RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6333
(371 letters)
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 121 bits (305), Expect = 6e-33
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 30/189 (15%)
Query: 73 IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 132
I++ V F++E LL+ A K K+F+ N++D L ++P +SL L S
Sbjct: 1 ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSG--- 57
Query: 133 VQTRTDQFQDVRRVVQVFRIMRILRILKLAR-HSTGLQSLGFTLRNSYKELGLLMLFLAM 191
+ RV+++ R++R+LR+L+ T LQSLG +L+ S L LL+L L
Sbjct: 58 ----------LLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLK-SLLNLLLLLLLLLF 106
Query: 192 GVLIFSSLAYFAEKDEHDTK----------FVSIPETFWWAGITMTTVGYGDI-----CP 236
I + E D+ K F S E W T+TT G+GD+ P
Sbjct: 107 IFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVP 166
Query: 237 TTPLGKMIG 245
T LGK+
Sbjct: 167 GTVLGKIFF 175
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 59.9 bits (146), Expect = 9e-12
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 188 FLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
L + VLIF ++ Y E++ + +++ +T+TT+GYGDI P T G++
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGW---DFLDALYFSFVTLTTIGYGDIVPLTDAGRLF 54
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 60.0 bits (146), Expect = 6e-10
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ E+K K KK KR ++KEKEK+K K KK+ R K K+RK +E
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 54.9 bits (133), Expect = 3e-08
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R K K +KK + KK KR +KK K+K++ K KK+ + K KR+K
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPK--VKKRHRDTKNIGKRRK 427
Score = 53.8 bits (130), Expect = 7e-08
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ + +KK + K+ K EKK+K+++K K KK+ + K K+RK
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 52.6 bits (127), Expect = 1e-07
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + EKK K KK K+ +KK+++K+K K +++ + K K+ K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 52.6 bits (127), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + K ++K + +K K+ +K++K+K K K KK+ R K K K
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 52.3 bits (126), Expect = 2e-07
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK-RKKKRKKKKRKKKKRKKEEKK 356
I E R + + +KK + KK K +KK+++K+K + KKR + + KR+K
Sbjct: 373 IDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 51.5 bits (124), Expect = 3e-07
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ K +++ K +K K+ ++KEK+K+K K KKR + K +++K E+
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 51.1 bits (123), Expect = 4e-07
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R K K ++K K +K K+ KK+K K+K K KKR + + K++K +E
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI--GKRRKPSGTSEE 434
Score = 47.6 bits (114), Expect = 5e-06
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K R E + K + ++K + KK K+ +K+EK+K+K K KK+ + K
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 34.5 bits (80), Expect = 0.077
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E+ K R + + K K KK + ++ K+ +KK+KEK K +
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 32.2 bits (74), Expect = 0.46
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
L + ++++ K+K K K++ + K K++K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 59.5 bits (145), Expect = 9e-10
Identities = 37/140 (26%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 240 LGKMIGSNQMRREKALKRREA--MERAKREGSIVSF------HHVNLRDAFAKSMDLIDV 291
L K + R A K E + K ++ F H+ L A ++L +
Sbjct: 338 LSKTKEKRETRDSIAKKIAEKLHTSKRKVRREVLPFLSIIFKHNPELAARLAAFLELTEE 397
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ E L K+ K+ KK ++ K+++ ++KEKKKK KK++++ +++K KK++ K
Sbjct: 398 EI--EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
+EE+++ +++K+++E++KK+
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 55.9 bits (135), Expect = 3e-09
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ + K + +E+EKK+KK+KK+ +K+K++KK +K+K + + KKKKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 361 KKKKK 365
KKKKK
Sbjct: 189 KKKKK 193
Score = 54.7 bits (132), Expect = 8e-09
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E + +K+ K +++ E+E+KK+K+KKK+ KK++K+KK KK+K + + KKK
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Query: 360 KKKKKK 365
KKKKKK
Sbjct: 187 KKKKKK 192
Score = 51.6 bits (124), Expect = 8e-08
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ + K K +++ + +++ KK+K+KKK KK++K+KK KKE+ + K KKKK+K+
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Query: 369 KKR 371
KK+
Sbjct: 191 KKK 193
Score = 48.2 bits (115), Expect = 1e-06
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR---KKKKRKKKKRKKEEKKKKKK 360
+ + K K +++ + + ++KK KKK+ KK+K++KK +K++ + K
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Query: 361 KKKKKEKRKK 370
KKKKK+K+KK
Sbjct: 184 KKKKKKKKKK 193
Score = 42.4 bits (100), Expect = 1e-04
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++ + E + +K+KKK+K +K++KEK+ KK+K + K KK+KKKK+KK
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 37.8 bits (88), Expect = 0.004
Identities = 15/49 (30%), Positives = 33/49 (67%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + +++ + +K + + ++KK KK++K+ KK+KK+KK+K++K
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 35.8 bits (83), Expect = 0.018
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + +K+ K +K+ +++ KKE+KKKK+ KK+KKEK+ K+
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 34.7 bits (80), Expect = 0.037
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E + + +K+ K K+ + +++++K+++KKK+ KK+KK++K KK
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 56.4 bits (136), Expect = 9e-09
Identities = 25/71 (35%), Positives = 52/71 (73%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K E + ++K+K + K +K+K+KEK K++ K +K K++ K+K+ K+K K++EKK ++
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Query: 361 KKKKKEKRKKR 371
+ +++EK+++R
Sbjct: 158 RDREEEKKRER 168
Score = 56.4 bits (136), Expect = 1e-08
Identities = 23/72 (31%), Positives = 51/72 (70%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E ++ K++ K ++K+KK K KE+ K ++ K++ K+KR K+++K+K KK E+ + +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Query: 360 KKKKKKEKRKKR 371
+++KK+E+ + +
Sbjct: 161 EEEKKRERVRAK 172
Score = 55.3 bits (133), Expect = 2e-08
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K ++ + + K + K K++ ++EKKKKK K K+ K RK K+ K+KR +EK+K+K
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Query: 360 KKKKKKEKRKKR 371
+KK ++ + ++
Sbjct: 151 EKKVEEPRDREE 162
Score = 54.5 bits (131), Expect = 4e-08
Identities = 24/72 (33%), Positives = 49/72 (68%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E ++RK +++ K+++ ++K KEKEKK ++ + ++ +KKR++ + K + +K +KK
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Query: 360 KKKKKKEKRKKR 371
KKK+ E+ K+R
Sbjct: 186 KKKEPPEEEKQR 197
Score = 54.5 bits (131), Expect = 5e-08
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EKR K ++K+K++K + + +E+EKK+++ + K R KK KKK KK++ E++K+++
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQ 198
Query: 361 KKKKKEKRKKR 371
++ K K
Sbjct: 199 AAREAVKGKPE 209
Score = 54.1 bits (130), Expect = 5e-08
Identities = 24/72 (33%), Positives = 52/72 (72%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E+ + +++KKK+K K + K RK KE+ K+KR K+++K+++KK + + R++E+K+++
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Query: 360 KKKKKKEKRKKR 371
+ K + +K K+
Sbjct: 170 RAKSRPKKPPKK 181
Score = 53.7 bits (129), Expect = 6e-08
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ K K + K ++ K + ++++K K++ K++K+KKK++ KEE K +K K++
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 365 KEKRKKR 371
KEKR +
Sbjct: 138 KEKRPPK 144
Score = 53.7 bits (129), Expect = 7e-08
Identities = 24/72 (33%), Positives = 47/72 (65%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + + K+ K + +++ KEKE+ K+++KKKK K K + K RK K+ KE++ K+
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Query: 360 KKKKKKEKRKKR 371
K+K+K++K ++
Sbjct: 146 KEKEKEKKVEEP 157
Score = 53.4 bits (128), Expect = 9e-08
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K E K RK K++ K KR KEKEK+K+K+ ++ R ++ +KK+ + + + + +K K
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPP-KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Query: 359 KKKKKKKEKRKKR 371
KK KK++ +
Sbjct: 181 KKPPNKKKEPPEE 193
Score = 52.6 bits (126), Expect = 1e-07
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR-----KKKKRKKEEK 355
EK K K K ++ K KE++K+K + K+ KKK+K+K + +K K + +EK
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Query: 356 KKKKKKKKKKEKRKK 370
+ K+K+K+KEK+ +
Sbjct: 141 RPPKEKEKEKEKKVE 155
Score = 52.6 bits (126), Expect = 2e-07
Identities = 22/71 (30%), Positives = 49/71 (69%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K E+K++K+K K + K +K KE+ K+K+ K+K+++K++K ++ + ++ +K+ ++ + K
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Query: 361 KKKKKEKRKKR 371
+ KK +KK
Sbjct: 173 SRPKKPPKKKP 183
Score = 51.8 bits (124), Expect = 3e-07
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK--RKKKKRKKEEKKK 357
+ +E K++KK+K ++ + ++ ++E K+K+ K+K K+K KK + R +++ KK E+ +
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Query: 358 KKKKKKKKEKRKKR 371
K + KK K+K
Sbjct: 171 AKSRPKKPPKKKPP 184
Score = 51.4 bits (123), Expect = 4e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + K K + ++E+++K++ +++KK+KK++ K++ K +K K+E K+K+
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Query: 361 KKKKKEKRKKR 371
K+K+KEK KK
Sbjct: 144 KEKEKEKEKKV 154
Score = 51.0 bits (122), Expect = 4e-07
Identities = 22/71 (30%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-KKRKKKKRKKEEKKKKKK 360
+E K K++ K K + ++EK+KKK+K K++ + +K K+ K K+ ++KE++K+KK
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Query: 361 KKKKKEKRKKR 371
++ + + +K+
Sbjct: 155 EEPRDREEEKK 165
Score = 51.0 bits (122), Expect = 5e-07
Identities = 20/72 (27%), Positives = 48/72 (66%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K++ K +++ K RK K + ++++ K+K+++K+K+ ++ + ++ +KK+ + K + K
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Query: 360 KKKKKKEKRKKR 371
K KKK KK+
Sbjct: 177 KPPKKKPPNKKK 188
Score = 49.9 bits (119), Expect = 1e-06
Identities = 21/71 (29%), Positives = 46/71 (64%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++++ ++ K +K ++ ++KR KEK+K+K KK + + R+++K++++ R K KK
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP 179
Query: 360 KKKKKKEKRKK 370
KKK +K++
Sbjct: 180 KKKPPNKKKEP 190
Score = 49.5 bits (118), Expect = 1e-06
Identities = 19/71 (26%), Positives = 47/71 (66%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK+++K + K++ + RK K+ ++++ K+++K+K KK + + R+++K+++ + K +
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175
Query: 361 KKKKKEKRKKR 371
KK K+K +
Sbjct: 176 KKPPKKKPPNK 186
Score = 49.1 bits (117), Expect = 2e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KR K K K K K + E K++ K+K++ K+ KKKK++K K + +++K K++
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 362 KKKKEKRKKR 371
K+K+ ++K
Sbjct: 138 KEKRPPKEKE 147
Score = 46.0 bits (109), Expect = 2e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+EK + K +K ++ R R+ +K++E+ + K + KK +KK KKK ++ K+ + ++
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Query: 360 KKKKKKEKRKKR 371
K K +E
Sbjct: 204 VKGKPEEPDVNE 215
Score = 44.1 bits (104), Expect = 7e-05
Identities = 17/72 (23%), Positives = 45/72 (62%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+EK+ + R +++++KR+R + K + KK K+K +KK+ +++++++ ++ K K +
Sbjct: 150 KEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209
Query: 360 KKKKKKEKRKKR 371
+ +E+ K+
Sbjct: 210 EPDVNEEREKEE 221
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ K + KR EK K K K K+ K + K+++++KE+ K++KKKKK+K K +
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 370 KR 371
+
Sbjct: 128 PK 129
Score = 40.3 bits (94), Expect = 0.001
Identities = 16/72 (22%), Positives = 43/72 (59%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R++ E K+R++ + + R +K K+K KKK ++ K+++ ++ K K ++ + +++
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEER 217
Query: 360 KKKKKKEKRKKR 371
+K++ K ++
Sbjct: 218 EKEEDDGKDRET 229
Score = 39.9 bits (93), Expect = 0.002
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK-KKRKKKRKKKKRKKKKRKKEEKKKK 358
RE+ +++ R + K R +K K+K KKK+ ++ K+R+ R+ K K ++ E+++K
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
Query: 359 KKKKKKKEKRKKR 371
++ K +
Sbjct: 220 EEDDGKDRETTTS 232
Score = 38.3 bits (89), Expect = 0.006
Identities = 14/72 (19%), Positives = 36/72 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R K K+ KKK +K++ +E+++++ R+ K K + +++K + + K ++
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRET 229
Query: 360 KKKKKKEKRKKR 371
+E ++
Sbjct: 230 TTSPMEEDESRQ 241
Score = 37.6 bits (87), Expect = 0.010
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K + ++ K K + K ++ K + K ++K++++ +++KKKKK+K KE+
Sbjct: 69 SKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEP 128
Query: 369 KKR 371
K R
Sbjct: 129 KDR 131
Score = 29.1 bits (65), Expect = 4.0
Identities = 9/71 (12%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ++K KKK+ + +K+++ ++ K K ++ +++K + + +E +
Sbjct: 177 KPPKKKPPNKKKEPP-EEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPME 235
Query: 361 KKKKKEKRKKR 371
+ + ++ +
Sbjct: 236 EDESRQSSEIS 246
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 56.3 bits (135), Expect = 2e-08
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K E ++ + + E E ++K + ++KK+ KKK K+K EEKKK
Sbjct: 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
Query: 359 KKKKKKKEKRKKR 371
+ KKK E+ KK+
Sbjct: 1394 DEAKKKAEEDKKK 1406
Score = 55.1 bits (132), Expect = 4e-08
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ ++ E K++ K+K + K+ + K + + ++K +K+K+E K
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Query: 356 KKKKKKKKKKEKRKK 370
KK KKK E++KK
Sbjct: 1378 KKADAAKKKAEEKKK 1392
Score = 54.8 bits (131), Expect = 5e-08
Identities = 18/72 (25%), Positives = 42/72 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K + ++K ++ +K + E E + + + K + +KK+++ K+K + KKK
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
Query: 360 KKKKKKEKRKKR 371
++KKK ++ KK+
Sbjct: 1388 EEKKKADEAKKK 1399
Score = 54.8 bits (131), Expect = 5e-08
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ ++ E K+ + KK+ + KK+ + KKK + KK + + + + + + E+
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Query: 356 KKKKKKKKKKEKRKK 370
K + +KKK+E +KK
Sbjct: 1365 KAEAAEKKKEEAKKK 1379
Score = 54.4 bits (130), Expect = 7e-08
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ E K++ ++ K+K K+K +E KK K + + +++ + +KKK+
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 360 KKKKKKEKRKKR 371
+ KKK + KK+
Sbjct: 1375 EAKKKADAAKKK 1386
Score = 54.0 bits (129), Expect = 7e-08
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K E ++ + K+K + K+K KKK + KK + K + + ++K
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Query: 359 KKKKKKKEKRKKR 371
+ +KKKE+ KK+
Sbjct: 1367 EAAEKKKEEAKKK 1379
Score = 54.0 bits (129), Expect = 8e-08
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK----KKKRKKKKRKKEEK 355
+ + +++ +K+KE+ KKK KKK ++K+K KKK ++ K+K +E
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
Query: 356 KKKKKKKKKKEKRKKR 371
KK KKK ++ KK+
Sbjct: 1411 KKAAAAKKKADEAKKK 1426
Score = 53.6 bits (128), Expect = 1e-07
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K E ++K +K+ + +K E K + + + + ++K + ++KKEE KKK
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 359 KKKKKKKEKRKKR 371
KKK + KK+
Sbjct: 1380 ADAAKKKAEEKKK 1392
Score = 51.3 bits (122), Expect = 5e-07
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KRKKEEK 355
++ E K++ ++ K+K K+ KKK KKK ++K+K + KKK +K +E
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
Query: 356 KKKKKKKKKKEKRKKR 371
KKK ++ KK E+ KK+
Sbjct: 1450 KKKAEEAKKAEEAKKK 1465
Score = 51.3 bits (122), Expect = 6e-07
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + + + K + ++K+++ KK+ +KK +KKK + K+K EE KKK
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 359 KKKKKKKEKRKKR 371
+ KK KK+
Sbjct: 1407 ADELKKAAAAKKK 1419
Score = 50.9 bits (121), Expect = 8e-07
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KRKKEEKK 356
++K + ++K ++K+K K+K +E KK KKK ++ +K ++ KKK +K +E K
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
Query: 357 KKKKKKKKKEKRKKR 371
KK ++ KK ++ KK+
Sbjct: 1477 KKAEEAKKADEAKKK 1491
Score = 50.5 bits (120), Expect = 9e-07
Identities = 17/73 (23%), Positives = 39/73 (53%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++ E K++ ++ K+ + KK+ E+ KKK KKK ++ +K + K + + + +
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Query: 359 KKKKKKKEKRKKR 371
++K + KK+
Sbjct: 1361 AAEEKAEAAEKKK 1373
Score = 50.5 bits (120), Expect = 1e-06
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK----KRKKEE 354
++K E K++ + K+K + K+K E KK KKK + +KK + KKK K+K EE
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Query: 355 KKKKKKKKKKKEKRKK 370
KK + KKK E+ KK
Sbjct: 1443 AKKADEAKKKAEEAKK 1458
Score = 50.5 bits (120), Expect = 1e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK----KKKRKKKKRKKEEKK 356
E+ ++ K + + + + E+K + +KKK + K+K KKK ++KK+ E KK
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Query: 357 KKKKKKKKKEKRKKR 371
K ++ KKK ++ KK
Sbjct: 1399 KAEEDKKKADELKKA 1413
Score = 50.1 bits (119), Expect = 1e-06
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + KKK + +K + K+K ++ KK + K+K + KKK + K+ E KKK +
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Query: 361 KKKKKEKRK 369
KK +E +K
Sbjct: 1515 AKKAEEAKK 1523
Score = 49.8 bits (118), Expect = 2e-06
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK---RKKEEK 355
++K E ++ + K+K + K+ ++ KKK + KKK + +K + KKK +K EE
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Query: 356 KKKKKKKKKKEKRK 369
KK + KK +E +K
Sbjct: 1522 KKADEAKKAEEAKK 1535
Score = 49.8 bits (118), Expect = 2e-06
Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 248 QMRREKALKRREAMERAK--REGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRER 305
+M+ E+A K EA +A+ ++ L+ A+ + + E + K
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ +K ++ +K+ + +K +E +KK + K++ + KK + KK++ EEKKK ++ KK +
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
Query: 366 EKRKKR 371
E+ K +
Sbjct: 1726 EENKIK 1731
Score = 49.8 bits (118), Expect = 2e-06
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K++ KKK + K+K + K+K ++ KK+ + +K KKK + K+K EEKKK +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 361 KKKKKEKRKK 370
KKK E+ KK
Sbjct: 1436 AKKKAEEAKK 1445
Score = 49.8 bits (118), Expect = 2e-06
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK----KRKKEEKKK 357
K+ +++K + +K + KK+ ++ KKK + KK + K+K ++ KKK K+K EE KK
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Query: 358 KKKKKKKKEKRKKR 371
+ K + +
Sbjct: 1344 AAEAAKAEAEAAAD 1357
Score = 49.8 bits (118), Expect = 2e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ KKK + +K ++ K+K ++ KK + K+K + KK + KK+ +E KKK +
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 361 KKKKKEKRKK 370
KK E +KK
Sbjct: 1502 AKKAAEAKKK 1511
Score = 49.4 bits (117), Expect = 2e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK---RKKKRKKKKRKKKKRKKEEK 355
++K E ++ + K+K + K+ E+ KKK + KK +KK + KK + K+K EE
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 356 KKKKKKKKKKEKRKKR 371
KKK + KK + KK+
Sbjct: 1496 KKKADEAKKAAEAKKK 1511
Score = 49.4 bits (117), Expect = 2e-06
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKK----KRKKKKRKKKRKKKKRKKKKRKKEEK 355
++K + ++K ++K+K K+K +E KKK K+ +KK + KK+ ++K+K +E
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
Query: 356 KKKKKKKKKKEKRKKR 371
KKK ++ KK ++ KK+
Sbjct: 1437 KKKAEEAKKADEAKKK 1452
Score = 49.4 bits (117), Expect = 2e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KRKKEEKK 356
++K + ++ K+K K+K +EKKK KKK ++ +K + KKK +K EE K
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
Query: 357 KKKKKKKKKEKRKKR 371
KK ++ KK ++ KK+
Sbjct: 1464 KKAEEAKKADEAKKK 1478
Score = 49.4 bits (117), Expect = 2e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK----KKKRKKKKRKKEEK 355
+K + ++K ++ +K + K+K +E KK KKK ++ +K KKK ++ K+K +E
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
Query: 356 KKKKKKKKKKEKRKK 370
KK + KKK ++ KK
Sbjct: 1503 KKAAEAKKKADEAKK 1517
Score = 49.4 bits (117), Expect = 3e-06
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ +++K + +K+ + +K E KKK + KK+ KKK + KK + K + +
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 362 KKKKEKRKKR 371
+ E +++
Sbjct: 1356 ADEAEAAEEK 1365
Score = 49.0 bits (116), Expect = 3e-06
Identities = 24/71 (33%), Positives = 47/71 (66%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ E +++ ++ +K + K+KE E+KKK + KK +++ K K + KK +E+KKK +
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Query: 360 KKKKKKEKRKK 370
+ KK +E++KK
Sbjct: 1748 EAKKDEEEKKK 1758
Score = 48.6 bits (115), Expect = 5e-06
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR--KKEEKKKK 358
+K E K++ + K+K + K+ ++ KKK + KKK +KK + KK K E +
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 359 KKKKKKKEKRKK 370
+ + E++ +
Sbjct: 1356 ADEAEAAEEKAE 1367
Score = 48.2 bits (114), Expect = 6e-06
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK++ KKK + +K + K+K ++ KK ++ K+K + KK + KK+ +E KK +
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
Query: 361 KKKKKEKRKK 370
KKK +E +KK
Sbjct: 1489 KKKAEEAKKK 1498
Score = 48.2 bits (114), Expect = 6e-06
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + +KK + K+K ++ K+ ++ KKK ++ K+K KKK ++ K+ E K + +
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Query: 361 KKKKKEKRKKR 371
+ + +
Sbjct: 1354 AAADEAEAAEE 1364
Score = 47.8 bits (113), Expect = 7e-06
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK----KKKRKKKKRKKEEK 355
++K + ++K ++ +K K+K +E KK + KKK ++ +K KKK ++ K+ E K
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 356 KKKKKKKKKKEKRKKR 371
KK ++ KKK ++ KK
Sbjct: 1490 KKAEEAKKKADEAKKA 1505
Score = 47.8 bits (113), Expect = 7e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK--RKKEEKK 356
++K E ++ + K+K + K+K E KK KKK + +K ++ KK +K EE K
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Query: 357 KKKKKKKKKEKRK 369
K + KK +EK+K
Sbjct: 1535 KADEAKKAEEKKK 1547
Score = 47.8 bits (113), Expect = 8e-06
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K++ KKK + K+K + K+K ++ KK + K+K + KK + KK+ +E KK +
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
Query: 361 KKKKKEKRK 369
KKK +E +K
Sbjct: 1476 KKKAEEAKK 1484
Score = 47.8 bits (113), Expect = 8e-06
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++ E+K+ + KK+ + KK E +KK ++ KKK K+K ++ KK + + +
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Query: 359 KKKKKKKEKRKKR 371
+ + + K
Sbjct: 1355 AADEAEAAEEKAE 1367
Score = 47.4 bits (112), Expect = 1e-05
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK----KKRKKKKRKKEEKKK 357
K+ + +K ++K+K K+K +E KK KKK ++ +KK KK+ ++ +K E K
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Query: 358 KKKKKKKKEKRKKR 371
+ + E
Sbjct: 1350 AEAEAAADEAEAAE 1363
Score = 47.4 bits (112), Expect = 1e-05
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK++ + +KK K+K +++K+ ++ KKK ++ K+K KK KK+ E KKK ++
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Query: 361 KKKKKEKRKK 370
KKK E +KK
Sbjct: 1430 KKKADEAKKK 1439
Score = 46.7 bits (110), Expect = 2e-05
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ ++K + KKK + K+K + K+K ++ +K + KKK ++ K+ ++ +KK E+
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 356 KKKKKKKKKKEKRKKR 371
KK + KKK + K+
Sbjct: 1469 AKKADEAKKKAEEAKK 1484
Score = 46.3 bits (109), Expect = 2e-05
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKK---RKKKKRKKKRKKKKRKKKKRKKEEKK 356
+K + ++K ++ +K K+K +E KKK +K + KKK + K+ ++ +K +E K
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 357 KKKKKKKKKEKRK 369
K ++ KK E +K
Sbjct: 1529 KAEEAKKADEAKK 1541
Score = 46.3 bits (109), Expect = 2e-05
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK----RKKEEK 355
+K+E ++K +K+ +K+K E KKK + KK+ + KK KKK +KK E+
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Query: 356 KKKKKKKKKKEKRKKR 371
KKK + KKK + K+
Sbjct: 1430 KKKADEAKKKAEEAKK 1445
Score = 46.3 bits (109), Expect = 2e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK----KKRKKKKRKKEEK 355
+K E ++K ++ +K K+K +E KK KKK ++ +KK KK + K+K +E
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
Query: 356 KKKKKKKKKKEKRK 369
KK ++ KK E +K
Sbjct: 1516 KKAEEAKKADEAKK 1529
Score = 45.9 bits (108), Expect = 3e-05
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ ++ E K+ + KK+ + KK+ ++ KK + KKK + K+ ++ +K + KK E+
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
Query: 356 KKKKKKKKKKEKRKK 370
KK + KK E++KK
Sbjct: 1533 AKKADEAKKAEEKKK 1547
Score = 45.9 bits (108), Expect = 3e-05
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--KRKKE 353
+ ++ E+K+ + KK+ + KK E +KK ++ KK + KK+ ++ +K K+K E
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Query: 354 EKKKKKKKKKKKEKRKKR 371
E KK + KKK E+ KK+
Sbjct: 1481 EAKKADEAKKKAEEAKKK 1498
Score = 45.5 bits (107), Expect = 4e-05
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--KRKKE 353
+ L + +K+ + KK+ ++KK E +KK ++ KK KK+ ++ +K + K+K E
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Query: 354 EKKKKKKKKKKKEKRKK 370
E KK + KKK E+ KK
Sbjct: 1468 EAKKADEAKKKAEEAKK 1484
Score = 45.1 bits (106), Expect = 5e-05
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ E K++ ++ K+K K+ + KKK KK + K+ + +K ++ KK ++ KK
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
Query: 360 KKKKKKEKRKK 370
++KKK ++ KK
Sbjct: 1543 EEKKKADELKK 1553
Score = 44.7 bits (105), Expect = 7e-05
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K + ++ + K+K K+ E+ KK + KK + KK + K+ ++K+K +E KK +
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Query: 360 KKKKKKEKRK 369
+ KK +EK+K
Sbjct: 1556 ELKKAEEKKK 1565
Score = 44.7 bits (105), Expect = 7e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K E ++K + +K K+K E KK + KK + K+ ++ +K + KK E+KKK
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
Query: 359 KKKKKKKEKRKK 370
+ KK E+ KK
Sbjct: 1548 ADELKKAEELKK 1559
Score = 44.4 bits (104), Expect = 9e-05
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K E ++ ++ ++K +KE E+ KK + KK++ + KKK + KK ++E K K +
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
Query: 360 KKKKKKEKRKKR 371
+ KK+ E+ KK+
Sbjct: 1734 EAKKEAEEDKKK 1745
Score = 44.4 bits (104), Expect = 9e-05
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K ++K + +K + K+ ++ KK ++ KK KK ++KK+ + +K EE KK ++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 361 KKKKKEKRK 369
KKK +E +K
Sbjct: 1563 KKKAEEAKK 1571
Score = 44.4 bits (104), Expect = 9e-05
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K E +K + K++ ++ K+ E+ KKK ++K+K + KK ++ K K EE KK+ +
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 361 KKKKKEKRKKR 371
+ KKK + K+
Sbjct: 1741 EDKKKAEEAKK 1751
Score = 44.4 bits (104), Expect = 1e-04
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--KRKKEEKKK 357
+ + ++K+ + KK +KK E +KK +++KK KK+ ++ +K K+K EE KK
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 358 KKKKKKKKEKRKK 370
++ KKK E+ KK
Sbjct: 1459 AEEAKKKAEEAKK 1471
Score = 43.6 bits (102), Expect = 2e-04
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K++ KK ++ K+ + +K +E KK KK +KK+ + +K ++ KK E+KKK +
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
Query: 361 KKKKKEKRK 369
+ KK E+ K
Sbjct: 1568 EAKKAEEDK 1576
Score = 42.8 bits (100), Expect = 3e-04
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK--KKRKKEEKKK 357
+K + ++K ++ +K+ + +K E KKK + KK ++ +K + KK + +K +E KK
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 358 KKKKKKKKEKRK 369
++KKK E +K
Sbjct: 1542 AEEKKKADELKK 1553
Score = 42.8 bits (100), Expect = 3e-04
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ + +KK + K+ + +K E KK + KK + K+ ++K+K + KK E+ KK ++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 362 KKKKEKRKK 370
KKK E+ KK
Sbjct: 1563 KKKAEEAKK 1571
Score = 42.1 bits (98), Expect = 5e-04
Identities = 22/69 (31%), Positives = 46/69 (66%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K E ++K+ +++K+ + +K +E+ K K ++ K++ + KKK ++ K+ +EEKKK
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
Query: 360 KKKKKKEKR 368
KK++EK+
Sbjct: 1761 HLKKEEEKK 1769
Score = 41.7 bits (97), Expect = 6e-04
Identities = 29/125 (23%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 246 SNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRER 305
+ ++++ + K+ E ++A+ + ++ + A ++ +V+ E + K E
Sbjct: 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE--EVMKLYEEEKKMKAEE 1611
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ ++ K K + K+ E+EKKK ++ KKK +++KK + KK ++ + K ++ KK +
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
Query: 366 EKRKK 370
E +KK
Sbjct: 1672 EDKKK 1676
Score = 40.1 bits (93), Expect = 0.002
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ KK ++ K+ + +K +EKKK KK + K+ ++K+K ++ KK E+ K
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
Query: 361 KKKKKEKRK 369
+K +E +K
Sbjct: 1580 LRKAEEAKK 1588
Score = 39.4 bits (91), Expect = 0.004
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + KK + K+ + +K E KK + KKK + K+ ++ +K +++KK E+ KK +
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 361 KKKKKEKRK 369
+ K RK
Sbjct: 1574 EDKNMALRK 1582
Score = 39.0 bits (90), Expect = 0.005
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKK---KKRKKKKRKKKRKKKKRKKKKRKK 352
E + + + K+ + K++ + K+ E+ KKK +K+K ++ KK ++ K K ++ KK
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 353 EEKKKKKKKK--KKKEKRKKR 371
E ++ KKK + KK E+ KK+
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKK 1758
Score = 38.6 bits (89), Expect = 0.006
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ + +K ++K+K + K+ E++K RK ++ KK + + + K +EEKK K ++
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Query: 362 KKKKEKRKKR 371
KK E+ K +
Sbjct: 1612 AKKAEEAKIK 1621
Score = 38.2 bits (88), Expect = 0.008
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ KK +++K+ + +K +E KK + KKK + K+ ++ + RK EE KK ++
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Query: 361 KK 362
+
Sbjct: 1592 AR 1593
Score = 37.4 bits (86), Expect = 0.012
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 252 EKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK 311
E K EA+++ E L+ A+ + + E + K E +++ +
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAE----ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ +K+ + +K++E+KKK KK ++K+ ++ RK+K+ EE+ ++ +K++ E KK
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
Score = 37.4 bits (86), Expect = 0.013
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ + +K ++ K+ ++R +E +K + + +R+ + ++ RK +E KK ++K
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 362 KKKKEKRK 369
KK E +K
Sbjct: 1290 KKADEAKK 1297
Score = 37.4 bits (86), Expect = 0.013
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + KK + K+ +K+K E KK + KK +KK+ ++ +K ++ K +K ++
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 361 KKKKKEKR 368
KK +E R
Sbjct: 1586 AKKAEEAR 1593
Score = 37.4 bits (86), Expect = 0.014
Identities = 18/72 (25%), Positives = 42/72 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K E ++ ++ K RK + K+ ++ + ++ + + +KK + ++ +K EE K K
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
Query: 360 KKKKKKEKRKKR 371
++ KK E+ KK+
Sbjct: 1623 EELKKAEEEKKK 1634
Score = 37.0 bits (85), Expect = 0.016
Identities = 19/68 (27%), Positives = 43/68 (63%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K+ ++ K+K + K+ E+EKKK KK+ +KK ++ +++K+ +EE ++ +K++
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
Query: 364 KKEKRKKR 371
+ +K +
Sbjct: 1794 MEVDKKIK 1801
Score = 37.0 bits (85), Expect = 0.018
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK---RKKEEKKK 357
E + RK ++ +K + + +E K ++ KK K ++ +K ++ K K +K EE+KK
Sbjct: 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
Query: 358 KKKKKKKKEKRKKR 371
K ++ KKKE +K+
Sbjct: 1634 KVEQLKKKEAEEKK 1647
Score = 36.7 bits (84), Expect = 0.023
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK-----KRKKE 353
+K E R ++ K + KK K +E KK + K K ++ +K ++ KKK K++ E
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
Query: 354 EKKKKKKKKKKKEKRKKR 371
EKKK ++ KK +E+ K +
Sbjct: 1645 EKKKAEELKKAEEENKIK 1662
Score = 36.7 bits (84), Expect = 0.024
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++ KK + K+K + K+ E+ KK +KKK ++ +K ++ K +K E+ KK +
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
Query: 361 KKKKKEKRK 369
+ + +E K
Sbjct: 1591 EARIEEVMK 1599
Score = 36.3 bits (83), Expect = 0.031
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++ KK + +K + K+ E+KKK + KK ++ +K +++KK + K+ ++ K
Sbjct: 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
Query: 361 KKKKKEKRKK 370
+K E+ KK
Sbjct: 1579 ALRKAEEAKK 1588
Score = 35.5 bits (81), Expect = 0.055
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ E K +K + K+ + E+ K +++K+ K + KK ++ K K EE KK +
Sbjct: 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
Query: 360 KKKKKKEKRKKR 371
++KKK E+ KK+
Sbjct: 1630 EEKKKVEQLKKK 1641
Score = 35.1 bits (80), Expect = 0.062
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+K ++ K + + KK E++KKK + KK ++K+K KK++ KK E+ +K+K+
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
Query: 365 KEKRKKR 371
+E+ +
Sbjct: 1782 EEELDEE 1788
Score = 34.7 bits (79), Expect = 0.079
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ ++ KKK +K ++ K+ E+KKK + KK ++ + RK ++ KK E+ + ++
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
Query: 361 KKKKKEKRKK 370
K E+ KK
Sbjct: 1597 VMKLYEEEKK 1606
Score = 34.7 bits (79), Expect = 0.080
Identities = 18/71 (25%), Positives = 41/71 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + +KK + K+ + +K +EKKK + KK + K ++ ++ +K EE + ++
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
Query: 361 KKKKKEKRKKR 371
K +E++K +
Sbjct: 1598 MKLYEEEKKMK 1608
Score = 34.7 bits (79), Expect = 0.095
Identities = 17/69 (24%), Positives = 42/69 (60%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ + RK + RK + ++ E+E+K ++ +K + KK + K+ ++ +K E+ KK ++
Sbjct: 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Query: 362 KKKKEKRKK 370
++ E+ +K
Sbjct: 1248 ERNNEEIRK 1256
Score = 34.3 bits (78), Expect = 0.11
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK++ KK ++ K+ +K+K +E KK + K +K ++ K+ ++ R +E K ++
Sbjct: 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
Query: 361 KKKKKEKRKKR 371
+KK K + K+
Sbjct: 1604 EKKMKAEEAKK 1614
Score = 34.3 bits (78), Expect = 0.12
Identities = 16/69 (23%), Positives = 36/69 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ +K ++ +K + +K +E++ + +K + + R++ K EE +K +
Sbjct: 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE 1282
Query: 361 KKKKKEKRK 369
KK +EK+K
Sbjct: 1283 LKKAEEKKK 1291
Score = 34.0 bits (77), Expect = 0.15
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK----KKRKKKKRKKEEKKK 357
++ + +K ++ R + K E+EKK K + KK ++ + K KK +++K+K E+ KK
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
Query: 358 KKKKKKKKEKRKKR 371
K+ ++KKK + K+
Sbjct: 1641 KEAEEKKKAEELKK 1654
Score = 34.0 bits (77), Expect = 0.16
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK----RKKEE 354
+++ E K+ ++ K+ + + +E K ++ R +++ K + +K +K EE
Sbjct: 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
Query: 355 KKKKKKKKKKKEKRK 369
KKK + KK +EK+K
Sbjct: 1289 KKKADEAKKAEEKKK 1303
Score = 32.4 bits (73), Expect = 0.42
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E E K ++ +K + K +E K ++ +KK + +K ++ ++ + RK EE +K +
Sbjct: 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED 1150
Query: 361 KKKKKEKRK 369
K+ + RK
Sbjct: 1151 AKRVEIARK 1159
Score = 31.6 bits (71), Expect = 0.83
Identities = 16/68 (23%), Positives = 42/68 (61%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++ E ++K ++ +K + +K+K KK++ KK + +K K+ +++ +++EK++
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
Query: 359 KKKKKKKE 366
+ KK K+
Sbjct: 1795 EVDKKIKD 1802
Score = 31.3 bits (70), Expect = 1.1
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ +++ + KKK + +K +EK KK KK++ KK + +K K+ ++E ++ +K
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDEEEK-KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
Query: 361 KKKKKEKRKK 370
++ + +K+ K
Sbjct: 1792 RRMEVDKKIK 1801
Score = 30.9 bits (69), Expect = 1.2
Identities = 14/68 (20%), Positives = 38/68 (55%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + +K + + + +K +E +KK + +K + +K + ++ ++ RK E+ K+ +
Sbjct: 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIA 1157
Query: 362 KKKKEKRK 369
+K ++ RK
Sbjct: 1158 RKAEDARK 1165
Score = 30.9 bits (69), Expect = 1.2
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKK-RKEKEKKKKKRKKKKRKKKRKKKKRK-KKKRKKEEKK 356
E R+ + KKK + RK ++ RK ++ +K + +K KR + RK + RK EE +
Sbjct: 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
Query: 357 KKKKKKKKKEKRK 369
K + KK + RK
Sbjct: 1171 KAEDAKKAEAARK 1183
Score = 30.9 bits (69), Expect = 1.4
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ + RK ++ +K+ RK +E +K + +K + ++ + ++ + +K E +K ++
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
Query: 363 KKKEKRKK 370
+K E KK
Sbjct: 1170 RKAEDAKK 1177
Score = 30.9 bits (69), Expect = 1.4
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 250 RREKALKRREAMERA---KREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
+ E+A K EA ++A ++ + K+ D V + + K E
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK-----KRKKKKRKKKKRKKEEKKKKKKK 361
R+ + K+ +K +E K ++ RK + +K K +++++ ++ RK E+ KK +
Sbjct: 1170 RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV 1229
Query: 362 KKKKEKRKK 370
KK +E +K
Sbjct: 1230 KKAEEAKKD 1238
Score = 30.5 bits (68), Expect = 2.0
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK---KEEK 355
R+ + K+ + KK + +K +E +K +++R ++ +K + + +R+ K E+
Sbjct: 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Query: 356 KKKKKKKKKKEKRKK 370
+K + KK E++KK
Sbjct: 1277 ARKADELKKAEEKKK 1291
Score = 29.3 bits (65), Expect = 4.7
Identities = 14/69 (20%), Positives = 41/69 (59%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K E R+ +++++ + +K ++ +K + +K ++ KK ++ K+ +++R EE +K ++
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
Query: 362 KKKKEKRKK 370
+ R++
Sbjct: 1261 RMAHFARRQ 1269
Score = 28.2 bits (62), Expect = 8.7
Identities = 14/69 (20%), Positives = 35/69 (50%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ R ++ + + +K + K ++ +K + KK+ + RK ++ +K E +K ++
Sbjct: 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144
Query: 362 KKKKEKRKK 370
+K E K+
Sbjct: 1145 ARKAEDAKR 1153
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 51.9 bits (125), Expect = 2e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
KR ++ K++ K K+K +EKK +KRKKKK++KK+ KK++KK ++
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 51.9 bits (125), Expect = 2e-07
Identities = 19/50 (38%), Positives = 38/50 (76%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K++ ++ ++ KEK K K+K++++K +++KKK+K+KK+ K+ KKK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 50.0 bits (120), Expect = 9e-07
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K + KR E+ K+K + KK+++++K +KRKKKK++K++ KK+KKK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 50.0 bits (120), Expect = 9e-07
Identities = 21/50 (42%), Positives = 37/50 (74%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE+ K+ + K+K K KKK+ +KK +K+++KKK+KKK KK++K+ ++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 49.6 bits (119), Expect = 1e-06
Identities = 20/50 (40%), Positives = 38/50 (76%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++E K+ ++ K+K K +KK++ KK +++K++KK+KKK KK+K+K +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 49.6 bits (119), Expect = 1e-06
Identities = 21/50 (42%), Positives = 38/50 (76%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+E+ ++ + K+K + KK++E++K +K++KKKKRKKK KK+K+K +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 49.2 bits (118), Expect = 2e-06
Identities = 21/50 (42%), Positives = 37/50 (74%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K++ ++ + K K + KKKR++KK +K++KKKKRKKK +K+++K +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ L E +R K+K K +KKR+EK+ +K+K+KKK++KK +K+KK+ +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 48.4 bits (116), Expect = 3e-06
Identities = 19/50 (38%), Positives = 37/50 (74%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+++ KR + K++ K KKK+ +KK +K+K+KKK++KK K++K++ +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.0 bits (107), Expect = 4e-05
Identities = 19/49 (38%), Positives = 37/49 (75%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K++ ++ ++ K+K K +KK++ KK +K+KKKKK+KKK K++K+
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKK 410
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 50.7 bits (122), Expect = 4e-07
Identities = 22/95 (23%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKR--KRKKRKEKEKKKKKRKKK 334
+L + L+D + + ++ RK K R+ ++ + +E+++++ ++K
Sbjct: 233 DLLPLLNLVLYLVDKLANLKL-----SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEK 287
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K +KK+++++ K K EE++K ++K++KK+ RK
Sbjct: 288 KEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 49.6 bits (119), Expect = 1e-06
Identities = 17/69 (24%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK-------KKKKK 362
+ ++ K R+E+E+K K +++R+++ ++KK +KKK ++E K +K ++
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 363 KKKEKRKKR 371
K+++K+ ++
Sbjct: 314 KERKKQARK 322
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 51.3 bits (123), Expect = 5e-07
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKE------KKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
REK ++ KK ++R+ K+ E +KK + K +K RK KK K +K
Sbjct: 739 REKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIA 798
Query: 354 EKKKKKKKKKKKEK 367
K K+ KKK
Sbjct: 799 AATKAKRAAKKKVA 812
Score = 49.7 bits (119), Expect = 1e-06
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKE------KEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ K+ +K K+R+ +K E EKK K + KK +K KK K +K
Sbjct: 741 KAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAA 800
Query: 354 EKKKKKKKKKKKE 366
K K+ KKK E
Sbjct: 801 TKAKRAAKKKVAE 813
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K R++ KK K+ K+R+ +K + R +K+ K K KK +K +K K +
Sbjct: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ 795
Query: 362 KKKKEKRKKR 371
K + KR
Sbjct: 796 KIAAATKAKR 805
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 50.6 bits (121), Expect = 5e-07
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 299 IREKRERKRRKKKKK-----RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KR 350
+E +R +K K K+ +K+K+ E+ K K+ + + K + ++K K K+
Sbjct: 91 QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Query: 351 KKEEKKKKK----KKKKKKEKRKKR 371
+ EE+ K K KKK E +KK
Sbjct: 151 QAEEEAKAKAAAEAKKKAAEAKKKA 175
Score = 47.9 bits (114), Expect = 4e-06
Identities = 13/71 (18%), Positives = 42/71 (59%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ E ++++ ++ ++K +++ +K K+ ++ K+ +K+K+ ++ + K+ + K
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 360 KKKKKKEKRKK 370
K + + EK+ K
Sbjct: 135 KAEAEAEKKAK 145
Score = 47.5 bits (113), Expect = 5e-06
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++++ + K K+ + K K E EKK K+ KK+ +++ K K + K+K E KKK
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175
Query: 360 KKKKKKEKRKKR 371
+ + K + K
Sbjct: 176 EAEAKAKAEAKA 187
Score = 47.5 bits (113), Expect = 5e-06
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ E+K +++ KK+ + K K + KKK + K+K + + K + + K K + ++ K K
Sbjct: 138 AEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Query: 361 KKKKKEKRKK 370
+ K K
Sbjct: 198 AEAAKAKAAA 207
Score = 46.8 bits (111), Expect = 8e-06
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK--K 360
++ K K + + ++K ++E +K+ ++ K K + KKK + KK+ + E K K K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Query: 361 KKKKKEKRKK 370
K K E+ K
Sbjct: 187 AKAKAEEAKA 196
Score = 46.4 bits (110), Expect = 1e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 300 REKRERKRRKK---KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++ E K + + +KK K + KK+ E+E K K + K+K KKK + + + K E K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Query: 357 KKKKKKKKKEK 367
