----------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHH
Confidence 999888877766443321 1222223578888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccc-----CC-------CCCcCChhhHHHHhhhhhcccccCC
Q psy6333 190 AMGVLIFSSLAYFAEKD-----EH-------DTKFVSIPETFWWAGITMTTVGYGD 233 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~s~y~~~~t~tTvGyGd 233 (371)
.+++++||.++.-+.+. .+ -.+|.+ |-+++.|+.-|..||
T Consensus 1581 mllffiyaalgvelfg~lec~e~npceglsrhatf~n----fgmafltlfrvstgd 1632 (1956)
T KOG2302|consen 1581 MLLFFIYAALGVELFGKLECNEENPCEGLSRHATFEN----FGMAFLTLFRVSTGD 1632 (1956)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCccccccccchhh----hchHhhhheeeccCC
Confidence 99999999988744322 11 113333 446788888888888
No 16
>KOG0499|consensus
Probab=99.34 E-value=7.3e-11 Score=112.00 Aligned_cols=154 Identities=15% Similarity=0.194 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHH-----Hhhccc--------chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhh
Q psy6333 68 NPKLAIVEAVCITWFSVEYLL-----RLGASP--------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQ 134 (371)
Q Consensus 68 ~~~~~~i~~i~~~iF~~d~~l-----r~~~~~--------~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~ 134 (371)
.+.|.++|++|++++++|+++ +|...+ .+.+|+++.-+-+|+++++|+.+.++..+..
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~--------- 330 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN--------- 330 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc---------
Confidence 467889999999999999986 222222 3679999999999999999998888775443
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC---CC--
Q psy6333 135 TRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE---HD-- 209 (371)
Q Consensus 135 ~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~-- 209 (371)
.+.|+-|++++.-++.+.+ .+..+... ..+..++..+..++..+++-||+.|+...-. .+
T Consensus 331 ----------p~wR~~R~lK~~sF~e~~~---~Le~i~s~--~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rW 395 (815)
T KOG0499|consen 331 ----------PMWRANRMLKYTSFFEFNH---HLESIMSK--AYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRW 395 (815)
T ss_pred ----------hhhhhhhHHHHHHHHHHHH---HHHHHhcc--hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccccccee
Confidence 1223333333222222222 12221111 1112233334444556778888887653211 11
Q ss_pred ---CCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 210 ---TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 210 ---~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
.--..|+.++||++-|++|+| |...|.|..+.+|-.
T Consensus 396 Vydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~ 434 (815)
T KOG0499|consen 396 VYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQL 434 (815)
T ss_pred EEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHH
Confidence 112468999999999999999 999999998887765
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.24 E-value=2.3e-11 Score=89.13 Aligned_cols=60 Identities=30% Similarity=0.531 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 190 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
++.+++++++.+...+ + ....++.+|+||+++|+|||||||+.|.|+.||++++..+...
T Consensus 3 ~~~~l~~~~~~~~~~~--~-~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G 62 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISE--G-SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIG 62 (79)
T ss_dssp HHHHHHHHHHHHHHTT--S-SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHH--h-cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHH
Confidence 3445556666665521 1 2258999999999999999999999999999999999666543
No 18
>KOG3193|consensus
Probab=98.87 E-value=7.3e-09 Score=97.78 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccc--chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHH
Q psy6333 69 PKLAIVEAVCITWFSVEYLLRLGASP--EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRV 146 (371)
Q Consensus 69 ~~~~~i~~i~~~iF~~d~~lr~~~~~--~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (371)
..+++++..+.++-+..-++-+|.++ .-.+.+.+..++++++..+|+++.++.+...+. +..-|...+
T Consensus 90 ~~iw~lq~~~a~is~~~ti~~~yl~ysgsvvrllinihfllelitsfpfii~ifipsltyl--------yvpvflncw-- 159 (1087)
T KOG3193|consen 90 FKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISIFIPSLTYL--------YVPVFLNCW-- 159 (1087)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHhhcccceeeeecccccee--------echhhhhhh--
Confidence 45667777777777777777777655 344667777889999999999988776543221 001111110
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-hhcccCCCCCcCChhhHHHHhh
Q psy6333 147 VQVFRIMRILRILKLARHSTGLQS-LGFTLRNSYKELGLLMLFLAMGVLIFSS-LAY-FAEKDEHDTKFVSIPETFWWAG 223 (371)
Q Consensus 147 ~~~lrllRllri~~l~~~~~~l~~-l~~~l~~~~~~l~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~s~y~~~ 223 (371)
+.+- .+.-....+.. ....-....+++.++... +.+++|.+ ++. -+... ...-.+.++|+||++
T Consensus 160 --------lakg-alqammndl~r~~~~s~sal~~ql~ll~s~--l~clift~~c~i~h~qra--~~k~i~lf~s~y~v~ 226 (1087)
T KOG3193|consen 160 --------LAKG-ALQAMMNDLNRKSFISSSALFRQLLLLFSV--LACLIFTGMCSIEHLQRA--RGKRIDLFTSFYFVM 226 (1087)
T ss_pred --------hhhh-HHHHhhhhHhHHhhhhHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHc--cCceeeeeeeEEEEE
Confidence 0000 00000011110 001111122233222222 22223321 111 11111 111256778999999
Q ss_pred hhhcccccCCcccCCcchhhHHh
Q psy6333 224 ITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 224 ~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
+|++||||||.+|.-+..++..+
T Consensus 227 vtfstvgygd~~pd~w~sql~~v 249 (1087)
T KOG3193|consen 227 VTFSTVGYGDWYPDYWASQLCVV 249 (1087)
T ss_pred EEEeeccccccccccchhhHHHH
Confidence 99999999999999998887655
No 19
>PLN03223 Polycystin cation channel protein; Provisional
Probab=98.74 E-value=1.1e-06 Score=91.38 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhc
Q psy6333 149 VFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMT 227 (371)
Q Consensus 149 ~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~t 227 (371)
++-+++++|++|++++.+.+..+..++..+.+.++.++++++++++.||.+++++.+... ..|.++..|++-.+..|+
T Consensus 1297 IlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v-e~FSTf~sSL~TLFqMLL 1374 (1634)
T PLN03223 1297 INIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS-VHFSDMTDSINSLFENLL 1374 (1634)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhcCHHHHHHHHHHHHH
Confidence 344566677888888888999999999999999999999999999999999998877654 368899998887777664
No 20
>KOG3684|consensus
Probab=98.61 E-value=2.1e-06 Score=80.13 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCC-CCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 186 MLFLAMGVLIFSSLAYFAEKDEHD-TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
+.+.+.++++.+...-++|..... +.-.+|.+|.|...+|+.++||||++|.|..||.+|+
T Consensus 258 ~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l 319 (489)
T KOG3684|consen 258 LVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVAL 319 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHH
Confidence 333444444444444455543322 2335799999999999999999999999999999988
No 21
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.17 E-value=8.9e-05 Score=72.13 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCC---------CCchhhhhhhh---hhhhhH
Q psy6333 76 AVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNS---------TSNEQEVQTRT---DQFQDV 143 (371)
Q Consensus 76 ~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~---------~~~~~~~~~~~---~~~~~~ 143 (371)
.++.++|+..-+.++...+ +.|+++.||++|++.++-.+..+....... ...++...... ......
