Query psy6333
Match_columns 371
No_of_seqs 396 out of 2354
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 23:44:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 100.0 2E-37 6.7E-42 303.5 20.9 260 5-277 160-454 (514)
2 1orq_C Potassium channel; volt 100.0 2.4E-30 8.2E-35 228.1 19.0 196 30-252 7-203 (223)
3 3beh_A MLL3241 protein; transm 100.0 1.7E-29 5.9E-34 238.1 8.0 189 30-249 7-196 (355)
4 3rvy_A ION transport protein; 99.9 6.8E-28 2.3E-32 220.2 9.7 199 8-250 18-222 (285)
5 4dxw_A Navrh, ION transport pr 99.9 7.3E-24 2.5E-28 187.2 10.7 176 30-235 11-186 (229)
6 2a9h_A Voltage-gated potassium 99.8 6.1E-20 2.1E-24 150.6 8.2 66 187-252 57-122 (155)
7 2ih3_C Voltage-gated potassium 99.7 2.3E-18 7.8E-23 135.9 8.3 97 146-252 3-99 (122)
8 1ors_C Potassium channel; volt 99.7 3.9E-18 1.3E-22 136.6 8.9 125 30-182 5-129 (132)
9 2kyh_A KVAP, voltage-gated pot 99.6 1.2E-15 4.2E-20 123.7 7.2 131 8-177 9-139 (147)
10 3eff_K Voltage-gated potassium 99.6 4.5E-14 1.5E-18 114.2 13.3 73 180-252 6-78 (139)
11 2k1e_A Water soluble analogue 99.5 9.8E-15 3.3E-19 111.5 7.9 68 185-252 11-78 (103)
12 4h33_A LMO2059 protein; bilaye 99.5 6.1E-14 2.1E-18 112.7 7.4 58 190-252 24-81 (137)
13 2q67_A Potassium channel prote 99.4 1.3E-12 4.3E-17 101.5 8.8 58 189-252 30-87 (114)
14 3ldc_A Calcium-gated potassium 99.4 1.2E-12 4E-17 95.4 7.3 53 193-252 13-66 (82)
15 3ouf_A Potassium channel prote 99.3 1.6E-12 5.4E-17 97.9 7.0 61 186-252 10-70 (97)
16 3vou_A ION transport 2 domain 99.3 2.6E-12 8.8E-17 104.9 8.8 60 187-252 31-90 (148)
17 1p7b_A Integral membrane chann 99.3 1.9E-12 6.6E-17 118.7 6.3 101 176-276 57-168 (333)
18 3pjs_K KCSA, voltage-gated pot 99.3 7.4E-14 2.5E-18 116.2 -4.3 63 190-252 43-105 (166)
19 1xl4_A Inward rectifier potass 99.2 1.4E-11 4.6E-16 111.9 7.8 61 190-250 58-118 (301)
20 1lnq_A MTHK channels, potassiu 99.2 5.6E-13 1.9E-17 124.1 -1.8 92 188-286 25-134 (336)
21 4gx0_A TRKA domain protein; me 99.2 4.3E-11 1.5E-15 119.2 8.9 74 213-286 50-146 (565)
22 2qks_A KIR3.1-prokaryotic KIR 99.2 6.2E-11 2.1E-15 108.4 8.3 58 191-250 55-114 (321)
23 3um7_A Potassium channel subfa 98.9 4E-09 1.4E-13 95.3 8.6 36 213-248 114-149 (309)
24 3ukm_A Potassium channel subfa 98.9 4.4E-09 1.5E-13 93.6 8.1 40 213-252 200-246 (280)
25 3sya_A G protein-activated inw 98.9 3.1E-09 1.1E-13 97.2 7.2 39 211-249 88-128 (340)
26 3um7_A Potassium channel subfa 98.8 5E-09 1.7E-13 94.7 7.9 40 213-252 223-268 (309)
27 3ukm_A Potassium channel subfa 98.8 5.1E-09 1.7E-13 93.2 7.6 38 212-249 91-128 (280)
28 3spc_A Inward-rectifier K+ cha 98.7 9.4E-09 3.2E-13 94.1 6.3 40 211-250 91-132 (343)
29 4f4l_A ION transport protein; 96.1 0.0033 1.1E-07 47.9 3.2 56 179-234 3-58 (112)
30 2r9r_B Paddle chimera voltage 91.3 4.3 0.00015 39.2 14.5 21 101-121 238-258 (514)
31 4dxw_A Navrh, ION transport pr 88.3 4.8 0.00016 34.1 11.1 85 149-234 97-181 (229)
32 2lcm_A Voltage-dependent N-typ 76.1 1.8 6E-05 23.6 2.1 21 147-167 6-26 (28)
33 3rvy_A ION transport protein; 75.2 1.6 5.5E-05 38.5 2.9 18 104-121 63-80 (285)
34 2kyh_A KVAP, voltage-gated pot 74.0 22 0.00075 27.8 9.0 20 147-166 106-125 (147)