K K ++ K K
Sbjct: 187 AKAKAEEAKAK 197
Score = 46.0 bits (109), Expect = 1e-05
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK--RKKKRKKKKRKKKKRKKEEKKKKKK 360
+ R++ +++ K K+ E+ K+ + K+K+ K ++ + K K + EKK K++
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Query: 361 KKKKKEKRKK 370
KK+ E+ K
Sbjct: 148 AKKQAEEEAK 157
Score = 44.8 bits (106), Expect = 4e-05
Identities = 17/73 (23%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK--- 357
K+E++R+KK +++ + +K++ E+ ++K +++ ++ K+ ++ ++ EEK+K
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Query: 358 KKKKKKKKEKRKK 370
+ K K+ E + K
Sbjct: 123 EAKAKQAAEAKAK 135
Score = 44.4 bits (105), Expect = 5e-05
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK- 360
E+ R+K+ ++R K K+ E+ K+ ++K+++ + K K+ + + K E + +KK
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Query: 361 ----KKKKKEKRKKR 371
KK+ +E+ K +
Sbjct: 145 KEEAKKQAEEEAKAK 159
Score = 44.4 bits (105), Expect = 5e-05
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK-KEEKKKK 358
+ + +KK K + K++ +E + K KKK + +KK + + K + + K K
Sbjct: 132 AKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKA 191
Query: 359 KKKKKKKEKRKK 370
++ K K E K
Sbjct: 192 EEAKAKAEAAKA 203
Score = 44.1 bits (104), Expect = 6e-05
Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E ++K E++ + +K+R ++ ++KE E++ K K+ ++ K+ +K+K+ +E
Sbjct: 64 KKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Query: 354 EKKK----KKKKKKKKEKRKKR 371
K K K K + + ++K +
Sbjct: 124 AKAKQAAEAKAKAEAEAEKKAK 145
Score = 42.9 bits (101), Expect = 2e-04
Identities = 16/79 (20%), Positives = 48/79 (60%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V+VD + ++ +++KK +K + +++K +++ ++ K++ ++ R+K+ ++
Sbjct: 41 VLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA 100
Query: 351 KKEEKKKKKKKKKKKEKRK 369
+K K+ ++ K+ +EK+K
Sbjct: 101 EKAAKQAEQAAKQAEEKQK 119
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK--KKKKE 366
+ K K + KK+ + KKK + + K + + + K K ++ K K E K K K E
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAE 214
Query: 367 KRKKR 371
Sbjct: 215 AEAAA 219
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/73 (20%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 300 REKRERKRRKKK-KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R ++++K KK ++R++K +++ E+ +K++ ++ ++K+ ++ +K ++ E+ K+
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ 113
Query: 359 KKKKKKKEKRKKR 371
++K+K+ + K
Sbjct: 114 AEEKQKQAEEAKA 126
Score = 41.7 bits (98), Expect = 4e-04
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + KKK +K+ + + K K + K K K + K K + K K + K +
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEA 215
Query: 360 KKKKKKEKRKKR 371
+ +R
Sbjct: 216 EAAAAAAAEAER 227
Score = 41.0 bits (96), Expect = 7e-04
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ++K + KKK + + K + E + K K + K + + K K + K E +
Sbjct: 162 AEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAA 221
Query: 361 KKKKKEK 367
+ + K
Sbjct: 222 AAEAERK 228
Score = 32.9 bits (75), Expect = 0.24
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K E + + K + K K + E+ K K + K K + K + + ++
Sbjct: 171 AKKKAEAEAKAKAEA---KAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAER 227
Query: 359 K 359
K
Sbjct: 228 K 228
Score = 32.1 bits (73), Expect = 0.41
Identities = 13/59 (22%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK--RKKEEKKKKKKKKKKKEKRKKR 371
R ++++K KK+++R+KK ++ + +K++ + R+KE +++ +K K+ +
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAA 111
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 47.7 bits (114), Expect = 6e-07
Identities = 20/60 (33%), Positives = 41/60 (68%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK K +K +EK+KKK++K+ KK+R + ++++ K+ +K+K+ +K +++K K+R
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 47.7 bits (114), Expect = 7e-07
Identities = 20/60 (33%), Positives = 45/60 (75%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V+ E+L +++++KR++ KKR+ + R+E+ K++ +++K+ RK + KK KR++K+++K
Sbjct: 71 VEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 47.3 bits (113), Expect = 1e-06
Identities = 21/63 (33%), Positives = 42/63 (66%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK + K R++++KKK+KR KKR+ + ++ + K+R ++EK+ +K ++KK ++R
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 369 KKR 371
+K
Sbjct: 125 QKE 127
Score = 45.3 bits (108), Expect = 4e-06
Identities = 22/59 (37%), Positives = 43/59 (72%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
EK + ++KKKKRKR KKR+ + +++R K++ +K+++ +K ++KK K+ +K+K+K
Sbjct: 72 EKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 45.0 bits (107), Expect = 5e-06
Identities = 23/66 (34%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRK--KKKRKKKRKKKKRKKK--KRKKEEKKKKKKKKKKK 365
KK K +++ +EKEKKKK+++ KK+R R +++R K+ +++K +K ++KK K++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 366 EKRKKR 371
+K K++
Sbjct: 125 QKEKEK 130
Score = 44.2 bits (105), Expect = 1e-05
Identities = 20/60 (33%), Positives = 40/60 (66%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K K+ + K K+KKRK KK++ + +R++ +++ +++K+ RK EKK K+++K+K
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 49.2 bits (118), Expect = 7e-07
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + + + ++ +++ +KR+ EKEK ++ +K K K RKK+K + +K + +
Sbjct: 105 EAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Query: 361 KKKKKEKRKK 370
+ + K
Sbjct: 165 SELTVGQAVK 174
Score = 45.3 bits (108), Expect = 1e-05
Identities = 12/68 (17%), Positives = 36/68 (52%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K + + ++ +++ KKR+ +K+K +++++ K + +K++K + +K E +
Sbjct: 105 EAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Query: 364 KKEKRKKR 371
+ +
Sbjct: 165 SELTVGQA 172
Score = 43.8 bits (104), Expect = 5e-05
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK+ +E + K + ++ +++ KKR+ K+K ++E K K K +KK++ R ++
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 41.5 bits (98), Expect = 3e-04
Identities = 11/62 (17%), Positives = 37/62 (59%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
RK+ ++ K K + ++ +++ KK+ +++K +++++ K K ++++K + +K + +
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Query: 368 RK 369
Sbjct: 160 PV 161
Score = 41.1 bits (97), Expect = 4e-04
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R ++ KK+ K++ + ++K K K ++K+K + +K + + + + +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAV 173
Query: 365 KEK 367
K K
Sbjct: 174 KVK 176
Score = 39.9 bits (94), Expect = 9e-04
Identities = 13/70 (18%), Positives = 36/70 (51%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K + +R +++ K++ ++++ ++++K K K +KKRK + +K + + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Query: 360 KKKKKKEKRK 369
+ K K
Sbjct: 167 LTVGQAVKVK 176
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 48.5 bits (116), Expect = 7e-07
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKR 350
I D E +K++K+ + K KK E+++K K +KKK +KKK K K K+ KK
Sbjct: 52 IYDAE----YTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
K EKK +K+ + K E K
Sbjct: 108 DKSEKKDEKEAEDKLEDLTK 127
Score = 47.4 bits (113), Expect = 2e-06
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+K+K E EK KK+ ++K++ K +KKK +KKK + K++K KK K +K+ K+
Sbjct: 61 KKKKKELAE-EIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 45.8 bits (109), Expect = 6e-06
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K+E + ++K K +K+K KK+K+K+K KK KK + +K+ +K+ + K + +
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Query: 360 KKKKKKEKRKK 370
+ K +K
Sbjct: 133 LSTLSELKPRK 143
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++++ E K++ K KK+K K+KK K+K+KK K+ K KK K+ + K + K +
Sbjct: 74 VKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Query: 359 KKKKKKKEKR 368
+ K ++
Sbjct: 134 STLSELKPRK 143
Score = 38.5 bits (90), Expect = 0.002
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ E KKKK++ + +K KK+ +K+K K ++KK KKKK K K+K+ +
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 47.7 bits (114), Expect = 7e-07
Identities = 28/65 (43%), Positives = 48/65 (73%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L+ EK +++ ++ ++KR+ KKRK++EK KKR K+++KK++KKKK+K KK K+E+K+
Sbjct: 54 LMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKE 113
Query: 358 KKKKK 362
K
Sbjct: 114 GSKSS 118
Score = 45.4 bits (108), Expect = 4e-06
Identities = 25/71 (35%), Positives = 50/71 (70%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE+++RK +K K++ KR+K+K+K+KKKKK KK +K++++ K ++ +EE+ ++
Sbjct: 72 REEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEED 131
Query: 360 KKKKKKEKRKK 370
K+++ E +K
Sbjct: 132 KQEEPVEIMEK 142
Score = 42.3 bits (100), Expect = 5e-05
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R R+++ +R ++ +KE + ++ ++K+ +KKRK +++ KKR K +KKK+KKKKKK
Sbjct: 42 RALRRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Query: 365 KEKRKKR 371
K K+ +
Sbjct: 102 KAKKGNK 108
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/72 (31%), Positives = 48/72 (66%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + ER +K +K + ++++++KKRK +++ K++ K++KKK++KK++KK KK
Sbjct: 46 RREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK 105
Query: 360 KKKKKKEKRKKR 371
KK++++ K
Sbjct: 106 GNKKEEKEGSKS 117
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 47.8 bits (114), Expect = 2e-06
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK ++ + KKK++ K K KE KKKKK+ K + R KKK ++
Sbjct: 75 EKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLL 134
Query: 361 KKK-KKEKRK 369
+K R
Sbjct: 135 DSPRRKSSRS 144
Score = 47.0 bits (112), Expect = 5e-06
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K +R+E+ KKKK+ K K K+ KKKK+K K K + KKK E+
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWA 130
Score = 46.2 bits (110), Expect = 8e-06
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 29/105 (27%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK-------- 347
E+ E+ ++K+R K K K KK+K+K+ K K + +KK +R
Sbjct: 77 ELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDS 136
Query: 348 ---------------------KKRKKEEKKKKKKKKKKKEKRKKR 371
K+R+ KK + K +K+KEK+K++
Sbjct: 137 PRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ E++ +++++ +K+KR K K ++ KK+KKK + K + +KK E+
Sbjct: 72 EEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Query: 361 KKKKKEKRK 369
+RK
Sbjct: 132 TLLDSPRRK 140
Score = 43.1 bits (102), Expect = 8e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EKE ++++R KKK++ K K K KK+KK++ K K + KK+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKK 123
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ + +++ K+KK+ + K K+ +KKKK+ K K + +K+ +R
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 40.1 bits (94), Expect = 8e-04
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+ ++ +R +KK++ K K K+ KKK+KK K K + +KK ++
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLD 135
Query: 369 KKR 371
R
Sbjct: 136 SPR 138
Score = 40.1 bits (94), Expect = 9e-04
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +++++ K+K++ + + K+ K+KKKK K K + KK+ ++
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLD 135
Query: 366 EKRKK 370
R+K
Sbjct: 136 SPRRK 140
Score = 39.3 bits (92), Expect = 0.002
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK--RKKKKRKKKKRK 351
D K R KKK +R + ++K R + K+ ++ K ++ +RK
Sbjct: 106 DPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRK 165
Query: 352 KEEKKKKKKKKKKKEKR 368
K + K +K+K+KKKEK
Sbjct: 166 KIQAKARKRKEKKKEKE 182
Score = 35.0 bits (81), Expect = 0.035
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRK-----KKKRKKEEKKKKKKKKKKKEKRKKR 371
E+E +K+ +++++ KKK++ K + KKK+KK+ K K +KK
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Score = 28.1 bits (63), Expect = 6.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 25/70 (35%)
Query: 300 REKRERKRRKKKKKRKRKRKKR-------------------------KEKEKKKKKRKKK 334
RE R +K + K +KRK K+K++ +E+E++KKK K +
Sbjct: 160 REIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQ 219
Query: 335 KRKKKRKKKK 344
KK+R +
Sbjct: 220 ALKKRRLYEG 229
Score = 27.7 bits (62), Expect = 7.7
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 27/97 (27%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKR-KEKEKKKKKRKKKKRKKKRKKKKR----------- 345
L+ R + R + K +R KE+E ++KK + K RK+K KKK++
Sbjct: 133 LLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEA 192
Query: 346 ---------------KKKKRKKEEKKKKKKKKKKKEK 367
++++ KK+ K + KK++ E
Sbjct: 193 KETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEG 229
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 46.9 bits (112), Expect = 4e-06
Identities = 29/64 (45%), Positives = 47/64 (73%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK +K K+K+K+K+K KK ++ K+K ++KK +R+KKR++ +K+K KK +KKKK K
Sbjct: 141 EKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Query: 361 KKKK 364
KK +
Sbjct: 201 KKGR 204
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/59 (47%), Positives = 45/59 (76%), Gaps = 3/59 (5%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE---EKKKKKKKKKKKEKRKKR 371
+K KRKEK+KKK K++ K+RK+K +KKK +++K+++E ++K KK KKKK+ +KK
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKG 203
Score = 37.3 bits (87), Expect = 0.006
Identities = 21/54 (38%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKK----KRKKKKRKKKRKKKKRKKKK 349
+EK+++K +K+ K+RK K +K+K + +KK+ K++K +K K+KKK +KK +
Sbjct: 151 KEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 35.0 bits (81), Expect = 0.034
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+R+RK+ + K +KK+KRK+ K+K+ +K + ++ K ++ + KKK + E
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEG 62
Score = 35.0 bits (81), Expect = 0.039
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 17/84 (20%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE--------- 354
E++RRK+++++ RK++KRKE +KK+ +K + + K ++ K KKK E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 355 --------KKKKKKKKKKKEKRKK 370
KK K KKKK+K+K
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKT 92
Score = 33.8 bits (78), Expect = 0.095
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K E +++K ++ + K + +EKEK K K + K + +K KK K++EK+KKK
Sbjct: 99 KKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKS 158
Query: 361 KKKKKEKRKK 370
KK+ KE+++K
Sbjct: 159 KKEWKERKEK 168
Score = 31.5 bits (72), Expect = 0.46
Identities = 13/48 (27%), Positives = 34/48 (70%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++++K+ ++K RKK+++K+ +KK+ +K E ++ K ++ K +K+
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAP 56
Score = 30.0 bits (68), Expect = 1.4
Identities = 14/53 (26%), Positives = 37/53 (69%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+E ++++RK+++RK ++K+K+++ KK++ +K + ++ K ++ K KK+
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
Score = 29.2 bits (66), Expect = 2.9
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 32/103 (31%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEK--------------------------------EKK 327
+++ RK++K+K+ +K++ ++ E + +
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEFADGE 75
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K+ K +KKK+KKK K+ KK E +KKK ++ ++K +
Sbjct: 76 QAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAE 118
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 47.5 bits (114), Expect = 7e-06
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ++ ++KK K K+K+ KRK K+ + K R+++R +++R+KKK+K++ +K
Sbjct: 114 PKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIP 173
Query: 360 KK 361
++
Sbjct: 174 RE 175
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 44.5 bits (106), Expect = 9e-06
Identities = 20/76 (26%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKK-----RKKKKRKKKRKKKKRKKKKRKKE 353
++ +++++ K+ +R+ K +K K + + +R K+ KKK+ K+KK +++
Sbjct: 55 VKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEK 114
Query: 354 EKKKKKKKKKKKEKRK 369
E+K++ K++KKK K +
Sbjct: 115 ERKRQLKQQKKKAKHR 130
Score = 33.8 bits (78), Expect = 0.039
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 301 EKRERKRRKKKKKRKR-KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ +++KK KR +R+ KE +K K ++ K ++ +++KK++ +EKK+++
Sbjct: 54 AVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEE 113
Query: 360 KKKK---KKEKRKKR 371
K++K K++K+K +
Sbjct: 114 KERKRQLKQQKKKAK 128
Score = 33.4 bits (77), Expect = 0.055
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 289 IDVIVDTEILIREKR-ERKRRKKKKKRK---------RKRKKRKEKEKKKKKRKKKKRKK 338
+ V + + I KR +R+ K+ KK + +R ++EKKK+ ++KK+ +K
Sbjct: 55 VKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEK 114
Query: 339 KRKKKKRKKKKRKK 352
+RK++ +++KK+ K
Sbjct: 115 ERKRQLKQQKKKAK 128
Score = 30.7 bits (70), Expect = 0.54
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK------KEEKKKKKKKKKKKEKRK 369
+ + K KK+KK K+ +++ K+ +K K E ++ K++KKK+ K K
Sbjct: 50 KFTEAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEK 109
Query: 370 KR 371
K
Sbjct: 110 KE 111
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 47.0 bits (112), Expect = 9e-06
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 263 RAKREGSIVSFHHVNLRDAFAKSM----DLIDVIVDTEILIREKRERKRRKKKKKRKRKR 318
RA RE +I+ H + KSM + I + +++ KRK K
Sbjct: 256 RANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKS 315
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K ++ EK + K+KK++KK+++KK+K+ +R +E +K + + KE+ K
Sbjct: 316 KFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 33.1 bits (76), Expect = 0.23
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K K + + K+ KK + ++K K K E +K + K++K++K+
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Score = 32.3 bits (74), Expect = 0.41
Identities = 19/70 (27%), Positives = 41/70 (58%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K + L ++I D + ++ K ER K + K K+K++K++EKKKK+ ++ + + ++ +
Sbjct: 298 KMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357
Query: 344 KRKKKKRKKE 353
+ K+ K
Sbjct: 358 QATDKEENKT 367
Score = 31.6 bits (72), Expect = 0.69
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)
Query: 322 KEKEKKKKKRKKKKR-------------KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K +EK K + + KR K++ K K ++ K + + K+KKK+KKKE++
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 369 KKR 371
KK+
Sbjct: 341 KKK 343
Score = 29.2 bits (66), Expect = 3.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K +EK K K + K+ +K + KRK + K ++ +K E ++K
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEK 331
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R + K+K K K +K + + + + K ++K KK+K E+ K++KKKKK+
Sbjct: 102 RLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Query: 365 KEKRKKR 371
K+K+KKR
Sbjct: 162 KKKKKKR 168
Score = 44.8 bits (106), Expect = 2e-05
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE-EKKKKKKKKKKKEKRK 369
KKK K K KK + ++ ++ K +KK KKKK + + E+KKKKK+KKKK+KR
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 38.7 bits (90), Expect = 0.002
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 18/65 (27%)
Query: 309 KKKKKRKRKRKKRKE------------------KEKKKKKRKKKKRKKKRKKKKRKKKKR 350
KKK K K K+ + ++ K KKKK K+RKKK+K+KK+KKK+
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 351 KKEEK 355
E
Sbjct: 170 SPEHP 174
Score = 37.1 bits (86), Expect = 0.005
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
E+K +KKK + ++RKK+K+++KKKKKR
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 35.6 bits (82), Expect = 0.016
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+K KKK+ K+RK+K+K+KKK+KK+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Score = 35.6 bits (82), Expect = 0.021
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
K K+ KKKK K +K+K+KEKKKKK++
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 34.4 bits (79), Expect = 0.044
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R + KKK K K KK + + + + + +KK KKKK E K+R
Sbjct: 100 QYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKER 155
Score = 32.9 bits (75), Expect = 0.13
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
++ KKKK + ++++K+K++KKKK+K+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 32.1 bits (73), Expect = 0.28
Identities = 13/38 (34%), Positives = 28/38 (73%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKR 331
D+E L +++ K++K + ++RK+KK+++K+KKK+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Score = 27.9 bits (62), Expect = 6.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKK 327
++ + K RKKKKK K+K+KKR E
Sbjct: 147 KKHEDDKERKKKKKEKKKKKKRHSPEHP 174
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 46.8 bits (112), Expect = 1e-05
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +E+E + +RKK RKK+++ +KK +KEE +K KKK + KK
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 46.1 bits (110), Expect = 2e-05
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
RKK +K++RK +K+ EKE+ +K KKK + KK K + KK
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 45.3 bits (108), Expect = 4e-05
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++KK +KK+RK ++K +K + +K ++K + KK K + +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 44.9 bits (107), Expect = 4e-05
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
ERK+ +KK+++ K+ +++E EK K+K + KK K + KK
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 44.9 bits (107), Expect = 5e-05
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++K ++K+RK ++K +K+ +K KK+ + KK K E KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 43.8 bits (104), Expect = 1e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E+KK ++K++K +KK +K++ +K KK+ + KK K + KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+RK+ RKK+++ EKK +K + +K K+K + KK + + + KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 42.6 bits (101), Expect = 2e-04
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+RKK ++K++K +K+ +K+ +K KK+ + KK + + KK
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 42.2 bits (100), Expect = 4e-04
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
E++K +KK++K ++K ++++ ++ K+K E KK K + K+
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++K +KK+++ +KK +K+ +K KKK + KK K + K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+RK+ KK++K +K+ +K + +K KK+ + KK K + +K
Sbjct: 409 AERKKLRKKQRK--AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 38.8 bits (91), Expect = 0.004
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++K ++K++K KK ++++ K +KK + ++ K + KK
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 36.4 bits (85), Expect = 0.020
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
R+K +K+RK +KK +++ ++ +KK + KK + + KK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 34.5 bits (80), Expect = 0.087
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
++ K+ +K++ K KK+ E KK K + KK
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 32.6 bits (75), Expect = 0.35
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+R+K+ + +K +K+ K +K+ E KK K + K+
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 46.6 bits (111), Expect = 1e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + KK K++ K + K+K +KKKK+KK+K++ K + + + K K+ KK KKK
Sbjct: 46 ENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Query: 361 KKKKKEKRKKR 371
K K
Sbjct: 106 PPKPKPNEDVD 116
Score = 45.1 bits (107), Expect = 4e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ I I +++ ++ +++ K K+ +KE K + KKK KKK+KKK
Sbjct: 19 SKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKK 78
Query: 344 KRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++K+ K + E K K KK K+ +KK
Sbjct: 79 EKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 44.7 bits (106), Expect = 4e-05
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
EIL E + +K K++ + + KKK ++KKKK+K+K++ K + K +
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Query: 355 KKKKKKKKKKKEKRKKR 371
KK KK KKK K K
Sbjct: 96 PKKSKKTKKKPPKPKPN 112
Score = 40.1 bits (94), Expect = 0.001
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+K+ +KKKK+K+++K+ K + + K K K+ KK KKK K K + + K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIA 123
Query: 362 KKKKEKRKK 370
+ ++
Sbjct: 124 ELAEKSNVY 132
Score = 37.4 bits (87), Expect = 0.011
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++ +I+ +K + + K +++ K K+ KK+ K
Sbjct: 4 ILCMILSFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKN 63
Query: 348 KKRKKEEKKKKKKKKKKKEKRKK 370
+ KK+ +KKKKKKK+KKE + +
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSE 86
Score = 37.0 bits (86), Expect = 0.015
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K+ K++KKKK++K + + + K K +K KK KKK K K + K +
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELA 126
Query: 361 KKKKK 365
+K
Sbjct: 127 EKSNV 131
Score = 35.5 bits (82), Expect = 0.043
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKK-KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK--- 361
K+ K + K+K +K+K+K+K+KK + + + K K K+ KK +KK K K +
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Query: 362 --KKKKEKRKK 370
K E +K
Sbjct: 118 AFNKIAELAEK 128
Score = 34.7 bits (80), Expect = 0.075
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++++K+ KK+K++ K + + K K+ KK +KK K K + + + +
Sbjct: 70 SEKKKKK--KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Query: 361 KKKKK 365
K
Sbjct: 128 KSNVY 132
Score = 29.3 bits (66), Expect = 3.1
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K+++K +K+ K + K +K KK +KK + K + K + +K
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
Query: 360 K 360
Sbjct: 132 Y 132
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 45.1 bits (107), Expect = 1e-05
Identities = 17/64 (26%), Positives = 52/64 (81%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK+ K + K+ +R+++E ++++R+++K+ +++++ +RK+++ +EE++KKK+++++KE+
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 368 RKKR 371
++
Sbjct: 65 EEQA 68
Score = 43.5 bits (103), Expect = 5e-05
Identities = 15/66 (22%), Positives = 50/66 (75%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++ K + K+ R++++E E+++++ +KK +K+ ++K +++ ++ EKKK+++++K++
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 366 EKRKKR 371
E++ ++
Sbjct: 65 EEQARK 70
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/67 (23%), Positives = 50/67 (74%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+KR + K+ ++++R+ ++ + +E+KK + K++ +K+ ++ + +++K+K+EE++K++
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 360 KKKKKKE 366
+++ +KE
Sbjct: 65 EEQARKE 71
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/69 (21%), Positives = 55/69 (79%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ +++ ++++R+ + ++R+E++K ++KR+ ++++++ +++R+KKK ++E K+++++
Sbjct: 9 AKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68
Query: 362 KKKKEKRKK 370
+K++E+ +K
Sbjct: 69 RKEQEEYEK 77
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/64 (20%), Positives = 48/64 (75%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R++RE + ++++++K + K+ E++++++ +++++KK+ +++K ++++ +KE+++ +K
Sbjct: 18 RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Query: 360 KKKK 363
K
Sbjct: 78 LKSS 81
Score = 37.0 bits (86), Expect = 0.007
Identities = 21/67 (31%), Positives = 47/67 (70%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE E +R ++KK +++ +RKE+E+ +++R+KKK +++RK+++ + +K ++E +K K
Sbjct: 21 REAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKS 80
Query: 360 KKKKKKE 366
++E
Sbjct: 81 SFVVEEE 87
Score = 35.1 bits (81), Expect = 0.031
Identities = 14/69 (20%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK---RKKKKRKKEEKKK 357
EK+ R+++++ ++ +R+ +K+ E++++ +++++++ +++R+KKK +K++ ++ K++
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Query: 358 KKKKKKKKE 366
++ +K K
Sbjct: 73 EEYEKLKSS 81
Score = 35.1 bits (81), Expect = 0.031
Identities = 19/64 (29%), Positives = 48/64 (75%), Gaps = 6/64 (9%)
Query: 314 RKRKRKKRKEKEKKKKKRKKK------KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K KKR + E+K+ +R+++ + ++K+ ++KR+ +++++EE +++++KKK++E+
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 368 RKKR 371
RK+R
Sbjct: 61 RKER 64
Score = 32.4 bits (74), Expect = 0.24
Identities = 10/57 (17%), Positives = 42/57 (73%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E+RE +++ ++K+ ++++ + +E+++KK+++++RK++ ++ ++++++ +K
Sbjct: 22 EAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 45.6 bits (108), Expect = 2e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ K + +K K+K K KK K K K+ KK KK KK K KK
Sbjct: 212 AKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAA 271
Query: 366 EKRKK 370
+K K
Sbjct: 272 KKAAK 276
Score = 43.7 bits (103), Expect = 9e-05
Identities = 21/69 (30%), Positives = 28/69 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ +KK K KK + K K+ KK KK KK + KK K+ K K
Sbjct: 222 AAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Query: 362 KKKKEKRKK 370
K K K
Sbjct: 282 AKGAAKATK 290
Score = 43.3 bits (102), Expect = 1e-04
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ +K K + +K + + KK KKK K K+ K K KK K
Sbjct: 194 VGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAK 253
Query: 359 KKKKKKKEKRKK 370
K KK +K K
Sbjct: 254 KTAKKALKKAAK 265
Score = 41.4 bits (97), Expect = 5e-04
Identities = 25/69 (36%), Positives = 29/69 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K K KK KK +K K+ K KK +K K K K K K K + KKK KK
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKK 302
Query: 362 KKKKEKRKK 370
K K
Sbjct: 303 AAAGSKAKA 311
Score = 41.4 bits (97), Expect = 5e-04
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ K KK + K +K KK K+ KK K KK +K K + K K
Sbjct: 229 KKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKA 288
Query: 362 KKKKEKRKKR 371
K K K KK+
Sbjct: 289 TKGKAKAKKK 298
Score = 41.4 bits (97), Expect = 5e-04
Identities = 23/71 (32%), Positives = 29/71 (40%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ K K K+ K K KK K+K K KK + K K+ KK KK
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Query: 361 KKKKKEKRKKR 371
KK K K+
Sbjct: 259 ALKKAAKAVKK 269
Score = 40.6 bits (95), Expect = 9e-04
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + +K KK+ K +K K + KK KK KK +K K K+ KK K
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKA 277
Query: 362 KKKKEKRKKR 371
K K +
Sbjct: 278 AAKAAKGAAK 287
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+ K K KK K K K+ KK+ K +K K + KK KK K
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Query: 364 KKEKRKKR 371
K K+ +
Sbjct: 258 KALKKAAK 265
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K K K+ KK+ K K+ K K KK K+ KK K+ K KK KK
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
Query: 365 KEK 367
K
Sbjct: 274 AAK 276
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/69 (30%), Positives = 29/69 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ + K +K +KK + KK K K +K KK KK KK K KK
Sbjct: 212 AKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAA 271
Query: 362 KKKKEKRKK 370
KK + K
Sbjct: 272 KKAAKAAAK 280
Score = 40.3 bits (94), Expect = 0.001
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ + + KK K+K K KK K K KK +K K+ KK K KK K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAK 272
Query: 360 KKKKKKEKRKK 370
K K K K
Sbjct: 273 KAAKAAAKAAK 283
Score = 39.9 bits (93), Expect = 0.002
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + KK + + K+ KKK + KK K + KK KK KK KK
Sbjct: 204 KTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKA 263
Query: 362 KKKKEKRKKR 371
K +K K+
Sbjct: 264 AKAVKKAAKK 273
Score = 39.5 bits (92), Expect = 0.002
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K KK K K +K +KK K +K + K KK +K +K KK
Sbjct: 203 AKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKK 262
Query: 360 KKKKKKEKRKK 370
K K+ KK
Sbjct: 263 AAKAVKKAAKK 273
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ K K KK + K KK KKK K K+ K K KK +K
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Query: 368 RKKR 371
K+
Sbjct: 255 TAKK 258
Score = 39.5 bits (92), Expect = 0.002
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K + KK K K K+ +K KK KK K +K K+ K K K K
Sbjct: 228 KKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Query: 360 KKKKKKEKRKK 370
K K + +KK
Sbjct: 288 ATKGKAKAKKK 298
Score = 39.5 bits (92), Expect = 0.002
Identities = 23/66 (34%), Positives = 29/66 (43%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+K K K +K KK +K KK + KK KK K K K + K K K KKK
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Query: 365 KEKRKK 370
K+
Sbjct: 299 AGKKAA 304
Score = 39.1 bits (91), Expect = 0.002
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + K KK +K+ K +K K K +K K+ KK KK K +K KK
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
Query: 360 KKKKKKEKRKK 370
K + K
Sbjct: 274 AAKAAAKAAKG 284
Score = 38.7 bits (90), Expect = 0.003
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K +K K + KK K+ KK K+ K KK KK + K K K K K
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK 292
Query: 362 KKKKEKRKK 370
K K+K K
Sbjct: 293 AKAKKKAGK 301
Score = 37.6 bits (87), Expect = 0.007
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + K KK K+ KK +K K K+ KK K K + K K + K KKK
Sbjct: 240 KAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKA 299
Query: 362 KKKKEKRKKR 371
KK K
Sbjct: 300 GKKAAAGSKA 309
Score = 37.6 bits (87), Expect = 0.008
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++ KK K K K K K + K K+K +K K K + K+ K KK K+
Sbjct: 268 KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKK 327
Query: 367 KRKKR 371
KKR
Sbjct: 328 VTKKR 332
Score = 37.2 bits (86), Expect = 0.011
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K +K +K KK +K K +K KK + K K K + K K KK+ KK
Sbjct: 247 KAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAG 306
Query: 362 KKKKEKRK 369
K K K
Sbjct: 307 SKAKATAK 314
Score = 36.0 bits (83), Expect = 0.023
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ KK K+ K K+ KK K K K K K K K +KK KK K K
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKA 311
Query: 366 EKRKKR 371
+ +
Sbjct: 312 TAKAPK 317
Score = 35.2 bits (81), Expect = 0.038
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ K K K+ +K K+ K+ K +K K+ K K K + + K K KKK
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Query: 362 KKKKEKRK 369
KK
Sbjct: 299 AGKKAAAG 306
Score = 34.1 bits (78), Expect = 0.093
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ K+ KK K+ K+ + K+ KK K + K K K K + K++ KK
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Query: 361 KKKKKEKRKK 370
K + K
Sbjct: 305 AGSKAKATAK 314
Score = 33.3 bits (76), Expect = 0.17
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ K+ KK + K+ +K + K K + K K K +KK +K K K
Sbjct: 253 KKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKAT 312
Query: 362 KKKKEKRKK 370
K ++ K
Sbjct: 313 AKAPKRGAK 321
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 45.9 bits (109), Expect = 2e-05
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 9/75 (12%)
Query: 305 RKRRKKKKKRKRKR-KKRKEKEKKKKKRKKKKRKKK--------RKKKKRKKKKRKKEEK 355
R K+K K +R + K+RKE E++ K+ K+ K+K K+ +K+K R ++++
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKE 331
Query: 356 KKKKKKKKKKEKRKK 370
++K++ +KKK KR+K
Sbjct: 332 QRKERGEKKKLKRRK 346
Score = 43.2 bits (102), Expect = 1e-04
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 11/75 (14%)
Query: 300 REKRERK-RRKKKKKRKRKRKKRKEKEKKKKKRK----------KKKRKKKRKKKKRKKK 348
+ +RK + ++ K+++RK +R+ KE+K+ K+K K+ +K K + RKK+
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKE 331
Query: 349 KRKKEEKKKKKKKKK 363
+RK+ +KKK K++K
Sbjct: 332 QRKERGEKKKLKRRK 346
Score = 41.6 bits (98), Expect = 4e-04
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 252 EKALKRREAMERAKRE-GSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKK 310
KA K+R+ +ER + + ++ L + ++ D + E E +
Sbjct: 207 VKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEY 266
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR---------KKEEKKKKKKK 361
+ K R KRK K ++ K++++K+ +++ K++K+ KKK KE +K+K +
Sbjct: 267 EPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKAR 326
Query: 362 KKKKEKRKKR 371
+KKE+RK+R
Sbjct: 327 ARKKEQRKER 336
Score = 36.2 bits (84), Expect = 0.020
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 300 REKRERKRRKKKKKRKRKRKK---------------RKEKEKKKKKRKKKKRKKKRKKKK 344
+EKR ++ ++ K+ K+ +KK +KEK + +KK ++K+R +K+K K+
Sbjct: 285 KEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKR 344
Query: 345 RKKKKRKKEEK 355
RK K K E
Sbjct: 345 RKLGKHKYPEP 355
Score = 33.1 bits (76), Expect = 0.24
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKE------------KKKKKRKKKKRKKKRK 341
D ++ + + + KKK+RK+ +K K E KK+ KKK +KKK K
Sbjct: 39 DEDLFVVDTTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSK 98
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ RK+ R K+ + KK K K K
Sbjct: 99 QVSRKELLRLKKLARGKKGGKAKLLNASK 127
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++R +KK KK+K K+ RKE + KK + KK K + K
Sbjct: 84 KKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
++ + E K +R + K K K + RK + +K++KKKK+ + KK K+
Sbjct: 1141 LEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Query: 349 KRKKEEKKKKKKKKKKKEKR 368
E++K K KK
Sbjct: 1201 VDSDEKRKLDDKPDNKKSNS 1220
Score = 42.3 bits (100), Expect = 4e-04
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E++E K+ K +R + K K K K RK K +KK++KKKK K KK K
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKL--RKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199
Query: 361 KKKKKEKRKKR 371
+ EKRK
Sbjct: 1200 RVDSDEKRKLD 1210
Score = 42.3 bits (100), Expect = 4e-04
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKR-RKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
L K ++ + +T + + + ++++ +K KE++ K + K K
Sbjct: 1106 KLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGK 1165
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K RK K +KK+K+KK+ K KK K+
Sbjct: 1166 ASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 42.0 bits (99), Expect = 5e-04
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
D F ++++ + + + EI ++ + K + K K ++ + K+KEK+KKK K K+
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KR K++ K KK
Sbjct: 1195 VGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
Score = 41.2 bits (97), Expect = 0.001
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 299 IREKRERKRRKKKKKRKRKRKK---------RKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ + E+K ++ +K + K + E++++ +K+ K++R K K K K
Sbjct: 1107 LNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKA 1166
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
K + K KKK+KKKK+ +
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADK 1188
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KKK +KR +KKKK KK RKKK K + ++ + ++ +KKK
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
Score = 38.9 bits (91), Expect = 0.005
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK+ +KR + KKKK+ +KK +K+K K R K+ + + ++ +KKK
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSD 1362
Score = 38.5 bits (90), Expect = 0.006
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + K+K K++ + K+KKK +KK +KKK K K+ +
Sbjct: 1289 SKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Query: 362 KKKKEKRKKR 371
+ +R ++
Sbjct: 1349 SSRLLRRPRK 1358
Score = 35.4 bits (82), Expect = 0.050
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
KR K KK+ +K + KK+KK KK RKKK + + ++ +
Sbjct: 1289 SKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Query: 361 KKKKKEKRKKR 371
+ + +K+
Sbjct: 1349 SSRLLRRPRKK 1359
Score = 35.0 bits (81), Expect = 0.065
Identities = 17/78 (21%), Positives = 40/78 (51%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ E L + + K + ++++E E+K+ ++++ + K + K + +K + K+
Sbjct: 1117 ELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKK 1176
Query: 354 EKKKKKKKKKKKEKRKKR 371
++KKKKK K K+
Sbjct: 1177 KEKKKKKSSADKSKKASV 1194
Score = 34.6 bits (80), Expect = 0.084
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K++ KK+ +K+K+ +KK +KKK K + K+ + R +KK
Sbjct: 1300 SKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKK 1359
Query: 359 KKKK 362
K
Sbjct: 1360 KSDS 1363
Score = 34.6 bits (80), Expect = 0.089
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KR K K+K KKR + +KKKK +K+ +KKK K + K+
Sbjct: 1286 PPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS 1345
Query: 369 KKR 371
+
Sbjct: 1346 ASQ 1348
Score = 33.5 bits (77), Expect = 0.23
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
E +KKKK K+ +K+K K + K+ + + R+ +K+K +++ +
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSE 1372
Score = 32.7 bits (75), Expect = 0.37
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKE-KEKKKKKRKKKKRKKK 339
D+ + + KR + ++ K KKK +K+
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRL 1314
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KKK+K E+K +KKK K + K+
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQAS 1345
Score = 30.4 bits (69), Expect = 1.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK----RKKKRKKKKRKKKKRKKEEK 355
K K K KR + K+ + + KKK KK+
Sbjct: 1261 SSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAA 1320
Query: 356 KKKKKKKKKKEKRKKR 371
KKKKK +KK RKK+
Sbjct: 1321 LKKKKKSEKKTARKKK 1336
Score = 30.0 bits (68), Expect = 2.3
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK-----KRKKKKRKKKKRKKEEKKKKKKK- 361
K KR + K+ + K K+K KKR + +KKKK +K
Sbjct: 1271 PKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKK 1330
Query: 362 ---KKKKEKRKKR 371
KKK + R K+
Sbjct: 1331 TARKKKSKTRVKQ 1343
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 43.6 bits (103), Expect = 3e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K++K K+ +EKE K K++KK++K+K+ +K KKK K K KK KK +K+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Score = 39.7 bits (93), Expect = 5e-04
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
++K+ K +K K KK+KK KK+K+ ++ KK+ K K KK KK KKE+
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Query: 369 K 369
K
Sbjct: 158 K 158
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E ++ +K+ ++ + K+ + +K+KK++K+KK +K KKK K + +K KK K
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 364 KKEK 367
K+E
Sbjct: 154 KEEG 157
Score = 37.8 bits (88), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
I + + K +K+ K +++ K K++KK+K++KK +K KKK K K ++
Sbjct: 88 INLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKAT 147
Query: 357 KKKKKKKKKEK 367
KK KK++ K
Sbjct: 148 KKTTTKKEEGK 158
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K++K+ ++ ++++ + KK+K++KK++K K K+K K K KK KK K++
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
Query: 369 KK 370
K
Sbjct: 157 GK 158
Score = 36.3 bits (84), Expect = 0.010
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E+ +K++K K+ ++K K +K+KK KKE+K +K KKK K K
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTK 140
Score = 35.9 bits (83), Expect = 0.011
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++++K+ ++ ++K+ K KK KK++K+KK +K KK+ K K KK K+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Score = 35.5 bits (82), Expect = 0.017
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
A+ + + + E +E++E + ++K+ + +K++KEK++KK K K+K +
Sbjct: 78 AYVTLAEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTK 137
Query: 341 KKKKRKKKKRKKEEKKKKKKK 361
K KK KK KK++ K
Sbjct: 138 TTKNTTKKATKKTTTKKEEGK 158
Score = 34.7 bits (80), Expect = 0.030
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++++K+ K+ + K+ K KK KK+K++K+ +K KKK K +
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
Score = 34.0 bits (78), Expect = 0.052
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+E +K++++ K ++++ K KK+K++K+EKK +K KKK +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 45.1 bits (107), Expect = 4e-05
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E R++ +KR K K++ K K K ++ K+++ + +++KK+K+ K E++ +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 360 K 360
Sbjct: 395 N 395
Score = 43.2 bits (102), Expect = 1e-04
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
I +RE+ E++ K K+K + K K + KK++ + +RKKK KK K +++ +
Sbjct: 338 DGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 43.2 bits (102), Expect = 2e-04
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
E +++ +++ +K KEK K + K +R KK + + ++KK++K+ K +++ +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 363 K 363
Sbjct: 395 N 395
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R+E EK+ +K K+K K K K + KK + ++KKK+KK K +R+
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 41.6 bits (98), Expect = 4e-04