T Consensus 218 ~~~~l~~~~~ei~~i~~~g--~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~ 295 (425)
T PF08016_consen 218 VLFVLYFLYREIKKIRREG--RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQL 295 (425)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHH
Confidence 3444455555555655443 689999999999998876554433321000 00000000000 001111
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHh
Q psy6333 144 R-RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWA 222 (371)
Q Consensus 144 ~-~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~ 222 (371)
. .+.-++-++-.+|++++++..+.+..+..++..+...+...+++++++++.||.+++.+.+... ..|.++..|+.-.
T Consensus 296 ~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~-~~f~s~~~s~~tl 374 (425)
T PF08016_consen 296 YRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS-EDFSSFSSSLVTL 374 (425)
T ss_pred HHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cccCCHHHHHHHH
Confidence 1 1122233334567777777788888999999999999999999999999999999998876533 3578888877766
Q ss_pred hhhhcc-cccCCcc-cCCcchhhHHhHHH
Q psy6333 223 GITMTT-VGYGDIC-PTTPLGKMIGSNQM 249 (371)
Q Consensus 223 ~~t~tT-vGyGdi~-p~t~~~~~~~~~~~ 249 (371)
+.++.+ .+|+|+. +....|.++-...+
T Consensus 375 ~~~l~g~~~~~~~~~~~~~lg~l~~~~~~ 403 (425)
T PF08016_consen 375 FRMLLGDFDYDELYQANPVLGPLFFFSFM 403 (425)
T ss_pred HHHhcCCCchhhhhcccccHHHHHHHHHH
Confidence 555533 4555552 33344555544333
No 22
>KOG4404|consensus
Probab=98.12 E-value=1.8e-06 Score=77.14 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=25.2
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCc
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTP 239 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~ 239 (371)
++|+||+|++++|+||+|+||.++...
T Consensus 185 Wsyfds~YyCFITltTIGFGDyValQ~ 211 (350)
T KOG4404|consen 185 WSYFDSYYYCFITLTTIGFGDYVALQQ 211 (350)
T ss_pred cchhhhhheeeeeeeeccccchhhhcc
Confidence 899999999999999999999988755
No 23
>KOG1418|consensus
Probab=97.96 E-value=2.8e-05 Score=75.36 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=35.6
Q ss_pred CCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 208 HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 208 ~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
.....+++..|+||+++++||+|||+++|.|..||++++
T Consensus 109 ~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i 147 (433)
T KOG1418|consen 109 PDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTI 147 (433)
T ss_pred CCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHH
Confidence 344457999999999999999999999999999999999
No 24
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.88 E-value=2.5e-05 Score=72.68 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=28.2
Q ss_pred CcCChhhHHHHhhhhhcccccCC--cccCCcchhhHHhHHHH
Q psy6333 211 KFVSIPETFWWAGITMTTVGYGD--ICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 211 ~~~~~~~s~y~~~~t~tTvGyGd--i~p~t~~~~~~~~~~~~ 250 (371)
+..+|.+||+|++.|+||||||. ++|..+.+-++.+.++.
T Consensus 81 ~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~ 122 (336)
T PF01007_consen 81 NVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSL 122 (336)
T ss_dssp T-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHH
T ss_pred cccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHH
Confidence 34689999999999999999998 67888877776664433
No 25
>KOG3599|consensus
Probab=97.87 E-value=0.00054 Score=70.59 Aligned_cols=168 Identities=17% Similarity=0.293 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCch-------------hhhhhhhhh
Q psy6333 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNE-------------QEVQTRTDQ 139 (371)
Q Consensus 73 ~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~-------------~~~~~~~~~ 139 (371)
++-+++.++|+++-+.++.- ...++|+++.||++|+..+.-.++.+.+......... -.+.....+
T Consensus 470 vvf~l~~~yf~~~e~~~i~~-~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~ 548 (798)
T KOG3599|consen 470 VVFLLFVLYFAVAEGLKIWI-HRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQ 548 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 33344455566666666553 2234899999999999998777665554322210000 000011111
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhH
Q psy6333 140 FQDVRRVVQ-VFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 218 (371)
Q Consensus 140 ~~~~~~~~~-~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (371)
+..+.+.+. ++-++-.+++++.+++...++.+..++..+.+.++...+.++++.+.+|.+++++.+..-. +|.++.+
T Consensus 549 ~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~-~f~~f~~- 626 (798)
T KOG3599|consen 549 WNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVS-DFRTFVA- 626 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-ChHHHHH-
Confidence 111112111 2233345677778888888999999999999999999888888899999999988775322 2445544
Q ss_pred HHHhhhhhcccccCCcccCCc--chhhHHh
Q psy6333 219 FWWAGITMTTVGYGDICPTTP--LGKMIGS 246 (371)
Q Consensus 219 ~y~~~~t~tTvGyGdi~p~t~--~~~~~~~ 246 (371)
+++|+...-.||..|.+. .+++++.