35 3kg2_A Glutamate receptor 2; I 72.0 2.5 8.6E-05 43.1 3.8 34 214-248 563-596 (823)
36 3beh_A MLL3241 protein; transm 70.9 5.7 0.0002 36.1 5.7 9 70-78 73-81 (355)
37 1ors_C Potassium channel; volt 54.1 69 0.0023 24.2 11.1 23 147-169 91-113 (132)
38 1qg9_A Protein (sodium channel 48.4 5.3 0.00018 21.3 0.6 19 76-94 4-22 (26)
39 4ady_A RPN2, 26S proteasome re 27.2 14 0.00047 38.4 0.2 11 222-232 667-677 (963)
40 3pjz_A Potassium uptake protei 22.1 2.1E+02 0.0071 27.2 7.3 40 213-252 422-467 (494)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=100.00 E-value=2e-37 Score=303.46 Aligned_cols=260 Identities=46% Similarity=0.751 Sum_probs=199.0
Q ss_pred cchhHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCC-------------------CCC
Q psy6333 5 SHIDIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKA-------------------GNP 65 (371)
Q Consensus 5 ~~~~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~-------------------~~~ 65 (371)
++.++|+++|.++++|.||.+ +++|+++++++|++|++++++++++++...... ...
T Consensus 160 p~~~~r~~lw~l~e~p~sS~~----a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2r9r_B 160 PENEFQRQVWLLFEYPESSGP----ARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQST 235 (514)
T ss_dssp CSCSSHHHHHHTTTCTTSCHH----HHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCT
T ss_pred chHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence 456789999999999999988 999999999999999999999999876443100 001
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHH
Q psy6333 66 IDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRR 145 (371)
Q Consensus 66 ~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (371)
.....+.++|.++.++|++|+++|+++++.+.+|++++||++|+++++|+++.+........ ...+...+.
T Consensus 236 ~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~---------~~~~~~~~~ 306 (514)
T 2r9r_B 236 SFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKS---------VLQFQNVRR 306 (514)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCS---------HHHHHTTHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhcccc---------chhhhhHHH
Confidence 13567889999999999999999999999989999999999999999999988776433211 001222246
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhh
Q psy6333 146 VVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGIT 225 (371)
Q Consensus 146 ~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t 225 (371)
+++++|++|++|++|+.++..+++.+..++..+...+..+++++++++++||+++|+.++..++++|.++++|+||+++|
T Consensus 307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT 386 (514)
T 2r9r_B 307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVS 386 (514)
T ss_dssp HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeE
Confidence 78999999999999999999999999999999999998888888888999999999998888888999999999999999
Q ss_pred hcccccCCcccCCcchhhHHhHHHHH----------------HHHHHHHHHHHHHhhCCCeEEecccc
Q psy6333 226 MTTVGYGDICPTTPLGKMIGSNQMRR----------------EKALKRREAMERAKREGSIVSFHHVN 277 (371)
Q Consensus 226 ~tTvGyGdi~p~t~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (371)
||||||||++|.|+.|+++++..+.. ....++++........+|+++||+..