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + +KR EK K+K + K K +R KK+R + R+K+++KK K +++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 40.5 bits (95), Expect = 0.001
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R++ +++ +K K++ K K + ++ +K++ + KKK+KK K ++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 38.9 bits (91), Expect = 0.003
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + +++ K KEK K K K ++ +K++ + +++KKE+K K +++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 32.0 bits (73), Expect = 0.44
Identities = 9/54 (16%), Positives = 31/54 (57%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +++ K+ ++ K++ K K K ++++K++ + ++KK+++K +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAK 387
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 42.7 bits (101), Expect = 6e-05
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK--KKRKKKKRKKKKRKKEEKK 356
++ + R + K K R+R+ K +K++K+ ++ KK KK + KK KK+ E KK
Sbjct: 88 LQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKK 147
Query: 357 KKKKKKKKKEKRKKR 371
K+ K ++KRKK
Sbjct: 148 SKQLDKALEKKRKKN 162
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ ++R+R K+ +K++++ KE +K +K + +K KKK + KK K+ +K +
Sbjct: 97 TLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALE 156
Query: 359 KKKKKKKEKRKK 370
KK+KK K KK
Sbjct: 157 KKRKKNAGKEKK 168
Score = 38.8 bits (91), Expect = 0.001
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR----KKKKRKKEEK 355
EK E KR + K + K K K++E++ K KK+ K+ K+ K+ KK + KK
Sbjct: 79 EEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVL 138
Query: 356 KKKKKKKKKKEKRKKR 371
KKK + KK ++ K
Sbjct: 139 KKKFDELKKSKQLDKA 154
Score = 36.5 bits (85), Expect = 0.009
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
D F K+ +D + +E E ++ KK K ++++ K + K R K + K
Sbjct: 47 LDKFRKNYKFLD-----DYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNK 101
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKK---KKKEKRKK 370
R+++ K+ K++++E K+ KK KK E +K
Sbjct: 102 DREREILKEHKKQEKELIKEGKKPYYLKKSEIKKL 136
Score = 34.6 bits (80), Expect = 0.037
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++++E + KK +K + +K KKK KK ++ + +K++KK KE+K
Sbjct: 111 HKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 28.0 bits (63), Expect = 5.2
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K+ K + K++ ++ + K R K + K+ +++ K+ KK+EK +
Sbjct: 69 EKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIK 120
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 44.8 bits (107), Expect = 7e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
EK +K + K KK K RK +++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 41.7 bits (99), Expect = 5e-04
Identities = 9/63 (14%), Positives = 22/63 (34%)
Query: 282 FAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K + V+ + + ++ K R + +K K +K K++ ++
Sbjct: 796 LPKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Query: 342 KKK 344
K
Sbjct: 856 GKA 858
Score = 39.8 bits (94), Expect = 0.002
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K K + K KK K RK K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 39.4 bits (93), Expect = 0.003
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K ++ + K +K + +K K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 39.0 bits (92), Expect = 0.004
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K +K + + +K + +K K++ EK K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKF---SRKTKQQYVASEKDGK 857
Score = 38.6 bits (91), Expect = 0.004
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K +K + K K+ + +K K++ E+ K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 38.6 bits (91), Expect = 0.004
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K +K + + KK K RK K++ +K +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 38.6 bits (91), Expect = 0.005
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K ++ K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 38.6 bits (91), Expect = 0.005
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K K + K KK K +K K++ ++ K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 38.6 bits (91), Expect = 0.005
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ +K + K KK K +K +++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 38.2 bits (90), Expect = 0.006
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K ++ + K KK K +K K++ +K+ K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 37.5 bits (88), Expect = 0.011
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 294 DTE-ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+T + E E K +K R K+ KK K ++ K++ K K
Sbjct: 801 ETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 28.6 bits (65), Expect = 5.9
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K +E + ++ K +K + + KK K ++ K+
Sbjct: 797 PKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 43.9 bits (104), Expect = 7e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK + K KKKKK+KKK KK K KK K+RK K KK +++++ +K+ K
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 41.2 bits (97), Expect = 5e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R K +K+K+KKKK KK + KK K+RK + + K+ +++++ +KK K
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 40.8 bits (96), Expect = 6e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R K KK+K+K+KK K+ K KK K+RK + K KK ++++R +++ K
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
IR + ++KKKKK+K KK K K+ K+RK + + KK ++++R +KK K
Sbjct: 248 IRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 34.7 bits (80), Expect = 0.056
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R K K+K+KK+K+ KK K KK K+++ + K KK +R++ +KK K
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 33.9 bits (78), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE---KKKKKKKKKKKEKRKKR 371
K+ + K +KKK+KKKK KK K ++ K++K + K KK +R++R
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 33.5 bits (77), Expect = 0.16
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E + ++ R K +K+K+KK+K KK K +K +++K + K +K ++R++
Sbjct: 236 SLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERL 295
Query: 354 EKKKK 358
+KK K
Sbjct: 296 QKKIK 300
Score = 28.1 bits (63), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K KK+ K K + KK R + KKK+KK++K KK K KK K
Sbjct: 219 KYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGK 278
Query: 370 KR 371
+R
Sbjct: 279 QR 280
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 44.3 bits (104), Expect = 7e-05
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK-EKRK 369
K + +KRK +E+E+KK K K+K+ KK K KKEE+ + KKKKK+ K+K
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQK 585
Query: 370 K 370
K
Sbjct: 586 K 586
Score = 33.9 bits (77), Expect = 0.12
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ + ++ + + + K + E +K K K KKRK +++++K K K+KK
Sbjct: 498 EELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLY 557
Query: 361 KKKKKEKRKK 370
KK K KK
Sbjct: 558 KKMKYSNAKK 567
Score = 31.6 bits (71), Expect = 0.68
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK------RKKKRKKKKRKKKKRKK 352
R+ E + KK K K++K +K K KK+ +KKK++ K+KK KK
Sbjct: 533 RKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLDSKK 591
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 44.0 bits (105), Expect = 8e-05
Identities = 15/69 (21%), Positives = 46/69 (66%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+E + R+ + ++ KR +KE+ +K +KR+++ +KK+++ +++++E +KK+++ +
Sbjct: 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134
Query: 363 KKKEKRKKR 371
+ E++ +
Sbjct: 135 ELIEEQLQE 143
Score = 37.1 bits (87), Expect = 0.014
Identities = 19/82 (23%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 297 ILIREKRERKRRKKKK----KRKRKRKKRK-EKEKKKKKRKKKKRKKKRKKKKR--KKKK 349
IL K+E + KK+ K + + + + EKE ++++ + +K +K+ +K+ +K
Sbjct: 43 ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
E+++++ +KK+K+ ++K++
Sbjct: 103 ELLEKREEELEKKEKELEQKQQ 124
Score = 35.9 bits (84), Expect = 0.034
Identities = 16/66 (24%), Positives = 38/66 (57%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
R++ K K+ + + K+ E+ KK+ + KK+ + K++ K + ++E ++++ +
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Query: 363 KKKEKR 368
+K EKR
Sbjct: 85 QKLEKR 90
Score = 35.5 bits (83), Expect = 0.044
Identities = 15/72 (20%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ E KR ++ K++ + K++ + K++ K + + +++ ++R+ + +K E++ +K++
Sbjct: 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE 96
Query: 362 --KKKKEKRKKR 371
+K E +KR
Sbjct: 97 NLDRKLELLEKR 108
Score = 35.1 bits (82), Expect = 0.051
Identities = 20/76 (26%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E L+ K E + + + + K R++R E +K +K+ +K+ RK + +K++ + E+K
Sbjct: 57 EALLEAKEEIHKLRNEFE-KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115
Query: 356 KKKKKKKKKK-EKRKK 370
+K+ ++K+++ EK+++
Sbjct: 116 EKELEQKQQELEKKEE 131
Score = 34.8 bits (81), Expect = 0.067
Identities = 15/80 (18%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK-----KKKRKKKRKKKKRKKKKRK 351
+R+K + K+ ++ ++ + +KE + K++ K++ K R + +++ ++R+
Sbjct: 22 YFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR 81
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
E +K +K+ +K+E ++
Sbjct: 82 NELQKLEKRLLQKEENLDRK 101
Score = 32.8 bits (76), Expect = 0.33
Identities = 13/61 (21%), Positives = 38/61 (62%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ EKR ++ + ++ +KR+E+ +KK+K ++K+++ KK++ ++ +++ +
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Query: 356 K 356
+
Sbjct: 143 E 143
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 43.7 bits (103), Expect = 9e-05
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 300 REKRERKRRKKKKKRKRKRKK-------------RKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ RE+++ KK +R + E + KK R +K + K +KK+
Sbjct: 292 AQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIA 351
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKKR 371
+K+R E + ++ ++++ +
Sbjct: 352 QKRRAAEREINREARQERAAAMARA 376
Score = 40.6 bits (95), Expect = 8e-04
Identities = 10/67 (14%), Positives = 30/67 (44%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K+ R K + K ++K +K + +++ ++ ++++ + + ++ + KKK
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 360 KKKKKKE 366
E
Sbjct: 391 IDASPNE 397
Score = 38.7 bits (90), Expect = 0.004
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK E K RKK+ +KR+ +R+ + +++R + + ++ K KK+ + +
Sbjct: 339 EKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNED 398
Query: 361 KKKKKEKRK 369
+ E+ K
Sbjct: 399 TPSENEESK 407
Score = 37.5 bits (87), Expect = 0.010
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 300 REKRERKRRKK-KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + K K +KK ++++ E+E ++ R+++ R + +R K KK+
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393
Query: 359 KKKKKK 364
+
Sbjct: 394 SPNEDT 399
Score = 37.1 bits (86), Expect = 0.011
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR------------------KKKRKKKKR 345
E K +++ + + K++++K R+ + R KK R +K
Sbjct: 282 EFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKN 341
Query: 346 KKKKRKKEEKKKKKKKKKK--KEKRKKR 371
+ K RKKE +K++ +++ +E R++R
Sbjct: 342 EAKARKKEIAQKRRAAEREINREARQER 369
Score = 35.2 bits (81), Expect = 0.046
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 299 IREKRERKRRKKKKKRKRKR---KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E + RK+ +K+R +R ++ +++ R + +R + KKK E+
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 41.7 bits (99), Expect = 9e-05
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+++K KK +E + K+ + KK K K +K+ ++ K K +KKK K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 365 KEKRKKR 371
KE+ K R
Sbjct: 92 KEEPKPR 98
Score = 37.1 bits (87), Expect = 0.004
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
K+E K +K +K+ K K + EK+K KK+ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.7 bits (86), Expect = 0.005
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++ K + +K K EK +KK ++ K K +KK+ KK+ K +
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 32.1 bits (74), Expect = 0.18
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
++ +E K++ K ++ EK+ +K K K +K+K K+++ K
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 28.6 bits (65), Expect = 2.7
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKK 330
+ E+ +K +K + + KK+ +KE+ K +
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 28.6 bits (65), Expect = 3.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKK 327
EK E+K K K K ++K+ K++E + +
Sbjct: 70 AWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 43.2 bits (102), Expect = 1e-04
Identities = 14/63 (22%), Positives = 42/63 (66%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+ +++KK ++ ++++++E++K++ + + R++ K+K + ++K ++ K++ K
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153
Query: 364 KKE 366
KKE
Sbjct: 154 KKE 156
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/86 (22%), Positives = 49/86 (56%), Gaps = 14/86 (16%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK-----RKKKRKKKKRKKKKRKKEE 354
+++++ ++ ++K+K++R+K +E+ + +++ K+K R+K ++ K++ K KKE
Sbjct: 98 AQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEA 157
Query: 355 KK---------KKKKKKKKKEKRKKR 371
+ K ++ +E+ KKR
Sbjct: 158 AESASSSLSGSAKPERNVSQEEAKKR 183
Score = 40.9 bits (96), Expect = 5e-04
Identities = 14/64 (21%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE--EKKKKKKKKKKKEK 367
K+ +++KK ++ ++K+K++++K +++ + ++R K++ +E +K ++ K++ K
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPK 152
Query: 368 RKKR 371
KK
Sbjct: 153 HKKE 156
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/113 (17%), Positives = 58/113 (51%), Gaps = 37/113 (32%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKE--KKKKKRKKKKRKKK-------------- 339
+ ++K+ER++ +++ + +++ K K +E ++K ++ K+R K
Sbjct: 107 LLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLS 166
Query: 340 ---------------------RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK ++++++++EE++K++KK++++E+RK++
Sbjct: 167 GSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 38.2 bits (89), Expect = 0.004
Identities = 19/67 (28%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 302 KRERKRRKKKKKRKRK---RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K ER +++ K++ + KK K++++K+++ ++K+RKK++++++RK+K + +K K
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMK 229
Query: 359 KKKKKKK 365
K++ K
Sbjct: 230 NVKQRPK 236
Score = 37.4 bits (87), Expect = 0.006
Identities = 18/86 (20%), Positives = 52/86 (60%), Gaps = 17/86 (19%)
Query: 300 REKRERKRRKKKKKR--------------KRKRKKRKEKEKKKKK---RKKKKRKKKRKK 342
+ ++ K+R K K+ K +R +E+ KK+ + KK K+++++++
Sbjct: 141 KAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKRE 200
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKR 368
++R+K+++K++E++++K+K ++ ++
Sbjct: 201 EERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 36.2 bits (84), Expect = 0.017
Identities = 15/68 (22%), Positives = 47/68 (69%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + +++ +KR ++ +K K+++++++++R+K+RKK++ ++++++K E+ +K
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWM 228
Query: 362 KKKKEKRK 369
K K++ K
Sbjct: 229 KNVKQRPK 236
Score = 33.2 bits (76), Expect = 0.15
Identities = 14/48 (29%), Positives = 38/48 (79%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+K +++++K++++R+++RKK++E+E++K+K ++ +K + K+R K
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 32.0 bits (73), Expect = 0.40
Identities = 12/57 (21%), Positives = 37/57 (64%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+++ + KK K++++KR++ + K++KK++ ++++++K + ++ K K+ K
Sbjct: 180 AKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 44.0 bits (103), Expect = 1e-04
Identities = 15/68 (22%), Positives = 41/68 (60%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E + + + K R K + + ++EK++ + ++ ++++ KK++++++R ++ K+
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069
Query: 364 KKEKRKKR 371
KK +KKR
Sbjct: 1070 KKRLKKKR 1077
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
D IV I +E++ER ++ K + KK KE+E++ +K K+ KK+ +KK+
Sbjct: 1019 DRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 38.6 bits (89), Expect = 0.005
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I+++ ++R K +++++R ++ KE++ K++K++ ++ RK K+ K+ KKK
Sbjct: 1017 IKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Query: 359 K 359
+
Sbjct: 1077 R 1077
Score = 37.8 bits (87), Expect = 0.010
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKK----RKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ +++E+ + + K++ + ++ K+ +KEKE++++ RK K KKR KKKR
Sbjct: 1019 DRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 34.3 bits (78), Expect = 0.11
Identities = 14/64 (21%), Positives = 35/64 (54%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ +R + + ++K + K R K + K +++K+R + ++ K+++ KKEK
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEK 1051
Query: 368 RKKR 371
+++
Sbjct: 1052 EREQ 1055
Score = 30.9 bits (69), Expect = 1.5
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I K +R +R + ++K + K + K++ K ++ K++ + K++
Sbjct: 985 IESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEE 1044
Query: 359 KKKKKKKEKRKK 370
+ KK+KE+ ++
Sbjct: 1045 EIGKKEKEREQR 1056
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 43.9 bits (104), Expect = 1e-04
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ D E L REK E++ K++K+ ++ +K+ ++K+K+ +K +K K K+++ K
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSA 606
Query: 352 KEE--------------KKKKKKKKKKKEKRKK 370
+E KK++KK K+ +K+ K
Sbjct: 607 FDETGLPTHDADGEEISKKERKKLSKEYDKQAK 639
Score = 41.9 bits (99), Expect = 4e-04
Identities = 16/45 (35%), Positives = 33/45 (73%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K K + ++EKE+K+ +++K+ +K +K++++KKK+ +K EK K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 39.2 bits (92), Expect = 0.003
Identities = 13/45 (28%), Positives = 34/45 (75%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K +KE+ ++++++K+ K++K+ ++ KK+ +K++K+ +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 38.5 bits (90), Expect = 0.005
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K++ +++K +K+ K++KR ++ KK+++KKKK+ EK +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 37.3 bits (87), Expect = 0.011
Identities = 14/45 (31%), Positives = 33/45 (73%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K ++E +++K++++ K +K+ +K K++++K+KKE +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 37.3 bits (87), Expect = 0.011
Identities = 14/45 (31%), Positives = 32/45 (71%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K K+ ++EK++K+ K++++ ++ KK+ +KKK++ E+ +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 35.8 bits (83), Expect = 0.032
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K K++ ++ K +K KE+K+ ++ KK+ +KK+K+ ++ +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.8 bits (83), Expect = 0.036
Identities = 14/43 (32%), Positives = 32/43 (74%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K K++ +++K +K+ K++++ +K KK+E+KKKK+ +K ++
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.0 bits (81), Expect = 0.059
Identities = 13/45 (28%), Positives = 31/45 (68%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K K + ++ K++++ K +K+ RK +++++KKKK+ +K ++ K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 43.5 bits (103), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 67 DNPKLAIVEAVCITW--FSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYIS--LFLL 122
L + F V + ++ E ++ + N++DL + + L +
Sbjct: 205 SLFLLLCEIIFLVFVLYFVVAEITKIR--REGPRYLRSVWNLLDLAIVALSVVVIVLHIY 262
Query: 123 -ESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRI----------LRILKLARHSTGLQSL 171
+ +T ++V+ F D RV ++ ++ RI L++ K+ R + +
Sbjct: 263 RDFLATQLWKQVEASPVDFTDFDRVARLDQLYRIILAFLLFLTWLKLFKVLRFNRTMSLF 322
Query: 172 GFTLRNSYKEL-----GLLMLFLA---MGVLIFSS 198
TL + KEL ++LFLA +G L+F S
Sbjct: 323 TKTLSRALKELLGFAVMFVILFLAYAQLGYLLFGS 357
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 42.2 bits (100), Expect = 1e-04
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 24/92 (26%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK---------------KRKKKKRK 346
K++ ++ K K K+K R+E + + ++RK+KK+ K K K + +K
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQK 61
Query: 347 KKKR---KK------EEKKKKKKKKKKKEKRK 369
K R KK EEK K KKKK K +K K
Sbjct: 62 KDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPK 93
Score = 36.0 bits (84), Expect = 0.013
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KKKK K+ K K KK+ +++ E +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 36.0 bits (84), Expect = 0.014
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK------RKKEEKKKKKKKKKKK 365
KK+K K+ K K KKK +++ + R++K++KK K R E + K K + +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQ 60
Query: 366 EK 367
+K
Sbjct: 61 KK 62
Score = 34.9 bits (81), Expect = 0.026
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KKKK KR K K KK+ +EE + +++K+K+K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 42.7 bits (101), Expect = 1e-04
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
E+E ++K+ +K K K K KK K K +++EK K++K++K +
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+EKE++K K K + KK K K ++K++ K EK++K ++
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/45 (26%), Positives = 31/45 (68%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+++EK+++K K + K +K K K ++++K +++K++K ++ E
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/62 (24%), Positives = 34/62 (54%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K+++K K K + +K K K +K+K K+++++K ++ + E + +K +
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 364 KK 365
+K
Sbjct: 100 RK 101
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/60 (23%), Positives = 34/60 (56%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +++ +K K K K K+ K + ++++K KR+K+++ E ++ + + EK + R
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
Score = 37.7 bits (88), Expect = 0.006
Identities = 15/64 (23%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ ++ ++K K K K +K + K ++++K KR+K+ +K R+ ++ E++ +K + +
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKE-EKGLRELEEDTPEDELAEKLRLR 100
Query: 364 KKEK 367
K ++
Sbjct: 101 KLQE 104
Score = 34.6 bits (80), Expect = 0.055
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-------KKKRKKKKRKKE 353
EK E K + K + +K K K +EK+K KR+K+++ + + K + RK +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
Query: 354 E 354
E
Sbjct: 104 E 104
Score = 32.3 bits (74), Expect = 0.34
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ K K + KK + + +K K K +K++K ++ + + + +K + +K ++
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQE 104
Score = 29.6 bits (67), Expect = 2.2
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
K + EK K K+KK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 28.1 bits (63), Expect = 7.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
EK K +K K K+KK + K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAKLNVGGAND 222
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 41.1 bits (97), Expect = 1e-04
Identities = 14/68 (20%), Positives = 36/68 (52%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ + K++ + KK++EK+ + +K K ++K + + K +K +E + + +++
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Query: 363 KKKEKRKK 370
K E +K
Sbjct: 70 LKAEAKKM 77
Score = 39.9 bits (94), Expect = 3e-04
Identities = 15/70 (21%), Positives = 37/70 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ + K+ K K K + EK++++KK + +K K ++K + + K E++ ++ +
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Query: 361 KKKKKEKRKK 370
+ + + K
Sbjct: 63 AELARRELKA 72
Score = 37.2 bits (87), Expect = 0.002
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+K K K +++ K +K++++K+ + K K +++ + E +K +K+ ++ E
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Query: 369 KKR 371
R
Sbjct: 65 LAR 67
Score = 37.2 bits (87), Expect = 0.003
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
VD I + + K++++KK K K +EK + + +K +++ + + + +++ K
Sbjct: 13 VDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKA 72
Query: 353 EEKKKKKKKK 362
E KK +K
Sbjct: 73 EAKKMLSEKG 82
Score = 37.2 bits (87), Expect = 0.003
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K K +KK++ KK + +K K +K + + E+ +K+ ++ + + R++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
Score = 36.1 bits (84), Expect = 0.007
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++ K K +K K+K K +K+++++K + K K EEK + + +K +KE +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 370 KR 371
Sbjct: 61 LE 62
Score = 35.3 bits (82), Expect = 0.012
Identities = 12/64 (18%), Positives = 36/64 (56%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+E+ + +KK++ K+ ++ K ++K + + K +++ ++ + + ++E K + KK
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
Query: 362 KKKK 365
+K
Sbjct: 78 LSEK 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/63 (17%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK-EK 367
+ ++++ K+ + K+K + +KK+++K+ + ++ K +E+ + + +K +K+ E+
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 368 RKK 370
+
Sbjct: 61 LEA 63
Score = 33.8 bits (78), Expect = 0.036
Identities = 14/69 (20%), Positives = 36/69 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E E K K+ K K++ + EKK++++K + K + + K + ++ +K+ ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 361 KKKKKEKRK 369
+ + +R+
Sbjct: 61 LEAELARRE 69
Score = 33.4 bits (77), Expect = 0.047
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKK--KKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
EK + K K K K K++E+KK ++ K +++ + + +K +++ EE + +
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Query: 359 KKKKKKKEKRKK 370
+++ K + KK
Sbjct: 65 LARRELKAEAKK 76
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 42.4 bits (100), Expect = 1e-04
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ L+ EK+++K KKK+K ++ K+RKE+EKK KK +++ ++ KK K KK+K
Sbjct: 163 EKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIV 222
Query: 354 EKKKKKKKKKKKEKRKK 370
+ K K K K++RK+
Sbjct: 223 KDKDGKVVYKWKKERKR 239
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/76 (26%), Positives = 45/76 (59%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
L + +++KKK +K+++ ++ KE+K++++K KK +++ + ++ KK K ++K
Sbjct: 160 SQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKK 219
Query: 356 KKKKKKKKKKEKRKKR 371
K K K K + K+
Sbjct: 220 KIVKDKDGKVVYKWKK 235
Score = 31.2 bits (71), Expect = 0.67
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V VD E + + + +R+ R + +K +++KK+ KK++K +
Sbjct: 126 VFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYK 185
Query: 351 KKEEKKKKKKKKKKKEKR 368
+ +E+K+++KK KK E+R
Sbjct: 186 ELKERKEREKKLKKVEQR 203
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/70 (27%), Positives = 44/70 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+KR+ ++ KK + KK E + + ++ + K K +K K+++ ++K++E+ + K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 361 KKKKKEKRKK 370
+K++K++RKK
Sbjct: 425 EKRQKDERKK 434
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+++ K KK ++ KK + K + + + K K++K K+EE +KK+K++ ++K
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Query: 369 KKR 371
K++
Sbjct: 426 KRQ 428
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/68 (22%), Positives = 42/68 (61%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+R+ K+ +K + +K E K + ++ + K K++K K+++ +K++K++ + K+
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Query: 364 KKEKRKKR 371
K++K +++
Sbjct: 426 KRQKDERK 433
Score = 39.0 bits (91), Expect = 0.003
Identities = 14/68 (20%), Positives = 45/68 (66%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R++ ++ KK + +K + K++ ++ + K +++K K+++ +KK++++ ++ K+K
Sbjct: 367 RQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEK 426
Query: 360 KKKKKKEK 367
++K +++K
Sbjct: 427 RQKDERKK 434
Score = 35.5 bits (82), Expect = 0.042
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
K +L+ +K + + + + K ++EK K+++ KK+K + K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 343 KKRKKKKRKK 352
+KR+K +RKK
Sbjct: 425 EKRQKDERKK 434
Score = 35.2 bits (81), Expect = 0.055
Identities = 11/61 (18%), Positives = 34/61 (55%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K + +K + + + + K K+++ K++ +K++K++ + K K+++ ++K
Sbjct: 374 YNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Query: 359 K 359
K
Sbjct: 434 K 434
Score = 30.5 bits (69), Expect = 1.5
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K ++ K ++++ K+ +K + KK + K + ++ E K K++K K++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 366 EKRKKR 371
E KK+
Sbjct: 411 ENEKKQ 416
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 43.0 bits (101), Expect = 2e-04
Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 303 RERKR-----RKKKKKRKRKRKKRKEKEKKKKKRKKKK-RKKKRKKKKRKKKKRKKEEKK 356
RER R R+ K R+R R++ + +++ +++R + R ++ + + R + +
Sbjct: 5 RERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGD 64
Query: 357 KKKKKKKKKEKRKK 370
+ ++ ++ R
Sbjct: 65 RSYRRDDRRSGRNT 78
Score = 38.0 bits (88), Expect = 0.008
Identities = 10/69 (14%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK---KKRKKEEKKKKKKKK 362
+ R +++ R R +R +K +++ +R+ + R + R+++ R ++ + + + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 363 KKKEKRKKR 371
+ ++ +R
Sbjct: 61 PRGDRSYRR 69
Score = 36.4 bits (84), Expect = 0.021
Identities = 10/69 (14%), Positives = 34/69 (49%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
RER RR+ + + + +R++ ++ + ++ R + + + + + + R+ + + + K+
Sbjct: 21 RERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDRRSGRNTKE 80
Query: 363 KKKEKRKKR 371
E +
Sbjct: 81 PLTEAERDD 89
Score = 35.3 bits (81), Expect = 0.051
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + + R +++ R R R +R+ + R+ + R + + R + R ++
Sbjct: 15 RRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDRRS 74
Query: 360 KKKKKKE 366
+ K+
Sbjct: 75 GRNTKEP 81
Score = 32.6 bits (74), Expect = 0.38
Identities = 11/67 (16%), Positives = 30/67 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R R R + + +R+R R + + + + R + + R + ++ R+ K+
Sbjct: 24 SRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDRRSGRNTKEPLT 83
Query: 362 KKKKEKR 368
+ +++ R
Sbjct: 84 EAERDDR 90
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 43.3 bits (102), Expect = 2e-04
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK--KRKKKKRKKKKRK 351
+ +IL E+ ERK++K++K ++++ KK K +K+ K + + ++ KK +KK RK
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 352 KEE 354
++
Sbjct: 69 RDV 71
Score = 41.4 bits (97), Expect = 7e-04
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+K +++ ++K+K+ K KEK+ KK K +++ K K + ++ KK +KK +K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 364 KKE 366
+
Sbjct: 69 RDV 71
Score = 40.3 bits (94), Expect = 0.002
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K + + +RKK+KE++ K+K+ KK K +K K K + ++ KK +KK +++
Sbjct: 10 KKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Score = 39.5 bits (92), Expect = 0.003
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R +KK + + +++K+KE+K K+++ KK K +K+ K K + ++ + KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 362 KKKKEKRK 369
+KK +++
Sbjct: 62 SEKKSRKR 69
Score = 38.0 bits (88), Expect = 0.007
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK-----KKK 362
+ + + ++K +E E+KKKK +K K K+ +K K +K+ + K + ++ KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 363 KKKEKRKK 370
+K+ RK+
Sbjct: 62 SEKKSRKR 69
Score = 38.0 bits (88), Expect = 0.008
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + E +++ ++ ++KK++EK K+K+ +K K +K+ K K + ++ KK
Sbjct: 3 RTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
Query: 360 KKKKKKE 366
+KK +K
Sbjct: 63 EKKSRKR 69
Score = 38.0 bits (88), Expect = 0.009
Identities = 16/66 (24%), Positives = 37/66 (56%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R + + ++K ++ E++KKK+++ K+K KK K +++ K + + ++ KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 366 EKRKKR 371
++K R
Sbjct: 62 SEKKSR 67
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 40.8 bits (96), Expect = 2e-04
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK-RKKKKRKKKKRKKEEKKKKKKKK 362
E KR + +KK K K ++ K K KK++ K+K+++++ K +K+R + EKKK + K
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKL 117
Query: 363 KKKEKR 368
K+EK+
Sbjct: 118 MKEEKK 123
Score = 34.7 bits (80), Expect = 0.025
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ K + +R K K K++ K+++++E+ K + ++++ +KK+ + K KEEKK
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 33.9 bits (78), Expect = 0.042
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRK-------------EKEKKKKKRKKKKRKKKRKKKKR 345
+ +K KKKKKR + K+ + RKK K K +R K K
Sbjct: 20 SKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKA 79
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK++ +KE++K+++ K E K+R
Sbjct: 80 KKEEAEKEKEKEERFMKALAEAEKER 105
Score = 33.9 bits (78), Expect = 0.048
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ KR RKK KEK ++ K + KK+ +K K+K+ + K E +K++ + +KKK + K
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKL 117
Query: 371 R 371
Sbjct: 118 M 118
Score = 30.4 bits (69), Expect = 0.82
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 21/81 (25%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRK---------------------KKKRKKKRKKKKRKK 347
K + K K KR + K+ KKKKKR + KR + RKK K K
Sbjct: 13 KNEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKL 72
Query: 348 KKRKKEEKKKKKKKKKKKEKR 368
++ K + KK++ +K+K+KE+R
Sbjct: 73 RRDKLKAKKEEAEKEKEKEER 93
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 42.1 bits (100), Expect = 3e-04
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 314 RKRKRKKRKEKE----KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+RK+ ++ E E ++ K K++ K KK K K ++KK+K++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 370 KR 371
R
Sbjct: 90 PR 91
Score = 38.7 bits (91), Expect = 0.004
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 282 FAKSMDLIDVIVDTEILIREKRERKRRKKKK-------KRKRKRKKRKEKEKKKKKRKKK 334
AK++ ++ I LI +RK+ +K + ++ ++ K+ + KK K
Sbjct: 9 LAKTVTVVVAIAAVVALIVSLAQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKA 68
Query: 335 KRKKKRKKKKRKKKKRKKEEKKK 357
K ++KK+K++ K K + K +
Sbjct: 69 WHKAQKKKEKQEAKAAKAKSKPR 91
Score = 35.6 bits (83), Expect = 0.029
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+R+K +K ++ ++ K++ K KK K K +K+K++++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 365 K 365
Sbjct: 90 P 90
Score = 32.1 bits (74), Expect = 0.47
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 310 KKKKRKRK--------RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++K+ +K ++ KE +++ K K++ K K +KKK++++ + K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 362 KK 363
+
Sbjct: 90 PR 91
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 284 KSMDLIDVIV----DTEILIREKR--ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
K DV+ + E+ + + R E + +KKKKK+K+K KK +
Sbjct: 152 KPYSEEDVVPLNPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVP 211
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + + KK +KK+ +K + K
Sbjct: 212 TELSSGAGQVGEAKKLKKKRSIAPDNEKSEVYK 244
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K + + ++ K+K+KKKKK+ KK + E + + K+ +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLK 228
Query: 369 KKR 371
KKR
Sbjct: 229 KKR 231
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K R + + +K+K+KKKKK KK + + + + KK K+K+
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Query: 371 R 371
Sbjct: 232 S 232
Score = 31.9 bits (73), Expect = 0.44
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+E+ + K R +++R KK+KKKK+KK K+ + +
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 31.5 bits (72), Expect = 0.53
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K+++K+ KK + + + + KK K+K+ EK +
Sbjct: 184 KKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSEVY 243
Query: 360 KKKKKKEKRKK 370
K K++K
Sbjct: 244 KSLFTSHKKEK 254
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+K K+ K++ K++K+KK+KKKK+KK+ KK KKKK
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
E++K K+ K+K K+K++KKK+KKKK+KK KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 37.4 bits (87), Expect = 0.003
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
L+ E++ K+ K+K +++K+KK+K+K+KKKK KK +KKK
Sbjct: 94 LVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 36.2 bits (84), Expect = 0.007
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++ K K K+KK+KK+KKKK+KKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 35.8 bits (83), Expect = 0.009
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++ KEK K+KK++KKKK+KKK+K K+ KK+K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 35.4 bits (82), Expect = 0.011
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
E++K ++ K K K+KK+K+KKKK+KK++ KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 35.4 bits (82), Expect = 0.013
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K+ KEK K+K++KKK+KKK+KKK KK +KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 35.4 bits (82), Expect = 0.013
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ K K K++K+KK+KK++KKKK KK K+K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 35.0 bits (81), Expect = 0.016
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ K++ K+K++K++KKKKKKKK K+ KK+
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 34.7 bits (80), Expect = 0.022
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K+ K++ +++K+KKK+KKKK+KK KK +KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.9 bits (78), Expect = 0.037
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ K+K K+KK+KK++KKKKKKK KK +KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 33.9 bits (78), Expect = 0.038
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
E+K K+ K K K+KK+K+K+KKKKK+K K+ K+KK
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.5 bits (77), Expect = 0.052
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
K+ K K +++K+KKKKK+KKKK+ K+ KK+K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.77
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
I+ + +E+ ++KK+KK+K+K+KK+K +K KK+K
Sbjct: 100 IVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 42.2 bits (99), Expect = 3e-04
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K E KKK + + K K K + + K K +K+ + ++K +K+K K K K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245
Query: 362 KKKKEKRKKR 371
+ +++
Sbjct: 246 AAAAKAAERK 255
Score = 38.4 bits (89), Expect = 0.004
Identities = 18/78 (23%), Positives = 49/78 (62%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ + +E++ + K K+ +++R K+ EKE+ K + ++K+ ++ K+ + ++K+++++
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQ 137
Query: 354 EKKKKKKKKKKKEKRKKR 371
+K ++KKK E K +
Sbjct: 138 ARKAAAEQKKKAEAAKAK 155
Score = 38.4 bits (89), Expect = 0.005
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E L + ++ER + ++++K+ + +K+ + E+K+++ + +K ++KKK K + E
Sbjct: 101 ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA 160
Query: 356 KKKKKK---KKKKEKRKK 370
K K KKK E+ K
Sbjct: 161 AKLKAAAEAKKKAEEAAK 178
Score = 37.6 bits (87), Expect = 0.007
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K+ K ++ + + K K +KK + +++ KKK K K K K
Sbjct: 192 AKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKA 251
Query: 360 KKKKKKEK 367
++K
Sbjct: 252 AERKAAAA 259
Score = 36.9 bits (85), Expect = 0.013
Identities = 19/84 (22%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 291 VIVDTEILIRE-KRERKRRKKKKKRKRKRKKRKEK---EKKKKKRKKKKRKKKRKKKKRK 346
V+VD ++++ R + ++ KK +++RKK++E+ E K K+ +++R K+ +K++ K
Sbjct: 53 VMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLK 112
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKK 370
++++K+ ++ +K+ + +++++++
Sbjct: 113 AQEQQKQAEEAEKQAQLEQKQQEE 136
Score = 36.1 bits (83), Expect = 0.023
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK--RKKKKRKKEEKKKKK 359
+++++ + +K+ + ++K+++E+ +K +KKK + + K K K E KKK +
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174
Query: 360 KKKKKKEKRKKR 371
+ K E+ K +
Sbjct: 175 EAAKAAEEAKAK 186
Score = 35.7 bits (82), Expect = 0.033
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KRKKEEKK 356
++ E +++ + ++++++ + RK ++KKK + K K + K K K+K EE
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177
Query: 357 KKKKKKKKKEKRKKR 371
K ++ K K +
Sbjct: 178 KAAEEAKAKAEAAAA 192
Score = 34.9 bits (80), Expect = 0.057
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E++ RK ++KK+ K + E K K + +KK + K ++ + K E KK
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKK 194
Query: 361 KKKKKEKRKK 370
K + + K
Sbjct: 195 KAEAEAKAAA 204
Score = 34.9 bits (80), Expect = 0.062
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 301 EKRERKRRKKKKKRKRK----RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
EK+ + +K+++++ RK +KK+ E K K + K K + KK+ ++ K E+
Sbjct: 124 EKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEA 183
Query: 357 KKK----KKKKKKEKRKK 370
K K KKK E K
Sbjct: 184 KAKAEAAAAKKKAEAEAK 201
Score = 34.5 bits (79), Expect = 0.081
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 300 REKRERKRRKKKKKRKRK---RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ E+K++ + K K K + E KKK + K ++ K K +KK E +
Sbjct: 140 KAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Query: 357 KKKKKKKKKEKRK 369
K +K K + +
Sbjct: 200 AKAAAEKAKAEAE 212
Score = 33.0 bits (75), Expect = 0.21
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK---KKKRKKKKRKKEEKK 356
++ + +++++++ RK +++K+ E K K + K K KKK ++ + EE K
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAK 184
Query: 357 KKKKKKKKKEKRKK 370
K + K+K +
Sbjct: 185 AKAEAAAAKKKAEA 198
Score = 33.0 bits (75), Expect = 0.22
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 299 IREKRERKRR----KKKKKRKRKRKKRKEKEKKK-KKRKKKKRKKKRKKKKRKKKKRKKE 353
+++ E+ R+ +KKK K K E K K KKK ++ K + K K +
Sbjct: 131 QKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAA 190
Query: 354 EKKKKKKKKKKKEKRKKR 371
KKK + + K K +
Sbjct: 191 AAKKKAEAEAKAAAEKAK 208
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 42.0 bits (98), Expect = 4e-04
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 39/107 (36%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK---------------------------- 335
E+K +K KKK K++++K ++K+KKK+ K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVS 255
Query: 336 -----------RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + ++ K+ K +KK+++K+K++KKKKK+ R
Sbjct: 256 GTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 37.0 bits (85), Expect = 0.017
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K + + K +K +KK +K KK++K+EK+K++ K KKKE
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 35.8 bits (82), Expect = 0.039
Identities = 17/100 (17%), Positives = 41/100 (41%)
Query: 246 SNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRER 305
+ ++EK +R + ++ + + + A + + + +
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSE 262
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
K + + +K K K+KK++K K++K+KKK+ R
Sbjct: 263 PDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 35.4 bits (81), Expect = 0.041
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ R + K EK +KK KK +KK+K++K+K + ++KKK+ + K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 35.4 bits (81), Expect = 0.043
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ + E K +K +KK KK K+K+KK K++E+ K KKK+ + K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 35.4 bits (81), Expect = 0.047
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K + +R+ ++R EK+K++KK+++K+++ +R+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 35.4 bits (81), Expect = 0.050
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K + E K K ++K KK KKK++K++EK++ K KKK+ E K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 35.0 bits (80), Expect = 0.068
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 283 AKSMDLIDVIVDTEIL-IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
A +DL + D+E L +++ R + K +K EK+ KK K+K+KK K+K +
Sbjct: 158 ALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGD---VPAVEKKSKKPKKKEKKEKEKER 214
Query: 342 KKKRKKKKRKKEE 354
K +KK+ +
Sbjct: 215 DKDKKKEVEGFKS 227
Score = 34.7 bits (79), Expect = 0.072
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + +++ R++ EK K++KKK++KEKR +R
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRR 112
Score = 34.7 bits (79), Expect = 0.076
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
E +R +++ ++ ++ KK++EKEK+ ++R