T Consensus 627 ---s~~t~~~~~~G~~~~~~i~~~~r~LG~ 653 (798)
T KOG3599|consen 627 ---SIVTLLRYILGDFCPAEIFHANRILGP 653 (798)
T ss_pred ---HHHHHHHHHhccCCccccccCCchHHH
Confidence 455554433456666543 3666666
No 26
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.49 E-value=0.0052 Score=64.29 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHH
Q psy6333 70 KLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPY 115 (371)
Q Consensus 70 ~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~ 115 (371)
+..++.......|.++-...++..+ ...|+++.||++|++....+
T Consensus 390 ~~e~~~~~~~~~~~~~e~~~~~~~g-~~~y~~~~wn~~d~~~~~~~ 434 (743)
T TIGR00870 390 PLEMLIVTWVDGLRLGEEKLIWLGG-IFEYIHQLWNILDFGMNSFY 434 (743)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555443 34799999999999655433
No 27
>KOG4404|consensus
Probab=97.47 E-value=8.2e-05 Score=66.79 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=33.1
Q ss_pred cCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 212 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
.+.+.-||||+.+.+||||||--+|.|..|++|++
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm 112 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCM 112 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhh
Confidence 46788999999999999999999999999999999
No 28
>KOG1418|consensus
Probab=96.70 E-value=5.8e-05 Score=73.17 Aligned_cols=31 Identities=45% Similarity=0.846 Sum_probs=29.0
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhh
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKM 243 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~ 243 (371)
.+|++|+||+++++|||||||++|.+..++.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~ 271 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRF 271 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCccee
Confidence 7899999999999999999999999998774
No 29
>KOG3609|consensus
Probab=96.46 E-value=0.18 Score=51.53 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHH
Q psy6333 80 TWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 119 (371)
Q Consensus 80 ~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~ 119 (371)
+-++.+=+-.++..+ ...|++..||++|++.+.-+...+
T Consensus 395 ~G~iw~E~k~lw~~G-~~~y~~~~Wn~lDf~m~siyl~s~ 433 (822)
T KOG3609|consen 395 MGLIWEEIKELWRVG-RDGYLAFWWNWLDFAMISIYLASF 433 (822)
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555566666554 458999999999998876654443
No 30
>KOG3614|consensus
Probab=96.22 E-value=0.031 Score=59.43 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc------hhhhhcccchhhHHHHHHHHHHHHHH
Q psy6333 72 AIVEAVCITWFSVEYLLRLGASPE------KWKFFKGGLNVIDLLAIMPYYISLFL 121 (371)
Q Consensus 72 ~~i~~i~~~iF~~d~~lr~~~~~~------~~~y~~~~~~~iDli~vip~~i~~~~ 121 (371)
.++-++..+-+.+|-+=..+.... -.-|+..+||++|+++++-+++.++.
T Consensus 825 Ew~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~ 880 (1381)
T KOG3614|consen 825 EWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVL 880 (1381)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 333344444455676666655432 12489999999999999999887765
No 31
>KOG2572|consensus
Probab=95.68 E-value=0.05 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=17.7
Q ss_pred hhHHHHhhhhh-cccccCCcccCCcchh
Q psy6333 216 PETFWWAGITM-TTVGYGDICPTTPLGK 242 (371)
Q Consensus 216 ~~s~y~~~~t~-tTvGyGdi~p~t~~~~ 242 (371)
--|+|-+.-|= .|=+||=|+-.+.+|+
T Consensus 320 EKALFrALKtk~~TPKYGLIyhasLVgQ 347 (498)
T KOG2572|consen 320 EKALFRALKTKHDTPKYGLIYHASLVGQ 347 (498)
T ss_pred HHHHHHHHhcccCCCCCcceeccchhcc
Confidence 35777777776 4678887765555444
No 32
>KOG0510|consensus
Probab=95.66 E-value=0.47 Score=48.45 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=64.1
Q ss_pred chhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy6333 95 EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFT 174 (371)
Q Consensus 95 ~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~ 174 (371)
.+.+|+.+.-|++|.+.....++........ .+..+..... .+.-++--++++-+++.++........
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~~----------~~~~~Q~~la--a~aV~l~W~nllLmi~~~p~~gIfvvM 654 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFFE----------ITAHLQWVLA--AFAVLLGWMNLLLMIGRFPVFGIFVVM 654 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhhh----------hHHHHHHHHH--HHHHHHHHHHHHHHHccCCccceehHH
Confidence 3579999999999998877665544332110 0111111111 111222233444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhh
Q psy6333 175 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITM 226 (371)
Q Consensus 175 l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~ 226 (371)
+......++....+..++++.|+..+|.+.+..++ |.+.+-|+--+++.|
T Consensus 655 ~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~e--Fs~p~ms~l~t~~MM 704 (929)
T KOG0510|consen 655 LEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSSE--FSNPFMSKLETFVMM 704 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCC--cCCCcchhhhhHHHh
Confidence 55566666777777777788888888877654433 455555554444443
No 33
>KOG3533|consensus
Probab=95.44 E-value=0.83 Score=49.06 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy6333 159 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAE 204 (371)
Q Consensus 159 ~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 204 (371)
+.++-.-..+.++..+...--+.+.+..++.++++++|+.++|++.
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflff 2444 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFF 2444 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334334444555444444455667777788888899999998764
No 34
>KOG3827|consensus
Probab=95.04 E-value=0.051 Score=50.45 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhccc-------CCC-------CCcCChhhHHHHhhhhhcccccCCcccCC
Q psy6333 188 FLAMGVLIFSSLAYFAEKD-------EHD-------TKFVSIPETFWWAGITMTTVGYGDICPTT 238 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~s~y~~~~t~tTvGyGdi~p~t 238 (371)
-.++.+++||.++|.+... .++ .+..++..||-|++-|=||+|||--.+..
T Consensus 72 sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTe 136 (400)
T KOG3827|consen 72 SFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTE 136 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCc
Confidence 3445577788888865311 111 24568899999999999999999755443
No 35
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=94.40 E-value=4.2 Score=39.27 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=9.3
Q ss_pred hHHHHhhhhhcccc
Q psy6333 217 ETFWWAGITMTTVG 230 (371)
Q Consensus 217 ~s~y~~~~t~tTvG 230 (371)
-.+||++.++.|+|
T Consensus 251 llLYWv~snlwtl~ 264 (429)
T PRK00247 251 IALYWVANNLWTLI 264 (429)
T ss_pred HHHHHHHhhHHHHH
Confidence 45677777776655
No 36
>KOG2573|consensus
Probab=94.02 E-value=0.15 Score=47.49 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=20.2
Q ss_pred hHHHHhhhhh-cccccCCcccCCcchhhH
Q psy6333 217 ETFWWAGITM-TTVGYGDICPTTPLGKMI 244 (371)
Q Consensus 217 ~s~y~~~~t~-tTvGyGdi~p~t~~~~~~ 244 (371)
-|++-++-|= -|=-||=|.-.+..||.-
T Consensus 335 KALFRALKtrgnTPKYGLIyhSsfigrA~ 363 (498)
T KOG2573|consen 335 KALFRALKTRGNTPKYGLIYHSSFIGRAG 363 (498)
T ss_pred HHHHHHHHhcCCCCCceeEeecchhhhhh
Confidence 5777777666 356688888888887753
No 37
>KOG3676|consensus
Probab=93.88 E-value=8.9 Score=39.51 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC-----------CcCChhhHHHHhhhhh--cccccCCcccCCc
Q psy6333 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDT-----------KFVSIPETFWWAGITM--TTVGYGDICPTTP 239 (371)
Q Consensus 179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~y~~~~t~--tTvGyGdi~p~t~ 239 (371)
...+...+++-+++++.||..+|.+....+++ .-.+..+++..++.|+ .|+||||......