T Consensus 387 ~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~ 454 (514)
T 2r9r_B 387 MTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIP 454 (514)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred EEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCc
Confidence 99999999999999999988822211 11112222333345578999998866
No 2
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.97 E-value=2.4e-30 Score=228.08 Aligned_cols=196 Identities=22% Similarity=0.342 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHH
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 109 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDl 109 (371)
++.|++++++++++|++.+++++.+...... ...+.++|.+++++|++|+++|+++++++++|+++ |++|+
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~~~~~~~~-------~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y~~~--~iiDl 77 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEI 77 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHHHHTTCT-------TTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH--HHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcccChhh-------hhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH--hHHHH
Confidence 5568889999999999999999876654433 57889999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q psy6333 110 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHS-TGLQSLGFTLRNSYKELGLLMLF 188 (371)
Q Consensus 110 i~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~-~~l~~l~~~l~~~~~~l~~l~~~ 188 (371)
++++|+++...... . .+... .++++|++|++|++|+.+.. ...+.+...+.. ..+..++++
T Consensus 78 lailP~~~~~~~~~-~------------~~~~~---~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~ 139 (223)
T 1orq_C 78 PALVPAGLLALIEG-H------------LAGLG---LFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGA 139 (223)
T ss_dssp TTHHHHHHHHHHHH-H------------HHTTT---CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-c------------hhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99999987664210 0 00111 24444444444444444422 223334333332 235556666
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 189 LAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
++++++++|++.|..|++++++++.+|++|+||+++|+|||||||++|.|+.||++++..|..+
T Consensus 140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G 203 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHH
Confidence 6777788888889998877778889999999999999999999999999999999999777643
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=1.7e-29 Score=238.10 Aligned_cols=189 Identities=25% Similarity=0.343 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHH
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 109 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDl 109 (371)
+++|++++++++++|+++++++++++..... ...+.+++.++.++|++|+++|++.++.+..|++++||++|+
T Consensus 7 s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~~-------~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~~~~~~~~~i~Dl 79 (355)
T 3beh_A 7 LRIYAPLNAVLAAPGLLAVAALTIPDMSGRS-------RLALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDV 79 (355)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTSSSCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCSCSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccchhhhH-------HHHHHHHHhHHHHHHHHHHHHhcccccccceeccCcchHHHH
Confidence 3347889999999999999999988764433 245666777777789999999999888877899999999999
Q ss_pred HHH-HHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6333 110 LAI-MPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLF 188 (371)
Q Consensus 110 i~v-ip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~ 188 (371)
+++ +|++..+.. . ++.+|++|++|++|+.|+...++.+...+..+...+..++++
T Consensus 80 ~~i~~p~~~~~~~-----~-------------------~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~ 135 (355)
T 3beh_A 80 LAVLVPLAAFLLD-----G-------------------SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTL 135 (355)
T ss_dssp HHHHHHHHHHHSC-----C-------------------SGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----c-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 587654321 0 123455555666666667778888888887778888888888
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHH
Q psy6333 189 LAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~ 249 (371)
++++++++|+++|..++..++++|.+|++|+||+++|||||||||++|.|+.|+++++..|
T Consensus 136 ~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~ 196 (355)
T 3beh_A 136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVM 196 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHH
Confidence 8888999999999999988888899999999999999999999999999999999988333
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.95 E-value=6.8e-28 Score=220.20 Aligned_cols=199 Identities=17% Similarity=0.246 Sum_probs=167.3
Q ss_pred hHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy6333 8 DIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYL 87 (371)
Q Consensus 8 ~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~ 87 (371)
.+|++++.++++ +.|++++++++++|++++++++++...... ...+.++|.++.++|++|++
T Consensus 18 ~~r~~~~~i~~~-----------~~f~~~i~~li~l~~i~~~~~~~~~~~~~~-------~~~l~~~e~~~~~iF~~E~~ 79 (285)
T 3rvy_A 18 HMYLRITNIVES-----------SFFTKFIIYLIVLNGITMGLETSKTFMQSF-------GVYTTLFNQIVITIFTIEII 79 (285)
T ss_dssp -CHHHHHHHHTS-----------HHHHHHHHHHHHHHHHHHHHTTCTTHHHHS-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-----------HHHHHHHHHHHHHHHHHHHHhcCcccchHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 368889998654 468899999999999999999987444333 47789999999999999999
Q ss_pred HHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6333 88 LRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTG 167 (371)
Q Consensus 88 lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~ 167 (371)
+|+++++ .+|++++||++|+++++|+++... . .++++|++|++|++|+.+...+
T Consensus 80 lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~~-----~-------------------~~~~lr~~RilR~lrl~~~~~~ 133 (285)
T 3rvy_A 80 LRIYVHR--ISFFKDPWSLFDFFVVAISLVPTS-----S-------------------GFEILRVLRVLRLFRLVTAVPQ 133 (285)
T ss_dssp HHHHTTG--GGGGGCHHHHHHHHHHHHHHSCSS-----S-------------------SCTHHHHHGGGGGGHHHHSSTT
T ss_pred HHHHHHh--HHHHcCChHHhHHHHHHHHHHccc-----c-------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 689999999999999999875321 0 1346777778888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccC-Ccc-cCCcch----
Q psy6333 168 LQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYG-DIC-PTTPLG---- 241 (371)
Q Consensus 168 l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyG-di~-p~t~~~---- 241 (371)
++.+..++..+.+.+..+++++++++++||++++.++++.++++|+++++|+||+++|+||+||| |+. |.+..|
T Consensus 134 l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~ 213 (285)
T 3rvy_A 134 MRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAW 213 (285)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999998888888888999999999999999999999 986 888876
Q ss_pred hhHHhHHHH
Q psy6333 242 KMIGSNQMR 250 (371)
Q Consensus 242 ~~~~~~~~~ 250 (371)
+++++..+.