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 34.7 bits (79), Expect = 0.082
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 311 KKKRKRKRKKRKEKEKK---KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K R + K EK +KK KK K+K+K++K+K + K +KKE + K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 34.3 bits (78), Expect = 0.095
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+D+ +D + EK ++ + + K K +KK K+ KKK KK+++K++ K K
Sbjct: 159 LDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDK 218
Query: 349 KRKKEEKK 356
K++ E K
Sbjct: 219 KKEVEGFK 226
Score = 33.9 bits (77), Expect = 0.14
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 43/112 (38%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKK------------------------------- 328
+ K+ +K+ KK+K+++R + K+KE E K
Sbjct: 198 KSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGT 257
Query: 329 ------------KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ + KK K +KKK+RK+K+ KK++KK + +
Sbjct: 258 APDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGG 309
Score = 33.9 bits (77), Expect = 0.16
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++ R K +K ++K K+ KKK KK+K K+ +K KKK+ + K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 33.1 bits (75), Expect = 0.21
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K + +R+ R+ EK K+++KK++++K+ +++ E+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 33.1 bits (75), Expect = 0.28
Identities = 9/33 (27%), Positives = 27/33 (81%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K ++++R +++ +K++++KKK++K+K+ +R+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.7 bits (74), Expect = 0.33
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K ++++ +++ +K KR+KKKR+KE++ +++ E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 32.3 bits (73), Expect = 0.48
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKR 331
E+ R R++ +K ++ K+K+ KEK +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 31.6 bits (71), Expect = 0.76
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
K ++ +R R++ ++ +++KKKR+K+KR ++R
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 1.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K +++++ +++ K KR+KKKR+K+KR +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 1.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKE 325
R++ E+ +R+KKK+ K KR +R+
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 30.0 bits (67), Expect = 2.3
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 323 EKEKKKKKRKKKKRKKKRKK-----KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EK +K R + K K +K+ KK +KKE+K+K+K++ K K+K +
Sbjct: 171 EKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 29.6 bits (66), Expect = 2.9
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K +++R+ ++R +K K++K+K++K K+ ++ + E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 29.3 bits (65), Expect = 3.4
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
K ++++ R+R K ++EK+K++K+++ ++R
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 29.3 bits (65), Expect = 4.2
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K +++R+ +++ K+K +KKK+ K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.9 bits (64), Expect = 4.8
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
V E E K + ++ +K + K+K++ K+K+++KKKK+ +
Sbjct: 252 NTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHS 306
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 41.3 bits (97), Expect = 4e-04
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ K K++ + EKK KK K K + K + K K K + + K+ K K
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 40.9 bits (96), Expect = 5e-04
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ + + K KEK K +KK KK K K K K K + K K + + KK K K
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 36.3 bits (84), Expect = 0.015
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K + + K K+K K +K+ KK K K + K K K + K + K KK +
Sbjct: 66 QPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Query: 369 KKR 371
K
Sbjct: 126 AKA 128
Score = 35.5 bits (82), Expect = 0.028
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E K K K K K+ +K K K K K + K + K + K KK + K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 34.8 bits (80), Expect = 0.050
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ + + ++ K + + + K K+K K +K+ KK + K + K K K K K + +
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Query: 369 KK 370
K
Sbjct: 117 PK 118
Score = 34.4 bits (79), Expect = 0.069
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + + ++ + + + + K K K K +KK +K K + K + K K K K +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Query: 366 EKRKK 370
+ +K
Sbjct: 116 KPKKP 120
Score = 33.6 bits (77), Expect = 0.11
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E K ++K K K K KK K K K K K K K K + K KK K K
Sbjct: 73 PETPPEPTPPKPKEKPKPEK-KPKKPKPKPKPKPK-PKPKVKPQPKPKKPPSKTAAKAPA 130
Query: 356 KKKKKKKKKKEKRKKR 371
+ +
Sbjct: 131 APNQPARPPSAASASG 146
Score = 33.2 bits (76), Expect = 0.15
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + E++ K + + + K K+K + +++ KK K K K K K K +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 40.9 bits (96), Expect = 4e-04
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ K K K + + + K +K K K + +R KK +E+K++KKK KKKK
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 40.2 bits (94), Expect = 7e-04
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R KR + + +K + K K E K + K K K K + ++ KK ++KK
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 360 KKKKKKEKRK 369
++KKK +K+K
Sbjct: 68 EEKKKPKKKK 77
Score = 37.1 bits (86), Expect = 0.007
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R + +K K + K + K + K +K + K + +R K+ ++KK++KKK
Sbjct: 14 RALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
Query: 367 KRKK 370
K+KK
Sbjct: 74 KKKK 77
Score = 36.7 bits (85), Expect = 0.011
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R +R + K K K+K + K + K +K K K + E KK ++KK
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 365 KEKRKKR 371
+EK+K +
Sbjct: 68 EEKKKPK 74
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 41.5 bits (98), Expect = 5e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 184 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 243
L+ + G L D S+ F+++ +TM+TVGYGDI P + ++
Sbjct: 146 SLLFYSTFGALYLG--------DGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARL 197
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 41.9 bits (98), Expect = 5e-04
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK + + + K R+R++KKRK + KK K KK +K K+K K+ K +
Sbjct: 548 EKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQ 607
Query: 361 KKKKKE 366
+ K E
Sbjct: 608 ETKAVE 613
Score = 40.4 bits (94), Expect = 0.001
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I + + R K + +RK+K+++ KK + KK+RK ++K KK K
Sbjct: 547 IEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKL 606
Query: 359 KKKKKK 364
++ K
Sbjct: 607 QETKAV 612
Score = 40.0 bits (93), Expect = 0.002
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK K EK K + + + ++R+KKKRK++ KK K KK++K KEK
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEK 590
Score = 37.3 bits (86), Expect = 0.011
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK K K K ++ K ++R RKKKRK++ KK K ++++K K+K +
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRER----RKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAK 596
Query: 369 KK 370
K
Sbjct: 597 KS 598
Score = 36.1 bits (83), Expect = 0.026
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK--KKKK 365
K K + R K R+ ++KK+K+R KK K KK+++ K++ KK K +
Sbjct: 548 EKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQ 607
Query: 366 EKRKK 370
E +
Sbjct: 608 ETKAV 612
Score = 33.0 bits (75), Expect = 0.24
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E ++ K ++ + R +K ++++K+K+K+R K+ K KK+++ +EK KK
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKS 598
Query: 364 KKEKRKK 370
K
Sbjct: 599 SSAFFAK 605
Score = 32.3 bits (73), Expect = 0.44
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E KK K +K K + R K R+++K+K++ + KK K K++RK
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIG 587
Score = 30.0 bits (67), Expect = 2.4
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + +K K + R + + +KKK++++ +K K KK +K ++K + KK
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKS 598
Query: 361 KK---KKKEKRKK 370
K ++ K
Sbjct: 599 SSAFFAKLQETKA 611
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 41.4 bits (97), Expect = 6e-04
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
REK +++R ++ + + ++ KR+ + K + + + ++K R K+ KK+ KK
Sbjct: 334 REKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSV 393
Query: 360 K---------KKKKKEKRKK 370
KKK KEK+
Sbjct: 394 DKPLHPSWEAKKKAKEKKAN 413
Score = 39.0 bits (91), Expect = 0.003
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++++K++K + ++ E E ++ KR+ K R + + ++K ++ K+ +KKK K+
Sbjct: 332 KEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKP 391
Score = 34.8 bits (80), Expect = 0.062
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR----KKKKRKKEEK 355
+ KRE K + + + ++K + K+ +KKK KK K + KK+ KE+K
Sbjct: 352 QAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKK 411
Query: 356 KKKKKKKKK 364
K + KK
Sbjct: 412 ANAKFQGKK 420
Score = 34.4 bits (79), Expect = 0.084
Identities = 16/81 (19%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKK--------KKKRKKKKRKKKRKKKKRKKKKR 350
I + K+ K+K R+ +R ++ EKK KK+R+K++++++ ++ + + ++
Sbjct: 294 IDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQA 353
Query: 351 KKEEKKKKKKKKKKKEKRKKR 371
K+E K + + + +
Sbjct: 354 KREGGDAKAGRAAEPTGSRTQ 374
Score = 31.7 bits (72), Expect = 0.63
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K E K KK K KK+ KK KKK+ K+ K +E++ + + + K E
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE 184
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K +K K KKK +K KK++ +E K +++ + + +
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDES 181
Score = 29.4 bits (66), Expect = 3.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K KK K K+K KK KKK+ K+ K +++ + +++ K
Sbjct: 145 KAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE 184
Score = 29.4 bits (66), Expect = 3.4
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKK---KKRKKEEKKKKKKKKKKKEKRKKR 371
++ + + +K KRK +R ++ R+ KK K KK+++K++++R+ R
Sbjct: 292 EDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGR 344
Score = 28.3 bits (63), Expect = 7.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K + K +K K KKK K K KK++ K K +++ + E++ K
Sbjct: 137 DKILGIETKAKKGKAKKKTK-KSKKKEAKESSDKDDEEESESEDESKS 183
Score = 27.9 bits (62), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K KK K KK+ KK KKK+ K+ +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDE 172
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 39.2 bits (92), Expect = 6e-04
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK---KKRKKKKRKKEEKKKKKKK 361
R K + + K+ +++ +K++K +K++++K+ K +K +++KR +E +K K K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 36.9 bits (86), Expect = 0.004
Identities = 13/55 (23%), Positives = 37/55 (67%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K R ++++E+++++K+ K++K +K+++ K +K ++E++ ++ +K K K
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 34.6 bits (80), Expect = 0.025
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 16/91 (17%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK---- 352
I I EKRE K R+K++K +++ K+++ + +K +++KR ++ +K K K R
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDED 71
Query: 353 --EEKKKKK----------KKKKKKEKRKKR 371
EE K+++ +KKK+K +K +
Sbjct: 72 YDEELKEQERWDDPMAQFLRKKKEKTDKKGK 102
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 40.4 bits (95), Expect = 7e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK+K R+ + ++ K KKK KKKRK K+ + K+ +K E++ + K+ K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 369 K 369
K
Sbjct: 65 K 65
Score = 38.9 bits (91), Expect = 0.002
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KKRK +++ + K+ K +KK +KK++ KR + K+ K +++ + K+ +K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Score = 38.1 bits (89), Expect = 0.004
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++RK R++ + K+ K K+K KKK++ KR + K+ RK ++ K+ KK
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 363 K 363
K
Sbjct: 65 K 65
Score = 37.7 bits (88), Expect = 0.005
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+L+++++ R+ + ++ K KK+ K+K+K K+ + K +K ++ R K
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60
Query: 356 KKKKK 360
KK K
Sbjct: 61 KKPGK 65
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
E KKRK ++ + K+ K KK+ ++K+K K+
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 28.9 bits (65), Expect = 3.6
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ ++ + +K+ KKK++ ++ ++ +K ++ R K+ KK K
Sbjct: 14 AVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGK 65
Score = 28.5 bits (64), Expect = 5.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ++ + KKK K+KRK ++ + K +K ++ + K+ KK K + K
Sbjct: 14 AVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKFYVPAEHK 73
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 40.9 bits (96), Expect = 8e-04
Identities = 18/80 (22%), Positives = 53/80 (66%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V+VD ++ + +++++K KR +++K+KE+++ ++ ++K+ +++R K+ K++
Sbjct: 53 VMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
+E+KK+ ++ K+ ++K
Sbjct: 113 AQEQKKQAEEAAKQAALKQK 132
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KKK + + K E +KK + KKK + KKK + K + + K +K
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Query: 369 KK 370
K
Sbjct: 244 AK 245
Score = 39.0 bits (91), Expect = 0.003
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++ K+K+ + K K K + + K+ KK + KK+ + E KK
Sbjct: 121 EEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180
Query: 361 KKKKKE 366
+ KK+
Sbjct: 181 AEAKKK 186
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K+ KK + K+K E K KKK + + KKK + K+K + K
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227
Query: 361 KKKKKEKRKK 370
K E +
Sbjct: 228 AKAAAEAKAA 237
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ E L + ++ER +++KK+ + K+ ++K+ + K K K + KR
Sbjct: 96 QAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Query: 351 KKEEKKKKKKKKKKKEK 367
KK + KKK +
Sbjct: 156 AAAAAKKAAAEAKKKAE 172
Score = 38.2 bits (89), Expect = 0.005
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ + KKK + + + E KKK + K+K + KK+ + K K +
Sbjct: 174 EAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAE 233
Query: 361 KKKKKEKRKK 370
K EK
Sbjct: 234 AKAAAEKAAA 243
Score = 37.5 bits (87), Expect = 0.008
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++ + K +KK + + KKK + KK+ K K + + +K
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Query: 362 KKKKEKRK 369
K EK
Sbjct: 244 AKAAEKAA 251
Score = 37.1 bits (86), Expect = 0.012
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKK---KRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
E +++ + KK + KK+ E E K + KKK + +KK + KK+ E K
Sbjct: 166 EAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKA 225
Query: 358 KKKKKKKKEKRK 369
K + K
Sbjct: 226 AAAKAAAEAKAA 237
Score = 37.1 bits (86), Expect = 0.012
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKK--RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K + K+K E +KK KKK + K K + + EK K +K
Sbjct: 192 AAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAA 251
Query: 367 KRKK 370
K
Sbjct: 252 AAKA 255
Score = 37.1 bits (86), Expect = 0.013
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++R ++ K++ + ++K+ +E K+ ++K+ + K K K + E K+
Sbjct: 100 QERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
Query: 361 KKKKKEKRKKR 371
KK + KK+
Sbjct: 160 AKKAAAEAKKK 170
Score = 36.7 bits (85), Expect = 0.014
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ K+ +K++ +++KK+ E+ K+ K+K+ ++ K K + + E K+
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158
Query: 361 KKKKKEKRKKR 371
KK K+
Sbjct: 159 AAKKAAAEAKK 169
Score = 36.3 bits (84), Expect = 0.020
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK------KRKKEE 354
EK +++KK+ + K+ K+K+ ++ K + K + + K K+ E
Sbjct: 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Query: 355 KKKK----KKKKKKKEKRKK 370
KKK KK E +KK
Sbjct: 167 AKKKAEAEAAKKAAAEAKKK 186
Score = 36.3 bits (84), Expect = 0.022
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KKK +KK + KKK + K K + + ++ K +K K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
Score = 35.2 bits (81), Expect = 0.047
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 310 KKKKRKRKRKKRKEKEKKKK-----KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KKK + + K+ E KKK K KK+ + + KKK + +KK + K
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA 226
Query: 365 KEKRKK 370
K
Sbjct: 227 AAKAAA 232
Score = 34.8 bits (80), Expect = 0.057
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
E +++ + KKK + KK+ E K K K +K K +K K
Sbjct: 198 EAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 33.6 bits (77), Expect = 0.13
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK-----KRKKKKRKKKKRKKEEKKKK 358
E KR K+ K+K + + KK + +KK K KKK + E KKK
Sbjct: 152 EAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKA 211
Query: 359 KKKKKKKEKRKK 370
+ KKK +
Sbjct: 212 AAEAKKKAAAEA 223
Score = 33.2 bits (76), Expect = 0.18
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK- 359
E + K K + + K+ KK KKK + + KK + K+K E + K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Query: 360 ----KKKKKKEKRKK 370
KKK + E +KK
Sbjct: 196 AAEAKKKAEAEAKKK 210
Score = 32.9 bits (75), Expect = 0.26
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ E ++K+ +++R ++ KE+ ++++K+ ++ K+ K+K+ ++ K
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAA 144
Query: 361 KKKKKEKRKKR 371
K K E KR
Sbjct: 145 AKAKAEAEAKR 155
Score = 32.1 bits (73), Expect = 0.42
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E +++ + KKK + K K + K +K + +K K E
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 32.1 bits (73), Expect = 0.44
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+KK + +K+ + K+K + K K + K +K + +K K E
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 31.7 bits (72), Expect = 0.55
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK- 359
KR KK +K+ + + +K + KKK + K + KK+ + E KKK
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212
Query: 360 ---KKKKKKEKRKK 370
KKK E +
Sbjct: 213 AEAKKKAAAEAKAA 226
Score = 30.5 bits (69), Expect = 1.3
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKK---RKKKKRKKKRKKKKRKKKKRKKEE 354
+K+ KKK + K+K E + K K +K K +K K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 37.2 bits (87), Expect = 0.001
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK----------KKRKKKKRKKKKRKKEE 354
R R K +KK +K +++ KK K KK+K K+ ++ ++KKRK+EE
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEE 60
Query: 355 KKKKKKKKKKKEKRKKR 371
+K+++K+ +K E+ + R
Sbjct: 61 EKERRKEARKAERAEAR 77
Score = 28.4 bits (64), Expect = 1.4
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKE---------KEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ E + R++ KK K KK+K+ KE+ ++ ++KKRK++ +K++RK+ +
Sbjct: 10 VAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKERRKEAR 69
Query: 350 RKKEEKKKKK 359
+ + + +K+
Sbjct: 70 KAERAEARKR 79
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
KK + K+K+ KE + + KKK + +KKK+KKK KK++ KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 36.9 bits (86), Expect = 0.008
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KK ++ K+K KE E + K+K +++ KKKK+KK +KK+ KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEE-KKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 33.0 bits (76), Expect = 0.16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
K++ K+ + + K+K +E+KKKK+KK +KKK KK K
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 32.7 bits (75), Expect = 0.22
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K ++ K+KE K+ + + KKK + +KKK+KK+ KKKK KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ + K R KKK + +K+K+K+K KK+K KK K
Sbjct: 158 KKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 30.0 bits (68), Expect = 1.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+++K + + + K+K +E++KKKKK+ KK+K K+ K
Sbjct: 156 LKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.6 bits (67), Expect = 1.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++++ K+ + R +KK E++KKK+KKK KKK+ KK +
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 2.6
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+K+E ++ + R +K+ E+EKKKKK+K K+KK +K K
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.0 bits (63), Expect = 6.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK ++ K+K+ K+ + +KK +++KKKKKK+ KK+
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKK 193
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ K K+ K+K+++ +E + + R +KKRK K + KK+K K+ K + KK K
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKG 279
Query: 364 KK 365
K
Sbjct: 280 MK 281
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKK--------KKRKKKRKKKKRKKKKRKKEEKK 356
++ K + K + KE KKKKR+ + +KKRK K+ KKK+ KE K
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKG 268
Query: 357 KKKKKKKKKEKRKK 370
K KK + KK
Sbjct: 269 VKALKKVVAKGMKK 282
Score = 38.1 bits (89), Expect = 0.005
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ L++ + + K K +KK++E E+ + + + KK++ K++ KKKK K+ +
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKG 268
Query: 356 KKKKKKKKKKEKRK 369
K KK K +K
Sbjct: 269 VKALKKVVAKGMKK 282
Score = 35.0 bits (81), Expect = 0.044
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
L KS+ + + + L K++++ ++ + R ++K K K++ K+KK K
Sbjct: 207 LYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKES 266
Query: 338 KKRKKKKRKKKKRKK 352
K K K+ K K
Sbjct: 267 KGVKALKKVVAKGMK 281
Score = 33.1 bits (76), Expect = 0.17
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ + + K +K K+ KKKKR+ + + + + KK + K++ KKKK KE +
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKG 268
Query: 370 KR 371
+
Sbjct: 269 VK 270
Score = 32.7 bits (75), Expect = 0.28
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
+ + +TE + R +K+K K + K+KK KE + K +K +
Sbjct: 221 KPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Query: 339 KR 340
K+
Sbjct: 281 KK 282
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 295 TEILIREK---RER-----KRRKKKKKRKRKR------KKRKEKEKKKKKRKKKKRKKKR 340
+ L++EK ER +R KK K +K + K+ KK + K K+KKK+
Sbjct: 309 KKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKK 368
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKK 365
K +E K KKK KK
Sbjct: 369 AGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 39.9 bits (93), Expect = 0.001
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K+ KK K+ + + K K KK KKK R K R K + K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 39.1 bits (91), Expect = 0.003
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ KK KK + K K K KK K+K + K + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 37.9 bits (88), Expect = 0.005
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E K+ K+ KK + K K + KK +KK + K + R K
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 37.6 bits (87), Expect = 0.006
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K +K KK + + K + KK +KK + K K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 36.8 bits (85), Expect = 0.013
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ ++ KK + + K K K+ KKK + K R K K ++
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 36.4 bits (84), Expect = 0.015
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ K+ K+ + K K K KK KKK R K + + K K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 35.6 bits (82), Expect = 0.027
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE KK K+ + + K K K+ KKK + K + K +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 34.9 bits (80), Expect = 0.058
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ KK KK + K K K KK KKK K + + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 32.5 bits (74), Expect = 0.29
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ +K K+ + K K + KK KKK + K + K K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 32.2 bits (73), Expect = 0.35
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ KK K+ + K + K +K K+K + + + K K ++
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 31.8 bits (72), Expect = 0.54
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
+K + + K K K+ +KK + K R K K
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 31.4 bits (71), Expect = 0.71
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K K+ +K + K K K KK +KK + K + K K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 29.1 bits (65), Expect = 3.7
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
I +++ ++ + K K K K+ K+ K + K R K K
Sbjct: 135 PPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKK--KGSVSNRSVKMPGIDPRSKPDWK 192
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
E+E + + + K KKKR+ K K +K K + + KK K K K
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 36.7 bits (85), Expect = 0.005
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
E +++ + K + K KKK+ K + ++EK K + KK K K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 35.5 bits (82), Expect = 0.015
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++ +++ + + + ++KKKR+ K K E++K K + KK K + K
Sbjct: 104 ESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 33.6 bits (77), Expect = 0.066
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ E K + ++KKKR+ K K +K+K K E KK K K K
Sbjct: 110 EQEDPPETKTESKEKKKREV--PKPKTEKEKPKTEPKKPKPSKPK 152
Score = 32.4 bits (74), Expect = 0.16
Identities = 10/56 (17%), Positives = 30/56 (53%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R+ ++E++ ++ + +++ + + + K KK+ + K K +K+K K + +
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 31.3 bits (71), Expect = 0.38
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ + K + K++K++E K K +K+K K + KK K K K
Sbjct: 112 EDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 31.3 bits (71), Expect = 0.41
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E+E+ +++ + ++ + K + K++KK E K K +K+K + K+
Sbjct: 97 EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Score = 30.9 bits (70), Expect = 0.48
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E+E +++ + +++ + K K+K+K+E K K +K+K K + KK
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 30.9 bits (70), Expect = 0.53
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ +++ + K +++KK++ K K K+K K + +K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 30.5 bits (69), Expect = 0.73
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + K + K+K+K++ K K +K+K K + +K + K K
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 29.7 bits (67), Expect = 1.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
++ E++ + K +++KKR+ + K +K K K KK K K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 27.4 bits (61), Expect = 7.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
+ E K E K +KK++ K K +K K K + KK + K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 38.7 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 300 REKRERKR-RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R++RER+R R + ++R R+R+ R + ++ + +R + R + +++ RK+E K
Sbjct: 21 RDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRERDKDA 80
Query: 359 KKKKKK 364
++ KK+
Sbjct: 81 REPKKR 86
Score = 36.4 bits (84), Expect = 0.008
Identities = 16/67 (23%), Positives = 39/67 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R +R R R + +R R ++ + + + +R+ +KR++ + ++ KK++R+K K++
Sbjct: 38 RRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDL 97
Query: 360 KKKKKKE 366
+ K +E
Sbjct: 98 EGKSDEE 104
Score = 35.2 bits (81), Expect = 0.019
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKR-----KKKKRKKKRKKKKRKKKKRKKEEK 355
RER RR++ + R R +R ++ + R +++ RK++R K R+ KKR++++
Sbjct: 32 RSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRERDKDAREPKKRERQKL 91
Query: 356 KKKKKKKKKKE 366
K++ + K +
Sbjct: 92 IKEEDLEGKSD 102
Score = 34.9 bits (80), Expect = 0.030
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
R R+R ++++ R R + + ++ R + + +R+ +KR++ K +E KK++++K
Sbjct: 32 RSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRERDKDAREPKKRERQKL 91
Query: 363 KKKEK 367
K+E
Sbjct: 92 IKEED 96
Score = 33.3 bits (76), Expect = 0.088
Identities = 17/77 (22%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK---------KKKRKK 352
+R R R + +++R+R+R + +E++++++ R + + +R + R+ +++ +K
Sbjct: 14 RRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRK 73
Query: 353 EEKKKKKKKKKKKEKRK 369
E+ K ++ KK+E++K
Sbjct: 74 RERDKDAREPKKRERQK 90
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/64 (31%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 306 KRRKKKKKRKRK----RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++K KKK + ++ RKE KRK+++RKK +++ K K+++ + EE+K+ +++
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Query: 362 KKKK 365
+K++
Sbjct: 61 RKQE 64
Score = 33.1 bits (76), Expect = 0.072
Identities = 14/47 (29%), Positives = 37/47 (78%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
++K+++RK+ +++ KEKE++++ ++K+ +++RK++ K+ K +KE
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKE 74
Score = 31.5 bits (72), Expect = 0.23
Identities = 15/53 (28%), Positives = 40/53 (75%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
KR+++RRKK ++ +++++ + E++K+ R+++K++ +++ K+RK+ + EE
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEE 81
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+KK K KKK K K K KKK K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.0 bits (83), Expect = 0.034
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK + KKK K K + KKK K K K+ KKR
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 35.6 bits (82), Expect = 0.044
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+KK K KK+ + K K KKK K K +K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 35.6 bits (82), Expect = 0.048
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
E+K + KKK K K K +KK K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 35.2 bits (81), Expect = 0.060
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++K K KKK K + + KKK K K KK +K+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 34.8 bits (80), Expect = 0.070
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
VI ++ + K + +K+ + +KK + K K KKK K K KK +K+
Sbjct: 726 SVIGNSIDAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.4 bits (79), Expect = 0.091
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++K K KKK K K + KK+ K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.0 bits (78), Expect = 0.14
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K+ K +KK K K K KKK K K KK K++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 33.6 bits (77), Expect = 0.19
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++K K +K+ K K K +KK + K K+ KKR
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.5 bits (74), Expect = 0.43
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
++K + +K+ K K K KK+ K K KK +K+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 32.1 bits (73), Expect = 0.56
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++K K KKK K K K KKK + K K+ +++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.2 bits (68), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+KK K KK+ K K K KKK K K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRK 309
E K ++ ++K +G I + ++++ + + +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITK-------EEIKEALESKKKTPEQIDQVLIFLSGMVKD 65
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ K+K K K K KKK K + KK +K+ K +
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 40.0 bits (94), Expect = 0.002
Identities = 17/67 (25%), Positives = 21/67 (31%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ E KKK K K K KKK K + KK KK K K
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
Query: 361 KKKKKEK 367
+ +
Sbjct: 128 NQADDDD 134
Score = 39.2 bits (92), Expect = 0.003
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + KK+ K K K KKK + + + KK +KK +K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Score = 38.8 bits (91), Expect = 0.004
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK+ + K K +KK + + KK KK K K+
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDI 124
Score = 38.8 bits (91), Expect = 0.004
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E + KKK K + K +KK K + + KK +KK +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 38.4 bits (90), Expect = 0.004
Identities = 14/70 (20%), Positives = 24/70 (34%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ ++ + KKK + + K + KKK K + K KK
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Query: 361 KKKKKEKRKK 370
K K + K
Sbjct: 95 KLKDELDSSK 104
Score = 38.4 bits (90), Expect = 0.005
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
E +++ + + K+ + + KK+ K K K KK+ K +
Sbjct: 41 ALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDEL 100
Query: 359 KKKKKKKEKRKK 370
KK ++K
Sbjct: 101 DSSKKAEKKNAL 112
Score = 38.4 bits (90), Expect = 0.006
Identities = 14/69 (20%), Positives = 24/69 (34%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + +KK ++ + K + K+K K K K KKK K
Sbjct: 39 KEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Query: 362 KKKKEKRKK 370
+ K+ +
Sbjct: 99 ELDSSKKAE 107
Score = 36.9 bits (86), Expect = 0.015
Identities = 14/59 (23%), Positives = 20/59 (33%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K+K K K K KKK + + K+ +KK K K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 35.7 bits (83), Expect = 0.032
Identities = 16/75 (21%), Positives = 24/75 (32%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
I E +E KKK + + K + +KK K K +
Sbjct: 33 ITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPA 92
Query: 357 KKKKKKKKKEKRKKR 371
KKK K + +K
Sbjct: 93 KKKLKDELDSSKKAE 107
Score = 34.6 bits (80), Expect = 0.079
Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK-----KKRKKKRKKKKRKKK 348
+ + +++ + + K ++ ++ + K+K ++ + K
Sbjct: 15 EAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDI 74
Query: 349 KRKKEEKKKKKKKKKKKEKRKK 370
+KK + K K K+K
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKL 96
Score = 34.6 bits (80), Expect = 0.088
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRK 317
+EA+E K+ + + L + D + + ++K + + K K
Sbjct: 39 KEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIP-----KKKTKTAAKAAAAKAPAK 93
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+K + E + KK KK K K +
Sbjct: 94 KKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Score = 32.7 bits (75), Expect = 0.34
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + + + KK+ KK K + K KEE K+ + KKK ++
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQID 53
Score = 31.1 bits (71), Expect = 0.93
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + +++ K+K KK K K K K+ KE + KKK ++ ++
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 30.7 bits (70), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ E ++ KKK KK K K K K+E K+ + KKK E+ +
Sbjct: 3 TASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 30.7 bits (70), Expect = 1.5
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK------KRKKKKRKKEEK 355
+ E K++ KK K K K KE+ K+ + KK+ ++ + K E
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATES 72
Query: 356 KKKKKKKKKKEKRKK 370
KKK K K
Sbjct: 73 DIPKKKTKTAAKAAA 87
Score = 30.0 bits (68), Expect = 2.0
Identities = 12/70 (17%), Positives = 27/70 (38%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ +++ K+K KK K K K K++ K+ + KK+ ++ +
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 362 KKKKEKRKKR 371
K + +
Sbjct: 64 KDTDDATESD 73
Score = 28.4 bits (64), Expect = 7.1
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + + K+K KK K K K K++ K+ K++ ++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Score = 28.4 bits (64), Expect = 7.9
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 310 KKKKRK--RKRKKRKEKEKKKKKRKKKKRKKKRKK--------------------KKRKK 347
KKK +K K K + K++ K + +KK ++ K
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPK 76
Query: 348 KKRKKEEKKKKKKKKKKKEKRKK 370
KK K K K KK+ + +
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDE 99
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEK-EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ +R R+ +K++++ K +E + K K K+ K R K+ K + R EE+ +
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE 301
Query: 359 KKKKKK 364
+ K
Sbjct: 302 EGKPLA 307
Score = 35.7 bits (83), Expect = 0.039
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ +R +E ++++K+ K+++ +R K K +K K + K+ +K + +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA 295
Score = 35.3 bits (82), Expect = 0.046
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKK-----KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++K +R R++ EK++K+ K ++ K K K+ K + K+ EK + + +++
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERP 299
Query: 366 EKRKK 370
+ K
Sbjct: 300 VEEGK 304
Score = 28.8 bits (65), Expect = 5.0
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK-EKRKKR 371
++K +R +++ K++K K+++ + K K KK + R KR
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKR 286
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 39.5 bits (93), Expect = 0.002
Identities = 18/79 (22%), Positives = 57/79 (72%), Gaps = 6/79 (7%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR------KKKKRKK 352
I+E+ E + ++K++K+K+ R++ E +++ +RK+++++++R+++ + +K +R++
Sbjct: 108 IQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREE 167
Query: 353 EEKKKKKKKKKKKEKRKKR 371
E + +++++K++KE+ R
Sbjct: 168 EREAERRERKEEKEREVAR 186
Score = 36.8 bits (86), Expect = 0.012
Identities = 26/130 (20%), Positives = 66/130 (50%), Gaps = 21/130 (16%)
Query: 251 REKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKK 310
R KAL E ER ++E L + I + E +E+ E + +++
Sbjct: 51 RLKALAEEEERERKRKEERREG------------RAVLQEQIEEREKRRQEEYEERLQER 98
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKK---------RKKKKRKKKKRKKEEKKKKKKK 361
++ + + ++E E + +++++K++K + R ++K ++K+R++EE+ K +
Sbjct: 99 EQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEY 158
Query: 362 KKKKEKRKKR 371
+++K +R++
Sbjct: 159 QREKAEREEE 168
Score = 34.9 bits (81), Expect = 0.049
Identities = 15/65 (23%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRK---KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ ERK +K+++R+ + K ++EK +++++R+ ++R++K +K++ + R ++E+
Sbjct: 134 NEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEE 193
Query: 356 KKKKK 360
+ ++
Sbjct: 194 AEDER 198
Score = 33.3 bits (77), Expect = 0.17
Identities = 16/94 (17%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRK---KRKEKEKKKKKRKKKKRKKKRKKK--- 343
++ E I EK ER + ++ ++ + + K+ E E+ +++ +K+R K+ + +
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 344 ------KRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K +++ ++EE+ ++ ++ +++E ++
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQA 327
Score = 31.4 bits (72), Expect = 0.66
Identities = 14/71 (19%), Positives = 51/71 (71%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+K + + K++++++ ++ R+E+ ++K++R +++R ++ +++R +K+ ++E+ +++
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 360 KKKKKKEKRKK 370
+K++ KR +
Sbjct: 278 NAEKRRMKRLE 288
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/72 (16%), Positives = 47/72 (65%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+EK E ++R+++K+ ++ ++ + +EK+++ ++++ ++ +++ +K+ +E +++
Sbjct: 220 KEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENA 279
Query: 360 KKKKKKEKRKKR 371
+K++ K +R
Sbjct: 280 EKRRMKRLEHRR 291
Score = 29.5 bits (67), Expect = 2.6
Identities = 14/75 (18%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR---KKKRKKKKRKKKKRKKEEKK 356
RE+ R+++K+ K + R ++++ + ++++ + +++ ++K+R+KE+++
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEE 224
Query: 357 KKKKKKKKKEKRKKR 371
+K++++K+E ++ R
Sbjct: 225 AEKRRRQKQELQRAR 239
Score = 29.1 bits (66), Expect = 4.0
Identities = 11/68 (16%), Positives = 43/68 (63%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E E++R K+ + R+ ++ +EKE+++ ++++ ++ + ++ + +++ + E+++++
Sbjct: 276 QENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQR 335
Query: 360 KKKKKKEK 367
K+ E
Sbjct: 336 LLKEHAEA 343
Score = 28.3 bits (64), Expect = 6.7
Identities = 26/142 (18%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 248 QMRREKALKRREAMERAKREGSIVS-FHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
Q +REK K RE ++ E R+ K ++ + E +R +
Sbjct: 117 QEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRER 176
Query: 307 RRKKKKKRKRKRKKRKEKEKKK-----------------KKRKKKKRKKKRKKKKRKKKK 349
+ +K+++ R R +++E E ++ K+R+K+K + +++++++++ +
Sbjct: 177 KEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQ 236
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
R +EE+ ++K+++ ++E+ ++
Sbjct: 237 RAREEQIEEKEERLQEERAEEE 258
Score = 28.3 bits (64), Expect = 7.4
Identities = 12/53 (22%), Positives = 39/53 (73%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+R + ++KK+ K ++++++R+ + +++R K +++++++K+KE+R++
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 28.0 bits (63), Expect = 8.0
Identities = 14/74 (18%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKK--KRKKKKRKKKRKKKKRKKKKRKKEEKK 356
I EK+ K +K+++R+ +E+ K + +++KRK++R++ + +++ +E +K
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREK 85
Query: 357 KKKKKKKKKEKRKK 370
+++++ +++ + ++
Sbjct: 86 RRQEEYEERLQERE 99
Score = 28.0 bits (63), Expect = 8.3
Identities = 14/120 (11%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 251 REKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKK 310
+E+A KRR + +R + + + E ++ ++ E + ++
Sbjct: 222 KEEAEKRRRQKQELQRA-----REEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ KR+ K+ + + + +++ ++K+ ++ ++++ ++ + E++ +++ + ++E+++
Sbjct: 277 ENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQRL 336
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 40.3 bits (94), Expect = 0.002
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
REKR++K R KK + + + ++ K ++ K K++ KK + ++K E +++
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 360 KKKKKKEKRKKR 371
K +
Sbjct: 227 LLYLDYLKLNEE 238
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
+ + E + ++ K + LRD + + E I + ++
Sbjct: 216 LKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK-EEEILAQVLKE 274
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++++K++K + ++ K K++++ K + K +R+K ++K ++ E++ KK +K+ KKE
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 367 KRKK 370
K +
Sbjct: 335 KEEI 338
Score = 37.6 bits (87), Expect = 0.012
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + E + K++ + K + K + +K +K K +K KK K+ K++KEE ++
Sbjct: 282 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEEL 341
Query: 359 KKKKKKKEKRK 369
+K+ K+ E ++
Sbjct: 342 EKELKELEIKR 352
Score = 37.3 bits (86), Expect = 0.013
Identities = 19/78 (24%), Positives = 47/78 (60%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ +I +E+ E K R KK++ + ++ + KEK+ + ++K K K +++K +K K ++E
Sbjct: 743 EQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEE 802
Query: 354 EKKKKKKKKKKKEKRKKR 371
E + +++ K++ + +
Sbjct: 803 ELRALEEELKEEAELLEE 820
Score = 36.1 bits (83), Expect = 0.037
Identities = 9/76 (11%), Positives = 33/76 (43%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++ K + K+ + + K K + +E K + + ++ + ++ + E
Sbjct: 198 LQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESS 257
Query: 356 KKKKKKKKKKEKRKKR 371
K++ +K+++ + +
Sbjct: 258 KQELEKEEEILAQVLK 273
Score = 35.7 bits (82), Expect = 0.041
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKR------KRKRKKRKEKEKKKKKRKKKKRKK 338
+ + E + E K ++K K K + KK +E+E+K + K+K
Sbjct: 719 EKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELA 778
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++K K K +++E+K K ++++ + ++
Sbjct: 779 EEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811
Score = 34.9 bits (80), Expect = 0.075
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 299 IREKRERKRRK--KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ E+ E ++ K + K KE+ KK + + K K + +++ K ++
Sbjct: 179 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEE 238
Query: 357 KKKKKKKKKEKRKKR 371