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~ 613 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACEN 613 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhccc
Confidence 34455666666677777887777654433222 2234556677667666 6999999665544
No 38
>PLN03223 Polycystin cation channel protein; Provisional
Probab=91.20 E-value=10 Score=41.61 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----cchhhhhcccchhhHHHHHHHHHHHH
Q psy6333 71 LAIVEAVCITWFSVEYLLRLGAS----PEKWKFFKGGLNVIDLLAIMPYYISL 119 (371)
Q Consensus 71 ~~~i~~i~~~iF~~d~~lr~~~~----~~~~~y~~~~~~~iDli~vip~~i~~ 119 (371)
+.++-.++.++|++.=+.+++.. +.++.||+++||++|++.++-.+..+
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAI 1230 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATI 1230 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHH
Confidence 33444444555566666665532 35688999999999998876654443
No 39
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.95 E-value=5.7 Score=33.32 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhc
Q psy6333 68 NPKLAIVEAVCITWFSVEYLLRLGA 92 (371)
Q Consensus 68 ~~~~~~i~~i~~~iF~~d~~lr~~~ 92 (371)
...+.++|.+..+...+++++....
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~~~ 54 (200)
T PF00520_consen 30 RSWWNWFDFISVIPSIVSVILRSYG 54 (200)
T ss_dssp CSHHHHHHHHHHHHHCCHHCCHCSS
T ss_pred cChhhcccccccccccccccccccc
Confidence 4677889988888877777777554
No 40
>KOG2573|consensus
Probab=89.59 E-value=0.089 Score=48.99 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q psy6333 75 EAVCITWFSVEYLL 88 (371)
Q Consensus 75 ~~i~~~iF~~d~~l 88 (371)
++++..++++|-+=
T Consensus 167 nmvIqaI~lLDqlD 180 (498)
T KOG2573|consen 167 NMVIQAIALLDQLD 180 (498)
T ss_pred hHHHHHHHHHHHHh
Confidence 44555666666543
No 41
>COG4499 Predicted membrane protein [Function unknown]
Probab=88.58 E-value=0.68 Score=43.20 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.3
Q ss_pred CCcccCCc
Q psy6333 232 GDICPTTP 239 (371)
Q Consensus 232 Gdi~p~t~ 239 (371)
.+..|...
T Consensus 272 e~ydp~kl 279 (434)
T COG4499 272 ENYDPEKL 279 (434)
T ss_pred ccCChhhC
Confidence 34444433
No 42
>KOG3713|consensus
Probab=87.91 E-value=15 Score=35.86 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcc
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGAS 93 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~ 93 (371)
...+.++-.++|+..++=+.+-......... .....+.++|++..+-|-+|+++.....
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~P~k~~-----F~k~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVAPNKLE-----FFKSPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcCchHHH-----HHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666666555544333322211100 0035678999998888999998886654
No 43
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=87.73 E-value=17 Score=35.28 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHH
Q psy6333 106 VIDLLAIMPYYISLFL 121 (371)
Q Consensus 106 ~iDli~vip~~i~~~~ 121 (371)
.+-+++-+|+++.++.
T Consensus 106 cLP~LIQiPIfigLy~ 121 (429)
T PRK00247 106 CVPALIQIPVFLGLYQ 121 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455666555544
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=87.23 E-value=11 Score=40.11 Aligned_cols=20 Identities=10% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy6333 145 RVVQVFRIMRILRILKLARH 164 (371)
Q Consensus 145 ~~~~~lrllRllri~~l~~~ 164 (371)
+++|++|+.|+.+++.....
T Consensus 172 ~llrl~Rl~ri~~~~~~le~ 191 (823)
T PLN03192 172 GLLRFWRLRRVKQLFTRLEK 191 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667777777666665543
No 45
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=86.74 E-value=2.4 Score=39.60 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy6333 108 DLLAIM 113 (371)
Q Consensus 108 Dli~vi 113 (371)
|+++.+
T Consensus 93 dl~~~l 98 (321)
T PF07946_consen 93 DLFSWL 98 (321)
T ss_pred CHHHHH
Confidence 443333
No 46
>KOG1545|consensus
Probab=86.25 E-value=4.1 Score=37.94 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy6333 143 VRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE 181 (371)
Q Consensus 143 ~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~ 181 (371)
...-+-++|++|+.|++|+.+.+..-..+ +.+-+.++.
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGL-QILGqTl~a 356 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGL-QILGQTLRA 356 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchH-HHHHHHHHH
Confidence 33446677777777777777665554433 344444433
No 47
>KOG3599|consensus
Probab=85.85 E-value=25 Score=37.06 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcc
Q psy6333 68 NPKLAIVEAVCITWFSVEYLLRLGAS 93 (371)
Q Consensus 68 ~~~~~~i~~i~~~iF~~d~~lr~~~~ 93 (371)
...+.++|.++.++.++-+++..+..
T Consensus 497 ~s~wN~ld~~i~~ls~~~~~~~~~r~ 522 (798)
T KOG3599|consen 497 RSKWNWLDLAIVLLSVVLLVLMITRT 522 (798)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888777777776544
No 48
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=85.25 E-value=20 Score=30.43 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy6333 182 LGLLMLFLAMGVLIFSSLAYF 202 (371)
Q Consensus 182 l~~l~~~~~~~~~~~~~~~~~ 202 (371)
+..+++++..++++.|.++.+
T Consensus 8 I~~vLLliG~~f~ligaIGLl 28 (197)
T PRK12585 8 IISIMILIGGLLSILAAIGVI 28 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666654
No 49
>KOG2412|consensus
Probab=80.89 E-value=17 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHH
Q psy6333 104 LNVIDLLAIMPYYISL 119 (371)
Q Consensus 104 ~~~iDli~vip~~i~~ 119 (371)
|++-|+.+.+....--
T Consensus 24 ~~fpdl~a~~as~~~~ 39 (591)
T KOG2412|consen 24 WNFPDLVAEIASVEKK 39 (591)
T ss_pred CCchhHHHHhhhhhhh
Confidence 4555666665554433
No 50
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=72.98 E-value=34 Score=33.23 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy6333 69 PKLAIVEAVCITWFSVEYLLRL 90 (371)
Q Consensus 69 ~~~~~i~~i~~~iF~~d~~lr~ 90 (371)
..+.++|.++.++.++=+++.+
T Consensus 242 ~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 242 SFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 3445556555554444444443
No 51
>KOG2062|consensus
Probab=71.95 E-value=4.9 Score=41.01 Aligned_cols=10 Identities=20% Similarity=0.032 Sum_probs=5.2
Q ss_pred CeEEecccch
Q psy6333 269 SIVSFHHVNL 278 (371)
Q Consensus 269 ~~~~~~~~~l 278 (371)
..++|.+.++
T Consensus 743 T~vigln~dL 752 (929)
T KOG2062|consen 743 TTVIGLNEDL 752 (929)
T ss_pred ceEEEecccc
Confidence 4555555444
No 52
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=68.70 E-value=5 Score=28.76 Aligned_cols=33 Identities=3% Similarity=0.082 Sum_probs=26.1
Q ss_pred hhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcc
Q psy6333 15 TLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNT 52 (371)
Q Consensus 15 ~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~ 52 (371)
..+-||+|.+ ..+|+++++++++++++.+.+..