T Consensus 214 ~~f~~~~~i 222 (285)
T 3rvy_A 214 VFFIPFIFV 222 (285)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 444444433
No 5
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.90 E-value=7.3e-24 Score=187.24 Aligned_cols=176 Identities=17% Similarity=0.256 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHH
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 109 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDl 109 (371)
++.|++++.++|++|++.+++++++..... ...+..+|.++.++|++|+++|+++.+.+.+|++++||++|+
T Consensus 11 ~~~f~~~i~~~I~ln~i~l~~~~~~~~~~~--------~~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni~D~ 82 (229)
T 4dxw_A 11 NRIFQFTVVSIIILNAVLIGATTYELDPLF--------LETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDT 82 (229)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTCCSSSCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHccCCCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHHHHH
Confidence 678999999999999999999997643322 367899999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6333 110 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFL 189 (371)
Q Consensus 110 i~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~ 189 (371)
++++|+++.... . ..++++|++|++|++|+.++.++++.+..++..+.+.+..+.+++
T Consensus 83 ~~v~~~~i~~~~-----~-----------------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l 140 (229)
T 4dxw_A 83 VIVAISLIPIPN-----N-----------------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLL 140 (229)
T ss_dssp HHHHHTTCC------------------------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCc-----c-----------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987653311 0 124566778888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcc
Q psy6333 190 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDIC 235 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~ 235 (371)
++++++||.+++..+++.++++|+++++|+||.++++||.||+|+.
T Consensus 141 ~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~ 186 (229)
T 4dxw_A 141 FIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVM 186 (229)
T ss_dssp HHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999998888899999999999999999999999974
No 6
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.80 E-value=6.1e-20 Score=150.56 Aligned_cols=66 Identities=35% Similarity=0.601 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 187 LFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+++++++++++.+.|..|+..+++.+.+|++|+||+++|+|||||||++|.|+.||++++..+...
T Consensus 57 ~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~G 122 (155)
T 2a9h_A 57 VLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAG 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHH
Confidence 344455667777888888887788899999999999999999999999999999999999777744
No 7
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.75 E-value=2.3e-18 Score=135.91 Aligned_cols=97 Identities=30% Similarity=0.515 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhh
Q psy6333 146 VVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGIT 225 (371)
Q Consensus 146 ~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t 225 (371)
++|++|++|++|++ +.|+.. .+... .+...+..+++++++++++.|..|++.+++.+.+|.+|+||+++|
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~~~-------~l~~~--~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T 72 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRHGS-------ALHWR--AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACET 72 (122)
T ss_dssp -----------------------------CHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhHH-------HHHHH--HHHHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeee
Confidence 35666777777766 555511 11111 122233334445566777778888887788889999999999999
Q ss_pred hcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 226 MTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 226 ~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+|||||||++|.|+.||++++..+...
T Consensus 73 ~tTvGyGDi~P~t~~gr~~~~~~~~~G 99 (122)
T 2ih3_C 73 ATTVAYGDLYPVTLWGRLVAVVVMVAG 99 (122)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred eeeeecCCCCCCCccHHHHHHHHHHHH
Confidence 999999999999999999999666533
No 8
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.74 E-value=3.9e-18 Score=136.58 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccchhhHH
Q psy6333 30 FQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 109 (371)
Q Consensus 30 ~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~lr~~~~~~~~~y~~~~~~~iDl 109 (371)
++.|++.+++++++|+++++++++++..... ...+.++|.++.++|++|+++|+++++++.+|++ ||++|+
T Consensus 5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~~~-------~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~--~niiDl 75 (132)
T 1ors_C 5 HPLVELGVSYAALLSVIVVVVEYTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK--KTLYEI 75 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTT--TCGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHH
Confidence 6789999999999999999999988765433 4678899999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy6333 110 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 182 (371)
Q Consensus 110 i~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l 182 (371)
++++|+++.... + ..++.+|++|++|++|++|+.++..+++.+..++.++.+.+
T Consensus 76 lailp~~~~~~~-~------------------~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l 129 (132)
T 1ors_C 76 PALVPAGLLALI-E------------------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp GGGSCHHHHHHH-H------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-c------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 999999887765 1 11256788999999999999999999999999999888775
No 9
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.60 E-value=1.2e-15 Score=123.66 Aligned_cols=131 Identities=13% Similarity=0.167 Sum_probs=99.6
Q ss_pred hHHHHHHhhhcCCCCccCccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy6333 8 DIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYL 87 (371)
Q Consensus 8 ~~r~~~~~~~~~p~s~~~~~~~~~~~~~~~~~liil~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~iF~~d~~ 87 (371)
..|+++++++++| .|++.+.+++++|++++++++.+...... ...+..+|.++.++|++|++
T Consensus 9 ~~~~~~~~~~e~~-----------~f~~~i~~lil~sv~~v~~et~~~i~~~~-------~~~~~~id~~~~~iF~~Ey~ 70 (147)
T 2kyh_A 9 GRVRNIGDVMEHP-----------LVELGVSYAALLSVIVVVVEYTMQLSGEY-------LVRLYLVDLILVIILWADYA 70 (147)
T ss_dssp HHHHHHHHHHTCH-----------HHHHHHHHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHHHhHhhchhH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4688899997776 36677899999999999999887654433 46788999999999999999
Q ss_pred HHhhcccchhhhhcccchhhHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6333 88 LRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTG 167 (371)
Q Consensus 88 lr~~~~~~~~~y~~~~~~~iDli~vip~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrllRllri~~l~~~~~~ 167 (371)
+|++.++++.+|+++ |++|+++++|++..+... ..++++|++|++|++|++++.+....