+ ++ ++
Sbjct: 239 RIDLLQELLRDEQEE 253
Score = 34.6 bits (79), Expect = 0.093
Identities = 11/76 (14%), Positives = 43/76 (56%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E + E+ E+ + K ++ K ++ K +E+E + + + K+ + ++++ ++ +K ++
Sbjct: 774 EKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 833
Query: 356 KKKKKKKKKKEKRKKR 371
++ ++ + ++ +K
Sbjct: 834 EELEELALELKEEQKL 849
Score = 34.6 bits (79), Expect = 0.11
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L +E+ E K K +R++ + K KE +K+ +K +K KK K++ + +K KE + K
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351
Query: 358 KKKKKKKKEKRKKR 371
++ +++++E+ +K
Sbjct: 352 REAEEEEEEQLEKL 365
Score = 33.4 bits (76), Expect = 0.23
Identities = 19/125 (15%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
+ E++ K E+ ++ + L ++ +L+ D + + +E
Sbjct: 900 KKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKE-- 957
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+++++ KR ++E + +K+ + K + KK + EE+KK+ ++ +E
Sbjct: 958 --EEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEE 1015
Query: 367 KRKKR 371
++
Sbjct: 1016 TCQRF 1020
Score = 31.1 bits (70), Expect = 1.3
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
LI + E K ++ K K + KK E + K+K + ++ + ++R +
Sbjct: 187 AELIIDLEELKL--QELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQ 244
Query: 356 KKKKKKKKKKEKRKKR 371
+ + ++++ E K+
Sbjct: 245 ELLRDEQEEIESSKQE 260
Score = 29.9 bits (67), Expect = 2.5
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ + + ++K +R K +KE+ ++++K+ R+ + +R K+ +
Sbjct: 970 KEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVS 1029
Query: 356 KKKKKKKK 363
+ K
Sbjct: 1030 INRGLNKV 1037
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 40.0 bits (94), Expect = 0.002
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+K+K++++ + E E K K K K + + K R
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 33.8 bits (78), Expect = 0.14
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K + K EK+KK+++ K + K K ++ K+ +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 364 KKEKRKK 370
+
Sbjct: 805 AADPDAV 811
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK----------------KKRKKKK 349
K+R+++ + KRKR++ +EK K ++++++ K K KK KK++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 350 RKKEEKKKKKKKKKKKEKRK 369
+KKE ++KK +KEK +
Sbjct: 103 KKKEAERKKALLLDEKEKER 122
Score = 39.0 bits (91), Expect = 0.003
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR---------------KKKRKKKKRKK 347
E + ++K+++ + K K +EK ++ K K KK +K++K+K+
Sbjct: 47 EEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKE 106
Query: 348 KKRKKEEKKKKKKKKKKKEKR 368
+RKK +K+K++ E
Sbjct: 107 AERKKALLLDEKEKERAAEYT 127
Score = 37.0 bits (86), Expect = 0.015
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 16/78 (20%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK----------------KKKRKKE 353
KK++ + + K+++E+ ++K + ++KR++ K K KK +K++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 354 EKKKKKKKKKKKEKRKKR 371
+KK+ ++KK K++
Sbjct: 103 KKKEAERKKALLLDEKEK 120
Score = 35.9 bits (83), Expect = 0.030
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR----------------KKKK 344
E ++++ + + KRKR+ + K + ++K+ + K + KK K
Sbjct: 40 ENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSK 99
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKRKK 370
+++KK++ E KK +K+KE+ +
Sbjct: 100 KRQKKKEAERKKALLLDEKEKERAAE 125
Score = 35.1 bits (81), Expect = 0.066
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 25/91 (27%)
Query: 305 RKRRKKKKKRKRKRKKRKEKE----------KKKKKRKKKKRKKKRKKKKRKKKKRKKE- 353
+K +KKKKK+K++RK E E RK + + R + KK+K ++E
Sbjct: 276 KKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQED 335
Query: 354 --------------EKKKKKKKKKKKEKRKK 370
K+++ +KK+K+ R +
Sbjct: 336 DDFVEDDDDLQASLAKQRRLAQKKRKKLRPE 366
Score = 33.6 bits (77), Expect = 0.19
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRK--------------EKEKKKKKRKKKKRKKK 339
D+ ++ E+KR++ KKK K + K KK KKKK+KKK
Sbjct: 227 DSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKK 286
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+++K + + + E + ++ ++
Sbjct: 287 KRRKDLDEDELEPEAEGLGSSDSGSRKDVEE 317
Score = 32.0 bits (73), Expect = 0.52
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 42/127 (33%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRK------RKRKKRK-------EKEKKKKKR-- 331
D D + + E++ +EK ++ KKKK K KR E E KKKK
Sbjct: 163 DEGDELENVELVEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDN 222
Query: 332 -----KKKKRKKKRKKKKRKKKKRKK----------------------EEKKKKKKKKKK 364
+ +KK+++ KK+ K E K KK KKKK
Sbjct: 223 LFTLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKK 282
Query: 365 KEKRKKR 371
K+K+K+R
Sbjct: 283 KKKKKRR 289
Score = 29.3 bits (66), Expect = 3.6
Identities = 9/48 (18%), Positives = 27/48 (56%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++ + KK++++ K+KR++ + K + ++K+++ K K
Sbjct: 32 ESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIK 79
Score = 28.2 bits (63), Expect = 9.1
Identities = 14/74 (18%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKEEKK 356
L++ + K+ + +++R+ K+++ + + R++ +R++ R K + R++EE
Sbjct: 481 LLKSRGILKKNQLERERREFLKEKERLKLLAEIRERIERERDRNDGKYSRMSAREREEYA 540
Query: 357 KKKKKKKKKEKRKK 370
+ + ++ KE+ K
Sbjct: 541 RPENDQRDKEEAYK 554
Score = 28.2 bits (63), Expect = 9.4
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 32/112 (28%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKE-----KKKKKRKKKKRKKKRKKKKRK 346
I+ L RE+RE + K++ K + ++R E+E K + ++R++ + + +
Sbjct: 487 ILKKNQLERERREFLKEKERLKLLAEIRERIERERDRNDGKYSRMSAREREEYARPENDQ 546
Query: 347 KKKRK--------------------KEEKKK-------KKKKKKKKEKRKKR 371
+ K + KE K K K K EKR K+
Sbjct: 547 RDKEEAYKPDVKLKYVDEFGRELTPKEAFKYLSHKFHGKGSGKMKTEKRLKK 598
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 38.2 bits (88), Expect = 0.002
Identities = 18/72 (25%), Positives = 55/72 (76%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE+ E+ R ++++ ++R ++R +E++ +++++++ ++K +K KRK ++ +K+E+++++
Sbjct: 47 REQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQE 106
Query: 360 KKKKKKEKRKKR 371
+ +K+KE+ + R
Sbjct: 107 RIQKQKEEAEAR 118
Score = 37.8 bits (87), Expect = 0.003
Identities = 13/72 (18%), Positives = 57/72 (79%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE+ E++RR+++++ + +R++ K + +++ R++++ +++ +++ R+K+++ K + ++++
Sbjct: 39 REQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEE 98
Query: 360 KKKKKKEKRKKR 371
K+++++++R ++
Sbjct: 99 KQEQEEQERIQK 110
Score = 35.8 bits (82), Expect = 0.015
Identities = 18/78 (23%), Positives = 55/78 (70%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
D E R E++R+ ++++ + ++++R+++E+ + +R++ KR+ ++ +R+++ R++E
Sbjct: 20 DAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQE 79
Query: 354 EKKKKKKKKKKKEKRKKR 371
E++ ++K++K K K ++
Sbjct: 80 EERAREKEEKAKRKAEEE 97
Score = 34.7 bits (79), Expect = 0.030
Identities = 16/76 (21%), Positives = 56/76 (73%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E +E+++R R++ K+R + + R+E+E ++++ ++ + K+++ K+K ++++++++E+
Sbjct: 45 ERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEE 104
Query: 356 KKKKKKKKKKEKRKKR 371
+++ +K+K++ + + R
Sbjct: 105 QERIQKQKEEAEARAR 120
Score = 34.7 bits (79), Expect = 0.039
Identities = 17/74 (22%), Positives = 52/74 (70%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ R ER RR+++ +R+ + + R+++EK K+K ++++++++ ++++ +K+K + E +
Sbjct: 59 ELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEAR 118
Query: 356 KKKKKKKKKKEKRK 369
+++ ++ + E+ K
Sbjct: 119 AREEAERMRLEREK 132
Score = 33.1 bits (75), Expect = 0.12
Identities = 15/74 (20%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L+ EKR R+ R+++++ +++R++++E+++ +++ K++ ++R +++ + +++++E ++
Sbjct: 27 LLAEKR-RQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERARE 85
Query: 358 KKKKKKKKEKRKKR 371
K++K K+K + +++
Sbjct: 86 KEEKAKRKAEEEEK 99
Score = 32.8 bits (74), Expect = 0.15
Identities = 15/72 (20%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 300 REKRERKRRKKKKKR-KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R+ RE++ ++++++R + ++ + + +E K++ +++ R+++ +++ +++ R+KEEK K+
Sbjct: 33 RQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKR 92
Query: 359 KKKKKKKEKRKK 370
K ++++K+++++
Sbjct: 93 KAEEEEKQEQEE 104
Score = 28.9 bits (64), Expect = 2.8
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRK 309
+ LKRR A ER +RE R+ K+ E ++++E + R
Sbjct: 55 LEREELKRRAAEERLRREEEARRQEEERAREKEEKAKR------KAEEEEKQEQEEQERI 108
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK------KKRKKEEKKKKKKKKK 363
+K+K + + + R+E E+ + +R+K ++ ++++ +RKK K+ +K E + KK+
Sbjct: 109 QKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEIMKRTRKSEVSPQVKKED 168
Query: 364 KKE 366
K
Sbjct: 169 PKV 171
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
LI E R+ ++K + KE EK K++ ++KK K +++ K + E++
Sbjct: 519 NELI-ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK---LQEEEDKLLEEAEKE 574
Query: 356 KKKKKKKKKKE 366
++ K+ KKE
Sbjct: 575 AQQAIKEAKKE 585
Score = 37.1 bits (87), Expect = 0.016
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 240 LGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILI 299
L ++I S + + ++ E E +E L++ + + + D +
Sbjct: 518 LNELIASLEELERELEQKAEEAEALLKE-------AEKLKEELEEKKEKLQEEEDKLLEE 570
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
EK ++ K+ KK + K + +K K + +K+ K KKE+KKKK+
Sbjct: 571 AEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQ 630
Query: 360 KKKKKKEK 367
K+K+++ K
Sbjct: 631 KEKQEELK 638
Score = 35.2 bits (82), Expect = 0.054
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ +K +E E K+ +K K + + KK+K ++++ K E+ +K+ ++ KE +K
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
Score = 35.2 bits (82), Expect = 0.054
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKK----------------------RK 332
E L++E + K ++KK K + ++ K E+ +K+ +K
Sbjct: 539 AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQK 598
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + +K+ K +KK+KKKKK+KEK+++
Sbjct: 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 34.4 bits (80), Expect = 0.092
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+E E+K ++ + ++ ++ K++ ++KK K +E++ K ++ +KE ++
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
Score = 31.7 bits (73), Expect = 0.77
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++I E L + E+K + + K K ++E E+KK+K ++++ K + +K ++
Sbjct: 520 ELIASLEEL-ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
Query: 350 RK--KEEKKKKKKKKKKKEKRKKR 371
K K+E + K+ ++ +K
Sbjct: 579 IKEAKKEADEIIKELRQLQKGGYA 602
Score = 30.6 bits (70), Expect = 1.7
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 44/111 (39%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK--------------- 347
+E ++ +K K + E K+ K +KK KKK+K+K++++
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQ 650
Query: 348 -----------------------------KKRKKEEKKKKKKKKKKKEKRK 369
+K +K +KKKKKK K K K +
Sbjct: 651 KGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPR 701
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK+ + KR +KK K RK K K K+KK K KR
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 34.2 bits (79), Expect = 0.036
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+ K+ RKK K ++ + K+++KK K K+ E
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASE 46
Score = 33.8 bits (78), Expect = 0.051
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+K+ + K+ +KK K RK K ++K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 33.8 bits (78), Expect = 0.052
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
RK+ ++ +K+ K +K K K K+K+ K KR
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 33.8 bits (78), Expect = 0.059
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+KR KR K+ K RK K K K+KK K K+ E
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 33.5 bits (77), Expect = 0.072
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+KR E K+ ++K K +K K K K++K + K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+KR + K+ RKK + +K + K K+KK K K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 31.5 bits (72), Expect = 0.36
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 310 KKKKRKRK----RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
RKR ++ RK+ K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
RKR + K +KK K ++ K K ++KK + K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
E + +++ K RK K K+K+KK K ++
Sbjct: 11 EPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK-----KKKKKKKKEK 367
+ R K+K KEK ++ K + + + +++EEK KKKK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 39.2 bits (91), Expect = 0.003
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + K+K K K +KE K + + ++ K+R++K KKKK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 33.4 bits (76), Expect = 0.23
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K R K+K K+K K K + E + ++ K++E++
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK 833
Score = 30.3 bits (68), Expect = 2.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ R K+K K+K +E K + + + +R
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCT 826
Score = 29.1 bits (65), Expect = 4.6
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K+K K K K+ K + + + ++ K++ +K
Sbjct: 792 KAAARA-KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK 833
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 36.1 bits (84), Expect = 0.002
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KKRKR K R ++ KK+ +K ++KK++ KR +K K+ ++ + + K+E +K
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKK 61
Query: 370 K 370
K
Sbjct: 62 K 62
Score = 32.2 bits (74), Expect = 0.050
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 319 KKRKEKEKKKKKRKKKKRK-KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KKRK EK + KR KK+ K +KKKRK ++ E+ K+ + ++ E R KR
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKR 57
Score = 31.8 bits (73), Expect = 0.066
Identities = 18/59 (30%), Positives = 39/59 (66%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K+RK+ +K + KR K++ +K +K+K+K K+ +K ++ + +++E + K++ KKK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 31.4 bits (72), Expect = 0.093
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK+K+ ++ R KR +K KK +KKKRK K+ ++ K+ + E+ + + K++ K+K
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 30.7 bits (70), Expect = 0.17
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R++ E+ R K+ KKR K+ RK+K K KR +K K+ R ++ + + +++ +KK
Sbjct: 6 RKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 29.5 bits (67), Expect = 0.53
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
RKR +K + ++ K++ K+ +KKK++ KR +K K+ R ++ + K++ KKK
Sbjct: 6 RKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 26.4 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
KKRK+ EK + K+ KK+ K+ R
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAAR 27
Score = 25.7 bits (57), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K++K+ K K+ KK+ KK ++KKR
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKR 31
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.2 bits (92), Expect = 0.003
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++++ ++ K ++ KK +E EK K K K KK KK + K KK
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKK 159
Query: 359 KKKKKKKEKRKKR 371
K+K ++ K
Sbjct: 160 NFKEKLLKELKSV 172
Score = 36.5 bits (85), Expect = 0.021
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+++++ I + + +++ E+ + + + K++ + K K K K KK KK
Sbjct: 89 ENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNL 148
Query: 344 KRKKKKRKKEEKKKKKKKKKKKEK 367
K ++ K+K K+ K
Sbjct: 149 SEALKGLNYKKNFKEKLLKELKSV 172
Score = 35.4 bits (82), Expect = 0.050
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 273 FHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRK------EKEK 326
+ L + D+I LIRE E+ KK+K K K+K +++
Sbjct: 351 STSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKLWLHLVAELKEDI 410
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+++KK +K +++ K+ + E K +K+ K+ +++
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLT 453
Score = 35.4 bits (82), Expect = 0.051
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ + + + ++ K++ KK +++ ++ + KK++ +K + K K KK KK +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Score = 34.6 bits (80), Expect = 0.079
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ + +E +K+ KK ++K + + + +K++++ K + K K KK +K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Score = 33.8 bits (78), Expect = 0.15
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+E + + + ++ KK+ KK + K ++ + E +KK+++ +K K K +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 33.4 bits (77), Expect = 0.18
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKE-KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ EK E+ + +KK + K + + +K KK KK + K K+ +EK
Sbjct: 107 LEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLL 166
Query: 358 KKKKKKKKEK 367
K+ K
Sbjct: 167 KELKSVILNA 176
Score = 31.9 bits (73), Expect = 0.61
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E + + KK+ K+ +K ++ E + +K K++ +K K K K KK KK +
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEK--KEEELEK-AKNKFLDKAWKKLAKKYDSNLSE 150
Query: 364 KKEKRKKR 371
+ +
Sbjct: 151 ALKGLNYK 158
Score = 29.2 bits (66), Expect = 4.5
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKK------KKRKKKKRKKKRKKKKRKKKKRKK-- 352
EK+E + K K K K K+ K+ K KK K++ K+ K
Sbjct: 119 EKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASS 178
Query: 353 --EEKKKKKKKKKKKEKRKKR 371
++ K K K K
Sbjct: 179 LLSLEELKAKIKTLFSSNKPE 199
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 39.6 bits (92), Expect = 0.003
Identities = 24/65 (36%), Positives = 29/65 (44%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R KKK +K +K KK +K +KK KK KK RK KK KK +K
Sbjct: 988 TRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
Query: 366 EKRKK 370
RK
Sbjct: 1048 AGRKA 1052
Score = 38.8 bits (90), Expect = 0.005
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKK--RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+R+ R +K R +KK +K KK +K +K KKK KK KK +K
Sbjct: 974 VRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARK 1033
Query: 357 KKKKKKKKKEKRKK 370
KK KK RK
Sbjct: 1034 PAAKKAAKKPARKA 1047
Score = 37.7 bits (87), Expect = 0.010
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R ++K KK K+ K+ KK KKK KK KK +K KK KK +K
Sbjct: 988 TRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
Query: 362 KKKK 365
+K
Sbjct: 1048 AGRK 1051
Score = 37.7 bits (87), Expect = 0.010
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK--KRKKKKRKKEEKKKKKKKK 362
+ +K +R K+ KKK KK KK KK +K +KK KK KK
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKV 1030
Query: 363 KKKEKRKK 370
+K KK
Sbjct: 1031 ARKPAAKK 1038
Score = 34.6 bits (79), Expect = 0.084
Identities = 24/69 (34%), Positives = 31/69 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ R KK+ K+ K+ KK KK KKK KK KK +K KK KK
Sbjct: 983 KKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKK 1042
Query: 362 KKKKEKRKK 370
+K +K
Sbjct: 1043 PARKAAGRK 1051
Score = 33.0 bits (75), Expect = 0.30
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+K KK +K KK K+ KK+ KK K+ +K KK K+ +K +K
Sbjct: 994 KKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 30.0 bits (67), Expect = 2.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K++ ++ KK K+ K+ KKK KK KK +K KK +K K +
Sbjct: 991 AMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGR 1050
Query: 360 KK 361
K
Sbjct: 1051 KA 1052
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++ KRR + ++ ++ +++K++EK++ K+ + K E K+K++K
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQK 224
Query: 362 KKKKEKR 368
E+R
Sbjct: 225 HHDPERR 231
Score = 37.9 bits (88), Expect = 0.005
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E ++R K+K KR+ + ++ ++ ++K++++KR+ K+ + K +
Sbjct: 158 EHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEP 217
Query: 364 KKEKRKK 370
KEKR+K
Sbjct: 218 PKEKRQK 224
Score = 34.5 bits (79), Expect = 0.061
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK-----RKKKKRKKEEK 355
E R+R ++K+K+R +K KE +KK++ K++ + KR + K+E
Sbjct: 158 EHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEP 217
Query: 356 KKKKKKKKKKEKRK 369
K+K++K +R+
Sbjct: 218 PKEKRQKHHDPERR 231
Score = 32.9 bits (75), Expect = 0.20
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
EKE + RKK + +++ K+K+K+R ++ +K K+ ++KK+E+++
Sbjct: 144 EKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
Score = 32.1 bits (73), Expect = 0.35
Identities = 9/67 (13%), Positives = 37/67 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++K +++ + ++ ++ R++K+++K++ + KR + +++ K+K++K
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQK 224
Query: 364 KKEKRKK 370
+ ++
Sbjct: 225 HHDPERR 231
Score = 31.0 bits (70), Expect = 0.72
Identities = 15/57 (26%), Positives = 36/57 (63%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ R RKK ++ +K+ ++K+KR+ + +K ++ +++K+EEK++ + K+
Sbjct: 145 KECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Score = 29.1 bits (65), Expect = 3.7
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EK+ + +KK + +K+ K+K++++ E +K K+ ++K++ +KR
Sbjct: 144 EKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 39.5 bits (92), Expect = 0.003
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
DA K +D +D D + + R++ ++ R +K + KK KK KK
Sbjct: 1159 DALEKELDKLD-KEDAK----AEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Query: 340 R------------------------KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K R K+K K+K+++ + K R
Sbjct: 1214 ASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDR 1269
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 39.3 bits (92), Expect = 0.003
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKK-----------KKKRKKKKRKKKRKKKKRKKKK 349
E E + +K + KR ++ +KE++ K K KK+ KK+ K
Sbjct: 460 EDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSK 519
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
K K K K K+K+KK
Sbjct: 520 LDKAANKISKAAVKVKKKKKK 540
Score = 35.0 bits (81), Expect = 0.059
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK----KEKRKK 370
KKRKKKRK+K+R K + +K+K+K KK K EKR K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNK 667
Score = 33.1 bits (76), Expect = 0.24
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K+++ +KK + K K K + KKK+KKE+ +E
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDS 556
Query: 369 KK 370
K
Sbjct: 557 IK 558
Score = 33.1 bits (76), Expect = 0.29
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E E +R + ++ + + + +K +RK +++ + +K KK K E K+KK
Sbjct: 392 AEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKK 451
Query: 360 KKKKKKEKRKK 370
+ +++E +
Sbjct: 452 ESDEEEELEDE 462
Score = 32.7 bits (75), Expect = 0.30
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-----KKRKKKKRK 351
KKRK+KRK+++ K + KK+KRK K+ K +KR KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKKAAK 671
Score = 32.7 bits (75), Expect = 0.36
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 294 DTEILIREKRERKRRKKK----KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ E K+ RRK +K +K +KE + + K++K+ +++ + ++ K +
Sbjct: 409 EEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVE 468
Query: 350 RKKEEKKKKKKKKKKKEK 367
+ + K+ +K +K+E+
Sbjct: 469 KVANKLLKRSEKAQKEEE 486
Score = 32.3 bits (74), Expect = 0.41
Identities = 14/70 (20%), Positives = 39/70 (55%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E R+++ + + R+ + +E+ +++ + K+ R+K + +++ E KK KK+
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKE 442
Query: 361 KKKKKEKRKK 370
K + +++K+
Sbjct: 443 NKNEFKEKKE 452
Score = 31.6 bits (72), Expect = 0.74
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
RKK++ + R+E E +++ +++ + +K R+K + EK+ + KK KK+ K
Sbjct: 385 RKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENK 444
Query: 368 RKKR 371
+ +
Sbjct: 445 NEFK 448
Score = 31.2 bits (71), Expect = 0.98
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K + KK+ K+K K K K + K KKKK+K++
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK-KKKRKKEEKKKK 358
E+ + KK R++ + EKE + KK KK+ + + ++KK+ +++ + EE+ K
Sbjct: 408 DEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKV 467
Query: 359 KKKKKKKEKRKKR 371
+K K KR ++
Sbjct: 468 EKVANKLLKRSEK 480
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ R+ + RK +E ++ K KR KK K KK + +K++ K++ K
Sbjct: 200 KARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELK 245
Score = 30.0 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK----EEKKKKK 359
K+++KK+K++++ K + KK+++K K+ K EK+ KK
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKK 668
Score = 30.0 bits (68), Expect = 2.5
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
L K KK+ +K+ K + K K K +KKK+K+K
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 29.6 bits (67), Expect = 3.3
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+KK++K+KR+ K + KK+K+K+K+ K
Sbjct: 628 KRKKKRKRKRRFLTKIEGVKKEKRKDKKLKN 658
Score = 29.6 bits (67), Expect = 3.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK-KRKKKRK-KKKRKKKKRKKE 353
E L +K + K ++ RK ++ +E+ K KR KK K KK + KK K K+ KE
Sbjct: 187 EELELKKLSPEEAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKE 246
Query: 354 E 354
Sbjct: 247 F 247
Score = 28.1 bits (63), Expect = 9.2
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 305 RKRRKKKKK------RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ RR + +K R+ + KR +K K KK + K++K +++ K ++ K + +
Sbjct: 200 KARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKEFEELVKADPEAAL 259
Query: 359 KKKKKKKEKR 368
++ +K + +R
Sbjct: 260 EELEKLERRR 269
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/74 (18%), Positives = 41/74 (55%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L++ + RK+ + + R R + ++E E+K+++ ++ KR +++ + E+++
Sbjct: 61 LLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRA 120
Query: 358 KKKKKKKKEKRKKR 371
+ +K + E ++ R
Sbjct: 121 SQLEKLQDEIKRTR 134
Score = 32.0 bits (73), Expect = 0.41
Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
IR + + + + ++KR+R + + ++R + +K+R + K +++ K
Sbjct: 75 QIRARISQLKEEIEQKRERIEELK---RALAQRRSDLSSASYQLEKRRASQLEKLQDEIK 131
Query: 358 KKKKK 362
+ + K
Sbjct: 132 RTRSK 136
Score = 28.9 bits (65), Expect = 4.5
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 295 TEILIREKRERKRRKK-KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK-K 352
E L E + K + RKK + + + + + K + ++K+++ ++ KR
Sbjct: 44 EEALEGATNEDGKLAADLLKLEVARKKER-LNQIRARISQLKEEIEQKRERIEELKRALA 102
Query: 353 EEKKKKKKKKKKKEKRKKR 371
+ + + EKR+
Sbjct: 103 QRRSDLSSASYQLEKRRAS 121
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 39.0 bits (91), Expect = 0.004
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 3/76 (3%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRK---EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
R E + + +K K K+ + K K E +
Sbjct: 417 TRPGLEEESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELE 476
Query: 356 KKKKKKKKKKEKRKKR 371
++ E K
Sbjct: 477 RRSPNSADDIEYILKG 492
Score = 35.2 bits (81), Expect = 0.053
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 263 RAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIRE--KRERKRRKKKKKRKRKRKK 320
RA R+G +SF V + K + + E + K K + ++
Sbjct: 366 RAGRKGVAISF--VTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEE 423
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRK------KKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + KK K K+ R R K+ + +R+
Sbjct: 424 ESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSP 480
Score = 34.8 bits (80), Expect = 0.077
Identities = 4/67 (5%), Positives = 18/67 (26%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K ++ + + +++ + K + E++ K +
Sbjct: 446 GVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSADDIEYILKGLSYRAEERTAKNE 505
Query: 362 KKKKEKR 368
+ +
Sbjct: 506 AANIKLQ 512
Score = 28.2 bits (63), Expect = 8.8
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
+ +K+ ++ ++A G V F L K + + I + ER+
Sbjct: 423 EESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIP----GAGDAVTIDPELERR 478
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
+ K + +++ + + K +
Sbjct: 479 SPNSADDIEYILKGLSYRAEERTAKNEAANIKLQ 512
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 38.5 bits (89), Expect = 0.005
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRK--------------KKKRKKKRKKKKRKKKKRKKEE 354
KKK R KR +K + + + K+ +K R+ +++ E
Sbjct: 70 KKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVE 129
Query: 355 KKKKKKKKKKKEKRKK 370
++K +KK +K+ K KK
Sbjct: 130 EEKTEKKVRKRRKVKK 145
Score = 38.5 bits (89), Expect = 0.005
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEK---------------EKKKKKRKKKKRKKKRKKKKR 345
+++ R K+ K+ + E +K+ KK ++ R+K
Sbjct: 68 VSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSD 127
Query: 346 KKKKRKKEEKKKKKKKKKKKE 366
++++ +++ +K++K KK E
Sbjct: 128 VEEEKTEKKVRKRRKVKKMDE 148
Score = 35.8 bits (82), Expect = 0.033
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+E+++ E + KK R+ +RK ++++ +KK +K+RK KK
Sbjct: 96 SELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 35.8 bits (82), Expect = 0.039
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K+ K+ +R +RK ++K KK RK++K KK E+
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVED 152
Score = 35.8 bits (82), Expect = 0.039
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ +++V+ + + ++ ++ R+ ++K +E++ +KK RK++K KK
Sbjct: 94 EGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146
Score = 28.5 bits (63), Expect = 7.0
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE-------EKKKKK 359
RKK + ++ E KK+ + K+ KK + + +E E
Sbjct: 48 SRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALD 107
Query: 360 KKKKKKEKRKKR 371
K+ KK +R +R
Sbjct: 108 KESKKTPRRTRR 119
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 35.9 bits (83), Expect = 0.005
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+KK ++ KR KK++KKKKR K + K KK +KK++KK + + ++ KR
Sbjct: 3 EKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKR 62
Query: 369 KK 370
++
Sbjct: 63 RR 64
Score = 35.5 bits (82), Expect = 0.006
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K++K+ K KR + +K+KK+KK+ K R K +K ++K KKK + + +
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 370 KR 371
KR
Sbjct: 61 KR 62
Score = 35.5 bits (82), Expect = 0.007
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K++KK ++ K+ + K++KKK+K+ K + K K+ +++ KKK + + E+
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 369 KKR 371
K+R
Sbjct: 61 KRR 63
Score = 34.0 bits (78), Expect = 0.020
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
KK+K+K+KR + + K KK +KK +KK + ++ KR++ E
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTE 66
Score = 32.8 bits (75), Expect = 0.050
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+KR+KKKK+ + + + K+ +KK +KK + + ++ KR++
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 32.8 bits (75), Expect = 0.054
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK+ K K+ K+++K+KK+ + + + K+ +KK KKK E ++ K+
Sbjct: 3 EKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKR 62
Query: 361 KK 362
++
Sbjct: 63 RR 64
Score = 31.7 bits (72), Expect = 0.16
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K+ +K KR K++KKKK++ K + + KK +KK +KK+E + ++ K
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 364 KKE 366
++
Sbjct: 62 RRR 64
Score = 31.7 bits (72), Expect = 0.16
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+++KKKK+ K R K KK ++K KK+ + + ++ K+++ E
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTE 66
Score = 31.3 bits (71), Expect = 0.20
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
KK+KK+K++ K + KK +KK K+K + + + K+R+ E+
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
Score = 31.3 bits (71), Expect = 0.22
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+K+KKK+KR K + K KK ++K KK+ + + + K++R ++
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
E+ ER+ +K+ + +R+R R K + ++ R K+K K+ +K++ + + R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 35.8 bits (83), Expect = 0.022
Identities = 11/57 (19%), Positives = 37/57 (64%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R++ R ++ +R+ + K+ +E+ ++ + K + ++ R K+K K+ +++++E+ + +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 35.0 bits (81), Expect = 0.033
Identities = 11/46 (23%), Positives = 29/46 (63%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
RE+ E++ +++++ R K R E+ + K+K K+ ++++ + + R
Sbjct: 124 REEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 34.6 bits (80), Expect = 0.050
Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR-KKEEKKKKKKKKKKKEKRKKR 371
RK+ + E+ +++ ++K+ +++R++ R K R ++ K+K K+ +K+E + R
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 33.5 bits (77), Expect = 0.10
Identities = 13/59 (22%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ + ++ E+E+++K+ ++++ + R K R ++ R K+ K K+ +K++ E+ + R
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQ--KAKEMQKEEDEEMRHR 169
Score = 30.4 bits (69), Expect = 1.3
Identities = 8/49 (16%), Positives = 30/49 (61%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ +RE + ++ +++R+R + K + ++ + ++K K +K + ++ + +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 38.5 bits (89), Expect = 0.005
Identities = 14/45 (31%), Positives = 35/45 (77%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++R+ +K KR+ ++K R+E+E++K+K K+++R+++R+ ++ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 37.4 bits (86), Expect = 0.011
Identities = 13/38 (34%), Positives = 32/38 (84%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KKR++ +K KR+ +++ +EE++++K+K+K++E+ ++R
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 37.0 bits (85), Expect = 0.016
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 30/76 (39%)
Query: 254 ALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKK 313
A KR EA+E+AKRE E RE+RER +K+K+
Sbjct: 578 AKKREEAVEKAKREA---------------------------EQKAREERER---EKEKE 607
Query: 314 RKRKRKKRKEKEKKKK 329
++R+R++ +E E+ K
Sbjct: 608 KEREREREREAERAAK 623
Score = 35.4 bits (81), Expect = 0.051
Identities = 15/57 (26%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 313 KRKRKRKKRKEKEKKKKKRK-KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K +KR++ EK K++ ++K +++R+++++K+K ++++R++E ++ K E R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESR 632
Score = 35.4 bits (81), Expect = 0.053
Identities = 12/45 (26%), Positives = 33/45 (73%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+KRE K K++ ++K ++ +E+EK+K+K ++++R+++ ++ +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 35.4 bits (81), Expect = 0.054
Identities = 13/48 (27%), Positives = 34/48 (70%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
K +KR + +K KR+ +++ +E++++K K+K+R+++R+++ + K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.7 bits (79), Expect = 0.090
Identities = 12/48 (25%), Positives = 37/48 (77%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K KK++ +K K++ ++K R++++R+KE++K+++++++++ +R +
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.1 bits (75), Expect = 0.30
Identities = 13/47 (27%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
KK+ + K ++E E +K R++++R+K+++K++ ++++R+ E K
Sbjct: 579 KKREEAVEKAKREAE--QKAREEREREKEKEKEREREREREAERAAK 623
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 37.7 bits (88), Expect = 0.006
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R +KKK K K+K +++K K +K K K KK K+ +KKE K+KKK KK K+
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 367 KRKK 370
+ K
Sbjct: 259 RNNK 262
Score = 35.4 bits (82), Expect = 0.037
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--------KRKKEEKKKKKKKKKKKEK 367
R+RKK+ EK KKK K KK + +K K K KK+E K+KKK KK +K
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 368 RKKR 371
R +
Sbjct: 259 RNNK 262
Score = 28.8 bits (65), Expect = 4.0
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK---KRKKKRKKKKRKKKKRKK 352
E L ++ +E+K K K+ K K +K KK KKK K+KKK KK K++ K+
Sbjct: 206 EKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKRNNKKNY 265
Query: 353 EEKKKKKKKK 362
+ K K K+
Sbjct: 266 SDIKDKYAKE 275
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 36.8 bits (85), Expect = 0.006
Identities = 21/64 (32%), Positives = 46/64 (71%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ +K+ + K+ ++ EKKKK +KK+ K+RK+++R+K+ K++++ +K + KKK+K
Sbjct: 52 KESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQK 111
Query: 368 RKKR 371
++R
Sbjct: 112 ERER 115
Score = 35.2 bits (81), Expect = 0.018
Identities = 22/70 (31%), Positives = 49/70 (70%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E ++ +E ++ +KKKK K++ K++++++++++ KR+K+ +K + KKK+K+ E+
Sbjct: 56 EKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERER 115
Query: 356 KKKKKKKKKK 365
++KK KK K
Sbjct: 116 RRKKLTKKTK 125
Score = 34.1 bits (78), Expect = 0.038
Identities = 17/71 (23%), Positives = 50/71 (70%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK+ + ++ +K K+K+ K++ K++KR++++++ +++K+ +K + K+++K++++
Sbjct: 56 EKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERER 115
Query: 361 KKKKKEKRKKR 371
++KK K+ K
Sbjct: 116 RRKKLTKKTKS 126
Score = 34.1 bits (78), Expect = 0.045
Identities = 22/76 (28%), Positives = 50/76 (65%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ EK +++ K K RK +K+K+ ++KK+ K++KR+++ K+ +++K+ +K
Sbjct: 44 KEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKI 103
Query: 354 EKKKKKKKKKKKEKRK 369
E KKK+K++++ ++K
Sbjct: 104 ELSKKKQKERERRRKK 119
Score = 34.1 bits (78), Expect = 0.049
Identities = 16/53 (30%), Positives = 40/53 (75%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ EK+E +++K+++R+++ KR+++ +K + KKK+++++R++KK KK +
Sbjct: 74 LDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 30.2 bits (68), Expect = 0.85
Identities = 18/61 (29%), Positives = 44/61 (72%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ ++++K +KK+ K+++++++EKE K++++ +K + +KK+K ++++RKK KK K
Sbjct: 66 RKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTK 125
Query: 359 K 359
Sbjct: 126 S 126
Score = 28.7 bits (64), Expect = 2.8
Identities = 20/72 (27%), Positives = 43/72 (59%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L ++ R +K K +++ KE +K+ K K+ RK ++KKK +KK+ K+ K++
Sbjct: 28 LTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKRE 87
Query: 358 KKKKKKKKEKRK 369
+++K+ K +++
Sbjct: 88 QREKELAKRQKE 99
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 37.6 bits (87), Expect = 0.006
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+K ++KK +K KE K KK K K +K K KK K K KK K +K
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEK 69
Query: 365 KEKRKK 370
E KK
Sbjct: 70 TESVKK 75
Score = 36.9 bits (85), Expect = 0.013
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK K+K + K+ KK K+ K K+ K K KK K KK K K K+
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT 64
Score = 35.3 bits (81), Expect = 0.036
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K+ KK K + +K K K K+ K KK K K KK K +K +
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESV 73
Query: 364 KKEKRKKR 371
KKE K+
Sbjct: 74 KKESVAKK 81
Score = 35.3 bits (81), Expect = 0.036
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K K +K K K K+ K KK K K +K K +K + K++ KK KK
Sbjct: 26 SKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKK 85
Query: 361 KKKKKEKRKK 370
+ E +
Sbjct: 86 EAVSAEVFEA 95
Score = 34.2 bits (78), Expect = 0.093
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K + K K+ K K +K K +K K K KK K +K + +K+ K
Sbjct: 21 KKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAK 80
Query: 361 KKKKKEKRKK 370
K KKE
Sbjct: 81 KTVKKEAVSA 90
Score = 33.8 bits (77), Expect = 0.14
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
E K+ KKK + K+ K+ K+ K KK K K KK + K+ K K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 362 KKKKEKRKK 370
KK K +K
Sbjct: 61 KKVTVKFEK 69
Score = 32.2 bits (73), Expect = 0.37
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K KK + +K + K KK K ++ + KK+ KK KKE + + K
Sbjct: 42 KAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNK 98
Score = 31.5 bits (71), Expect = 0.57
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ K+ K K+ K K KK + KK + K KK K K E KK+
Sbjct: 20 AKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVA 79
Query: 362 KKKKEK 367
KK +K
Sbjct: 80 KKTVKK 85
Score = 31.5 bits (71), Expect = 0.59
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K +K K KK + K +K K +K KK +K K++ + E K K
Sbjct: 42 KAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
Query: 362 KKKK 365
K
Sbjct: 102 NTSK 105
Score = 31.5 bits (71), Expect = 0.66
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ K+ + +K K + KK K KK K + K+ K +K E KK+
Sbjct: 19 AAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESV 78
Query: 362 KKKKEKRK 369
KK K++
Sbjct: 79 AKKTVKKE 86
Score = 29.5 bits (66), Expect = 2.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K +KK E++K K+ ++ + KK K K +K K KK K + K+
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 38.4 bits (90), Expect = 0.006
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 299 IRE-KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
IR ++E+K+ ++ K R R+ R E+EK ++ + KK + R K + K
Sbjct: 438 IRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKA 497
Query: 358 KK 359
KK
Sbjct: 498 KK 499
Score = 33.8 bits (78), Expect = 0.16
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 300 REKRERKRRKKKKKRKRKRKKR------KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
REK R+ R KK R K + + K KK + K +
Sbjct: 464 REKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAR 523
Query: 354 EKKKKKKKKKKKE 366
E +K + + ++ E
Sbjct: 524 EARKAQARARQAE 536
Score = 33.4 bits (77), Expect = 0.22
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K E + +++KK+ + K R E + + +R+K R+ + KK + + K+
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALA 493
Query: 361 KKKKK 365
+ K K
Sbjct: 494 RVKAK 498
Score = 29.9 bits (68), Expect = 2.6
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R+ K + R +++KKK + K R + R+ + ++K ++ KK + + K+K
Sbjct: 432 RQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDK 485
Score = 29.5 bits (67), Expect = 2.9
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 301 EKRERKRRKKKKKRKR-KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ R R+K + R K+ K K + K KK + K +
Sbjct: 457 ARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDN 516
Query: 360 KKKKKKEKRKKR 371
+ +K
Sbjct: 517 SAVIAAREARKA 528
Score = 29.5 bits (67), Expect = 2.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R+ K + R +++K+K +E K + ++ R ++ K + + K+ E + K K
Sbjct: 432 RQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDK 485
Score = 29.1 bits (66), Expect = 4.9
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK---RKKKRKKKKRKKKKRKKEEKKK 357
E R+ + ++K R+ + KK E K K R K +K + K +
Sbjct: 456 EARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPD 515
Query: 358 KKKKKKKKEKRKK 370
+E RK
Sbjct: 516 NSAVIAAREARKA 528
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 36.1 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK---RKKKKRKKKKRKKEEKKKKKKK 361
R RK + K +E++K+K+K+KKKK++ + R + + KKK+ + + KK ++
Sbjct: 58 RGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEED 117
Query: 362 KKKKEKRKKR 371
K++ EK K++
Sbjct: 118 KERVEKMKEK 127
Score = 29.9 bits (68), Expect = 0.97
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK---KKRKKKRKKKKRKKKKRKKEEKKKK 358
++ ++ K + KK KEK+KKKKK + + + +++KK+++ +K EE K++
Sbjct: 61 RKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKER 120
Query: 359 KKKKKKK 365
+K K+K
Sbjct: 121 VEKMKEK 127
Score = 29.6 bits (67), Expect = 1.3
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEK--KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
E+ + ++KK++++K+KK+KE E + + R+KKK ++ KK ++ K + E+ K+
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKE 126
Query: 358 KK 359
K+
Sbjct: 127 KR 128
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only the
C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but the
same post-lag growth rate as a wild-type strain. yihI is
expressed during the lag period. Overexpression of yihI
inhibits cell growth and biogenesis of the 50S ribosomal
subunit. YihI is an unusual, highly hydrophilic protein
with an uneven distribution of charged residues,
resulting in an N-terminal region with high pI and a
C-terminal region with low pI.