T Consensus 36 ~~IIHP~S~f-----R~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 36 PWIIHPFSKF-----RFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred CeEEcCCccH-----HHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467999998 78888888888888888776543
No 53
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=68.63 E-value=1.2e+02 Score=29.87 Aligned_cols=25 Identities=4% Similarity=-0.068 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc
Q psy6333 70 KLAIVEAVCITWFSVEYLLRLGASP 94 (371)
Q Consensus 70 ~~~~i~~i~~~iF~~d~~lr~~~~~ 94 (371)
++..+-.++.+.|++.++-+++..+
T Consensus 207 W~~Ql~R~fvisFLiS~~WNWiyLY 231 (549)
T PF05934_consen 207 WFTQLRRMFVISFLISFGWNWIYLY 231 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677788888888875543
No 54
>COG4499 Predicted membrane protein [Function unknown]
Probab=68.28 E-value=12 Score=35.26 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.9
Q ss_pred CcccCCc
Q psy6333 233 DICPTTP 239 (371)
Q Consensus 233 di~p~t~ 239 (371)
.-.|.+.
T Consensus 277 ~klPksv 283 (434)
T COG4499 277 EKLPKSV 283 (434)
T ss_pred hhCcHHH
Confidence 3344443
No 55
>KOG0163|consensus
Probab=65.36 E-value=54 Score=33.97 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.2
Q ss_pred HHHHHHHHHh
Q psy6333 113 MPYYISLFLL 122 (371)
Q Consensus 113 ip~~i~~~~~ 122 (371)
.|+++.++..
T Consensus 615 ~~ll~sLF~S 624 (1259)
T KOG0163|consen 615 NPLLVSLFPS 624 (1259)
T ss_pred chHHHHHccC
Confidence 4555555543
No 56
>KOG4440|consensus
Probab=64.52 E-value=28 Score=35.08 Aligned_cols=34 Identities=15% Similarity=0.449 Sum_probs=28.4
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
.++..|+||+--.+..-|-|+-+|.+...|++++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGm 645 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGM 645 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHH
Confidence 4678899988888877788888899998888777
No 57
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=64.42 E-value=1.4e+02 Score=29.74 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=28.3
Q ss_pred ChhhHHHHhhhhhcccccC--CcccCCcch------hhHHhHHHHHH
Q psy6333 214 SIPETFWWAGITMTTVGYG--DICPTTPLG------KMIGSNQMRRE 252 (371)
Q Consensus 214 ~~~~s~y~~~~t~tTvGyG--di~p~t~~~------~~~~~~~~~~~ 252 (371)
++.++++=++.++.|||-| -..+.++.+ +++-+..|..+
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 6889999999999999875 333234444 88877777733
No 58
>KOG1029|consensus
Probab=63.30 E-value=72 Score=33.16 Aligned_cols=16 Identities=0% Similarity=-0.145 Sum_probs=11.2
Q ss_pred cCChhhHHHHhhhhhc
Q psy6333 212 FVSIPETFWWAGITMT 227 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~t 227 (371)
.+-|+-|+|.+=+.|+
T Consensus 248 ~dEfilam~liema~s 263 (1118)
T KOG1029|consen 248 ADEFILAMHLIEMAKS 263 (1118)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4567788887777775
No 59
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=56.02 E-value=1 Score=37.57 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.7
Q ss_pred CCcccCCc
Q psy6333 232 GDICPTTP 239 (371)
Q Consensus 232 Gdi~p~t~ 239 (371)
-.+.|.|.
T Consensus 77 kei~pL~~ 84 (178)
T PF10278_consen 77 KEITPLSS 84 (178)
T ss_pred ccCCcCCH
Confidence 34555443
No 60
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=53.34 E-value=1.3e+02 Score=32.93 Aligned_cols=10 Identities=20% Similarity=0.075 Sum_probs=4.5
Q ss_pred hHHHHHHHHH
Q psy6333 107 IDLLAIMPYY 116 (371)
Q Consensus 107 iDli~vip~~ 116 (371)
.|+.++-.++
T Consensus 224 SDVWSLG~IL 233 (1021)
T PTZ00266 224 SDMWALGCII 233 (1021)
T ss_pred hHHHHHHHHH
Confidence 3555543333
No 61
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=52.83 E-value=2.2e+02 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=30.9
Q ss_pred CChhhHHHHhhhhhcccccC-Cc--ccCCcchhhHHhHHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGYG-DI--CPTTPLGKMIGSNQMRR 251 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyG-di--~p~t~~~~~~~~~~~~~ 251 (371)
.++.++++=++..++|||.+ ++ ...++.++++.+..|..
T Consensus 347 ~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~ 388 (390)
T TIGR00933 347 YDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFI 388 (390)
T ss_pred CCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHc
Confidence 57889999999999999866 33 44677799988888863
No 62
>KOG4043|consensus
Probab=51.89 E-value=9.6 Score=31.08 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=8.0
Q ss_pred hhhhhcccccCCcccCCc
Q psy6333 222 AGITMTTVGYGDICPTTP 239 (371)
Q Consensus 222 ~~~t~tTvGyGdi~p~t~ 239 (371)
+++----+|=-...|.|+
T Consensus 96 alIEKPPIggeellpLTp 113 (214)
T KOG4043|consen 96 ALIEKPPIGGEELLPLTP 113 (214)
T ss_pred HHHhcCCCCccccccCCh
Confidence 344444455334445554
No 63
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=49.64 E-value=14 Score=31.47 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=6.1
Q ss_pred cCChhhHHHHhhhhh
Q psy6333 212 FVSIPETFWWAGITM 226 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~ 226 (371)
|+.-.-.+|.+.+++
T Consensus 90 Fdg~SL~Ly~~~i~v 104 (196)
T smart00786 90 FDYGSLVLYVLGVCV 104 (196)
T ss_pred ecccchHHHHHhhee
Confidence 333333445444333
No 64
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=49.59 E-value=6.5 Score=31.58 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=23.2
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
.+..+++|+++.+++. +-++..|.+..+|++.+.+..
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l 79 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWL 79 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHH
Confidence 3567888888888776 446899999999999985544
No 65
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=48.38 E-value=1.3e+02 Score=29.91 Aligned_cols=8 Identities=25% Similarity=-0.147 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy6333 82 FSVEYLLR 89 (371)
Q Consensus 82 F~~d~~lr 89 (371)
++.+-+..