T Consensus 71 lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~-------------------~~lr~lRvlRllRv~Rllrl~r~~~~ 129 (147)
T 2kyh_A 71 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE-------------------GHLAGLGLFRLVRLLRFLRILLIISR 129 (147)
T ss_dssp HHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH-------------------HHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 899999999998765431 11255666666666666666666555
Q ss_pred HHHHHHHHHH
Q psy6333 168 LQSLGFTLRN 177 (371)
Q Consensus 168 l~~l~~~l~~ 177 (371)
...+..++..
T Consensus 130 ~~~l~~al~~ 139 (147)
T 2kyh_A 130 GSKFLSAIAD 139 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.56 E-value=4.5e-14 Score=114.17 Aligned_cols=73 Identities=32% Similarity=0.579 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 180 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 180 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+.+...++++++++++++++++..++..+++.+.+|.+|+||+++|+|||||||++|.|+.||++++..+..+
T Consensus 6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G 78 (139)
T 3eff_K 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 78 (139)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHH
Confidence 3444455566666777888888888887888889999999999999999999999999999999999887744
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.55 E-value=9.8e-15 Score=111.54 Aligned_cols=68 Identities=31% Similarity=0.428 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 185 LMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
.++++++++++++++.+..|+..+++.+.+|.+|+||+++|+|||||||++|.|+.||++++..+...
T Consensus 11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G 78 (103)
T 2k1e_A 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHH
Confidence 44445555667788888888887788889999999999999999999999999999999999777644
No 12
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.47 E-value=6.1e-14 Score=112.71 Aligned_cols=58 Identities=40% Similarity=0.748 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 190 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+++++++++..++.+.+ +.+|++|+||+++|+|||||||++|.|+.||++++..+..+
T Consensus 24 ~~~~~~~~~~~~~~e~~-----~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g 81 (137)
T 4h33_A 24 VLLVIIIPVPMVFIEPE-----INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFG 81 (137)
T ss_dssp HHHHHHTHHHHHHHCSS-----CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHH
Confidence 33344555556665543 57899999999999999999999999999999999888754
No 13
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.38 E-value=1.3e-12 Score=101.49 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 189 LAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
++++++++++++|....+ .+|.+|+||+++|+|||||||++|.|+.||++++..+...
T Consensus 30 ~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G 87 (114)
T 2q67_A 30 LTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIG 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHH
Confidence 333445556666654332 6899999999999999999999999999999999776643
No 14
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.37 E-value=1.2e-12 Score=95.42 Aligned_cols=53 Identities=34% Similarity=0.671 Sum_probs=42.8
Q ss_pred HHHHHHHhh-hhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 193 VLIFSSLAY-FAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+++++.++| ..|+ .++.+|+||+++|+|||||||++|.|+.||++++..+...
T Consensus 13 ~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G 66 (82)
T 3ldc_A 13 VIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66 (82)
T ss_dssp HHHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHH
Confidence 334444444 5565 5999999999999999999999999999999999776533
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.34 E-value=1.6e-12 Score=97.87 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
+++++++++++++++|....+ .+|.+|+||+++|+|||||||++|.|+.||++++..+...
T Consensus 10 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G 70 (97)
T 3ouf_A 10 LFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence 333444455556666654332 6899999999999999999999999999999999666533
No 16
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.34 E-value=2.6e-12 Score=104.85 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 187 LFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
++++++++++++++|....+ .+|.+|+||+++|+|||||||++|.|+.||++++..+..+
T Consensus 31 ~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g 90 (148)
T 3vou_A 31 FVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence 33444455566666653332 6899999999999999999999999999999999888744
No 17
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.30 E-value=1.9e-12 Score=118.74 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHHHH
Q psy6333 176 RNSYKELGLLMLFLAMGVLIFSSLAYFAEKD-EHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKA 254 (371)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~~~ 254 (371)
..+...++.+++++++++.++++++|+++++ .++..+.+|.+|+||+++|+|||||||++|.|+.|+++++.++..+..