Length = 169
Score = 36.6 bits (85), Expect = 0.007
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
RK K K + K+K + + ++ +++KRKKKRK K + ++ E +K+K +K
Sbjct: 1 RKSGKNGPKLAP-KGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQK 59
Query: 365 KEKR 368
K+ R
Sbjct: 60 KDPR 63
Score = 31.9 bits (73), Expect = 0.25
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
L +E RERKR+KK+K K + +E E +K+K +K+ + KK + +
Sbjct: 18 TRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKKPVPLIVEFK 77
Query: 354 EKKKKKKKKKKKEKRKK 370
K +K+ KKKK K+ K
Sbjct: 78 VKPEKQAPKKKKVKKPK 94
Score = 31.5 bits (72), Expect = 0.42
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK---------RKKKRKKKKRKKKKR---K 351
+ + KKK R ++ +E K+KKKRK K +K+K +KK R K
Sbjct: 9 KLAPKGKKKTRYELDQEARE-RKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSK 67
Query: 352 K------EEKKKKKKKKKKKEKRKKR 371
K E K K +K+ KK+K KK
Sbjct: 68 KPVPLIVEFKVKPEKQAPKKKKVKKP 93
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 38.1 bits (89), Expect = 0.007
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK--KKRKKKKRKKEEKKKKK 359
K+ +K + K R+ + KE + K K + KK ++ +++ ++ K KK
Sbjct: 370 KKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKK 429
Query: 360 KKKKKKEKRKK 370
KK+KKKE +K
Sbjct: 430 KKRKKKEWFEK 440
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/68 (19%), Positives = 29/68 (42%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
L+ A + + + + + + KK + ++ +E K +KKK++K
Sbjct: 375 LKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKK 434
Query: 338 KKRKKKKR 345
K+ +K R
Sbjct: 435 KEWFEKFR 442
Score = 30.4 bits (69), Expect = 1.7
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K +R + ++ E EKK +K KK K K++ ++ K E+ ++K
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K K+ + KK K+ K+ + K +K+E + ++ +K +E R+K
Sbjct: 274 KFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 29.3 bits (66), Expect = 3.9
Identities = 13/70 (18%), Positives = 32/70 (45%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K + V +D ++ ++ K ++ K+ +E +++ ++ K K+KK+
Sbjct: 373 KKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKR 432
Query: 344 KRKKKKRKKE 353
K+K+ K
Sbjct: 433 KKKEWFEKFR 442
Score = 28.1 bits (63), Expect = 8.8
Identities = 12/82 (14%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK---------KRKK 347
I++ +K +K+ K+ K +++E + ++ +K + ++K + +
Sbjct: 278 DKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGL 337
Query: 348 KKRKKEEKKKKKKKKKKKEKRK 369
K + + ++ K + +K K
Sbjct: 338 KSVRLADFYGNEEIKIELDKSK 359
Score = 28.1 bits (63), Expect = 9.1
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K K+ + ++K +K KK K EK++ + ++ +K + R
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELR 320
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 37.7 bits (88), Expect = 0.007
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKR-------KKKKRKKKRKKKKRKK 347
I+ E+ + R KKK ++R ++K K ++ R KK ++ ++K
Sbjct: 289 ARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATA 348
Query: 348 KKRKKEEKKKKKKKKKKKEKRK 369
K +K + ++ +KK KK K
Sbjct: 349 KGAQKVKNRRARKKAKKARLAK 370
Score = 36.6 bits (85), Expect = 0.018
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ KKK ++R +KK K ++ + R KK RK ++K + +K K ++ +K
Sbjct: 302 RPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARK 361
Query: 366 EKRKKR 371
+ +K R
Sbjct: 362 KAKKAR 367
Score = 33.1 bits (76), Expect = 0.23
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
KK ++ + K K +K K ++ +KK KK + K + + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 32.7 bits (75), Expect = 0.26
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
KK ++ +EK K +K K R+ ++K KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 32.3 bits (74), Expect = 0.39
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+ RK ++K + +K K +R +KK KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 31.6 bits (72), Expect = 0.65
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
KK +K +++ + +K + ++ RKK +K + K K + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 29.7 bits (67), Expect = 2.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
+R+ + K K +K K R+ ++K KK R K K
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 28.9 bits (65), Expect = 4.0
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKK------------KKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + KKK K++ +KK K KK +K +EK K +K K +
Sbjct: 298 QAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNR 357
Query: 368 RKKR 371
R ++
Sbjct: 358 RARK 361
Score = 28.5 bits (64), Expect = 6.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 305 RKRRKKKKKRKRKR-KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+K RK + K K +K K ++ RKK K+ + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 37.3 bits (87), Expect = 0.008
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+E RE R K ++ +K K+ K K+K RKK KK+ R K+KR +K+K
Sbjct: 246 TAKEGRE-DREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQK 304
Query: 358 KKKKKKKKEKRKK 370
+ ++K+
Sbjct: 305 VLRAHILRQKKGG 317
Score = 31.5 bits (72), Expect = 0.62
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKK----------RKKKKRKK-------KRK 341
I+E R K K K KR+ + E+ + KKKK+ K K
Sbjct: 191 IQELRLEKGVDKALGGKLKRRDKDAPERHSDELVDADDIEGPAKKKKQTKEERIATAKEG 250
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ R+K +K +K K+ K KEK +K
Sbjct: 251 REDREKFGSRKGKKDKEGKSTTNKEKARK 279
Score = 31.2 bits (71), Expect = 0.74
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 20/84 (23%)
Query: 308 RKKKKKRKRKR----KKRKEKEKKKKKRKKKK---------RKKKRKK-------KKRKK 347
KKKK+ K +R K+ +E +K RK KK ++K RKK KKR +
Sbjct: 233 AKKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVR 292
Query: 348 KKRKKEEKKKKKKKKKKKEKRKKR 371
K+K+ + K+K + ++KK
Sbjct: 293 GKQKRSLRDKQKVLRAHILRQKKG 316
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 36.5 bits (85), Expect = 0.009
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 23/100 (23%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKK-----RKKKKRK--KKRKKKKRKK 347
T L REK K + K K +KK +K KK K + + KR K +K
Sbjct: 65 TTRLPREKPLPKPKPPTKWEKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEK 124
Query: 348 ----------------KKRKKEEKKKKKKKKKKKEKRKKR 371
+K+ EKK++ K +K+E + K+
Sbjct: 125 DWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 37.2 bits (87), Expect = 0.009
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK--RKKKKRKKEEKKKKKKK 361
ERKR KK R+ KR +K +K + K K KKR K+K KK + EE+ K+K
Sbjct: 19 ERKR----KKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQKV 74
Query: 362 KKKKEK 367
K +
Sbjct: 75 DDKVPE 80
Score = 36.8 bits (86), Expect = 0.009
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 299 IREKRERK-RRKKKKKRKRKRKKRKEKEKKKKKRK------KKKRKKKRKKKKRKKKKRK 351
I R+R RR ++RKRK++ R+ ++ KK +K K KK+ K+K + KK K
Sbjct: 4 IELHRKRHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIK 63
Query: 352 KEEKKKKKKKKKKKEKR 368
E++ K+K K
Sbjct: 64 MHEERNVKQKVDDKVPE 80
Score = 33.8 bits (78), Expect = 0.099
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-----KKKRKKKKRKKEEKKKKKKKKKKKE 366
+KR +R +E+++KK+ R+ KR KK + K K KKR KE+ + KK K +E
Sbjct: 8 RKRHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEE 67
Query: 367 KRKKR 371
+ K+
Sbjct: 68 RNVKQ 72
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 37.4 bits (86), Expect = 0.009
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+++++ +K R RKE E K K K R K + ++ + +E+ +KK+K + +E
Sbjct: 8 KKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEE 67
Query: 367 KRK 369
KR+
Sbjct: 68 KRR 70
Score = 32.8 bits (74), Expect = 0.29
Identities = 14/74 (18%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEK----KKKKRKKKKRKKKRK------KKKRKKKKR 350
K+ K++++ K+ + +++ ++K K K R K + ++ K++ +KK++
Sbjct: 3 PKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEK 62
Query: 351 KKEEKKKKKKKKKK 364
+ E+K+++ +K+
Sbjct: 63 MRMEEKRREPEKQV 76
Score = 29.7 bits (66), Expect = 2.6
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK K++++ K+ ++ +K+ K K + + + + K+ E K++ +KKEK
Sbjct: 4 KKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKM 63
Query: 369 K 369
+
Sbjct: 64 R 64
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 37.9 bits (88), Expect = 0.009
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L K+ + ++KKK K+K + K K+ RK K + ++ KKK
Sbjct: 69 LKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKK 128
Query: 358 KKKKKKKKEKRKKR 371
K +K+KK
Sbjct: 129 ITVNKSTNKKKKKV 142
Score = 35.6 bits (82), Expect = 0.039
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 271 VSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKK 330
S ++++ + +D + + +++ ++ K ++KKK +K+ K
Sbjct: 41 DSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSK 100
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ +K K K E+ KKK K K+KK+
Sbjct: 101 NNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKK 141
Score = 34.4 bits (79), Expect = 0.096
Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 282 FAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKR--------KRKKRKEKEKKKKKRKK 333
F K+ DL D K + K++KK KK+ K K+
Sbjct: 63 FNKTDDLKDSK---------KTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAIS 113
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKK--KKKKEKRK 369
RK K K +K KKK + KKKKK K E K
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Score = 32.9 bits (75), Expect = 0.28
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
RK K + EK KKK K KKK+K K + K + K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 37.7 bits (87), Expect = 0.009
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 255 LKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKR 314
LK RE+ E AKR + DA + + E R++++ K +
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262
Query: 315 K-----RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K+ + +K++ K + KK ++ K K K + K++ K +K+ + K
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
Score = 36.1 bits (83), Expect = 0.026
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK-KKRKRKRKKRKEKEKKKKKRKKKKR 336
LR+ K ++ + D + RE +E +R ++ K+ K++ +K ++K +
Sbjct: 186 LREDNEKGVNFRRDMTD--LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNA 243
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+R + ++K+++ K K K+ ++
Sbjct: 244 DKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
Score = 34.6 bits (79), Expect = 0.072
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+E K+ + +KR+ + K + E +K ++ K K K K+ K K+ E K+ +
Sbjct: 268 SPKEDKQVAENQKREIE-KAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 361 KKKKKE 366
+KK++
Sbjct: 327 QKKREP 332
Score = 31.5 bits (71), Expect = 0.85
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKR---KEKEKKKKKRKKKKRKKK-RKKKKRKKK 348
VDT+ + +K R+ +K R+ KE+E ++ ++ ++ K++ KK+ K
Sbjct: 172 VDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADK 231
Query: 349 KRKKEEKKKKKKKKKKKEKRKK 370
++K + + K++ E R+K
Sbjct: 232 AQQKADFAQDNADKQRDEVRQK 253
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 36.8 bits (86), Expect = 0.010
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 318 RKKRKEKEKKKKKRKKK----KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
RK K++ K +K + + +K KKK KEEKK K++K K E+
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEE 122
Score = 27.5 bits (62), Expect = 8.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K +K K ++ KK+ K +K + + +KE+KK K++KK K
Sbjct: 56 TKPVFQKNFFKDFRKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKE 115
Query: 369 KK 370
+K
Sbjct: 116 EK 117
Score = 27.5 bits (62), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ K K+K ++EKK K +K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 36.4 bits (85), Expect = 0.010
Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR--KKKKRKKKKRKKEEKKKKKKKKKKKE 366
KKK +K K++KRK++++ +K + K+ ++ K +K +R +E ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72
Score = 36.0 bits (84), Expect = 0.014
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KKK KK K++K++++K+ +K +++ K+ ++ K EK ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56
Score = 34.1 bits (79), Expect = 0.052
Identities = 12/61 (19%), Positives = 40/61 (65%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L+ +K+ +K +K+K+K++++ +K + + K+ ++ K ++ ++ R+ ++++ E ++
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQ 70
Query: 358 K 358
K
Sbjct: 71 K 71
Score = 33.7 bits (78), Expect = 0.074
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 14/58 (24%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKK-----------KRKKEEKKKKKK---KKKKKEKRKK 370
KKK +K KK K+K++K+ RK + K EK ++ + ++++ E +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 31.4 bits (72), Expect = 0.47
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 11/51 (21%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKE-----------EKKKKKKKKKKKEKRKKR 371
KKK +K K++K+K++K+ RK E+ K +K ++ +E ++R
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQR 64
Score = 31.0 bits (71), Expect = 0.59
Identities = 8/58 (13%), Positives = 35/58 (60%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K++ KK K+++++++++ ++ + K+ + K ++ ++ R+ +++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 31.0 bits (71), Expect = 0.63
Identities = 8/58 (13%), Positives = 31/58 (53%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K+E+++++K+ ++ + K+ ++ + +K + + ++R+ + +K + K
Sbjct: 21 KKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIK 78
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 36.9 bits (86), Expect = 0.010
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 29/101 (28%)
Query: 300 REKRERKRRKKK--------KKRKRKRKKRKEKEKKKKKRKKKK---------------- 335
E+ ++R KK K ++R ++K+ EK KK +KK+K
Sbjct: 134 SEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDA 193
Query: 336 -RKKKRKKKKRKKKKRKKEEKKKKKKKKK----KKEKRKKR 371
+ +KK ++ R K K+K K K K++ K
Sbjct: 194 AKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKS 234
Score = 36.2 bits (84), Expect = 0.020
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK---RKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +KK + +K E+ +K+R+ KK K+ K ++R K+K+ EK KK KKK+K
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Score = 33.5 bits (77), Expect = 0.12
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRK-----KKRKKKK------------RKKKKRK 351
K +K+ RK + K KRK K K KKR K KK +
Sbjct: 194 AKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMKG 253
Query: 352 KEEKKKKKKKKKKKEKR 368
K K+ K +R
Sbjct: 254 GGGAGKGGNKRPGKSRR 270
Score = 31.9 bits (73), Expect = 0.39
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEK-KKKKRKKKKRKKKRKKKKRKKKKRK----- 351
L+ E +K ++ +K++ +K K+ + K ++R K+K+ K KK KKK++
Sbjct: 124 LLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEG 183
Query: 352 ------KEEKKKKKKKKKKKEKRKKR 371
++ K KKK ++ R
Sbjct: 184 DLFDFLVDDAAKGGSKKKGRKGGAAR 209
Score = 30.0 bits (68), Expect = 1.6
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 315 KRKRKKRKEKEKKKK--KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K ++K E KK + +K++ KK K+ + +K +++ ++KK +K KK K+K++
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRK 177
Score = 30.0 bits (68), Expect = 1.7
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKK------KRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K +K+ E KK ++ RK++ KK K ++R KE+K +K KK K+KRK
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Score = 29.6 bits (67), Expect = 2.7
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK-----KKKKKKKKE 366
K RK+ + K+ ++ RK+++ KK K+ + +K + + +EKK KK KKK+K
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Score = 28.1 bits (63), Expect = 7.5
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK--KKKKKKKKKEKRK 369
+K +KK + KK ++ RK+++ KK K+ +K +++ KEK+
Sbjct: 118 QKVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKD 164
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 37.3 bits (87), Expect = 0.011
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
E + KK+ K K+ +++ KE+ K K + +K
Sbjct: 5 GEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 36.5 bits (85), Expect = 0.020
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K KK+ K K+ +++K KEE K K + +K
Sbjct: 7 PLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.9 bits (73), Expect = 0.53
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
KK+ K K+ + ++ K++ K K + +K
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.9 bits (73), Expect = 0.56
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ K +KR + K+ E+EK K+ K K + +K
Sbjct: 4 NGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.9 bits (73), Expect = 0.65
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
K +KR K K+ E++K +++ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.7 bits (70), Expect = 1.2
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
E K +K+ K K+ ++K K++ + K + +K
Sbjct: 6 EPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 30.7 bits (70), Expect = 1.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K KKR K K+ ++K K+E K K RK
Sbjct: 10 KNALKKRLKA--KQAEEEKAAKEEAKAAAAAAAAKGRSRKSA 49
Score = 30.3 bits (69), Expect = 1.8
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K KK+ K K+ + +K K++ + + + +K
Sbjct: 9 SKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.3 bits (69), Expect = 1.9
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
E K K++ K K+ +E++ K++ K K + RK E
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDET 55
Score = 29.6 bits (67), Expect = 3.0
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ K +K K K+ +++K K+ K K +K
Sbjct: 5 GEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 28.0 bits (63), Expect = 8.3
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K KKR + ++ ++++ K+ K K + +K
Sbjct: 9 SKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 37.4 bits (87), Expect = 0.011
Identities = 13/73 (17%), Positives = 42/73 (57%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I E +++ K +++ ++ +E K++ + +K + + KRK +++ +E +++
Sbjct: 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268
Query: 359 KKKKKKKEKRKKR 371
++ KK+ E+ +++
Sbjct: 269 EELKKEIEELEEK 281
Score = 36.2 bits (84), Expect = 0.027
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEK--EKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
EI R+ +K +K ++ ++ KE+ E +K+ + K+K ++K R+ ++R E
Sbjct: 211 EISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER-IE 269
Query: 354 EKKKKKKKKKKKEKRKK 370
E KK+ ++ ++K K K
Sbjct: 270 ELKKEIEELEEKVKELK 286
Score = 35.8 bits (83), Expect = 0.039
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E E +RK ++K + ++ +E +K+ ++ ++K ++ K K+K ++ + E ++
Sbjct: 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD 307
Query: 361 KKKKKEKRKKR 371
+ ++ EKR R
Sbjct: 308 ELREIEKRLSR 318
Score = 35.0 bits (81), Expect = 0.060
Identities = 16/73 (21%), Positives = 42/73 (57%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++EK E + + + + R+ +++ + ++ ++R K+ +K++R +E KKK
Sbjct: 288 LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347
Query: 359 KKKKKKKEKRKKR 371
K+ +K+ E+ ++R
Sbjct: 348 KELEKRLEELEER 360
Score = 35.0 bits (81), Expect = 0.065
Identities = 17/70 (24%), Positives = 43/70 (61%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EKR + ++ + + K+ +EKE++ ++ KKK ++ +++ ++ +++ EE K KK+
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 361 KKKKKEKRKK 370
+ ++ +KR
Sbjct: 373 ELERLKKRLT 382
Score = 34.7 bits (80), Expect = 0.093
Identities = 19/75 (25%), Positives = 45/75 (60%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E I+E E++ R ++ K+K K +++ +E +++ ++ K K+++ +R KK+
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386
Query: 356 KKKKKKKKKKEKRKK 370
+K +K+ ++ EK K+
Sbjct: 387 EKLEKELEELEKAKE 401
Score = 34.3 bits (79), Expect = 0.11
Identities = 17/71 (23%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK-KK 359
E+ E R + + + R E E+ +K+R++ K+ ++ K++ +++++ K+E +K +K
Sbjct: 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
Query: 360 KKKKKKEKRKK 370
++ +E R+K
Sbjct: 719 ALERVEELREK 729
Score = 34.3 bits (79), Expect = 0.13
Identities = 15/61 (24%), Positives = 36/61 (59%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ R+ + +E + + ++ +++++ KK +K K + EE++K KK+ +K EK +
Sbjct: 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
Query: 371 R 371
R
Sbjct: 722 R 722
Score = 33.5 bits (77), Expect = 0.21
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK- 358
E+ + R+ +K+ R ++ E++ K+ ++K+ + + KKK K+ +++ EE +++
Sbjct: 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH 361
Query: 359 ------KKKKKKKEKRKKR 371
K KK++ E+ KKR
Sbjct: 362 ELYEEAKAKKEELERLKKR 380
Score = 32.7 bits (75), Expect = 0.38
Identities = 16/82 (19%), Positives = 42/82 (51%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
I TE + +E+++ ++ R+ + E +++ K +K K+ ++ K + ++
Sbjct: 183 KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
+KE + + K+K +EK ++
Sbjct: 243 LEKELESLEGSKRKLEEKIREL 264
Score = 32.7 bits (75), Expect = 0.39
Identities = 16/64 (25%), Positives = 37/64 (57%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
RE + + + KR++ +K +K K + ++R+K +K+ ++ +K ++ E+ ++K KK
Sbjct: 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKK 732
Query: 363 KKKE 366
K
Sbjct: 733 YKAL 736
Score = 32.3 bits (74), Expect = 0.49
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K+E R KK+ +K +++ ++ +K K++ ++ K R + +K+ ++ KK
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
Query: 359 KKKKKKKEKRK 369
++ KK K K
Sbjct: 427 AIEELKKAKGK 437
Score = 32.3 bits (74), Expect = 0.52
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 301 EKRERKRRKKKKKRK-RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E E + KK++ + +KR EK +K+ ++ ++ K+ +++ K + E KK+
Sbjct: 362 ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
Query: 360 KKKKK 364
K+ KK
Sbjct: 422 KELKK 426
Score = 30.8 bits (70), Expect = 1.4
Identities = 13/73 (17%), Positives = 37/73 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++K + ++ ++ +R + K KK++ + KKR +K +K+ + E+ K++
Sbjct: 343 LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
Query: 359 KKKKKKKEKRKKR 371
+++ K +
Sbjct: 403 IEEEISKITARIG 415
Score = 30.8 bits (70), Expect = 1.5
Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 288 LIDVIVDTEILIREKRE-RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ + I + E E +K+ K+ +KR + ++R E ++ K +K++ + K++
Sbjct: 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKK 370
+K +KE ++ +K K++ +E+ K
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISK 409
Score = 30.4 bits (69), Expect = 1.6
Identities = 13/70 (18%), Positives = 37/70 (52%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KR +R +K KR ++ ++++K+ + ++ + + +++ +K EK+ K+ +
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
Query: 362 KKKKEKRKKR 371
+ K+E +
Sbjct: 235 ELKEEIEELE 244
Score = 30.4 bits (69), Expect = 1.9
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKK-RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
++E E+ ++ ++ ++K ++ K KEK K + + K KK +K + KK+ E +KK
Sbjct: 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKK 564
Query: 358 KKKKKKKKEKRKKR 371
+ +++ + K
Sbjct: 565 LDELEEELAELLKE 578
Score = 30.0 bits (68), Expect = 2.3
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 296 EILIREKRER--KRRKKKKKRKRKRKKRKEKEKKK----KKRKKKKRKKKRKKKKRKKKK 349
+IL + E K + K ++R +R EK K+ ++ K+K K+ + + +
Sbjct: 153 QILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI 212
Query: 350 RKKEEKKKKKKKKKKKEKRK 369
+ + +++ +K +KE ++
Sbjct: 213 SSELPELREELEKLEKEVKE 232
Score = 30.0 bits (68), Expect = 2.3
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ E+K + +K +++ K + E + KK+ +K + KK+ + KK +EE + K
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
Query: 361 KKKKK 365
+ ++
Sbjct: 578 ELEEL 582
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/73 (16%), Positives = 38/73 (52%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K K ++++K +K ++ +K ++ +K+ ++ RK+ + +KK +EE ++
Sbjct: 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
Query: 359 KKKKKKKEKRKKR 371
+++ + +
Sbjct: 665 REEYLELSRELAG 677
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 37.8 bits (88), Expect = 0.011
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ + ++K+ +KK + + + ++EKE + + ++KK + + K E+
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEE 1559
Query: 356 -----KKKKKKKKKKEKRKKR 371
KK+K KK+ K
Sbjct: 1560 DYAESDIKKRKNKKQYKSNTE 1580
Score = 36.6 bits (85), Expect = 0.026
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E KK +KKK +KK + + R +EEK+ + + + +K KK
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKG 1544
Score = 32.8 bits (75), Expect = 0.38
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK------KRKKKKRKKE 353
EK+ + + ++ K + + + K+KK + ++K + KKRK
Sbjct: 1513 NEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKN- 1571
Query: 354 EKKKKKKKKKKKE 366
KK+ K + E
Sbjct: 1572 --KKQYKSNTEAE 1582
Score = 32.4 bits (74), Expect = 0.52
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
K K + ++K K+KKKK KKK ++ KR++K R
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.6 bits (72), Expect = 0.80
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K+ + K+ E K ++K KKK+KK+K+K+++ K+EEK +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.2 bits (71), Expect = 0.99
Identities = 12/77 (15%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ + E R ++ ++ + + + K K+ + ++K ++ + KK++ K
Sbjct: 1515 KKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNK-- 1572
Query: 355 KKKKKKKKKKKEKRKKR 371
K+ K + + + KR
Sbjct: 1573 KQYKSNTEAELDFFLKR 1589
Score = 30.1 bits (68), Expect = 2.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK R + + K ++K KK++KK+KKK+++ K + K R
Sbjct: 721 MKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.7 bits (67), Expect = 3.2
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ R K + + ++K KKKK+K+KK+++E K+++K +
Sbjct: 722 KKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.3 bits (66), Expect = 4.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+ + K + K +K K+KKKK KK+E++ K+++K + E
Sbjct: 718 SGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 28.9 bits (65), Expect = 4.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKK 328
D E I + E K +KKKKK K+K ++ K +EK +
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.9 bits (65), Expect = 5.6
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+I K+ + K + +EK KKKKK++KKK ++ ++++K +
Sbjct: 716 DISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.5 bits (64), Expect = 7.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK + K + K + K ++KKKK+KKK+++ KR+++
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 28.5 bits (64), Expect = 7.3
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 34/100 (34%)
Query: 304 ERKRRKKKKKRKRK------------------RKK-------RKEKEKKKKKRKKKKRKK 338
+ R KKKKK+K RK+ KE +KK +K KKK
Sbjct: 877 HKDRMKKKKKKKNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFKKKYFLV 936
Query: 339 KRKKKKRKKKKRKKEEKKKK---------KKKKKKKEKRK 369
+ K+R K K ++ KK K+ K+ KR
Sbjct: 937 LKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRN 976
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 37.5 bits (86), Expect = 0.012
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K E K +K + +++ RKE++ KK K K +K+ KK K+ K ++
Sbjct: 428 DKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAA 487
Query: 361 KKKKKE 366
K++ E
Sbjct: 488 SKEELE 493
Score = 32.1 bits (72), Expect = 0.56
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K +++++ +K+++ KK K K KKE KK KK K +R
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIER 484
Score = 31.3 bits (70), Expect = 0.91
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
E +K RK ++R++ RK+++ KK K + K KK+ K+ +K
Sbjct: 431 ETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKK 477
Score = 30.5 bits (68), Expect = 1.5
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 23/91 (25%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE------ 353
+ + ++ RK+++ +K K + + KK+ KK +K K ++ K + E
Sbjct: 440 KLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKADD 499
Query: 354 -----------------EKKKKKKKKKKKEK 367
EK KK +K KKK
Sbjct: 500 EDDEQLDHFDMKSILKAEKFKKNRKLKKKAS 530
Score = 30.5 bits (68), Expect = 1.7
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 23/89 (25%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK---- 361
K +K ++R+ RK+R+ K+ K K KK+ KK KK K E K++
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELI 495
Query: 362 -------------------KKKKEKRKKR 371
K +K K+ ++
Sbjct: 496 KADDEDDEQLDHFDMKSILKAEKFKKNRK 524
Score = 30.1 bits (67), Expect = 1.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K + +K RK + +++ RK+++ KK + K KKE K+
Sbjct: 426 SDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKK 474
Score = 29.8 bits (66), Expect = 2.5
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ +K ++K+K+ K + + K + K KKRK E+ ++++ + + K+
Sbjct: 564 KKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKR 619
Score = 29.4 bits (65), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK +K K K K + + K + K KKRK +K + ++ + K K+ +
Sbjct: 564 KKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKRSGK 622
Score = 29.4 bits (65), Expect = 4.0
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ +K +++++ K E+ + K K K++K K +R++ R + K+ K
Sbjct: 564 KKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKRSGK 622
Score = 29.4 bits (65), Expect = 4.2
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E I + + R +++ +++R+ KK K+ K KK+ KK KK K ++ ++
Sbjct: 431 ETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKE 490
Query: 356 K-----------------------KKKKKKKKKEKRKK 370
+ K +K KK ++ +KK
Sbjct: 491 ELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKK 528
Score = 29.0 bits (64), Expect = 4.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + +K +K + +++ +K+++ KK + + K KK+ +K KK
Sbjct: 429 KLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKK 477
Score = 28.6 bits (63), Expect = 7.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K K+ +K+KR K ++ + K K K++K EK ++++ + K KR
Sbjct: 564 KKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKR 619
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 35.3 bits (82), Expect = 0.014
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 304 ERKRRKKKK---KRKRKRKKRKEKEKKKKKRKKKK---RKKKRKKKKRKKKK-RKKEEKK 356
R RK+K + K ++RK KEKKKKK+K+ + R + R+KKK + + RKK E+
Sbjct: 56 TRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEED 115
Query: 357 KKKKKKKKKEKR 368
KK+ ++ K ++
Sbjct: 116 KKRIEQLKAARK 127
Score = 33.7 bits (78), Expect = 0.039
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 309 KKKKKRKRKRKKRKEKEK---KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK- 364
K++++ K + K R E ++ R +KRK + K +++RK +EKKKKKKK+ +
Sbjct: 32 KREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELEN 91
Query: 365 ------KEKRKKR 371
+EK+K+
Sbjct: 92 FYRFQIREKKKEE 104
Score = 28.7 bits (65), Expect = 2.2
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKE------KEKKKKK----RKK---KKRKKKRK 341
R K +RRK K+K+K+K+K+ + +EKKK++ RKK K++ ++
Sbjct: 63 KAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQL 122
Query: 342 KKKRK 346
K RK
Sbjct: 123 KAARK 127
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 36.2 bits (84), Expect = 0.014
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKR------KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K K KK K + ++ K++K ++KKRK E + ++++ K +KEK
Sbjct: 2 KKPKPKKCKVCGVYFVPARSGQKVCSPECALALKREKAQEKKRKAEAQAERRELKARKEK 61
Query: 368 RKKR 371
K R
Sbjct: 62 LKTR 65
Score = 33.5 bits (77), Expect = 0.085
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
K+ K +EKK+K + +R++ + +K++ K +
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRS 66
Score = 32.3 bits (74), Expect = 0.25
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
K++K +++KRK + E+++ K +K+K K + K
Sbjct: 34 LKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 31.2 bits (71), Expect = 0.51
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
+ +E+KR+ + + +R+ K RKEK K + K
Sbjct: 37 EKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 31.2 bits (71), Expect = 0.63
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
KR++ ++K+++ E + ++R+ K RK+K K +
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRS 66
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K++K ++KKRK + + ++R+ K RK++ K + K
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 29.6 bits (67), Expect = 2.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
KR+K +EK++K + + +++ K RK+K + + KE
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 29.6 bits (67), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
KR K ++K+++ + + +E K +K K K R
Sbjct: 34 LKREKAQEKKRKAEAQAERRELKARKEKLKTRS 66
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K ++ ++KKRK + + ++R+ K RK+K + + + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 29.2 bits (66), Expect = 2.6
Identities = 7/32 (21%), Positives = 22/32 (68%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K+++ +++K+K + +R++ + +K+K K +
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRS 66
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+++ ++K++K + +R++ K +KE+ K + K+ +
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKEAQA 74
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 36.1 bits (84), Expect = 0.014
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 22/95 (23%)
Query: 299 IREKRERKRRKKKKKRKRKRKK---------RKEKEK--------KKKKRKKKKRKKK-- 339
+ E + RK+ + K+ ++ +KK E+EK KK K+KKKKRKK
Sbjct: 113 VAEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYV 172
Query: 340 -RKKKKRKKKKRKKEEKKKKK--KKKKKKEKRKKR 371
KK + K R K K K K + KK+ R +
Sbjct: 173 VAKKGNKGKAGRPKGVKGKYKVVDPRMKKDLRALK 207
Score = 34.6 bits (80), Expect = 0.055
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEK----KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
RE+ ++ KK +K K+KK+K K+ KK + K R K K K + R K++ +
Sbjct: 147 REKAKQIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYKVVDPRMKKDLRAL 206
Query: 359 KKKKKK 364
K+K KK
Sbjct: 207 KRKAKK 212
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 36.1 bits (84), Expect = 0.015
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+++K KKK KEEKK K++K+K E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 301 EKRERKRRKKKKK---------RKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
K E+ KK K + +++K+K K++KK K++++K +
Sbjct: 72 TKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 27.6 bits (62), Expect = 9.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 349 KRKKEEKKKKKKKKKKKEKRKK 370
+ +KE+KK K++KK K +K
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEK 116
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 34.3 bits (79), Expect = 0.015
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K + K K K +KE K + K+ + KK + + +K K KK KK K
Sbjct: 6 KTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCK 64
Score = 33.6 bits (77), Expect = 0.032
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K + K K K +K+ + K K K +K + E +K K KK K+
Sbjct: 4 KNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDC 63
Query: 369 KK 370
KK
Sbjct: 64 KK 65
Score = 29.3 bits (66), Expect = 1.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K K KE K KK + + +K K KK++K KK K + K
Sbjct: 21 KEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCK 75
Score = 28.9 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KK+ K K ++ K KK + + +K K KK KK+ KK K +
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT 73
Score = 28.6 bits (64), Expect = 1.9
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 317 KRKKRKEKEKKKKKRK--KKKRKKKRKKKKRKKKKRKKE-------EKKKKKKKKKKKEK 367
+K + + E K+K K KK+ K K K+ K KK E +K K KK +K
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 36.8 bits (86), Expect = 0.015
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 298 LIREKRERKRRKKKKKR-------------KRKRKKRKEKEKKKKKRKKK----KRKKKR 340
LIRE + R K KK+ + +RK +E E+ + +R + R KR
Sbjct: 6 LIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKR 65
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++ + +E K+K K+ + +
Sbjct: 66 GEDDAEELIAEVKELKEKLKELEAALDELE 95
Score = 29.1 bits (66), Expect = 4.5
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK--KKKRKKKKRKKEEKKKK 358
K R+ +++ +KR K + +++RK R+ + + ++ + KE +
Sbjct: 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRAL 63
Query: 359 KKKKKKKEK 367
K+ + E+
Sbjct: 64 KRGEDDAEE 72
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 35.3 bits (82), Expect = 0.017
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+VD + +++E K +K+ +++ K K++ E EK +K+ +K K K ++ + R+
Sbjct: 3 VVDVQKILQESPAGKAAQKQLEKEFK-KRQAELEKLEKELQKLKEKLQKDAATLSEAARE 61
Query: 352 KEEKKKKKKKKKKKEKRKK 370
K+EK+ +KK ++ + K++K
Sbjct: 62 KKEKELQKKVQEFQRKQQK 80
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 37.0 bits (86), Expect = 0.018
Identities = 15/70 (21%), Positives = 37/70 (52%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E+ ERK + ++ +R +E EK+ +K +++ K +R ++ + + + + K
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233
Query: 360 KKKKKKEKRK 369
K+ +KE +
Sbjct: 234 LKELRKELEE 243
Score = 34.7 bits (80), Expect = 0.094
Identities = 14/80 (17%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKR----KKKKRKKKRKKKKRKKKKRK 351
E L+ E ++ + +++ K +R + + E ++ + K K +K ++ ++ R
Sbjct: 192 EDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRL 251
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
+EE ++ +++ ++ EK +
Sbjct: 252 EEELEELQEELEEAEKEIEE 271
Score = 33.1 bits (76), Expect = 0.26
Identities = 9/72 (12%), Positives = 36/72 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+RE+ + + R + ++E E +++ ++ + + K++ K+ + + EE + +
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440
Query: 359 KKKKKKKEKRKK 370
++ ++ + +
Sbjct: 441 LEELNEELEELE 452
Score = 31.2 bits (71), Expect = 0.97
Identities = 12/80 (15%), Positives = 36/80 (45%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
I + E I RER + + + + + + KEK + +++ + ++ ++ +
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
+E K++ ++K + +
Sbjct: 357 EEAKEELEEKLSALLEELEE 376
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 36.4 bits (84), Expect = 0.022
Identities = 11/67 (16%), Positives = 35/67 (52%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ E R+++K R R R + E+ +++ + + + R + R+ ++R ++ + +++
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 362 KKKKEKR 368
+ + R
Sbjct: 61 RSPRSLR 67
Score = 34.9 bits (80), Expect = 0.075
Identities = 10/72 (13%), Positives = 36/72 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
REK + R + +R R+R + + + + + +R +++ ++ + + +++ + + +
Sbjct: 9 REKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRY 68
Query: 360 KKKKKKEKRKKR 371
++ R +R
Sbjct: 69 SSVRRSRDRPRR 80
Score = 34.1 bits (78), Expect = 0.10
Identities = 9/72 (12%), Positives = 34/72 (47%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+RE+ R + + + + ++R + + R ++ R++ ++ R + +R+ + + +
Sbjct: 6 DREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRS 65
Query: 360 KKKKKKEKRKKR 371
+ + + R
Sbjct: 66 LRYSSVRRSRDR 77
Score = 33.7 bits (77), Expect = 0.16
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK---------RKKKKR 350
R RER R+ + R R+R + + ++ R + R++ + R+ + R
Sbjct: 39 RRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDR 98
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
+ +K KK+ K
Sbjct: 99 SPSNQWRKDDKKRSLWDIKP 118
Score = 33.7 bits (77), Expect = 0.17
Identities = 10/72 (13%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 303 RERKRRKKKKKRK---RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+R RR +++ + R R +R+ + + + ++ R + +R+ + + E+ +++
Sbjct: 35 RDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRR 94
Query: 360 KKKKKKEKRKKR 371
+ + + ++
Sbjct: 95 LRDRSPSNQWRK 106
Score = 32.2 bits (73), Expect = 0.47
Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 300 REKRERKRRKKKKKRKRKR----KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ R+ R + + R R R + +E + + +R+ R + + ++ R + +
Sbjct: 21 SERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRR 80
Query: 356 KKKKKKKKKKEKRKKR 371
+ + + ++ +R+ R
Sbjct: 81 RSRSVRSIEQHRRRLR 96
Score = 30.6 bits (69), Expect = 1.6
Identities = 11/79 (13%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 300 REKRERK--------RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
E + R ++ R+R R + + +++ ++ R++ R+ R + +R+ R
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRS 62
Query: 352 KEEKKKKKKKKKKKEKRKK 370
+ ++ + R++
Sbjct: 63 PRSLRYSSVRRSRDRPRRR 81
Score = 29.5 bits (66), Expect = 3.0
Identities = 8/71 (11%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 300 REKRERKRRKKKKKRKRKR-KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R++ + R++ + R R R + R+ +E+ ++ + + +++ + + + + +
Sbjct: 17 RDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRD 76
Query: 359 KKKKKKKEKRK 369
+ +++ + R
Sbjct: 77 RPRRRSRSVRS 87
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 34.6 bits (80), Expect = 0.025
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K++ + K +K KE E + +K +R K RK+ K +K+KKKKKKK+
Sbjct: 32 KEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
Score = 33.0 bits (76), Expect = 0.077
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 27/97 (27%)
Query: 301 EKRERKRRKKKKK-------------RKRKRKKRKEKEKKKKKRKKKKRKKKRKKK---- 343
+K E + +++K+K +K +R K KE K +K++KKK+KK+
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNF 90
Query: 344 ----KRKKKK------RKKEEKKKKKKKKKKKEKRKK 370
R+ K+ RKK E+ KK+ K ++ K
Sbjct: 91 YRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFK 127
Score = 28.4 bits (64), Expect = 3.1
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K +E+EK++K+++ + + +K ++ K K+ K +KEK+KK+
Sbjct: 32 KEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKK 83
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 35.0 bits (81), Expect = 0.026
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+R K+ RKR +++ + K +KK K+ + + ++ +K++K+KK
Sbjct: 45 KRVPKRLRKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKYRKRQKRKK 100
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 35.8 bits (82), Expect = 0.026
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K KR +K +KR ++K + KR+KK + K + ++R + +RK K KK
Sbjct: 203 RKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHKLAKK 253
Score = 34.2 bits (78), Expect = 0.10
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R RK ++ KK +K+ RKK R K+++K K + +++ + ++K K
Sbjct: 194 GTVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHK 249
Score = 32.7 bits (74), Expect = 0.27
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K K+ K+ +K+ +K+ + KR+KK + K + +++ + ++K+ K
Sbjct: 195 TVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHKL 250
Score = 31.6 bits (71), Expect = 0.61
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ RK KR KK +K+ +KK R K KK K K + +E+ + R
Sbjct: 196 VPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNR 243
Score = 31.2 bits (70), Expect = 0.96
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ +K ++ KK +K+ +KK + K+RKK + K + +++ + +RK
Sbjct: 200 RDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDF 247
Score = 30.0 bits (67), Expect = 2.3
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 286 MDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+L V + + I + ++ KK +KR +K+ +++KK + K R ++R + +R
Sbjct: 185 KNLATVSDNGTVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRR 244
Query: 346 KKKKRK 351
K +
Sbjct: 245 KDFHKL 250
Score = 28.5 bits (63), Expect = 7.0
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K KR KK +K+ +KK R K+++K + K + +++ + ++
Sbjct: 203 RKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFH 248
Score = 28.1 bits (62), Expect = 7.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++ K+ KK +K+ RKK + K+ +K K K + ++ R +R
Sbjct: 195 TVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRR 244
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 36.3 bits (83), Expect = 0.027
Identities = 15/76 (19%), Positives = 52/76 (68%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
++ +IL +++ ER R+++++ +R+R +R E+E+ +++R +++R ++ + ++ + + ++
Sbjct: 450 LEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLER 509
Query: 353 EEKKKKKKKKKKKEKR 368
E + ++ + +K +R
Sbjct: 510 ERVDRLERDRLEKARR 525
Score = 33.2 bits (75), Expect = 0.25
Identities = 13/72 (18%), Positives = 47/72 (65%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
I++ + + R +RE + R ++++ +R ++R E+E+ +++R ++ R ++ + + ++++
Sbjct: 454 ILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVD 513
Query: 352 KEEKKKKKKKKK 363
+ E+ + +K ++
Sbjct: 514 RLERDRLEKARR 525
Score = 29.7 bits (66), Expect = 2.8
Identities = 15/73 (20%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 300 REKRERKRRK--KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R ++E RK + K ++KR +R E+E++++ +++ + +R++ +R++ +R++ E+ +
Sbjct: 439 RIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDR 498
Query: 358 KKKKKKKKEKRKK 370
++ + + +R++
Sbjct: 499 LERDRLDRLERER 511
Score = 29.3 bits (65), Expect = 4.2
Identities = 11/65 (16%), Positives = 45/65 (69%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ R +K+ RK + K EKK+ +R +++ +++ ++++ ++ +R++ E+++ ++++ ++
Sbjct: 437 RARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLER 496
Query: 366 EKRKK 370
++ ++
Sbjct: 497 DRLER 501
Score = 28.9 bits (64), Expect = 5.3
Identities = 15/70 (21%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR-KKKRKKKKRKKKKR--KKEEKKKKKK 360
E+KR ++ ++ +R+R +R+ E+ +++R +++R +++R ++ R ++ R + E ++ +
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRL 515
Query: 361 KKKKKEKRKK 370
++ + EK ++
Sbjct: 516 ERDRLEKARR 525
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 35.9 bits (83), Expect = 0.028
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K R RK+K+ ++++ KK E+ KKKKK K K++ + +K +++ +++ K
Sbjct: 274 LVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAK 333
Query: 360 KKKKKKEKRKK 370
+K++KE+ K+
Sbjct: 334 LRKEEKEREKE 344
Score = 33.6 bits (77), Expect = 0.13
Identities = 19/72 (26%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK------KRKKKKRKKEEKKKKK 359
K + ++K K ++++++KE +++K+KKK+ K K++ +K ++ +KE+ K +
Sbjct: 276 KFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLR 335
Query: 360 KKKKKKEKRKKR 371
K++K++EK ++
Sbjct: 336 KEEKEREKEYEQ 347
Score = 33.6 bits (77), Expect = 0.13
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ +++R+ R+K K +K ++++KK +K R +++ KK K K
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKP 125
Score = 33.2 bits (76), Expect = 0.17
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R+++KK RK R +++ K+ K K K K K ++EE K+K + + + ++
Sbjct: 97 REEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPLLKDKMQEEELKRKIRVQMRAQE 156
Score = 32.4 bits (74), Expect = 0.37
Identities = 19/72 (26%), Positives = 41/72 (56%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R +++ ++ + +++ KK + K + +RK+K+ K+++ KKE +++KK
Sbjct: 242 RTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKK 301
Query: 360 KKKKKKEKRKKR 371
KKK+ K K+R
Sbjct: 302 KKKEMAPKVKQR 313
Score = 32.4 bits (74), Expect = 0.38
Identities = 14/72 (19%), Positives = 46/72 (63%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ + +R++K+ K ++++K+ ++++KKKK+ K +++ +K + +++E+
Sbjct: 273 SLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLA 332
Query: 358 KKKKKKKKEKRK 369
K +K++K+ +++
Sbjct: 333 KLRKEEKEREKE 344
Score = 31.7 bits (72), Expect = 0.62
Identities = 23/93 (24%), Positives = 50/93 (53%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
+ + +D ++ E L +R+ KK + K + + KEK+ K++++KK +
Sbjct: 238 KSSSRTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELE 297
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+RKKKK++ + K+ + +K +E+RK++
Sbjct: 298 QRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQ 330
Score = 30.5 bits (69), Expect = 1.5
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 300 REKRERKRRKKKKKRKRKRKKRK---EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
E+R + R+K K +K E+E++KK +K + +++ KK K K K
Sbjct: 70 NEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKS 129
Query: 357 K-----KKKKKKKKEKRKKR 371
K K ++++ KRK R
Sbjct: 130 IYIPLLKDKMQEEELKRKIR 149
Score = 30.5 bits (69), Expect = 1.6
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + ++ K+K R + R + + + R K ++R KK+K+ ++K + KKK K
Sbjct: 136 KDKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKTFK 195
Query: 361 KKKKKE 366
K+ K
Sbjct: 196 PKRAKS 201
Score = 29.4 bits (66), Expect = 2.9
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 23/94 (24%)
Query: 301 EKRERKRRKKKKKRK--------RKRKKRKEKEKKKKKRKK---------------KKRK 337
KRE+K+R+KK R+ + KK +E E KKK + ++ +
Sbjct: 12 TKREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNE 71
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++R++ + K K +K +++++K+
Sbjct: 72 ERREEVREKSKAILLSSQKPFSFYEREEQKKAIL 105
Score = 29.4 bits (66), Expect = 3.7
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 296 EILIREKRERKRRKKKKKRK------------RKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ + E+ +RK R + + ++ + + + +KKK+ +KK K KKK K
Sbjct: 137 DKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKTFKP 196
Query: 344 KRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KR K E+ +K +K+ ++K+ KR
Sbjct: 197 KRAKSIPDFEKLHEKFQKQLAEKKKSKR 224
Score = 28.2 bits (63), Expect = 7.3
Identities = 17/66 (25%), Positives = 45/66 (68%), Gaps = 8/66 (12%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKK--------KRKKKKRKKKRKKKKRKKKKRK 351
+EK +++++KK+ +RK+KK++ K K+ ++ +++RK++ K ++++K+R+
Sbjct: 283 KEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKERE 342
Query: 352 KEEKKK 357
KE +++
Sbjct: 343 KEYEQE 348
Score = 28.2 bits (63), Expect = 7.7
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRK-KKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ + +R++ +EK K +K +R+++K+ RK +++ KK K K
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAK 124
Score = 27.8 bits (62), Expect = 8.9
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ +R++ ++ K +K +++++KK ++ + +++ KK K K
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKP 125
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 35.9 bits (83), Expect = 0.030
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 271 VSFHHVN-LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK 329
VSF H F +D + LI E E ++ +R + RK +++
Sbjct: 214 VSFSHDREREPGFP---------LDPDELIAEV-EAIANQRMIERCKNRKAKRDP--NGT 261
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +K KR+K+ RK + R +E + + + + + R
Sbjct: 262 FQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPR 303
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 35.9 bits (83), Expect = 0.030
Identities = 9/76 (11%), Positives = 31/76 (40%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ L ++ + + ++ E++ ++ K + ++RKK + +
Sbjct: 163 IDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSAD 222
Query: 355 KKKKKKKKKKKEKRKK 370
+KK ++ + + + K
Sbjct: 223 QKKLEELRANESRLKN 238
Score = 31.6 bits (72), Expect = 0.71
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK---KKRKKKKRKKKKRKKEEK 355
+R + ++ + +R ++ + + ++RKK + + +K+ ++ R E +
Sbjct: 176 VRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESR 235
Query: 356 KKKKKKKKKKEKRKKR 371
K + + K R
Sbjct: 236 LKNEIASAEAAAAKAR 251
Score = 31.2 bits (71), Expect = 0.96
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 301 EKRERKRRKKKKKRKRKRKKRK-EKEKKKKKRKKKKRKKKRKKKKRK--------KKKRK 351
E+R ++ + + +RK+ + E ++K ++ + + K + K R+
Sbjct: 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252
Query: 352 KEEKKKKKKKKKKKEKRKK 370
+ + + + K+
Sbjct: 253 AAAAAEAAAARARAAEAKR 271
Score = 30.5 bits (69), Expect = 1.7
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ ID + T + R ++ + ++R ++ K + +++K K +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK-KTLAQLNSEL 219
Query: 347 KKKRKKEEKKKKKKKKKKKE 366
+KK E+ + + + K E
Sbjct: 220 SADQKKLEELRANESRLKNE 239
Score = 28.9 bits (65), Expect = 4.5
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 303 RERKRRKKKKKRKRKR----KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK-- 356
R R K K+ + E+ + +++ ++ K + ++RKK +
Sbjct: 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216
Query: 357 --KKKKKKKKKEKRKK 370
+KK +E R
Sbjct: 217 SELSADQKKLEELRAN 232
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 34.6 bits (80), Expect = 0.031
Identities = 12/67 (17%), Positives = 42/67 (62%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ R+K +K +K+++E+E+++ + ++ +++ + K+ + K EK+++ ++K+K
Sbjct: 85 KWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQK 144
Query: 365 KEKRKKR 371
+ +++
Sbjct: 145 EILKEQM 151
Score = 33.8 bits (78), Expect = 0.052
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K RK K+++++ +E+E + ++ ++++ + +K+ K KR+K + ++K+K+ K
Sbjct: 89 KVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Query: 366 EKRKKR 371
E+ K
Sbjct: 149 EQMKML 154
Score = 29.2 bits (66), Expect = 2.3
Identities = 13/61 (21%), Positives = 39/61 (63%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++L +K+E++ ++++ + + ++ ++ +K K +++KR++ +RK+K+ KE+
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQM 151
Query: 356 K 356
K
Sbjct: 152 K 152
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 35.8 bits (83), Expect = 0.031
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
D +S+ + VD ++ + +R+K + + + KR E K+ K K +K+ K
Sbjct: 12 DLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKI 71
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ KK K+ +++ + K + E + K
Sbjct: 72 EEIKKELKELKEELTELSAALKALEAELQDK 102
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 35.8 bits (83), Expect = 0.032
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKK-----------KKRKKKKRKKEEKKKKKKKKKKK 365
+ + +++K++ K+K KKK KK +K ++ K+ KKKKKKKKKK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKK 66
Query: 366 EKRKK 370
+K+
Sbjct: 67 KKKNL 71
Score = 35.5 bits (82), Expect = 0.047
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 300 REKRERKRRKKKKKRKRKRKKRK----------EKEKKKKKRKKKKRKKKRKKKKRKKKK 349
E +++K++ K+K K+K KK K + + + + K+ K+KKKK+KKKK
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
+K +
Sbjct: 68 KKNLGEAYDLAYDLPVVWSSAA 89
Score = 34.7 bits (80), Expect = 0.081
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKK---------KRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + K+++++ K+K +KK KK KK + + ++ + K+ +KK++KKKKK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKK 66
Query: 360 KKKKKKEKRK 369
KKK E
Sbjct: 67 KKKNLGEAYD 76
Score = 32.0 bits (73), Expect = 0.56
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 18/65 (27%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKK------------------EEKKKKKKKKKKKE 366
E + + K++K++ K+K K+K KK KK E K+ KKKKKK+
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 367 KRKKR 371
K+KK+
Sbjct: 64 KKKKK 68
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK---------------KKKKKKKKKKE 366