T Consensus 35 ~la~~~~~ 42 (489)
T PF05262_consen 35 GLAEALKN 42 (489)
T ss_pred HHHHHHhc
Confidence 44444433
No 66
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.90 E-value=6.1 Score=35.54 Aligned_cols=20 Identities=5% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy6333 33 IAIISIMFIVLSTVALTLNT 52 (371)
Q Consensus 33 ~~~~~~~liil~~i~~~~~~ 52 (371)
|..+.+++.++..+++++..
T Consensus 27 ~~~llll~ail~w~~iimsd 46 (381)
T PF05297_consen 27 FGLLLLLVAILVWFFIIMSD 46 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444443
No 67
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=47.11 E-value=1.4e+02 Score=32.57 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy6333 77 VCITWFSVEYL 87 (371)
Q Consensus 77 i~~~iF~~d~~ 87 (371)
+..++-.++++
T Consensus 124 a~QIL~ALaYL 134 (1021)
T PTZ00266 124 TRQLLHALAYC 134 (1021)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 68
>PRK10750 potassium transporter; Provisional
Probab=46.01 E-value=91 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=29.8
Q ss_pred ChhhHHHHhhhhhcccccC--Cc----ccCCcchhhHHhHHHHHH
Q psy6333 214 SIPETFWWAGITMTTVGYG--DI----CPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 214 ~~~~s~y~~~~t~tTvGyG--di----~p~t~~~~~~~~~~~~~~ 252 (371)
+..+|+--+..++++||.| .. ...++.++++.+..|...
T Consensus 421 ~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 421 DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred cHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 4778888888888888765 23 356778999999888865
No 69
>KOG2002|consensus
Probab=42.33 E-value=33 Score=36.41 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=3.5
Q ss_pred CcccCCcc
Q psy6333 233 DICPTTPL 240 (371)
Q Consensus 233 di~p~t~~ 240 (371)
+..|.++.
T Consensus 744 ~~~p~~~~ 751 (1018)
T KOG2002|consen 744 HLAPSNTS 751 (1018)
T ss_pred HhCCccch
Confidence 34444443
No 70
>KOG2357|consensus
Probab=42.06 E-value=1.9e+02 Score=27.73 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q psy6333 72 AIVEAVCITWFSVEYLLRLGASP 94 (371)
Q Consensus 72 ~~i~~i~~~iF~~d~~lr~~~~~ 94 (371)
+.+|+++.+++++ ++.++++..
T Consensus 107 y~~E~~~v~~Ll~-y~~nY~~GK 128 (440)
T KOG2357|consen 107 YTVEIVMVAILLL-YAANYFTGK 128 (440)
T ss_pred hHhHHHHHHHHHH-HHHHHHhcc
Confidence 4455555444333 344444443
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=2.2e+02 Score=25.73 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcccchhhhhcccchhhHHHHHHHH
Q psy6333 81 WFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPY 115 (371)
Q Consensus 81 iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~ 115 (371)
+|--+.+++.++... ++. |.-.|+.+++.+
T Consensus 22 ~f~~~~~~~~~~~~d----~k~-Wk~~DlYa~lgL 51 (379)
T COG5269 22 YFKGRNVLNLYTRED----FKN-WKKVDLYALLGL 51 (379)
T ss_pred HhcchhHHHHHHhhh----hhh-hhhhhHHHHhch
Confidence 344455555554332 233 445677666554
No 72
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=37.39 E-value=14 Score=31.09 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=28.1
Q ss_pred cCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 212 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
......+.||...+++++|||++.|.+..+.....
T Consensus 115 i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~ 149 (212)
T COG1226 115 ILARARDLDEAVETLTTVGADEVVPPTFESALLLA 149 (212)
T ss_pred EEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHH
Confidence 45667788899999999999999988877665444
No 73
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=37.08 E-value=3e+02 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy6333 75 EAVCITWFSVEYLL 88 (371)
Q Consensus 75 ~~i~~~iF~~d~~l 88 (371)
+++..++.++|+++
T Consensus 105 ~~vl~~Lllvdlil 118 (232)
T PF10329_consen 105 NIVLAGLLLVDLIL 118 (232)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 74
>KOG0498|consensus
Probab=36.35 E-value=5.4e+02 Score=27.12 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhH
Q psy6333 144 RRVVQVFRIMRILRILKLARHSTGL 168 (371)
Q Consensus 144 ~~~~~~lrllRllri~~l~~~~~~l 168 (371)
+...+++|+.|+++.++-.....+.
T Consensus 201 l~~~rL~Rl~Rv~~l~~r~~k~~~~ 225 (727)
T KOG0498|consen 201 LLLQRLPRLRRVIPLFARLEKDTGF 225 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3557778888888777665544443
No 75
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=36.07 E-value=5.4e+02 Score=27.04 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=18.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q psy6333 174 TLRNSYK-ELGLLMLFLAMGVLIFSSLAYFA 203 (371)
Q Consensus 174 ~l~~~~~-~l~~l~~~~~~~~~~~~~~~~~~ 203 (371)
.+...+. .+...+++++++++.||+..+.+
T Consensus 499 ~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l 529 (743)
T TIGR00870 499 MIGRMILGDILRFLFIYAVVLFGFACGLNQL 529 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 56666666777777777766654
No 76
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=35.82 E-value=3.5e+02 Score=24.85 Aligned_cols=10 Identities=0% Similarity=0.228 Sum_probs=5.4
Q ss_pred CChhhHHHHh
Q psy6333 213 VSIPETFWWA 222 (371)
Q Consensus 213 ~~~~~s~y~~ 222 (371)
+.|.|..+++
T Consensus 250 ~~yiDGlFF~ 259 (293)
T PF12271_consen 250 SHYIDGLFFG 259 (293)
T ss_pred cCeechHHHH
Confidence 5566655543
No 77
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=34.03 E-value=4.2e+02 Score=26.86 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=33.6
Q ss_pred CChhhHHHHhhhhhccccc--CCcccCCcchhhHHhHHHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGY--GDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGy--Gdi~p~t~~~~~~~~~~~~~~ 252 (371)
..+.+-+|=.+....|+|. |+++|.|+.+++..+..|...
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 5788899988888888884 468999999999999888755
No 78
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=33.48 E-value=2.7e+02 Score=27.64 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=3.0
Q ss_pred ChhhHHH
Q psy6333 214 SIPETFW 220 (371)
Q Consensus 214 ~~~~s~y 220 (371)
.|+.+-|
T Consensus 122 ~~~~~~Y 128 (489)
T PF05262_consen 122 DYFKKKY 128 (489)
T ss_pred HHHHHHh
Confidence 3444444
No 79
>PF09591 DUF2463: Protein of unknown function (DUF2463); InterPro: IPR019081 This protein is found in eukaryotic, parasitic microsporidia. Its function is unknown.