T Consensus 57 ~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~ 136 (333)
T 1p7b_A 57 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMS 136 (333)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 3344455545555444444444555766654 233446799999999999999999999999999999999855543321
Q ss_pred HHHH----------HHHHHHhhCCCeEEeccc
Q psy6333 255 LKRR----------EAMERAKREGSIVSFHHV 276 (371)
Q Consensus 255 ~~~~----------~~~~~~~~~~~~~~~~~~ 276 (371)
.-.- +...+....+|+++|++.
T Consensus 137 ~~a~~ig~i~~~~~~~~~r~~fs~~~VI~~~~ 168 (333)
T 1p7b_A 137 GIALSTGLVFARFARPRAKIMFARHAIVRPFN 168 (333)
T ss_dssp HHHHHHHHHHHHHTSCCCCCEECSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 1100 000113347899999763
No 18
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.27 E-value=7.4e-14 Score=116.24 Aligned_cols=63 Identities=33% Similarity=0.603 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH
Q psy6333 190 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~ 252 (371)
++++++++++.|..+++.+++.+.+|.+|+||+++|+|||||||++|.|+.||++++..+..+
T Consensus 43 ~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G 105 (166)
T 3pjs_K 43 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 105 (166)
T ss_dssp TTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHH
Confidence 344455566667778777777889999999999999999999999999999999999888744
No 19
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.23 E-value=1.4e-11 Score=111.91 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 190 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
++.+++||++.+..++..++..+.++++|+||+++|+|||||||++|.|+.|+++++..+.
T Consensus 58 ~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l 118 (301)
T 1xl4_A 58 LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEAL 118 (301)
T ss_dssp HHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHH
Confidence 3445677877444433344556789999999999999999999999999999999984443
No 20
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.22 E-value=5.6e-13 Score=124.13 Aligned_cols=92 Identities=22% Similarity=0.425 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhh-hhcccCCCCCcCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHH-----------------
Q psy6333 188 FLAMGVLIFSSLAY-FAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM----------------- 249 (371)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~----------------- 249 (371)
+++++++++++++| +.++ .+|.+|+||+++|+|||||||++|.|+.||++++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 97 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 97 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666 4443 5899999999999999999999999999999998211
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEecccchhhHhhhhc
Q psy6333 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSM 286 (371)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (371)
..+...++..........+|+++||.++++...++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~viI~G~G~~g~~l~~~L 134 (336)
T 1lnq_A 98 LINREQMKLMGLIDVAKSRHVVICGWSESTLECLREL 134 (336)
T ss_dssp C-----------------CEEEEESCCHHHHHHHTTG
T ss_pred HHHHHHHHHHhhhhhcccCCEEEECCcHHHHHHHHHH
Confidence 1111111111222233367999999998888876655
No 21
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.17 E-value=4.3e-11 Score=119.18 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=53.9
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHHHH------------------HHHHHHHHHHH-----HhhCCC
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRRE------------------KALKRREAMER-----AKREGS 269 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~~~------------------~~~~~~~~~~~-----~~~~~~ 269 (371)
.+|++|+||+++|+|||||||++|.|+.||++++..+... ...+++..... ....+|
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 129 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGH 129 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSC
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCe
Confidence 5899999999999999999999999999999998332211 11111111111 234789
Q ss_pred eEEecccchhhHhhhhc
Q psy6333 270 IVSFHHVNLRDAFAKSM 286 (371)
Q Consensus 270 ~~~~~~~~l~~~~~~~~ 286 (371)
+++||.++++...++.+
T Consensus 130 viI~G~g~~g~~la~~L 146 (565)
T 4gx0_A 130 ILIFGIDPITRTLIRKL 146 (565)
T ss_dssp EEEESCCHHHHHHHHHT
T ss_pred EEEECCChHHHHHHHHH
Confidence 99999999888876655
No 22
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.15 E-value=6.2e-11 Score=108.37 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhcccCCCCCcC--ChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHHH
Q psy6333 191 MGVLIFSSLAYFAEKDEHDTKFV--SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMR 250 (371)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~~ 250 (371)
+.+++||. ++.+++....++. +|.+|+||+++|+|||||||++|.|..|+++++..+.
T Consensus 55 ~~~~~fa~--~~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l 114 (321)
T 2qks_A 55 LLNTAFAT--LYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIF 114 (321)
T ss_dssp HHHHHHHH--HHHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHH
Confidence 34455552 2455554455666 9999999999999999999999999999988884443
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.88 E-value=4e-09 Score=95.32 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=33.8
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhhHHhHH
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQ 248 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~ 248 (371)
++|.+|+||+++|+|||||||++|.|..||++++..