+ + + +++K++ K++ KK+ KK +K + + K+ KKKK+
Sbjct: 2 MNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKK 61
Query: 367 KRKK 370
K+KK
Sbjct: 62 KKKK 65
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 33.3 bits (76), Expect = 0.032
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-KKRKKKKRKK 352
D E LI E E ++++ + R+ R+ +E E++ K ++ K+ ++ +K +K R++
Sbjct: 10 DAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREE 69
Query: 353 EEKKKKKKKKKKKEKR 368
EK+ + K K KEK
Sbjct: 70 GEKEIEAMKSKAKEKI 85
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 35.8 bits (82), Expect = 0.033
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+++E K+ +K ++ R K K K + K K + K+K +E KK
Sbjct: 238 QEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKAL 297
Query: 361 KKKKKEKR 368
K +KK +
Sbjct: 298 KMEKKAIK 305
Score = 33.1 bits (75), Expect = 0.21
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R K +++ K+ KK ++ ++ + K K K K + + + + KKK K
Sbjct: 231 RIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAK 290
Query: 360 KKKKKKEKRKKR 371
+ KK K +K+
Sbjct: 291 EVMKKALKMEKK 302
Score = 31.9 bits (72), Expect = 0.53
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE R + K K + K + E E + +KK ++ K+ K KK K K
Sbjct: 250 REAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAK 309
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 35.6 bits (82), Expect = 0.035
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR-KKKKRKKKKRKKEEKKKKK 359
K+ + K+ K + K + K+ KK KKK K+KK KKE +
Sbjct: 181 AKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTV 240
Query: 360 KKKKKKEKRKKR 371
K++ ++E K+
Sbjct: 241 KEESEEESGKRD 252
Score = 34.0 bits (78), Expect = 0.11
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K +K + ++ +K + + K ++ +K KKK K+KK+KKE
Sbjct: 177 KVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
Query: 369 KK 370
+
Sbjct: 237 ES 238
Score = 33.7 bits (77), Expect = 0.14
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K K +K + ++ +K K K K+ KK KKK K+KK++K
Sbjct: 175 EVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKE 234
Query: 369 KK 370
Sbjct: 235 AS 236
Score = 33.7 bits (77), Expect = 0.15
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK---------KKK 359
KK+KK + ++E E++ KR + + + + + E K + +
Sbjct: 229 KKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETE 288
Query: 360 KKKKKKEKRKKR 371
+K+K+K KR K+
Sbjct: 289 EKEKEKRKRLKK 300
Score = 33.3 bits (76), Expect = 0.21
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ K K ++ +K KKK K+K K+KK + KEE +++
Sbjct: 191 TTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEK-KEKKEASESTVKEESEEESG 249
Query: 361 KKKKKEK 367
K+ +
Sbjct: 250 KRDVILE 256
Score = 32.9 bits (75), Expect = 0.25
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK---------------KKRKKKRKKKKR 345
+ E K+K+KRKR +K +++++ ++ KK ++K+
Sbjct: 282 DSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEE 341
Query: 346 KKKKRKKEEKKKKKKKKKKK 365
++ +++ KKK
Sbjct: 342 VTVSPDGGRRRGRRRVMKKK 361
Score = 32.5 bits (74), Expect = 0.36
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K K KR +K K+K K KK+K++ + +E+ +++ K+
Sbjct: 197 EGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILE 256
Query: 369 KKR 371
+
Sbjct: 257 DES 259
Score = 31.7 bits (72), Expect = 0.64
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K KK + K+ ++ + K K K+ KK ++K K+KK+KK+ +
Sbjct: 178 VKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASE 237
Query: 368 RKK 370
Sbjct: 238 STV 240
Score = 31.7 bits (72), Expect = 0.64
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ KK K+K KEKK+KK + K+ +++ K+ E++ +
Sbjct: 204 AASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPT 263
Query: 361 KKKKKEK 367
+ E
Sbjct: 264 GLDEDED 270
Score = 30.2 bits (68), Expect = 1.9
Identities = 13/81 (16%), Positives = 24/81 (29%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
I + + R K ++ K + + K K K+ +
Sbjct: 129 PITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTS 188
Query: 351 KKEEKKKKKKKKKKKEKRKKR 371
K+ +K + K K KR
Sbjct: 189 KETTTEKTEGKTSVKAASLKR 209
Score = 29.4 bits (66), Expect = 3.4
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKE-----KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
EK E K K KR K+ +KK K++K+KK + K+ +++ K +
Sbjct: 194 EKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDV 253
Query: 356 KKKKKKKKKKEKRKKR 371
+ + + +
Sbjct: 254 ILEDESAEPTGLDEDE 269
Score = 28.6 bits (64), Expect = 6.2
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
KR+ + + + E E K + ++ +K+K K+K+ KK + + +
Sbjct: 249 GKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDED 308
Query: 361 KKK 363
++
Sbjct: 309 EEM 311
Score = 28.3 bits (63), Expect = 8.1
Identities = 9/61 (14%), Positives = 31/61 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++E+ E + K+ + + + ++ + + + K ++ ++ ++K K++ K+ K
Sbjct: 240 VKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLK 299
Query: 359 K 359
K
Sbjct: 300 K 300
Score = 27.9 bits (62), Expect = 9.9
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
DVI++ E + + + K +R +E+ ++K+K K+K+ KK + + ++
Sbjct: 252 DVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEM 311
Query: 350 R---------------------KKEEKKKKKKKKKKKEKRKKR 371
KKEE+K++ +R+ R
Sbjct: 312 EIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGR 354
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 35.7 bits (83), Expect = 0.036
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ E+ R+ +++ K K+ E EKK ++K KK KK K ++ ++ + E +
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Query: 357 K 357
+
Sbjct: 123 E 123
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++ R+ ++ KE E +K+ + +K+ ++K KK KK + +E ++ + + +E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 31.9 bits (73), Expect = 0.52
Identities = 13/69 (18%), Positives = 37/69 (53%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ + E +RE+ E + ++ + +++ ++K EKK KK KK + ++ ++ + + +
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Query: 352 KEEKKKKKK 360
+ E + +
Sbjct: 123 EPEPPLRPR 131
Score = 29.9 bits (68), Expect = 2.2
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ R+E E++ K+ + +K + +KK +KK +K +K K ++ ++
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELL 117
Score = 28.8 bits (65), Expect = 4.8
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+E ++ ++ K+ +K + KK KK +K KK K ++ +
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 35.6 bits (82), Expect = 0.038
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK-- 346
I+V+++ + ++ E+K +K K + K +KE E++ ++ K+++R KK + +K
Sbjct: 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
Query: 347 --KKKRKKEEKKKKKKKKKKKEKRK 369
K +K+ E ++ K+KK K K
Sbjct: 573 ALKALKKEVESIIRELKEKKIHKAK 597
Score = 33.6 bits (77), Expect = 0.17
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKK----RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
E + E +ER+R KK + K ++ +KE E ++ K+KK K ++ K + +
Sbjct: 549 EQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKL 608
Query: 352 KEEKKKKKKKKKKKEKRK 369
KE K+K +K + K
Sbjct: 609 KETKQKIPQKPTNFQADK 626
Score = 31.3 bits (71), Expect = 0.86
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E +K + ++ K+R+R +K EKE ++ + KK + ++ ++KK K +E
Sbjct: 540 EQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
Query: 356 KKKKKKKKKKEKRKK 370
K + K KE ++K
Sbjct: 600 KSIEDLVKLKETKQK 614
Score = 30.6 bits (69), Expect = 1.8
Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK-KKKRKKKRKKKKRKKKKRK 351
+ I+ + K K++ ++ EKE ++K +K K++ K KK +++ +
Sbjct: 494 IPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEME 553
Query: 352 K-EEKKKKKKKKKKKEKRKK 370
+ +E+++ KK + +KE ++
Sbjct: 554 ELKERERNKKLELEKEAQEA 573
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 35.5 bits (81), Expect = 0.042
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K ++K KRK R EK + K +R R K KK+ + + +K E K ++ +K
Sbjct: 379 KSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRK 434
Score = 30.1 bits (67), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRK----KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K EK+ K+K R +K R K R+ + K KKR + KK + K +R ++
Sbjct: 379 KSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRK 434
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 34.8 bits (80), Expect = 0.045
Identities = 6/56 (10%), Positives = 25/56 (44%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+++ K + + ++ +++ KK+ + +K ++ + K K +++
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTP 155
Score = 34.4 bits (79), Expect = 0.055
Identities = 9/62 (14%), Positives = 29/62 (46%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++ E + +++ K + + +R ++ K++E+ +K ++ + K K +
Sbjct: 90 ELEEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPR 149
Query: 352 KE 353
+E
Sbjct: 150 EE 151
Score = 32.1 bits (73), Expect = 0.30
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR-KKKKRKKKKRKKEEK 355
L E E R++ + + R + +R E++ KK++ +K ++ + + K +
Sbjct: 90 ELEEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPR 149
Query: 356 KK 357
++
Sbjct: 150 EE 151
Score = 31.4 bits (71), Expect = 0.55
Identities = 8/52 (15%), Positives = 26/52 (50%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RK+ + K + + ++ +++ KK+ + +K ++ R K + +++
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 29.4 bits (66), Expect = 2.0
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK+ + K + + ++ +++ KK++ +K ++ + K K +
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPRE 150
Score = 28.7 bits (64), Expect = 3.9
Identities = 6/44 (13%), Positives = 21/44 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ + +R +++ K++ + EK ++ + K K +++
Sbjct: 109 RVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEV 152
Score = 27.9 bits (62), Expect = 7.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E+E + RK+ K R + +R +++ KK E+ +K E+
Sbjct: 92 EEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATA 140
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 33.4 bits (77), Expect = 0.045
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 12/57 (21%)
Query: 323 EKEKKKKKRKKKKR------------KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++E+++K+ K+ R + RK K +++ + + K+K+KKKKKKKE
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKEL 88
Score = 33.4 bits (77), Expect = 0.051
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 20/72 (27%)
Query: 320 KRKEKEKKKKKRK-------------KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK-- 364
KR+E+EK++ K + RK K +++ + K K++EKKKKKKK+ +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDF 91
Query: 365 -----KEKRKKR 371
+EK+K+
Sbjct: 92 YRFQIREKKKEE 103
Score = 32.6 bits (75), Expect = 0.092
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK-------RKKKKRKK----KKRKKEEKKK 357
+ +K K R++ E + K+K++KKKK+K+ ++KK+++ +K+ +E+KK+
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 35.5 bits (82), Expect = 0.046
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V+ E+ E+ E K KK+++ K K+ + E+++K+ KKK K KK K+ +
Sbjct: 31 VEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKK------KTKKVKETTTEW 84
Query: 353 EEKKKKK 359
E K K
Sbjct: 85 ELLNKTK 91
Score = 34.4 bits (79), Expect = 0.084
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
E+E+++K+ KK++ +K K++ ++ +KEEKKKK KK K+
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 34.4 bits (79), Expect = 0.093
Identities = 17/51 (33%), Positives = 36/51 (70%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K EKE ++ +++K +KK +++K K+ + +E+++K++KKKK +K K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
Score = 33.2 bits (76), Expect = 0.23
Identities = 14/43 (32%), Positives = 32/43 (74%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
E+E++K+++K+++ K K+++ +++ K+E+KKK KK K+
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81
Score = 31.3 bits (71), Expect = 0.80
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K+ ++E++++K +KK+ ++K K+ + + +++E+KKKK KK K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 31.3 bits (71), Expect = 0.93
Identities = 16/50 (32%), Positives = 34/50 (68%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE ++++ +K+++K++ +K K+++ +EE+K++KKKK KK K
Sbjct: 33 KEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 29.4 bits (66), Expect = 4.0
Identities = 15/49 (30%), Positives = 36/49 (73%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EKE +K+ +++ ++K +KK+ ++K KEE+ ++++K++K+K+ K+
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKK 76
Score = 29.0 bits (65), Expect = 4.6
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L EK K +++ + K +K++E+EK K ++ ++++++KK+K KK K+ +
Sbjct: 25 LWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEW 84
Query: 358 KKKKKKK 364
+ K K
Sbjct: 85 ELLNKTK 91
Score = 29.0 bits (65), Expect = 4.9
Identities = 13/44 (29%), Positives = 29/44 (65%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
E+EK++KK +++K K ++ +++K +K++K KK K+ +
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEW 84
Score = 28.6 bits (64), Expect = 6.3
Identities = 13/49 (26%), Positives = 33/49 (67%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++++KE+E+K ++++ +++ K++K+KK K+ KE + + K K
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 35.4 bits (80), Expect = 0.050
Identities = 21/77 (27%), Positives = 49/77 (63%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ E + K+ ++ ++ + + K++ +E+E K+ K ++++ +K+++KK+ KK + E
Sbjct: 87 EAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAE 146
Query: 354 EKKKKKKKKKKKEKRKK 370
+KK+K K +K EK +K
Sbjct: 147 KKKEKAVKAEKAEKAEK 163
Score = 34.7 bits (78), Expect = 0.083
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + RR + + +KR ++ + K+ K ++ + +K ++K++ +K + KK+EK K
Sbjct: 96 KAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKA 155
Query: 360 KKKKKKEKRKK 370
+K +K EK KK
Sbjct: 156 EKAEKAEKTKK 166
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR-KKKKRKKEEKKK 357
I + E +++ KK K +R E E KK+ ++++ K+ + +++R +K++ KKE K
Sbjct: 82 IAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLK 141
Query: 358 KKKKKKKKEKRKK 370
K + +KKKEK K
Sbjct: 142 KLQAEKKKEKAVK 154
Score = 33.5 bits (75), Expect = 0.19
Identities = 17/71 (23%), Positives = 46/71 (64%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ E+ ++ +KKK +++ K E E+K +K +++ +R + + KK+ ++EE K+ K
Sbjct: 65 QQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKA 124
Query: 361 KKKKKEKRKKR 371
++++ +K +++
Sbjct: 125 EQERIQKEQEK 135
Score = 33.1 bits (74), Expect = 0.27
Identities = 22/92 (23%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
++AFA S++L + E + + ++++ +++ K + ++K +K +K+ R+ + K
Sbjct: 52 KEAFA-SLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAK 110
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KR ++ + K+ K E+++ +K+++KK+ KK
Sbjct: 111 KRAAQEEEHKQWKAEQERIQKEQEKKEADLKK 142
Score = 32.0 bits (71), Expect = 0.56
Identities = 18/74 (24%), Positives = 47/74 (63%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L + ++ ++ KK +K+K +++ K+ E ++K KK +K+ ++ + + KKR +E++
Sbjct: 60 LTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEH 119
Query: 358 KKKKKKKKEKRKKR 371
K+ K +++ +K++
Sbjct: 120 KQWKAEQERIQKEQ 133
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K E++R +K++++K K+ + EKKK+K K ++ +K +K K+ EE+ KK
Sbjct: 123 KAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKK 181
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 34.4 bits (79), Expect = 0.051
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + E R ++K+K R++ + E K K + + +K+KR++K R +E+K++
Sbjct: 101 LNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKER 160
Score = 34.4 bits (79), Expect = 0.052
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
Query: 239 PLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLID-VIVDTEI 297
L +M+ N+ ++++ RR+A E AK+M + +I D
Sbjct: 100 SLNQMLEENREQQKEKEARRQAREAE-----------------IAKNMAKMPQMIADWRA 142
Query: 298 LIREKRERKRRKKKKKRKRKRKKRK----------EKEKKKKKRKKKKRKKKRKKKKRKK 347
R++ ++ R K++K + + R+ + ++ ++K+K+ KKK K+ KR++
Sbjct: 143 QKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRRE 202
Query: 348 KKRKKEEKKKKK 359
K+ K+
Sbjct: 203 KEEKRMAALVAA 214
Score = 34.0 bits (78), Expect = 0.083
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 32/99 (32%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKK--------KKRKKKKRKKKRKKKKRKKK-------- 348
R+++K+K+ R++ R+ K K + +K+K+ +K R K+RK++
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREH 168
Query: 349 ----------------KRKKEEKKKKKKKKKKKEKRKKR 371
++K++E+KKK K+ K++EK +KR
Sbjct: 169 FGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKR 207
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 33.5 bits (77), Expect = 0.054
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
KK + + R + K+KK ++ +K+ K +RKK + K+K + +KK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 33.5 bits (77), Expect = 0.056
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
KK + K + + +KKK RK +K K R+KK R K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 31.5 bits (72), Expect = 0.24
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 301 EKRERKRRKK-KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
E + R R KK+K RK RKE K R+KK R K++ K KKK
Sbjct: 88 EPKYRLIRLGLIKKKKAGRKARKEL----KNRRKKVRGKEKTKVSGKKK 132
Score = 30.4 bits (69), Expect = 0.68
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+K + K R + KK+K ++ +K K +R KK R KE+ K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRR-KKVRGKEKTKVSGKKK 132
Score = 30.0 bits (68), Expect = 0.84
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
KK+K RK +K K +RKK K+K K KK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKK 131
Score = 27.7 bits (62), Expect = 5.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRK-KEEKKKKKKKKKKKEKRKKR 371
KK + K R + K+KK RK ++E K ++KK + KEK K
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVS 128
Score = 26.9 bits (60), Expect = 9.7
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
LI++K+ ++ +K+ K +RK+ + KEK K K+K
Sbjct: 98 LIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 33.2 bits (76), Expect = 0.057
Identities = 14/77 (18%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK-RKK 352
+ I E +E + K+ R+ R+ +E E++ +K ++ ++ R++ + + ++ +
Sbjct: 18 SADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAE 77
Query: 353 EEKKKKKKKKKKKEKRK 369
EK+ K E +
Sbjct: 78 AEKEASAILSKAAEGKV 94
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 32.6 bits (75), Expect = 0.058
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
++++ K ++K E KK+KK+K KKKR +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 32.2 bits (74), Expect = 0.075
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+E+E+K+ K+K + KKKK++K K+K++E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 32.2 bits (74), Expect = 0.096
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 323 EKEKKKKKR------KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E+E K K+R K +++ K+ K+K + KKKKK+K KKK
Sbjct: 11 EEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 0.48
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
++ +++ K+K KKK+K+K +KK+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 28.0 bits (63), Expect = 2.4
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ +++++++ K++ + +KKKKRK ++K+ +
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 34.6 bits (80), Expect = 0.059
Identities = 13/32 (40%), Positives = 27/32 (84%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKR 331
E+ ER+RR++K++RK++ K+RK++EK+ ++
Sbjct: 178 LEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 34.6 bits (80), Expect = 0.067
Identities = 15/56 (26%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++++R+ ++R+ E + +R ++ +++R++K+R RKK++K++K+++K+ EK
Sbjct: 158 RQQQRQFEQRRNAELAETQRLEEAERRRREEKER----RKKQDKERKQREKETAEK 209
Score = 31.9 bits (73), Expect = 0.39
Identities = 12/65 (18%), Positives = 45/65 (69%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
L++V+ + E+ +++R+ +++ + ++ +E E+++++ K++++K+ +++K+R+K
Sbjct: 145 LLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREK 204
Query: 348 KKRKK 352
+ +K
Sbjct: 205 ETAEK 209
Score = 30.8 bits (70), Expect = 1.1
Identities = 16/63 (25%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEK-KKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
E+L E+ R+++++ +R+ + E ++ ++ +R++++ K++RKK+ +++K+R+KE
Sbjct: 147 EVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKET 206
Query: 355 KKK 357
+K
Sbjct: 207 AEK 209
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/50 (24%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRK---KKKRKKEEKKKKKKKKKKKEKRKK 370
E ++++R+ ++R+ + ++ ++R++EEK+++KK+ K++++R+K
Sbjct: 155 AELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREK 204
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 34.7 bits (80), Expect = 0.061
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
R+ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 33.1 bits (76), Expect = 0.18
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
RR K K+ KK + KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 33.1 bits (76), Expect = 0.20
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
E++ K KK KK K KK KK KK K KK +K
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 32.4 bits (74), Expect = 0.31
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 298 LIREKRERKRR-KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
L+ E+R + KK K+ K +K KK +K K KK KK
Sbjct: 251 LLAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 31.2 bits (71), Expect = 0.71
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+R K KK KK K +K KK KK K +K K+
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 31.2 bits (71), Expect = 0.73
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + K+ KK + KK KK K+ K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.8 bits (70), Expect = 1.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
++ K K+ +K K KK KK K+ K +K K+
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
R+ K +K K+ K KK KK KK K K+ KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.1 bits (68), Expect = 1.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R+ K K+ KK K +K KK KK + K+ KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 29.7 bits (67), Expect = 2.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+R K +K +K K KK +K +K + KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 29.3 bits (66), Expect = 3.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+ + KK K+ + KK KK KK K +K KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 28.5 bits (64), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+R + +K KK K K+ +K +K K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 28.5 bits (64), Expect = 5.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
++ + +K +K K KK ++ KK K KK +K
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 27.7 bits (62), Expect = 9.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+R + +K +K + KK KK KK K K+
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKA 293
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 34.2 bits (79), Expect = 0.066
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K+ + ++ ++ K++ + KKE KKKK
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.7 bits (75), Expect = 0.19
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E K K ++ ++ + K++ E +KK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K K + E+ + K+++ + KK+ +KKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 2.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K ++ ++ + KEE+ + +KK+ K+K
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 28.5 bits (64), Expect = 4.6
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
K + ++ + K+ + E +KK+ KKKK
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 31.8 bits (73), Expect = 0.067
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
RKRK+ +R + KK+KK +K ++ K +++ +++ + K + +
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGYGGETTGIKTNVVRSVKL 76
Score = 26.4 bits (59), Expect = 5.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K K +KRKK R + + KKRKK EK K+ K +++ R++
Sbjct: 14 EKNKGLTRKRKKDR--RNPRVKKRKKYEKAVKRLKSQRRVVREED 56
Score = 26.1 bits (58), Expect = 7.5
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 306 KRRKKKKK--RKRKRKKRKEKEKKKKKRKKKKRKKKR 340
++RKK ++ R +KRKK ++ K+ K +++ R++
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDG 57
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 34.1 bits (78), Expect = 0.068
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
A +M +I VI+ +L+R R+ +R+K + K++ + ++ K++KKKK KKK+
Sbjct: 45 AGAMTVILVILVV-VLVRYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSP 103
Query: 343 K 343
K
Sbjct: 104 K 104
Score = 32.9 bits (75), Expect = 0.19
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
R R+ ++K+ + K++ ++ ++ K++KKK+ KKK+ K
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 32.1 bits (73), Expect = 0.30
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 314 RKRKRKKRKEKEKKKKKR--KKKKRKKKRKKKKRKKKKRKK 352
R+ +RKK + KK+ + + K++KKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 31.4 bits (71), Expect = 0.53
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 336 RKKKRKKKKRKKKKRKKE------EKKKKKKKKKKKEKRKK 370
R+ +RKK + KK ++ E K+KKKKK KK+K K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 7.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R+ +++K + KK+ + + K+K+KKK +KK+ K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 32.3 bits (74), Expect = 0.071
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKK--KKRKKKKRKKKRKKKKRKKK- 348
E + + RR ++ R++K+KK+K K+K K RKK++ +++ K+ K K
Sbjct: 18 EEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKPDSKY 77
Query: 349 ---KRK 351
KR+
Sbjct: 78 TGRKRR 83
Score = 31.5 bits (72), Expect = 0.13
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K ++ ++ +RKKKK+KK +KK K+ +KKE+ ++R
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRR 67
Score = 30.3 bits (69), Expect = 0.29
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
E+ K R+ +R +++KKKK+K KK+ KE +KK++ +++
Sbjct: 25 EQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRR 67
Score = 30.3 bits (69), Expect = 0.29
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + ++ R+KKK+KKK KKK ++ RKKE+ +++ K+
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK----KR 345
D +D + R + +R+KKKKK+ +K K ++ +KK++ +++ ++ K K KR
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKK-KSKEWILRKKEQMRRRGKEVKPDSKYTGRKR 82
Query: 346 KKK 348
+ +
Sbjct: 83 RPR 85
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 32.9 bits (75), Expect = 0.073
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKK 344
EK KKKKK+ KK +K K+ KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKK 119
Score = 32.5 bits (74), Expect = 0.10
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKK 360
K KKKK+K KK KK +K KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.2 bits (73), Expect = 0.16
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKK 349
E +K +KKKK+ KK KK K+ KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 31.8 bits (72), Expect = 0.21
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 344 KRKKKKRKKEEKKKKKKKKKKK 365
K KKKK+K ++ KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 0.25
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 347 KKKRKKEEKKKKKKKKKKKE 366
KKK+KK +K KK KK KK+
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 0.28
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKK 347
EK KKK+KK K+ KK KK +K
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 0.29
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKK 363
+K K+KKKK KK +K KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.0 bits (70), Expect = 0.39
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRK 341
+K K+K+KK KK KK K+ K+
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.56
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKK 343
K K+KKKK +K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.57
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKK 349
K K+KKKK KK +K KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEK 355
K +KKK+K KK KK K+ ++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.64
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKE 353
K KK+KKK KK K+ KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.67
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 338 KKRKKKKRKKKKRKKEEKKK 357
KK+KKK +K KK KK KK
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.74
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 349 KRKKEEKKKKKKKKKKKEKRKK 370
K KK++KK KK KK KK +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.77
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKK 358
K K+KKKK KK K+ K+ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.79
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
+K +KKKKK KK KK K+
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSS 117
Score = 29.8 bits (67), Expect = 0.88
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 315 KRKRKKRKEKEKKKKKRKKKK 335
K K+KK+K K+ KK K+ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 29.8 bits (67), Expect = 0.94
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEK 326
+ E E+ ++KKKK +K K+ K+ K+
Sbjct: 88 HPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.96
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 343 KKRKKKKRKKEEKKKKKKKKKK 364
K +KKKK+ K+ KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKK 348
E +K KK+KKK +K K+ KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 345 RKKKKRKKEEKKKKKKKKKKKEK 367
+K K+KK++ KK KK KK +K
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKK 119
Score = 29.5 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKK 356
K KKK+KK K+ KK +K +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 346 KKKKRKKEEKKKKKKKKKKKEK 367
K KK+KK+ KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEE 354
+K K+KKK+ KK +K KK K++
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRK 351
K KKKK+K K+ KK +K K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 3.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 354 EKKKKKKKKKKKEKRKKR 371
EK KKKKKK KK K+ K+
Sbjct: 98 EKPKKKKKKSKKTKKPKK 115
Score = 27.9 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 309 KKKKKRKRKRKKRKEKEKKK 328
KKKKK+ +K KK K+ KK
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 3.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKK 338
K KK+K+K KK KK KK +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKK 330
+K KK+K+K KK K+ +K KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKK 119
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKK 359
+K +KKKK+ KK +K ++ KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKK 334
K K+K+KK K+ +K KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 351 KKEEKKKKKKKKKKKEKRKKR 371
K ++KKKK KK KK +K K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 27.5 bits (61), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 310 KKKKRKRKRKKRKEKEKKKK 329
KKKK+K K+ K+ +K KK
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 348 KKRKKEEKKKKKKKKKKKEKRK 369
K +KK++K KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.2 bits (60), Expect = 6.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKK 330
K KKK+K+ +K +K K+ KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|224872 COG1961, PinR, Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair].
Length = 222
Score = 34.0 bits (78), Expect = 0.077
Identities = 9/88 (10%), Positives = 34/88 (38%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
L + + + ++ + + ER+ ++ + + ++ KE + K K+
Sbjct: 99 LAENIFDTSSPMGRLMLMILAALAEFERELISERTRAGIEAARKAGKEGGRPPGYKIKKG 158
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+K+ +++ +R + + +
Sbjct: 159 RKKAEEQAAAVRRLLADGLGSYSEIARA 186
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 32.4 bits (74), Expect = 0.078
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 301 EKRERKRRKKK--KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
EKR KR +++ K R+++ K KE E++++ + K+R+ +++K+R +K K KK
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMH-AKK 89
Query: 359 KKKKKKKEKRKK 370
++ K++EKR K
Sbjct: 90 VERLKRREKRNK 101
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+++++E +R+++ + K +R ++EKE+ +K K KK + K+R+K+ +
Sbjct: 50 LKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVERLKRREKRNKL 102
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 34.5 bits (80), Expect = 0.080
Identities = 17/70 (24%), Positives = 41/70 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++RR + ++ +R+ +R+E +K + KK + KK+K K K ++K+++
Sbjct: 68 ERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127
Query: 361 KKKKKEKRKK 370
++ E+R++
Sbjct: 128 EELIAEQREE 137
Score = 31.8 bits (73), Expect = 0.57
Identities = 14/79 (17%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK-----KKKRKKKRKKKKRKKKKRKK 352
L+R++ K+ ++ ++ + +KE + K++ K++ K R + +R+ K+R+
Sbjct: 17 LLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRN 76
Query: 353 EEKKKKKKKKKKKEKRKKR 371
E ++ +++ +++E ++
Sbjct: 77 ELQRLERRLLQREETLDRK 95
Score = 31.0 bits (71), Expect = 0.98
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 297 ILIREKRERKRRKKKKKRKRK---RKKRKEKEKK-KKKRKKKKRKKKRKKKKRKKKKRKK 352
I+ K+E + KK+ + K K R E E++ K++R + +R ++R ++ + RK
Sbjct: 37 IIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKM 96
Query: 353 EEKKKKKKKKKKKE---KRKKR 371
E KK++ +KKE K++
Sbjct: 97 ESLDKKEENLEKKEKELSNKEK 118
Score = 29.1 bits (66), Expect = 4.8
Identities = 12/69 (17%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 300 REKRER-KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+E+R +R +++ ++ + RK + KK+ +K++K+ K++ ++++E ++
Sbjct: 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131
Query: 359 KKKKKKKEK 367
+++++ E+
Sbjct: 132 AEQREELER 140
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 34.3 bits (79), Expect = 0.082
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+R +K K + K K K KK KK RK + +
Sbjct: 178 SRRAKKAAKLSSTASSGDE---KSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
Score = 34.0 bits (78), Expect = 0.086
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+R KK K EK K K KK KK RK
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 32.4 bits (74), Expect = 0.34
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
+ +R +K K +K + + KK KK RK
Sbjct: 170 LLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 32.0 bits (73), Expect = 0.44
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEK-------------EKKKKKRKKKKRK 337
VD+ I + K +RK++KK + + K K +R
Sbjct: 122 KTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSSTPNSSRPSTPHLLKAKEGPSRRA 181
Query: 338 KKRKK-KKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK K +K K K KK K+ RK
Sbjct: 182 KKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 29.7 bits (67), Expect = 2.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ K K + + KK KK +RK +E K+K++KK ++
Sbjct: 102 KKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESAT 150
Score = 28.9 bits (65), Expect = 3.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
RE ++ KK+ + K + E+ KK KK ++K K+ K+K+RKK ++ +
Sbjct: 95 RELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPES 154
Query: 363 K 363
Sbjct: 155 S 155
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.8 bits (78), Expect = 0.082
Identities = 13/64 (20%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKK--KRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ K K + +K K++ ++ K+R + + + K KK + + ++R + ++ K+ +K+ K+
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 367 KRKK 370
+ +
Sbjct: 122 LKAE 125
Score = 32.6 bits (75), Expect = 0.17
Identities = 16/66 (24%), Positives = 38/66 (57%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + + K KK+ + +++ E + + +K KK + + + + + ++ K+ ++E KK K +
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Query: 362 KKKKEK 367
+K EK
Sbjct: 126 LEKYEK 131
Score = 30.7 bits (70), Expect = 0.84
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK---KKKKK 362
+ K K R K KK E+ K++ + + +K +K ++ +++ + E+ K K+ KK
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 363 KKKEKRKKR 371
K E K
Sbjct: 122 LKAELEKYE 130
Score = 28.7 bits (65), Expect = 3.3
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 301 EKRERKRR----KKKKKRKRKRKKRKEK--EKKKKKRKKKKR-----KKKRKKKKRKKKK 349
+ K R KK+ + ++R + EK KK R++ + ++ ++ +K KK
Sbjct: 63 ALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKL 122
Query: 350 RKKEEKKKKKKKKKKKEKRK 369
+ + EK +K ++ ++ ++
Sbjct: 123 KAELEKYEKNDPERIEKLKE 142
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 34.6 bits (80), Expect = 0.084
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 295 TEILIREKRERKRRK--------KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
T++L K R R K + + R+ K KK K K ++
Sbjct: 782 TDLLPGFKSSRTGRNFKAYLVKQPDGKIGFEFEPREPKAAAAKKTAAKATAAAATKAEKA 841
Query: 347 KKKRKKEEKKKKKKKKKKKE 366
K+ +K KK +K
Sbjct: 842 AAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 33.4 bits (76), Expect = 0.084
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K+RKE K + ++ KK+K+K +KK K K KKEEK K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSK--KKEEKPNGK 50
Score = 31.1 bits (70), Expect = 0.45
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++K+ K + +K KKKK K EKK K KKK++K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 31.1 bits (70), Expect = 0.49
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+RK+ K + +K K+KKE+ +KK K KKKE++
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 29.6 bits (66), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
K+RK K + +K KKKK K ++K K KKK+ K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 27.6 bits (61), Expect = 6.3
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K++K+ K + +K +KKK++ E+K K KKK++K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 27.6 bits (61), Expect = 6.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 306 KRRKKKKKRKRKR--KKRKEKEKKKKKRKKKKRKKKRKK 342
K+RK+ K + ++ KK+KEK +KK + KKK +K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 27.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++K+ K + +K +KKKK+K +KK K KK+
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKK 43
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 33.1 bits (76), Expect = 0.086
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ KK K K+K + EK +KK KR+ + K++ +K R K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 30.0 bits (68), Expect = 0.80
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K+K R KK K KK+ K EK +KK K++ + ++++
Sbjct: 12 SKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQA 57
Score = 30.0 bits (68), Expect = 0.83
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ KK K K+K K +K ++K K++ + EK++ +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 30.0 bits (68), Expect = 0.84
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
IL R K+ K +KK K K ++K +++ +K++ +K R K
Sbjct: 20 KDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 28.1 bits (63), Expect = 4.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 309 KKKKKRKRK-----RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K KRK R K+ K KKK K +K ++K KR+ + K++ +K K +
Sbjct: 12 SKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDL 71
Query: 364 KKEKRKKR 371
+KE+R ++
Sbjct: 72 EKERRLRK 79
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 33.0 bits (76), Expect = 0.090
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 297 ILIREKRERKRRKKKKKR-----KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ E + ++ K ++ +R+E EKK+ KR+ ++RK ++ +
Sbjct: 55 QYLNEDIAWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLP 114
Query: 352 KEEKKK 357
K++++
Sbjct: 115 KDKEEP 120
Score = 31.0 bits (71), Expect = 0.40
Identities = 12/63 (19%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 303 RERKRRKKKKKRKR---KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K+++ K +RK E+++ ++K+ KR+ +R+K ++ + ++ K K
Sbjct: 59 EDIAWLKEERDDKTVSLNEAERK-AEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDK 117
Query: 360 KKK 362
++
Sbjct: 118 EEP 120
Score = 29.1 bits (66), Expect = 2.1
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 313 KRKRKRKKRK-----EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ + K E E+K ++ + +K++ KR+ + R+K ++ K K K+E
Sbjct: 62 AWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENE-RRKALGEEPLKSLDDLPKDKEEP 120
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 33.8 bits (78), Expect = 0.091
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K KE EK+++K+++ KK + + KK +++ E+++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.9 bits (73), Expect = 0.36
Identities = 10/48 (20%), Positives = 31/48 (64%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
ERK ++ +K+ +++ + ++K ++ + KK +++ ++++ K + K K
Sbjct: 151 ERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198
Score = 31.9 bits (73), Expect = 0.44
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
RK K+ +++E+K+++ +KK ++ R KK +K+ K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 30.4 bits (69), Expect = 1.1
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 322 KEKEKKKKK--RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K E+K K+ ++++K+++ +KK + + KK EK+ +K++ K E + K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198
Score = 30.4 bits (69), Expect = 1.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
EK+E K+ + +K+ + + K+ EK+ +KR+ K + K K K
Sbjct: 158 EKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTK 201
Score = 30.0 bits (68), Expect = 1.6
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+K K K+ +++E+ +K+ ++ R K+ +K+ +K++ K E K K K +
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203
Score = 29.2 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
EK+E+ KK ++ + +K KE EK++ K + K K
Sbjct: 161 EEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198
Score = 28.5 bits (64), Expect = 4.6
Identities = 11/40 (27%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKK-KKKKEKRKKR 371
+K ++ +++++K+++ KK E+ + KK +K+ EKR+ +
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 34.2 bits (79), Expect = 0.096
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK-KKRKKKKRKKKKRKK 352
L E+RE K++ +K R+++++ + ++ ++RK+ K ++ +KK +KR +
Sbjct: 307 HEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLE 366
Query: 353 EEKKKKK 359
+ K K
Sbjct: 367 KLKSNKS 373
Score = 33.8 bits (78), Expect = 0.14
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 295 TEILIREKR--ERKRRKKKKKRKRKRK---KRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
TE L K E ++ + R + + K+K EK ++K K+ + ++ ++RK+
Sbjct: 289 TEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELN 348
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
K EE +KK + +K+ ++ K
Sbjct: 349 SKLEEIQKKLEDLEKRLEKLK 369
Score = 32.3 bits (74), Expect = 0.38
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I E R + ++ KK+ ++ + KEK ++ ++ + +K+ K + +K+ ++ +K+
Sbjct: 306 IHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRL 365
Query: 359 KKKKKKKE 366
+K K K
Sbjct: 366 EKLKSNKS 373
Score = 30.0 bits (68), Expect = 1.8
Identities = 16/84 (19%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
L ++ TE L+ E R + K + ++ E + + +++ +KK +K + K+
Sbjct: 272 LQELKETTENLLYENY-RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKE 330
Query: 348 KKRKKEEKKKKKKKKKKKEKRKKR 371
K+ ++ E+ +++K+ K ++
Sbjct: 331 KRLEELEQNLIEERKELNSKLEEI 354
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.10
Identities = 11/74 (14%), Positives = 37/74 (50%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
EI ++ E ++ + +R + +EKE+ ++ + + + + + K ++ + E
Sbjct: 219 EEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRE 278
Query: 355 KKKKKKKKKKKEKR 368
++ ++ ++K +R
Sbjct: 279 LERLLEELEEKIER 292
Score = 33.2 bits (76), Expect = 0.25
Identities = 10/71 (14%), Positives = 37/71 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK K ++ K+ + ++ KE+ + ++ +++ + +K ++ ++ E+ +++
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433
Query: 361 KKKKKEKRKKR 371
KK +++ +
Sbjct: 434 KKLEEQINQLE 444
Score = 32.4 bits (74), Expect = 0.40
Identities = 12/71 (16%), Positives = 38/71 (53%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ R R +K++ + R++ KE +KK K+ +++ + + + + + + E ++ +++
Sbjct: 575 LEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEE 634
Query: 361 KKKKKEKRKKR 371
+ + EK +
Sbjct: 635 LESELEKLNLQ 645
Score = 32.4 bits (74), Expect = 0.47
Identities = 14/79 (17%), Positives = 41/79 (51%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
++ EI +R + ++K + + +E E+ +++ ++ +K ++ ++ + +K
Sbjct: 666 LEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725
Query: 353 EEKKKKKKKKKKKEKRKKR 371
E ++ KK+ +K EK +
Sbjct: 726 AELEELKKELEKLEKALEL 744
Score = 31.3 bits (71), Expect = 0.89
Identities = 13/72 (18%), Positives = 39/72 (54%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ E+ ++ + + ++ + + +E KK + ++ ++ + +K + ++ KKE +K +
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739
Query: 359 KKKKKKKEKRKK 370
K + +E R+K
Sbjct: 740 KALELLEELREK 751
Score = 31.3 bits (71), Expect = 1.1
Identities = 12/72 (16%), Positives = 38/72 (52%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E+ E + K + ++ ++ ++ E ++ K ++ + R +K+ ++ R++ ++ KKK
Sbjct: 542 LEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKK 601
Query: 360 KKKKKKEKRKKR 371
K+ ++ +
Sbjct: 602 LKELEERLSQLE 613
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/71 (18%), Positives = 41/71 (57%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ++ ++ ++ K K + ++ KE+ ++ + + K+ ++ R + RK+E ++ ++
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE 593
Query: 360 KKKKKKEKRKK 370
+ K+ K+K K+
Sbjct: 594 RLKELKKKLKE 604
Score = 29.3 bits (66), Expect = 4.3
Identities = 10/86 (11%), Positives = 40/86 (46%)
Query: 286 MDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+++D + E + K K+ K K + + + E + + ++ K+ +
Sbjct: 157 KEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELK 216
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
K ++ ++E+++++ +++ + + +
Sbjct: 217 KLEEIQEEQEEEELEQEIEALEERLA 242
Score = 29.0 bits (65), Expect = 5.4
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK-----K 358
E + ++ K+ + R R KE+ ++ R++ K KK+ K+ ++ + +E +
Sbjct: 565 EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624
Query: 359 KKKKKKKEKR 368
+ + ++ E+
Sbjct: 625 ENELEEAEEE 634
Score = 28.6 bits (64), Expect = 7.6
Identities = 12/82 (14%), Positives = 43/82 (52%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
D+ E L E +E K+ ++ ++ + + + +E E +++ + + +K+R ++ + +
Sbjct: 200 DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL 259
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
+ + + K ++++ + +R
Sbjct: 260 EIESLELEALKIREEELRELER 281
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 32.7 bits (75), Expect = 0.10
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K + ++K + +K K ++EE +K +K+ KK +K +
Sbjct: 73 KVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 31.2 bits (71), Expect = 0.32
Identities = 8/50 (16%), Positives = 24/50 (48%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + + ++ K + RK+ + ++++ +K +K+ K+ +K
Sbjct: 76 KPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 30.4 bits (69), Expect = 0.71
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 317 KRKKRKEKEKKKKKRKKKKRK---KKRKKKKRKKKKRKKEEK 355
+ E+EK + +++ K + RK +KR KK +K E
Sbjct: 86 HTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 30.0 bits (68), Expect = 0.91
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K R + +++K + +K K +++ +K +K+ +K KK +
Sbjct: 75 GKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K R + ++ K + RK+ K ++++ ++ ++ KK KK +
Sbjct: 72 IKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 27.3 bits (61), Expect = 7.1
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
V V+ + + E+ + + RK+ K ++ + RK +++ KK +K +
Sbjct: 82 VTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 32.2 bits (74), Expect = 0.10
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 301 EKRERKRRKKKKKRKR-KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ R K R + +K + +R++K KK K+ R +RKK R+ K+ +K+ ++
Sbjct: 21 DVRVEKERALEALKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSD 80
Query: 360 KKKKKKEKRK 369
+K+ K K +
Sbjct: 81 EKEIKDLKEQ 90
Score = 30.3 bits (69), Expect = 0.47
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK--KRKKKKRKKKRKKKKRKK 347
DV V+ E R K+ + +R++KRKK +K + +RKK R+ K+ +KK ++
Sbjct: 21 DVRVEKE---RALEALKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEE 77
Query: 348 KKRKKEEKKKKKKKKKKKEK 367
+KE K K++ K +
Sbjct: 78 TSDEKEIKDLKEQLSKAEVD 97
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 34.2 bits (79), Expect = 0.10
Identities = 14/49 (28%), Positives = 42/49 (85%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
R R+RR+++++ +R+R++R+ + +++ +R++++R+++R++++RK+KK
Sbjct: 14 RGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKKLI 62
Score = 34.2 bits (79), Expect = 0.12
Identities = 13/52 (25%), Positives = 45/52 (86%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
R +R R RR+++++R+ +R++R+ + +++++ ++++R+++R++++R++K++K
Sbjct: 9 RRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKK 60
Score = 33.4 bits (77), Expect = 0.20
Identities = 16/53 (30%), Positives = 40/53 (75%), Gaps = 7/53 (13%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+R R+RR+ +++R+R+R +R+ +R +++R+++R++++R+++KRKK
Sbjct: 15 GRRRRRRRRRARRRRRRRRVRRR-------RRGRRRRRRRRRRRRRRRRKRKK 60
Score = 33.0 bits (76), Expect = 0.25
Identities = 14/47 (29%), Positives = 38/47 (80%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
R +R R+RR ++++R+R+ ++R+ +++++R++++R+++RK+KK
Sbjct: 16 RRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKKLI 62
Score = 31.1 bits (71), Expect = 0.98
Identities = 15/54 (27%), Positives = 46/54 (85%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R+RR++ + R+R+R++R+ + +++++R +++R+ +R++++R++++R++ K+KK
Sbjct: 7 RRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKK 60
Score = 29.5 bits (67), Expect = 3.4
Identities = 14/58 (24%), Positives = 46/58 (79%), Gaps = 4/58 (6%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R R+RR + ++R+R+R++ +++++R++ +R+++ ++++R++++R++ ++K+KK
Sbjct: 7 RRRRRRWRGRRRRRRRRRA----RRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKK 60
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 32.4 bits (74), Expect = 0.11
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 311 KKKRKRKRKKRK-EKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ +RKRK +++ + KKK+K+ + + KK KK++R
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 32.0 bits (73), Expect = 0.14
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ ++KRK++++ + KKKRKK + KK KK++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 32.0 bits (73), Expect = 0.16
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ ++KRKE++K + KKK++K + + KK K+ ++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 31.6 bits (72), Expect = 0.22
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ +RK+K+++K + K+K+KK + + KK KK +R
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 31.6 bits (72), Expect = 0.24
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ ++++K++++ + KKKRKK + + K+ KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 31.2 bits (71), Expect = 0.29
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ ++KRK ++K + +KK+KK + + +K +K+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 31.2 bits (71), Expect = 0.30
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ ++K++++++ + K+K+KK R R K+ K++++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.9 bits (70), Expect = 0.34
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++++K+++K + KK++KK R + KK KK+ +
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.9 bits (70), Expect = 0.35
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+++ + +++ ++K + K+K++K + + KK KK+R+
Sbjct: 60 QLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.1 bits (68), Expect = 0.73
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ +RK KE++K + KK++KK + + K+ +K+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 29.7 bits (67), Expect = 0.88
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++K+K ++K + +KK+K+ + + KK K++R+
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 28.9 bits (65), Expect = 1.6
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
++RK+++K + KK+++K + R KK K++++
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 28.9 bits (65), Expect = 1.7
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ ++++K ++K + K+K+KK + + +K +K+
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 27.4 bits (61), Expect = 5.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
RKR++++K + +KKRK+ + KK KKR++
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 34.1 bits (78), Expect = 0.11
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 273 FHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
F H L ++ K + + KK K + +KE KK ++K
Sbjct: 93 FKHEQLWNSQVKGILTLG------------------KKTNDDLEKIESKKESINKKNEKK 134
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K +R++K+ K + KK E+R K
Sbjct: 135 IKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFK 172
Score = 28.4 bits (63), Expect = 7.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EK + KK+ KK +KK K + + K ++EEK++K K+
Sbjct: 118 EKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKK 166
>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras
GTPases. RGK subfamily. The RGK (Rem, Rem2, Rad,
Gem/Kir) subfamily of Ras GTPases are expressed in a
tissue-specific manner and are dynamically regulated by
transcriptional and posttranscriptional mechanisms in
response to environmental cues. RGK proteins bind to the
beta subunit of L-type calcium channels, causing
functional down-regulation of these voltage-dependent
calcium channels, and either termination of
calcium-dependent secretion or modulation of electrical
conduction and contractile function. Inhibition of
L-type calcium channels by Rem2 may provide a mechanism
for modulating calcium-triggered exocytosis in
hormone-secreting cells, and has been proposed to
influence the secretion of insulin in pancreatic beta
cells. RGK proteins also interact with and inhibit the
Rho/Rho kinase pathway to modulate remodeling of the
cytoskeleton. Two characteristics of RGK proteins cited
in the literature are N-terminal and C-terminal
extensions beyond the GTPase domain typical of Ras
superfamily members. The N-terminal extension is not
conserved among family members; the C-terminal extension
is reported to be conserved among the family and lack
the CaaX prenylation motif typical of
membrane-associated Ras proteins. However, a putative
CaaX motif has been identified in the alignment of the
C-terminal residues of this CD.