Probab=32.39 E-value=3e+02 Score=23.89 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=13.8
Q ss_pred hhhhhcccch-hhHHHHHHHHHHHHHH
Q psy6333 96 KWKFFKGGLN-VIDLLAIMPYYISLFL 121 (371)
Q Consensus 96 ~~~y~~~~~~-~iDli~vip~~i~~~~ 121 (371)
...+--+..| .+|++..+...+....
T Consensus 119 ~i~FtDtgi~ilIdlliLl~~i~~~~~ 145 (210)
T PF09591_consen 119 QIGFTDTGINILIDLLILLCSIVNLVL 145 (210)
T ss_pred cceecCcchhHHHHHHHHHHHHHHHHh
Confidence 3345444444 5677766665554444
No 80
>KOG2927|consensus
Probab=32.20 E-value=1.6e+02 Score=27.69 Aligned_cols=34 Identities=9% Similarity=0.275 Sum_probs=17.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccccccccc
Q psy6333 26 LLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHK 59 (371)
Q Consensus 26 ~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~ 59 (371)
|-|......++.++++++.+.++.+.-+|.....
T Consensus 183 yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~ 216 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQ 216 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhc
Confidence 3444555555555555555555555555554443
No 81
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=31.09 E-value=1.1e+02 Score=29.29 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.3
Q ss_pred CChhhHHHHhhhhhcccccC--CcccCCcchhhHHhHHH
Q psy6333 213 VSIPETFWWAGITMTTVGYG--DICPTTPLGKMIGSNQM 249 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyG--di~p~t~~~~~~~~~~~ 249 (371)
....++.++++++++|.||. |+.-.++..+++.+..|
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lM 268 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLM 268 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHH
Confidence 45788899999999999987 44444555666665333
No 82
>KOG3598|consensus
Probab=30.14 E-value=3.3 Score=45.20 Aligned_cols=6 Identities=0% Similarity=0.434 Sum_probs=3.0
Q ss_pred CeEEec
Q psy6333 269 SIVSFH 274 (371)
Q Consensus 269 ~~~~~~ 274 (371)
.+|.|.
T Consensus 1683 dvItce 1688 (2220)
T KOG3598|consen 1683 DVITCE 1688 (2220)
T ss_pred ceeeec
Confidence 355563
No 83
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=29.36 E-value=3.9e+02 Score=23.39 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.5
Q ss_pred cCCcccCCc
Q psy6333 231 YGDICPTTP 239 (371)
Q Consensus 231 yGdi~p~t~ 239 (371)
||..+-+++
T Consensus 69 YG~aSgV~P 77 (217)
T PF10147_consen 69 YGLASGVDP 77 (217)
T ss_pred hhhhcCCCh
Confidence 444333333
No 84
>KOG2062|consensus
Probab=28.84 E-value=18 Score=37.13 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=4.1
Q ss_pred cccccCCcc
Q psy6333 227 TTVGYGDIC 235 (371)
Q Consensus 227 tTvGyGdi~ 235 (371)
.+-|-|+..
T Consensus 616 aCAGtG~~e 624 (929)
T KOG2062|consen 616 ACAGTGLKE 624 (929)
T ss_pred hhcCCCcHH
Confidence 344555533
No 85
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.75 E-value=78 Score=20.54 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccCCcccCCcchhhHHhHHHHHHHHHHHHHH
Q psy6333 230 GYGDICPTTPLGKMIGSNQMRREKALKRREA 260 (371)
Q Consensus 230 GyGdi~p~t~~~~~~~~~~~~~~~~~~~~~~ 260 (371)
||.+|.|... ++|+.+....+.++......
T Consensus 8 ~Ye~i~Pg~a-erI~~mae~eq~hR~~~e~~ 37 (50)
T PF10097_consen 8 GYEQILPGAA-ERIFAMAEKEQEHRHELEKK 37 (50)
T ss_pred HHHhHCcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 7899999876 79999988777766554443
No 86
>KOG1277|consensus
Probab=27.67 E-value=6.1e+02 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=23.7
Q ss_pred CcccchhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcc
Q psy6333 2 SMYSHIDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNT 52 (371)
Q Consensus 2 ~~~~~~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~ 52 (371)
|+|.++--|+++++.+-.- +.+-..+.....++|.+......
T Consensus 349 s~Y~r~gG~~Wik~m~lta---------~Lfp~~~~~t~~~~N~vai~y~a 390 (593)
T KOG1277|consen 349 SFYARLGGRRWIKNMLLTA---------SLFPVPVFGTAFLLNTVAIAYGA 390 (593)
T ss_pred eeeehhccHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHHHHhcc
Confidence 6788888889988873211 22222333345556666655443
No 87
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=27.63 E-value=1.8e+02 Score=22.40 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccc
Q psy6333 9 IRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIP 54 (371)
Q Consensus 9 ~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~ 54 (371)
+|.+...++++|...-++--...+|+..+.+.+.+.+++...++.+
T Consensus 5 rr~rr~rfl~~~e~ddPmtGvANLfDaamVfsva~LI~lv~Sy~lp 50 (121)
T COG4744 5 RRRRRMRFLEDPEDDDPMTGVANLFDAAMVFSVALLIALVMSYHLP 50 (121)
T ss_pred HHHHhhhcccCccccCcchhhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4455567778887555444446777777666665555555444433
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=27.34 E-value=22 Score=35.30 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=3.9
Q ss_pred cCCcccCCcc
Q psy6333 231 YGDICPTTPL 240 (371)
Q Consensus 231 yGdi~p~t~~ 240 (371)
++...+.+..
T Consensus 323 ~~~~~~~~~p 332 (482)
T PRK04195 323 KRGFTRYQPP 332 (482)
T ss_pred CCCCCCcCCc
Confidence 3344433333
No 89
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=26.73 E-value=2.2e+02 Score=20.88 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=7.5
Q ss_pred ccCCcccCCcchhh
Q psy6333 230 GYGDICPTTPLGKM 243 (371)
Q Consensus 230 GyGdi~p~t~~~~~ 243 (371)
|||-=.|..+.||+
T Consensus 68 ~y~~C~~~~~~~r~ 81 (91)
T PHA02680 68 MYRKCSGSMPYERL 81 (91)
T ss_pred HhcccCCCceeecc
Confidence 45544455555554
No 90
>KOG1608|consensus
Probab=26.38 E-value=4.8e+02 Score=24.00 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=7.6
Q ss_pred hhhcccccCCcc
Q psy6333 224 ITMTTVGYGDIC 235 (371)
Q Consensus 224 ~t~tTvGyGdi~ 235 (371)
+...|+|||---
T Consensus 267 iaVlt~gfgla~ 278 (374)
T KOG1608|consen 267 IAVLTVGFGLAG 278 (374)
T ss_pred HHHHHHHhhhcc
Confidence 445688888533
No 91
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=25.99 E-value=4.6e+02 Score=31.69 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccC
Q psy6333 182 LGLLMLFLAMGVLIFSSLAYFAEKDE 207 (371)
Q Consensus 182 l~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
++..+..+++-.++|..+.++++.-.