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~ 149 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFY 149 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHH
Confidence 589999999999999999999999999999999933
No 24
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.86 E-value=4.4e-09 Score=93.65 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=35.3
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcc-------hhhHHhHHHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPL-------GKMIGSNQMRRE 252 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~-------~~~~~~~~~~~~ 252 (371)
.+|+||+||+++|+|||||||++|.|+. ||++++.++..+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHH
Confidence 7899999999999999999999999996 488888776644
No 25
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.86 E-value=3.1e-09 Score=97.23 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=33.9
Q ss_pred CcCChhhHHHHhhhhhcccccCCcccC--CcchhhHHhHHH
Q psy6333 211 KFVSIPETFWWAGITMTTVGYGDICPT--TPLGKMIGSNQM 249 (371)
Q Consensus 211 ~~~~~~~s~y~~~~t~tTvGyGdi~p~--t~~~~~~~~~~~ 249 (371)
+..++.+|+||+++|+|||||||++|. ++.|+++++.++
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~ 128 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQS 128 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHH
T ss_pred cccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHH
Confidence 467899999999999999999999997 678998888444
No 26
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.84 E-value=5e-09 Score=94.71 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.7
Q ss_pred CChhhHHHHhhhhhcccccCCcccCCcchhh------HHhHHHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGYGDICPTTPLGKM------IGSNQMRRE 252 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~------~~~~~~~~~ 252 (371)
.+|.||+||+++|+|||||||++|.+..|+. +++..+..+
T Consensus 223 ~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~G 268 (309)
T 3um7_A 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLG 268 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHH
Confidence 6899999999999999999999999999984 777555533
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.84 E-value=5.1e-09 Score=93.21 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=34.8
Q ss_pred cCChhhHHHHhhhhhcccccCCcccCCcchhhHHhHHH
Q psy6333 212 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249 (371)
Q Consensus 212 ~~~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~~ 249 (371)
-+++.+|+||+++|+|||||||++|.|+.||++++..+
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~ 128 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYS 128 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHH
Confidence 35899999999999999999999999999999999443
No 28
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.74 E-value=9.4e-09 Score=94.15 Aligned_cols=40 Identities=30% Similarity=0.382 Sum_probs=34.4
Q ss_pred CcCChhhHHHHhhhhhcccccCCcccC--CcchhhHHhHHHH
Q psy6333 211 KFVSIPETFWWAGITMTTVGYGDICPT--TPLGKMIGSNQMR 250 (371)
Q Consensus 211 ~~~~~~~s~y~~~~t~tTvGyGdi~p~--t~~~~~~~~~~~~ 250 (371)
++.++.+|+||+++|+|||||||++|. ++.|+++++.++.
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l 132 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSI 132 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHH
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999974 8899988884443
No 29
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=96.13 E-value=0.0033 Score=47.90 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcccccCCc
Q psy6333 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDI 234 (371)
Q Consensus 179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi 234 (371)
...++.+++++++++++||.++..+.++..+.+|++++.|+.-.++.+|+-||.|+
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~ 58 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMG 58 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHH
Confidence 34466677788888899999999888888888899999999999999999998753
No 30
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=91.26 E-value=4.3 Score=39.23 Aligned_cols=21 Identities=10% Similarity=0.339 Sum_probs=14.9
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q psy6333 101 KGGLNVIDLLAIMPYYISLFL 121 (371)
Q Consensus 101 ~~~~~~iDli~vip~~i~~~~ 121 (371)
...+.++|.++++-+.+.++.
T Consensus 238 ~~~l~~ie~i~~~iFtiE~il 258 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLV 258 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344668888888877766655
No 31
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=88.25 E-value=4.8 Score=34.07 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcCChhhHHHHhhhhhcc
Q psy6333 149 VFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTT 228 (371)
Q Consensus 149 ~lrllRllri~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~~t~tT 228 (371)
.++.+|++|++|..|..+..+.+..........+..+..+++++.+++.......-.-.+... ....+++..++.|+..
T Consensus 97 ~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~-~~~F~~~~~a~~~lf~ 175 (229)
T 4dxw_A 97 SFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD-PSRWGDLGISLITLFQ 175 (229)
T ss_dssp ---CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CTTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cccccCHHHHHHHHHH
Confidence 446668888888888776666555444444444444443333322222222222233334433 3445778888888877
Q ss_pred cccCCc
Q psy6333 229 VGYGDI 234 (371)
Q Consensus 229 vGyGdi 234 (371)
+-.||-
T Consensus 176 ~~t~~~ 181 (229)
T 4dxw_A 176 VLTLSS 181 (229)
T ss_dssp HHTTSS
T ss_pred HHccCC
Confidence 777663
No 32
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=76.12 E-value=1.8 Score=23.63 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q psy6333 147 VQVFRIMRILRILKLARHSTG 167 (371)
Q Consensus 147 ~~~lrllRllri~~l~~~~~~ 167 (371)
++.+|.+|++|.++.+..+++
T Consensus 6 l~~lrtlR~LRpLr~isr~~g 26 (28)
T 2lcm_A 6 IKSLRVLRVLRPLKTIKRLPK 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHHhcchHHHhhccc
Confidence 566666677777776655544
No 33
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=75.22 E-value=1.6 Score=38.55 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=10.3
Q ss_pred chhhHHHHHHHHHHHHHH
Q psy6333 104 LNVIDLLAIMPYYISLFL 121 (371)
Q Consensus 104 ~~~iDli~vip~~i~~~~ 121 (371)
+..+|.++++-+.+++..
T Consensus 63 l~~~e~~~~~iF~~E~~l 80 (285)
T 3rvy_A 63 TTLFNQIVITIFTIEIIL 80 (285)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666555544
No 34
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=74.02 E-value=22 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q psy6333 147 VQVFRIMRILRILKLARHST 166 (371)
Q Consensus 147 ~~~lrllRllri~~l~~~~~ 166 (371)
++++|++|++|++|+.+...
T Consensus 106 lr~lRvlRllRv~Rllrl~r 125 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRILL 125 (147)
T ss_dssp HHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665443
No 35
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=71.99 E-value=2.5 Score=43.13 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=24.3
Q ss_pred ChhhHHHHhhhhhcccccCCcccCCcchhhHHhHH
Q psy6333 214 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQ 248 (371)
Q Consensus 214 ~~~~s~y~~~~t~tTvGyGdi~p~t~~~~~~~~~~ 248 (371)
++..++|+++.+++..| ++..|.+..+|++.+.+
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w 596 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVW 596 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHH
Confidence 46689999999999999 78999999999988833
No 36
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=70.88 E-value=5.7 Score=36.06 Aligned_cols=9 Identities=0% Similarity=0.146 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q psy6333 70 KLAIVEAVC 78 (371)
Q Consensus 70 ~~~~i~~i~ 78 (371)
.+.++|.+.
T Consensus 73 ~~~i~Dl~~ 81 (355)
T 3beh_A 73 PKIAIDVLA 81 (355)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHHHH
Confidence 344455443
No 37
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=54.07 E-value=69 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHH
Q psy6333 147 VQVFRIMRILRILKLARHSTGLQ 169 (371)
Q Consensus 147 ~~~lrllRllri~~l~~~~~~l~ 169 (371)
++++|++|++|++|+.+......
T Consensus 91 l~~lr~lRllRv~Rvlkl~r~~~ 113 (132)
T 1ors_C 91 LAGLGLFRLVRLLRFLRILLIIS 113 (132)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777766544433
No 38
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=48.43 E-value=5.3 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhccc
Q psy6333 76 AVCITWFSVEYLLRLGASP 94 (371)
Q Consensus 76 ~i~~~iF~~d~~lr~~~~~ 94 (371)
+++..+|++|.++++.+.+
T Consensus 4 ~~F~~IYtfE~liKi~ArG 22 (26)
T 1qg9_A 4 YTFTGIYTFESLIKILARX 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHTC-
T ss_pred EEeeHHHHHHHHHHHHHhh
Confidence 4678999999999987654
No 39
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.23 E-value=14 Score=38.39 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.4
Q ss_pred hhhhhcccccC
Q psy6333 222 AGITMTTVGYG 232 (371)
Q Consensus 222 ~~~t~tTvGyG 232 (371)
|+..|..||-|
T Consensus 667 Ai~ALG~Ig~g 677 (963)
T 4ady_A 667 AMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHhcC
Confidence 33344344433
No 40
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=22.10 E-value=2.1e+02 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=30.4
Q ss_pred CChhhHHHHhhhhhccccc--CCcc----cCCcchhhHHhHHHHHH
Q psy6333 213 VSIPETFWWAGITMTTVGY--GDIC----PTTPLGKMIGSNQMRRE 252 (371)
Q Consensus 213 ~~~~~s~y~~~~t~tTvGy--Gdi~----p~t~~~~~~~~~~~~~~ 252 (371)
.++.+|+.=++.+++|||- |.+. ..++.++++.+..|...
T Consensus 422 ~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 422 MDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG 467 (494)
T ss_dssp SCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHH
Confidence 4578899999999999884 4332 45677999999888855
Done!