T Consensus 836 ~~~~~~ml~~d~~lY~lL~~Yld~V~ 861 (2272)
T TIGR01257 836 FLLSMKMMLLDAALYGLLAWYLDQVF 861 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444555555667777777776543
No 92
>KOG3598|consensus
Probab=25.88 E-value=6.2 Score=43.23 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=3.9
Q ss_pred HHHhhhcCCC
Q psy6333 12 FAATLSNVST 21 (371)
Q Consensus 12 ~~~~~~~~p~ 21 (371)
.+..+..+|.
T Consensus 1402 MIKq~~~d~~ 1411 (2220)
T KOG3598|consen 1402 MIKQISPDGN 1411 (2220)
T ss_pred HHHhcCCCch
Confidence 3333333433
No 93
>KOG1054|consensus
Probab=24.53 E-value=48 Score=33.29 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=28.9
Q ss_pred ChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 214 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 214 ~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
+...|+||++..+.--| -||.|.+..||+++.
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvgg 626 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGG 626 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceecc
Confidence 56799999999999988 499999999999887
No 94
>KOG1052|consensus
Probab=24.33 E-value=1.3e+02 Score=31.15 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=26.1
Q ss_pred ChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHH
Q psy6333 214 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249 (371)
Q Consensus 214 ~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~ 249 (371)
....++|.++.++..-| ++..|.+..+|++...+.
T Consensus 381 ~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~ 415 (656)
T KOG1052|consen 381 SLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWW 415 (656)
T ss_pred ecccchhhhhHHHhccC-CCccccchhhhHHHHHHH
Confidence 34456677777788888 459999999999877443
No 95
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=21.79 E-value=2.5e+02 Score=26.46 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=24.5
Q ss_pred hhhHHHHhhhhhcccccC--Ccc-cCCcc---hhhHHhHHHHHH
Q psy6333 215 IPETFWWAGITMTTVGYG--DIC-PTTPL---GKMIGSNQMRRE 252 (371)
Q Consensus 215 ~~~s~y~~~~t~tTvGyG--di~-p~t~~---~~~~~~~~~~~~ 252 (371)
+.++++=++..++|||.+ ..+ +.+.. ++++.+..|..+
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 688999999999998755 312 33444 899999888865
No 96
>COG3817 Predicted membrane protein [Function unknown]
Probab=21.43 E-value=1.7e+02 Score=26.16 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=28.1
Q ss_pred cCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 212 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
...+..+.+|..-.+|-+| ||..|.-..|-++..
T Consensus 30 p~r~~t~~FW~l~~~tFl~-g~~lp~~viG~ivil 63 (313)
T COG3817 30 PVRFGTGLFWGLFSLTFLG-GDRLPNIVIGLIVIL 63 (313)
T ss_pred CceecchHHHHHHHHHHhc-cccccchhHhHHHHH
Confidence 3677889999999999988 899998888776655
No 97
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=21.34 E-value=5e+02 Score=21.89 Aligned_cols=38 Identities=8% Similarity=-0.115 Sum_probs=30.6
Q ss_pred CCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHh
Q psy6333 209 DTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246 (371)
Q Consensus 209 ~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~ 246 (371)
+++-.+|.|-+|++++.-||-+-.|+.+.|..-|-...
T Consensus 127 ~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl 164 (180)
T PF07077_consen 127 GDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVL 164 (180)
T ss_pred CCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHH
Confidence 34456899999999999999888899999886555444
No 98
>KOG4016|consensus
Probab=20.93 E-value=5.6e+02 Score=22.28 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=16.4
Q ss_pred chhhhhcccchhhHHHHHHHHHHHH
Q psy6333 95 EKWKFFKGGLNVIDLLAIMPYYISL 119 (371)
Q Consensus 95 ~~~~y~~~~~~~iDli~vip~~i~~ 119 (371)
++..|++.+..++-+++.+-.++.+
T Consensus 16 D~~tF~rkP~ti~R~~~~lFsliVf 40 (233)
T KOG4016|consen 16 DPVTFLRKPQTILRVVSWLFSLIVF 40 (233)
T ss_pred ChHHHhcCchhHHHHHHHHHHHhhe
Confidence 4567788877777777766555443
No 99
>KOG2568|consensus
Probab=20.48 E-value=8.7e+02 Score=24.35 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy6333 148 QVFRIMRILRILK 160 (371)
Q Consensus 148 ~~lrllRllri~~ 160 (371)
.+-+.+|.+|+-|
T Consensus 361 SL~~Tlk~Lr~rR 373 (518)
T KOG2568|consen 361 SLAKTLKKLRLRR 373 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 100
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=20.42 E-value=3.1e+02 Score=19.80 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=11.0
Q ss_pred CcCChhhHHHHhhhh
Q psy6333 211 KFVSIPETFWWAGIT 225 (371)
Q Consensus 211 ~~~~~~~s~y~~~~t 225 (371)
.+.+++-++|++.+-
T Consensus 40 ~~~GfPlgfw~aaQG 54 (81)
T PF13937_consen 40 TFGGFPLGFWFAAQG 54 (81)
T ss_pred eeCCCChHHHHHHHh
Confidence 367888888877653
No 101
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=20.23 E-value=5e+02 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=11.3
Q ss_pred Eecccc-hhhHhhhhchhhH
Q psy6333 272 SFHHVN-LRDAFAKSMDLID 290 (371)
Q Consensus 272 ~~~~~~-l~~~~~~~~~~~~ 290 (371)
.|++.+ +...+..+|..+.
T Consensus 264 ~cnntraV~k~~~~~m~k~~ 283 (391)
T smart00435 264 LCNHQRTVSKTHEKSMEKLQ 283 (391)
T ss_pred HhCCCCCCCCchHHHHHHHH
Confidence 377654 5666766764443
No 102
>PRK11281 hypothetical protein; Provisional
Probab=20.01 E-value=1.2e+03 Score=25.97 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhc
Q psy6333 78 CITWFSVEYLLRLGA 92 (371)
Q Consensus 78 ~~~iF~~d~~lr~~~ 92 (371)
...++.+.++.++..
T Consensus 586 ~~~w~~~~~~~~~~~ 600 (1113)
T PRK11281 586 ALFWLVFATCYRVLR 600 (1113)
T ss_pred HHHHHHHHHHHHHhC
Confidence 345556666666543
Done!