Length = 219
Score = 33.5 bits (77), Expect = 0.12
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
E ++R+ R R+ K+K R+ +KR+E KK KR K K K K+K K
Sbjct: 156 EGIVRQVRLRRDSKEKNTRRMASRKRRESITKKAKRFLSKIVAKNNKGMAFKQKSK 211
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 34.0 bits (78), Expect = 0.12
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ K K +K K R + KK K +++ K RK E + K K
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKA 102
Query: 366 EK 367
Sbjct: 103 PS 104
Score = 28.6 bits (64), Expect = 5.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
E+ +K K KK K + + KK K E ++K + RK
Sbjct: 42 EQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRK 88
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 33.9 bits (78), Expect = 0.12
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I RK+ K + ++ +KRKE KK+ KRK+ K + K+ ++++
Sbjct: 338 IANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQA 397
Query: 359 KKKKKKKEKRKKR 371
K + K E+ K+
Sbjct: 398 KLEFIKLEELKRL 410
Score = 32.0 bits (73), Expect = 0.52
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I+E R+RK KK + K KE K + +K ++++ K + K EE K+
Sbjct: 354 IKENRKRKELALAKK---QSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
Query: 359 KKKKKKK 365
+ K+K+
Sbjct: 411 ENGKQKR 417
Score = 28.1 bits (63), Expect = 8.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKK---KKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + +K+K KK+ K+K+ K + KK ++++ K + K E+ K+ +
Sbjct: 352 EAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLE 411
Query: 361 KKKKK 365
K+K
Sbjct: 412 NGKQK 416
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 33.2 bits (76), Expect = 0.13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
E KK KKK+ RKKK KK K+KK+EK++ + ++
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEEL 85
Score = 31.7 bits (72), Expect = 0.38
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK K+K+ ++K+ KK KK+KK+K + + + EE KK + K +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQN 107
Query: 369 KKR 371
Sbjct: 108 TAA 110
Score = 29.8 bits (67), Expect = 1.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ KK KKKK ++KK +K KK+KKE+++ + ++
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSD 87
Score = 29.4 bits (66), Expect = 2.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ KK K+KK +KK+ KK KKKK++KEE + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 27.9 bits (62), Expect = 6.8
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ KKK+ RKK+ K+ KKKK++K++ + ++ ++ ++ +KK + K +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Query: 368 RKK 370
+
Sbjct: 109 AAE 111
Score = 27.9 bits (62), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ KK KKKK +K+K +K KKKKK+K++
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 27.9 bits (62), Expect = 7.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K+ K+KK ++KK K+ KKK+K+K + + ++ E+ ++ KK E
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELP 103
Query: 369 KK 370
K
Sbjct: 104 KV 105
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 31.5 bits (72), Expect = 0.13
Identities = 14/46 (30%), Positives = 34/46 (73%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
E+R+ + + +K R+ ++RKE+E++K+KRK+ ++++K ++R+
Sbjct: 43 EERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 29.9 bits (68), Expect = 0.42
Identities = 12/44 (27%), Positives = 36/44 (81%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++++ E+ +K R++ +R++K ++++++K+KR EE++KK ++++
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 29.2 bits (66), Expect = 0.97
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K R+E E+++K+R+++K K+KR ++R+KK ++
Sbjct: 53 EKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 28.0 bits (63), Expect = 2.1
Identities = 11/49 (22%), Positives = 39/49 (79%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K ++ ++++ + EK +++ +R++K+R+++++K+KR ++R+K+ ++++
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.5 bits (59), Expect = 7.3
Identities = 13/49 (26%), Positives = 36/49 (73%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+++ ERK + ++ ++ R+ +R+ KE++++K K+K+ ++R+KK +++
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.5 bits (59), Expect = 7.6
Identities = 12/49 (24%), Positives = 36/49 (73%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++ + RK++ + K ++ E+E+K+++ +K+KRK+ +++++K ++R+
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 31.8 bits (73), Expect = 0.13
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 319 KKRKEKEKKKKKR-KKKKRKKKRKKKKRKKKKRKKE 353
K+RKE+EK +++ K+ + KR++ + K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKV 36
Score = 31.1 bits (71), Expect = 0.20
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKK--EKRKK 370
K++K ++K +++EE K+ K K+++ EK +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 30.3 bits (69), Expect = 0.39
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+RK++++ ++ ++ KR K +++E ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.5 bits (67), Expect = 0.74
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
KE+K++++ +++ + KR K ++++ +K EK KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.2 bits (66), Expect = 0.94
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+RK++ K ++ ++ KR K K+++ ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 29.2 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
K E K +++++ ++ K KR+E E+K +K KK
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 28.8 bits (65), Expect = 1.4
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K +K++ K +R+++ ++ K K+EE ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 27.6 bits (62), Expect = 3.2
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
K++K + K ++ +E ++ K ++++ +K K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 33.2 bits (76), Expect = 0.14
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK---------RKKKKRKKKKRKKEEK 355
RK +++R + ++R E +KKK+ +K +K+ KK+K K + RK+ E+
Sbjct: 115 RKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQ 171
Score = 29.3 bits (66), Expect = 3.0
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK---------KKKEKRKK 370
R E E+ + RK ++R+ R +++ + ++KKEE +K +K+ +KKEK K
Sbjct: 104 DRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKA 163
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 32.6 bits (75), Expect = 0.14
Identities = 17/79 (21%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+VD + ++ E K +K+ +++ K K + E +KK+K+ +K+++K +++ ++ RK
Sbjct: 20 VVDVQKVLSESPAGKAAQKQLEKEFK-KLQAELQKKEKELQKEEQKLQKQAATLSEEARK 78
Query: 352 KEEKKKKKKKKKKKEKRKK 370
++++ ++K+++ ++K++
Sbjct: 79 AKQQELQQKQQELQQKQQA 97
Score = 30.7 bits (70), Expect = 0.72
Identities = 12/70 (17%), Positives = 49/70 (70%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++ E++ +K + + ++K K+ +++E+K +K+ ++ RK K+++ +++++E ++K+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 359 KKKKKKKEKR 368
+ +++ +++
Sbjct: 96 QAAQQELQQK 105
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.8 bits (77), Expect = 0.14
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 239 PLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLI-DVIVDTEI 297
P+G+ N + + K L EA E KR + + + A D +TE
Sbjct: 143 PVGEWYNFNPVAQYKTLTAEEAEEEMKRRKKTANGFQLMMMKAAKNGPAAFGDEDEETE- 201
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
EK R K K + + + ++ K + +K +KKKK+ K +KK + K
Sbjct: 202 --GEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDK 259
Query: 358 KKKKKKKKE 366
K K+ +
Sbjct: 260 KGKRGGDDD 268
Score = 33.8 bits (77), Expect = 0.16
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R+ K E K + + + ++ ++K ++ K+ KK KK K KK K
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 31.1 bits (70), Expect = 0.92
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 301 EKRERKRRKKK--KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE---- 354
E+RE K + K + + +E E++K + + KK +K KK K KK ++
Sbjct: 298 EEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Query: 355 -------------------KKKKKKKKKKKEK 367
KK+K+ KK+E
Sbjct: 358 SGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEP 389
Score = 30.7 bits (69), Expect = 1.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+E + + K + ++ ++ +++K ++E KK KK KK K KK
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 29.9 bits (67), Expect = 2.4
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
D I D+ + ER+ + + + ++ E ++ ++ K ++ KK K+ KK
Sbjct: 285 DYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKL 344
Query: 350 RKKEEKKKKK----------------------KKKKKKEKRKKR 371
+ K+ K KK+KE +K+
Sbjct: 345 KGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEE 388
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 31.4 bits (72), Expect = 0.16
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R + +KKK++K+ K + KR K+ +++K +K
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 30.2 bits (69), Expect = 0.37
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K+K+KK K E K+ KK E+RK R
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
Score = 29.8 bits (68), Expect = 0.56
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+KK++KK K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 27.9 bits (63), Expect = 2.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
RK+K++KE + + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 27.5 bits (62), Expect = 3.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKK-RKKKRKKKKRKKKKRKK 352
KK R RK+KEKK+ K + K+ KK ++RK + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/63 (23%), Positives = 45/63 (71%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +++ + K K+R E E+K ++++K++R++ RK+K+ ++R++++ + +K ++K +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 366 EKR 368
+++
Sbjct: 82 DEK 84
Score = 29.8 bits (67), Expect = 1.2
Identities = 15/61 (24%), Positives = 40/61 (65%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K ++ R KEK + + ++K ++++K+ +++ RK+K+ EE+++K+ + +K E++ +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 371 R 371
Sbjct: 82 D 82
Score = 27.1 bits (60), Expect = 8.4
Identities = 12/62 (19%), Positives = 33/62 (53%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + E+K +++K+ + + +K K + ++++RK+ + +K +K + +K + E
Sbjct: 37 RAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHEHNLAL 96
Query: 360 KK 361
Sbjct: 97 AN 98
>gnl|CDD|148067 pfam06237, DUF1011, Protein of unknown function (DUF1011).
Family of uncharacterized eukaryotic proteins.
Length = 102
Score = 31.5 bits (72), Expect = 0.17
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 12 FAATLSNVSTTSVSLLPLF------QIIAIISIMFIVLSTVALTL 50
A TLSNV+ L +F + +++++ + + + L
Sbjct: 43 LAVTLSNVANPLACFLAMFLPIRSLVFLGVLTVLGTLFTGYIMAL 87
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 32.2 bits (74), Expect = 0.18
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ KK K+++ K RKK K+ KEE+ KKK++K K K KK+
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 29.1 bits (66), Expect = 1.7
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KE KK K+++ ++ RKK K+ K+++ ++K++K K K KK+
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 29.1 bits (66), Expect = 1.8
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K K+ +KE+ +K +KK KK ++++ KKK+RK + K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 28.4 bits (64), Expect = 2.9
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
KK++ K +K+ +K K+++ KKK+RK K K KK+
Sbjct: 101 KKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.6 bits (62), Expect = 6.2
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKEEKKKKKKK 361
++ +K KK++ K RKK +K K+++ KK+++++K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.2 bits (61), Expect = 7.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
K KK +K + +K ++K KK ++++ KKK +K K K KK+
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.2 bits (61), Expect = 8.3
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KE KK KK++ +K +KK KK K ++ KKK++K K K +K+
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 32.7 bits (75), Expect = 0.18
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K +K +KK KEEKK K +K+K E+
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEE 121
Score = 28.5 bits (64), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 301 EKRERKRRKKKKK---RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K E+ K K + + +KE+KK K++K+ K +K+K +++
Sbjct: 72 TKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 27.7 bits (62), Expect = 7.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K +K ++K ++EKK K +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 31.2 bits (71), Expect = 0.18
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K KK K+KKKK+KKK + KEE +K++++K
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 30.5 bits (69), Expect = 0.33
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K KK KK+KKK+KKK + K++ E+++++K + K +
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEE 57
Score = 29.3 bits (66), Expect = 0.85
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K KK KKK+KKK+KK K K++ ++E+++K +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 29.3 bits (66), Expect = 0.86
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K +K +KKK+KKKK+ K K + +K++++K + K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLK 53
Score = 28.9 bits (65), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K KK +KKKK+KKK+ K K + K+EE+K + K+ +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEE 57
Score = 28.5 bits (64), Expect = 1.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K KK KKK+KKKK+K + K++ +K+++EK
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 28.2 bits (63), Expect = 2.1
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK----KK 363
+KKKKK+K+K K ++E +K++ +K + K+ + + K E+++ +
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMNLTEAERA 79
Query: 364 KKEKRKKR 371
+E ++KR
Sbjct: 80 FEEAQRKR 87
Score = 27.4 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K K +K KKKKK KKKK+ K +++ +K++ +K +
Sbjct: 11 KLKGKKIDVKKKKK-KKKKKNKSKEEVVTEKEEEEKSSAE 49
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 33.1 bits (75), Expect = 0.18
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
T +K +K K + ++ K+K+K K+ + + K + K
Sbjct: 151 KQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKA 210
Query: 353 EEKKKKKKKKKKKEKR 368
++ K K K K+K +R
Sbjct: 211 DKADKTKPKPKEKAER 226
Score = 31.6 bits (71), Expect = 0.56
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+ E+ + + K E+ + RK+ KK +K + + +K E +K
Sbjct: 119 RQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIAS 178
Query: 360 KKKKKKEKRK 369
K K+ K+K+K
Sbjct: 179 KVKEAKQKQK 188
Score = 29.3 bits (65), Expect = 3.0
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-KKRKKKKRKKEEKKKKK 359
E R++ KK +K + ++ E +K K K+ K+K+K K+ + + + +
Sbjct: 148 EARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETA 207
Query: 360 KKKKKKEKRK 369
K K +K K
Sbjct: 208 PKADKADKTK 217
Score = 28.9 bits (64), Expect = 3.9
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ RK+ ++K ++ + E +K + +K K K K+K+K ++ E + K +
Sbjct: 148 EARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETA 207
Query: 366 EKRKK 370
K K
Sbjct: 208 PKADK 212
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 33.7 bits (78), Expect = 0.19
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
ID +D EK E ++ ++ +K ++ + +K + +KK++ K K + KK
Sbjct: 161 IDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Query: 349 KRKK----------EEKKKKKK----KKKKKEKRKKR 371
K+ EE++ + K + KE + R
Sbjct: 221 IDKEEITPMKEINEEERRVVVEGYVFKVEIKELKSGR 257
Score = 29.0 bits (66), Expect = 4.9
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRK----------EKEKKKKKRKKKKRKKKRKKKKRK 346
I + + ER KKK K ++ K E + K++ +K + +K+ + +K
Sbjct: 128 IKVNNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLA 187
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKK 370
K+ + +K + +KKK+ K K
Sbjct: 188 KEALEAMKKLEAEKKKQSKNFDPK 211
Score = 29.0 bits (66), Expect = 5.7
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKR--KKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ V+ EI +++ K K+ ++ + + E K + +K + +++++ K
Sbjct: 128 IKVNNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLA 187
Query: 349 KRKKEEKKKKKKKKKKKEK 367
K E KK + +KKK+ K
Sbjct: 188 KEALEAMKKLEAEKKKQSK 206
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 33.5 bits (76), Expect = 0.20
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
RK R+ K KKK ++ +R K+ KKK +++ ++ +KK+
Sbjct: 639 RKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 32.8 bits (74), Expect = 0.33
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E++ RE+R+ KR K K + ++ ++ KEK+ K + + K ++ + +R +
Sbjct: 383 ELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEDLENEKSEEARALERMTQRH 442
Query: 356 KKKKKKKKKKEKR 368
K +K +R
Sbjct: 443 KNTSSWTRKMLER 455
Score = 30.8 bits (69), Expect = 1.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
T EK + +KKR EK + + +K ++ KR KKK +
Sbjct: 597 TPSTSLEKSMDRILHGQKKRAEGAVV-FEKPLEATENFNPWLDRKMRRIKRIKKKAYRRI 655
Query: 355 KKKKKKKKKKKEKRK 369
++ K+ KKK E+
Sbjct: 656 RRDKRLKKKMPEEEN 670
Score = 30.4 bits (68), Expect = 1.9
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK-KKRKKKRKKKKRKKKKRKKEEKKK 357
+ E ER R+ + + R++RK K K K K +K +K RK+K+ + ++ + +
Sbjct: 368 VEEVAERTRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEDLENE 427
Query: 358 KKKKKKKKEKRKKR 371
K ++ + E+ +R
Sbjct: 428 KSEEARALERMTQR 441
Score = 29.7 bits (66), Expect = 3.5
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKK-------KKKRKKKKRKKKRKK 342
D + + L + +KK+ ++ + + +K R+ K+ KKK +
Sbjct: 594 DFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKMRRIKRIKKKAYR 653
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R+ K+ KK+ +++ ++ KKR
Sbjct: 654 RIRRDKRLKKKMPEEENTQENHLGSEKKR 682
Score = 28.5 bits (63), Expect = 6.4
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R+ +R K+ KK+ +R +R ++ KKK ++ ++ +K++ K
Sbjct: 639 RKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLK 692
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 33.3 bits (76), Expect = 0.22
Identities = 16/75 (21%), Positives = 35/75 (46%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E EKR + R KKK+ + ++ ++K++K ++ K+ + + K + E
Sbjct: 48 EKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALEL 107
Query: 356 KKKKKKKKKKEKRKK 370
+K K+ + K+
Sbjct: 108 LNLEKDKELELLEKE 122
Score = 29.4 bits (66), Expect = 3.6
Identities = 18/90 (20%), Positives = 44/90 (48%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
F + + ++ + EI E E +K K+ + K+ E K+ +K+ + +
Sbjct: 83 LFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIE 142
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK++ K + + + + +KK ++ + +R+K
Sbjct: 143 KKRENNKNEERLKFENEKKLEESLELEREK 172
Score = 29.0 bits (65), Expect = 4.1
Identities = 13/66 (19%), Positives = 37/66 (56%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+R+ K +R + + ++K ++ + +++K +++ + + ++ EE+++ K
Sbjct: 141 IEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAIL 200
Query: 364 KKEKRK 369
KK KR+
Sbjct: 201 KKLKRR 206
Score = 29.0 bits (65), Expect = 4.8
Identities = 10/76 (13%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-KKRKKKKRKKEE 354
+ ++ + + + + K+ EK + + KKK+ + ++ +KK+++
Sbjct: 26 QARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFN 85
Query: 355 KKKKKKKKKKKEKRKK 370
++ K+ + +++ K
Sbjct: 86 EQIKQFELALQDEIAK 101
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 33.2 bits (76), Expect = 0.22
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K K ++EK K K++++ + E + KEK +K
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEK 267
Score = 31.6 bits (72), Expect = 0.75
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+I+DT I K + K++K + K+++K + + +
Sbjct: 205 IILDTLI----KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEY 260
Query: 351 KKEEKKKKKKKKKKKEK 367
KE+ +K K K+K +K
Sbjct: 261 DKEKLEKIKDLKEKAKK 277
Score = 28.5 bits (64), Expect = 6.0
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K + ++D ++ ++ + K E+ K K ++K + +
Sbjct: 202 KKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYD 261
Query: 344 KRKKKKRKKEEKKKKK 359
K K +K K ++K KK
Sbjct: 262 KEKLEKIKDLKEKAKK 277
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 32.1 bits (74), Expect = 0.23
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++KKK+KKKK++ E ++KKKK E+RK+
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
Score = 31.0 bits (71), Expect = 0.46
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+KK+KKKK+K+ +++KKK EE+K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 30.6 bits (70), Expect = 0.67
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
++KKKK+K+K++ +EKKKK ++RK+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.1 bits (66), Expect = 2.3
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KRKKKK+KKK++ + ++KK+K +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
K++K+K+KK+KE E ++K+KK ++RK+ ++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 28.7 bits (65), Expect = 2.7
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KRKKK+KKKK++ + ++++KK +++K++++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 28.7 bits (65), Expect = 2.7
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K++KKK+KKKK + +K++K +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQK 115
Score = 28.7 bits (65), Expect = 2.8
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++KK+KKKK+K+ + +E+KKK +++KE +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 28.3 bits (64), Expect = 3.8
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K+K+KKKK+KK+ + + KKKK E++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.9 bits (63), Expect = 4.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KRKK+K+K+KK+ + ++K+KK ++RK+ ++ + KK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 27.5 bits (62), Expect = 7.8
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+KK+KKK+KK+ +++KK+ +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 32.7 bits (75), Expect = 0.23
Identities = 14/70 (20%), Positives = 42/70 (60%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ E KR++ K++ + ++KR E K+ + +K+ + K ++ ++K ++ E++ +
Sbjct: 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEIN 68
Query: 361 KKKKKEKRKK 370
++ ++ K K+
Sbjct: 69 EEVQELKEKR 78
Score = 32.0 bits (73), Expect = 0.44
Identities = 16/63 (25%), Positives = 37/63 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ +K + ++ + + + +E EKK K + K++ KR++K+ + K+R +E +K K+
Sbjct: 217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR 276
Query: 361 KKK 363
+K
Sbjct: 277 GEK 279
Score = 30.4 bits (69), Expect = 1.3
Identities = 19/93 (20%), Positives = 42/93 (45%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
LR + + + + I+ R +KK++ +E+E +K ++ +K
Sbjct: 88 LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ KK + +K K+ + + + KKK +E +K
Sbjct: 148 EDAKKALEENEKLKELKAEIDELKKKAREIHEK 180
Score = 30.0 bits (68), Expect = 1.6
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ KK ++ + + + ++ +KK K R K+K K++ K+EE K++ ++ +K KR
Sbjct: 218 ELSKKIDELHEEFRNLQNELRE-LEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR 276
Query: 369 KKR 371
++
Sbjct: 277 GEK 279
Score = 28.5 bits (64), Expect = 5.0
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
E ++ ++ R + + R+ ++K K R K+K K+R+K++ K++ ++ +K K
Sbjct: 216 FVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275
Query: 359 KKKKKKKE 366
+ +K E
Sbjct: 276 RGEKLTTE 283
Score = 28.5 bits (64), Expect = 6.2
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKK-------KKKRKKKKRKKKRKKKKRKKKKRK 351
+ EKR+ K ++ R++ ++ R+E+++ K+KR + K + +K+ ++ K K
Sbjct: 39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
+ E + K E+ +R
Sbjct: 99 RNEFNLGGRSIKSLEREIER 118
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 33.1 bits (75), Expect = 0.23
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ RKRK R + + + KK KK K + K+K++K K K K+K +
Sbjct: 58 KFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEKITDKFKVKRKVDRFNGVSE 115
Score = 29.6 bits (66), Expect = 2.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R+RK R + R + KK + +K K K K++++K K + K+K + +
Sbjct: 60 RKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEKITDKFKVKRKVDRFNGVSE 115
Score = 28.5 bits (63), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K +E ++ K +KRK + + R + +K + KK K K KEK++K
Sbjct: 45 AKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEK 96
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 32.6 bits (74), Expect = 0.26
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R K RK+ R +E+E++ K K + + KRK ++RK++ K E++ KK+ + KK
Sbjct: 36 RLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKR 95
Query: 367 K 367
Sbjct: 96 N 96
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 32.3 bits (74), Expect = 0.26
Identities = 11/71 (15%), Positives = 30/71 (42%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ R++ K ++ K+ + ++ + KK+ K KR++++ ++ + K
Sbjct: 6 KVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSK 65
Query: 360 KKKKKKEKRKK 370
+K K
Sbjct: 66 ITPIGTDKVSK 76
Score = 28.5 bits (64), Expect = 4.6
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR-- 350
D E + E+ RK K K+ K+ R ++ + +K++K K++ +++++ +
Sbjct: 1 ADLEAKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYA 60
Query: 351 ----------------------KKEEKKKKKKKKKKKEKRKK 370
+ K+ KK KKK+K+KK
Sbjct: 61 SIVSKITPIGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKK 102
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 33.0 bits (76), Expect = 0.27
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++KKK KK K+ R + KKRK+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.1 bits (71), Expect = 1.0
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
R+KKK KK +KR + R +KK+K+ + +++R
Sbjct: 84 REKKKYKKD--VEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.1 bits (71), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 324 KEKKKKKRKKKKRKKKRK---KKKRKKKKRKKEEKKK 357
+EKKK K+ +KR + + KKRK+ + E+++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.7 bits (70), Expect = 1.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
R++KK K+ +K+ + + KKRK+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 4.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
++KKK K+ +KR + +K+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.8 bits (65), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R+KK+ KK +K+ R KK+K+ + K+R
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQR 119
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.1 bits (76), Expect = 0.27
Identities = 16/88 (18%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ +L + +D + I+ + KK + + + +E + R + R KK+
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEE---LEEELEELEAALRDLESRLGDLKKE 890
Query: 344 KRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + + +E ++K ++ + + EK++KR
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRKR 918
Score = 33.1 bits (76), Expect = 0.29
Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 251 REKALKRREAMERAKRE-GSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRK 309
R++ RE +E+ KRE + + S +L D + K
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD--------LNAAIAGIEAK 435
Query: 310 KKKKRKRKRKKRKEKEKKKKKRK--KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK--KK 365
+ + K K E +K++ K + K ++ K++ + EK+ K +++ +
Sbjct: 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
Query: 366 EKRKK 370
E + +
Sbjct: 496 EAQAR 500
Score = 32.7 bits (75), Expect = 0.38
Identities = 15/83 (18%), Positives = 45/83 (54%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++++ +D+I+D + E+ R+R K ++ + ++KR+ + + K K+ ++K +
Sbjct: 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243
Query: 344 KRKKKKRKKEEKKKKKKKKKKKE 366
++ ++ EK ++ + +K
Sbjct: 244 RQLASLEEELEKLTEEISELEKR 266
Score = 32.0 bits (73), Expect = 0.60
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 296 EILIREKRER----KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+++I EKR++ +R ++K +R + K K + + + K+K+ +++K+ ++
Sbjct: 190 DLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
Query: 352 KEEKKKKKKKKKKKEKR 368
+EE +K ++ + EKR
Sbjct: 250 EEELEKLTEEISELEKR 266
Score = 32.0 bits (73), Expect = 0.60
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ E ER +KR++ + R+E+EK ++ + K K++ + + K+K E +K+
Sbjct: 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEA 241
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/85 (15%), Positives = 43/85 (50%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
L + ++ E L +E +E + ++ K + K +++ + KK + ++ ++ + R
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R + KK++ + + + + +++
Sbjct: 880 LESRLGDLKKERDELEAQLRELERK 904
Score = 30.0 bits (68), Expect = 2.3
Identities = 15/83 (18%), Positives = 43/83 (51%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
I+ ++ L +E E++ ++ +++R +++ K EK+ + KK + + + ++ +
Sbjct: 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
Query: 349 KRKKEEKKKKKKKKKKKEKRKKR 371
R E + KK++ + + + R
Sbjct: 877 LRDLESRLGDLKKERDELEAQLR 899
Score = 28.1 bits (63), Expect = 9.2
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
I I + K+E + ++ R KK+R + + + + ++K ++
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Query: 349 KRKKEEKKKKKKKKKKK 365
+ + E+K+K+ + K K
Sbjct: 909 EAQIEKKRKRLSELKAK 925
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 32.9 bits (75), Expect = 0.28
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKR-----KKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KK ++ KK K + K +R + R K K++K KK+K+
Sbjct: 308 NPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVS 367
Query: 362 KKKKEKRKKR 371
K++ K
Sbjct: 368 KEEAAAIKAA 377
Score = 30.9 bits (70), Expect = 1.1
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 302 KRERKRRKKKKK--------------RKRKRKKRKEKEKKKKKRKKKKRKKKRKK-KKRK 346
K++ KR KK K R+ E + K KK+K KKRK+ K +
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Query: 347 KKKRKKEEKKKKKKKKKKKE 366
K K K +
Sbjct: 371 AAAIKAAGKAWYKTMISDSD 390
Score = 30.2 bits (68), Expect = 2.1
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 287 DLIDVIVDTEI--LIREKRERKRRKKKKKRKRKRKKRKEK--EKKKKKRKKKKRKKKRKK 342
DL +I E+ ++ ++ +R KK K K K R+ + +
Sbjct: 293 DLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARV 352
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K +K+K KK ++ K++ K K
Sbjct: 353 KAKKEKLAKKRKQVSKEEAAAIKAAGKA 380
Score = 28.2 bits (63), Expect = 7.9
Identities = 14/67 (20%), Positives = 25/67 (37%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+K K+ K+ K K K ++ + + K+EK KK+K+
Sbjct: 308 NPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVS 367
Query: 365 KEKRKKR 371
KE+
Sbjct: 368 KEEAAAI 374
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 30.0 bits (68), Expect = 0.30
Identities = 18/48 (37%), Positives = 34/48 (70%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
KR+ +K+ R+ K+R+ EK +KRK+KK +++K KR +K++++E
Sbjct: 20 KRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 28.8 bits (65), Expect = 0.66
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+R K+K +++ ++ KE+E +K +K+KRKK +K++ K+ RK+
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKE 63
Score = 26.9 bits (60), Expect = 4.0
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
R+ K++ EKE ++ ++++ +K +K+KRKK +K+K K+ +KE+++
Sbjct: 17 RRFKRKVEKEGILREM----KEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
Score = 26.1 bits (58), Expect = 6.7
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
E++ ++ K + +K EK K+KK +K++ K+ +K++++
Sbjct: 24 EKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 32.4 bits (74), Expect = 0.30
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K KK K +K K KK+ + K + + +K+ +K
Sbjct: 105 SKTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGGHPTQK 164
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 32.8 bits (75), Expect = 0.31
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 277 NLRDAFAKSMDLIDVIVDT------------EILIREKRERKRRKKKKKRKRKRKKRKEK 324
+LR LI+ I E+ I K+E + ++ ++ ++
Sbjct: 849 DLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFY 908
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K +K K+K +E+ K K K++ E +
Sbjct: 909 DDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAK 952
Score = 30.8 bits (70), Expect = 1.4
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKK--------- 328
+++ +I I + R +K +K + +KE+E K+
Sbjct: 843 IKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNE 902
Query: 329 -----KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + +K KE+ ++K K K K +
Sbjct: 903 EELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVE 950
Score = 30.5 bits (69), Expect = 1.6
Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 286 MDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEK-KKKKRKKKKRKKKRKKKK 344
++L+ D +E R K+ + R+K+K E+ + + + +K +K
Sbjct: 819 LELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKL 878
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K+E++ K+ +++ ++
Sbjct: 879 EELYILAKKEEEFKQFAEEEGLNEEE 904
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 32.7 bits (75), Expect = 0.33
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 280 DAFAKSMDLIDVIV-----DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
DA K+ +D ++ E++ K R+K KR + R+E + +++R+KK
Sbjct: 213 DAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKK 272
Query: 335 KRKKKR 340
+RK
Sbjct: 273 RRKLGI 278
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 32.0 bits (73), Expect = 0.35
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
KK K +KR+K+ +K + ++K KK RKKKK K + EE+ ++ K+K
Sbjct: 90 KKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 30.5 bits (69), Expect = 0.99
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ +K+ K+ K+++KK K R ++K KK KKKK K + + + +
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQ 138
Score = 28.6 bits (64), Expect = 4.3
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE +K++KK K + ++K KK ++KK++ K + +++ ++ K++
Sbjct: 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 31.4 bits (71), Expect = 0.35
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K + +++K K +K +KK KKK + K K + K
Sbjct: 95 EKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.0 bits (73), Expect = 0.35
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ K+K+ +K K+ KKK K++ +++KK + +K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 29.7 bits (67), Expect = 2.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
++ KKK+ +K +K KK+ K+K +EEKK + K +E
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENEN 95
Score = 29.3 bits (66), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K+ K+K +K KK KKK K+K +++K+ + + K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 29.3 bits (66), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K+ +KKR +K KK K+K K K + +KK ++K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 28.6 bits (64), Expect = 3.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+ K+KR RK KK K+K K+ K ++KK + K EE + ++
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKE-KLTEEEKKPESDDDKTEENENDPDNNEESGDS 106
Query: 369 KK 370
++
Sbjct: 107 QE 108
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 32.4 bits (75), Expect = 0.36
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK---------KKRKKKKRKKKKRKKEEK 355
++ +K K K + K K K K K KRK +K R K
Sbjct: 597 KQSSEKYKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCK 656
Query: 356 KK 357
KK
Sbjct: 657 KK 658
Score = 31.7 bits (73), Expect = 0.65
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK------RKKKKRKKEEKKKKKKKKKKK 365
K+ K K K K K K K K R+ KRK KK + K
Sbjct: 597 KQSSEKYKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCK 656
Query: 366 EK 367
+K
Sbjct: 657 KK 658
Score = 30.1 bits (69), Expect = 2.0
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ + K K + + R+ ++K +K R KKK
Sbjct: 617 GKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 29.0 bits (66), Expect = 5.3
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K + K K K + K + ++ ++K KK + +K+
Sbjct: 612 KCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|144738 pfam01254, TP2, Nuclear transition protein 2.
Length = 132
Score = 31.3 bits (70), Expect = 0.36
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K RK E K KRK KR K+ K KR+ RK
Sbjct: 98 KNRKNLEGKVSKRKAVKRSKQVYKTKRRSSGRK 130
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 32.2 bits (74), Expect = 0.36
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
EI ++EK + + +R R E+ K+KK+KKKK+KKK + ++
Sbjct: 59 EIFVQEKE---KLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
Score = 30.7 bits (70), Expect = 1.1
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 317 KRKKRKEKEKKK-------KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KRK R + K +K K + ++ + ++ KE+KKKKKKKKKK+E R+
Sbjct: 45 KRKIRDYLQDAKGEEIFVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
Query: 370 K 370
Sbjct: 105 W 105
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 30.2 bits (69), Expect = 0.37
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKE---KKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ +K ER +++K K++++ +K +E + + K K K+ + R K K ++ +K +
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVE 78
Query: 356 KKKK 359
KK K
Sbjct: 79 KKPK 82
Score = 27.2 bits (61), Expect = 4.1
Identities = 15/63 (23%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKK--KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++K++R +++K EK++K+ K+ ++ R + + K ++ + R K +K ++ +K ++
Sbjct: 20 EQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVEK 79
Query: 367 KRK 369
K K
Sbjct: 80 KPK 82
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.0 bits (73), Expect = 0.37
Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEK-KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ +++R + K+ RK +K + E E K + + + + + + +E +++
Sbjct: 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74
Query: 358 KKKKKKK 364
K+ ++K
Sbjct: 75 IKRAEEK 81
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 30.7 bits (70), Expect = 0.37
Identities = 8/49 (16%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK--KKKKKKKKKKEKRKK 370
E++ K +K++ +R+++ ++ + + +K KK++K + + + ++
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 30.7 bits (70), Expect = 0.38
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ ER+ + ++K+++ ++++ KE + K K KK+RK + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 30.3 bits (69), Expect = 0.53
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
R ++ K ++K + ++ +E ++ + K K +KK++K + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 29.9 bits (68), Expect = 0.64
Identities = 10/50 (20%), Positives = 29/50 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
R +R+ K +K+++ + ++ KE + K K +K+++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 29.9 bits (68), Expect = 0.66
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKR----KKKKRKKEEKKKKKKKKKKKEKRKK 370
+ +R+ K +K+++ +R K+ + K + K +KK++K E + +
Sbjct: 61 DAGLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/51 (19%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++ + ++K+++ +R+++ K+ + K K EKK++K + + E ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQ-AKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/53 (15%), Positives = 29/53 (54%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
L E++ + K+++ +R+++ ++ + K + +KK++K + + ++
Sbjct: 62 AGLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK--KKKRKKEEKKKKKKK 361
R ++ K +EKE++ +R+++ ++ + K K KK+RK E + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.0 bits (63), Expect = 3.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R +++ K + K ++ E+E++ K+ + K K +KK+RK + + E ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 27.2 bits (61), Expect = 6.7
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R ++ K +EK+++ ++++ K+ + K K KK+ K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.8 bits (60), Expect = 8.5
Identities = 6/50 (12%), Positives = 31/50 (62%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ +++ K + K+++ E++++ ++ + + K +K+++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|148820 pfam07432, Hc1, Histone H1-like protein Hc1. This family consists
of several bacterial histone H1-like Hc1 proteins. In
Chlamydia, Hc1 is expressed in the late stages of the
life cycle, concomitant with the reorganisation of
chlamydial reticulate bodies into elementary bodies.
This suggests that Hc1 protein plays a role in the
condensation of chromatin during intracellular
differentiation.
Length = 123
Score = 30.9 bits (69), Expect = 0.37
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK ++K KK + K K+ K K+ KK K K K +K KK KK
Sbjct: 56 EKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAKPATKKTAAKKVKKM 115
Query: 361 KKKKKEKR 368
KK+ +
Sbjct: 116 SKKRSTAK 123
Score = 29.3 bits (65), Expect = 1.4
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V T+ + EK + RK+ K ++ +K+ KK K K +K + K+ K
Sbjct: 34 VRTDSIKLEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAK 93
Query: 353 EEKKKKKKKKKKKEKRKK 370
+ K K K KK KK
Sbjct: 94 KAKAVKAKPATKKTAAKK 111
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 30.7 bits (70), Expect = 0.38
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+++KK+KKKK + E +KK+KK+ E+RK
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+++K+KKKK+ + + E+K+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.6 bits (62), Expect = 4.7
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KR+KKK+KKK + + +KK KKE +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.2 bits (61), Expect = 6.1
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 310 KKKKRKRKRKKRKE--KEKKKKKRKKKKRKKKRKK 342
K++K+K+K+K E EKK+KK ++RK +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 29.1 bits (65), Expect = 0.40
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
R+RK+K R+ ++ K + R KK+ KKK K+ K+++
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 29.1 bits (65), Expect = 0.46
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+++KK+ R+ + K+ + R KKK KKK K+ K+K ++
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDAYIDD 47
Score = 26.4 bits (58), Expect = 3.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R+RKK+ + ++ + R + +KK K+K K +EK
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 29.3 bits (66), Expect = 0.41
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
KK K+ KK+ E+KKKK KKKRK K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 25.9 bits (57), Expect = 6.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KK KK KKK ++K+KK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to preeclampsia.
NOSTRIN contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
The F-BAR domain of NOSTRIN is necessary and sufficient
for its membrane association and is responsible for its
subcellular localization.
Length = 239
Score = 32.0 bits (73), Expect = 0.41
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 289 IDVIVDTEI-LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++ VD L+ + R + + KKK R+ K +++ + ++ ++K K K+
Sbjct: 107 VENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSA 166
Query: 348 KKRKKEEKKKKKKKKKKKEKRKK 370
+ + KE++K + K+KK +E R K
Sbjct: 167 EVQDKEDEKLEAKRKKGEESRLK 189
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 32.1 bits (73), Expect = 0.42
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 266 REGSIVSFHHVNL------RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRK 319
R S SF H L R + + + V D E + +RE+K +K + R+R++
Sbjct: 200 RPSSTNSFTHRKLTRNLATRQRKSGGVKITIVGKDPEHE-KREREKKEEQKLRARRRRQN 258
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K K K + K ++E + +K K+ K++
Sbjct: 259 REKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSDCETRKAKEVKKEGA 310
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 32.2 bits (74), Expect = 0.42
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
E L + RE K +K +K+ KK K++KKKRKK
Sbjct: 569 EALKKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 31.5 bits (72), Expect = 0.85
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 314 RKRKRKKRKEKEKKKKKR-----KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
RK + + KK R K KK K+K K+ KK+K+KR
Sbjct: 559 RKPENYDLVYEALKKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKR 618
Query: 369 KK 370
KK
Sbjct: 619 KK 620
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.7 bits (72), Expect = 0.43
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+ KE + KK K K KK KK + +K+ E + + +KK E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAE 154
Score = 31.3 bits (71), Expect = 0.53
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KE+K+ K KK K + KK KK + E+K + + + EK+
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 31.3 bits (71), Expect = 0.54
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++K+ + K+ K K KK KK + EKK + + + ++K
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 29.7 bits (67), Expect = 1.7
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K K+ K +K K K K+ KK + ++K + + +K+ E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAV 158
Score = 29.4 bits (66), Expect = 2.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ K KK K K KK KK + KK + E +KK +
Sbjct: 110 KEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAV 158
Score = 29.0 bits (65), Expect = 2.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++K+ K +K K K K+ KK E +KK + + + KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKK 151
Score = 28.6 bits (64), Expect = 3.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ E K + K++K K KK + K +K +K + +KK E R +
Sbjct: 98 QAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAE 145
Score = 27.8 bits (62), Expect = 6.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K++++ K +K+K K KK KK + KK + + E+K + +E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEE 162
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 29.9 bits (68), Expect = 0.43
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK-----KKKRKKKRKKKKRKKKKRKKE 353
+ RER+ + + K K K E ++ + R KK +K KR+ K+ KK+K +
Sbjct: 9 VLSPRERQALEYNEALKEKYKHMPEIKRIARHRHVPKAIKKAQKIKREMKEAKKRKEENR 68
Query: 354 EKKKKKKKKKKKEKRKKR 371
K K K +RKK
Sbjct: 69 RKHSKPGSVPPKPERKKH 86
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 31.5 bits (72), Expect = 0.44
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKR---KKEEKKKKK 359
+E + KK K+K KR +RKK + EK +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 30.8 bits (70), Expect = 0.63
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ K+ K+K K +++K + +K RKK
Sbjct: 91 LVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + KK K+K K+ ++K+ + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + K+ ++K KR +KK R E+ +KK
Sbjct: 90 ELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.8 bits (65), Expect = 3.5
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 333 KKKRKKKRKK--KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ + K+ K+K K+ E KK + EK +K+
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.5 bits (64), Expect = 4.2
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
E + KK K+K +++ ++KK R ++ +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.1 bits (63), Expect = 5.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
E + K+ K+K KR + K+ + ++ +K+
Sbjct: 90 ELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 27.7 bits (62), Expect = 6.5
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++ + K+ K+K K+ +KK + ++ +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 27.7 bits (62), Expect = 7.5
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ + KK ++K K ++KK + K +K+
Sbjct: 90 ELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 31.2 bits (71), Expect = 0.45
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
IV+ + +E + K+ + + K+++ KE +K +K+ K K+ K + K R
Sbjct: 29 IVNLGRIFQESPQAKKVSADLESEFKKRQ-KELQKMQKELKAKEAKLQDDGKMEALSDRA 87
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
K E + KK+K +K++
Sbjct: 88 KAEAEIKKEKLVNAFNKKQQ 107
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 31.5 bits (72), Expect = 0.46
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK---RKKKRKKKKRKKKKRKKEEKKKKK 359
R KKK +R KE+ K+RK + + + KK + EK+K +
Sbjct: 3 RYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLR 60
Score = 29.2 bits (66), Expect = 2.8
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 321 RKEKEKKKKKRK------KKKRKKKRKKKKRKKKKRKKEEKKKKKK-KKKKKEKRKKR 371
R KKK R+ K+R K +K K + +E KK + +EK+K R
Sbjct: 3 RYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLR 60
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 30.7 bits (70), Expect = 0.46
Identities = 21/75 (28%), Positives = 48/75 (64%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
L ++ E +RR++ K++ + ++KE+E ++ K K K+ + K+R+ +K+ +EE
Sbjct: 13 QLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEE 72
Query: 355 KKKKKKKKKKKEKRK 369
KK +K+K+++ ++ K
Sbjct: 73 KKLRKEKEEEIKELK 87
Score = 29.5 bits (67), Expect = 1.1
Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK-KKKRKKKRKKKKRKKK-------K 349
L+ ++RE + + KR+ +R+E+ K+++ + +KK ++ ++ + K K
Sbjct: 2 LLEKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAK 61
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
R++ EKK +++KK +KEK ++
Sbjct: 62 RRRAEKKAEEEKKLRKEKEEE 82
Score = 27.2 bits (61), Expect = 8.0
Identities = 16/68 (23%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + K+R+++ ++K + ++ K K K+ + K++R +KK +++K+ ++EK+++
Sbjct: 25 RREELLKQREEELEKKEEE-LQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEI 83
Query: 360 KKKKKKEK 367
K+ K + +
Sbjct: 84 KELKAELE 91
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 31.6 bits (72), Expect = 0.47
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ +KRKE+ K+K K RK ++ +K+ K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 31.2 bits (71), Expect = 0.55
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K + KRK+R KKK + +K K+ RKK K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 30.8 bits (70), Expect = 0.75
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
E+K+K+R KKK K +K K+ RKK K K +K
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 30.0 bits (68), Expect = 1.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K ++KRK++ +KK K +K ++ +K K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 27.7 bits (62), Expect = 7.3
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ ++RK++ K+K + K K+ ++K + K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 27.7 bits (62), Expect = 9.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ + K KE+ KKK + +K K+ RKK K + KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 32.1 bits (73), Expect = 0.47
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--------KRKKE 353
K + K + + E E ++ +++ ++K+K KKK RK+K +R K
Sbjct: 322 KLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKL 381
Query: 354 EKKKKKKKKKKKEKRK 369
K+KK K + +R+
Sbjct: 382 RNKRKKGFKGRFRRRR 397
Score = 30.9 bits (70), Expect = 0.95
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 22/112 (19%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKR------------------- 321
A + + +VD++ E R ++K +K+ R+ K R
Sbjct: 259 EEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHE 318
Query: 322 ---KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K EK + + ++ K+E +KK+K KKK ++++
Sbjct: 319 EIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 31.7 bits (72), Expect = 0.48
Identities = 15/61 (24%), Positives = 20/61 (32%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K R + + K K + KK +K K K KK K+K
Sbjct: 146 AAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Query: 370 K 370
K
Sbjct: 206 K 206
Score = 29.8 bits (67), Expect = 1.8
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K K R K + K K + KK KK K K KK KKK
Sbjct: 151 KAPAKPRAKSPR-----PAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Query: 362 KKK 364
K K
Sbjct: 206 KTK 208
Score = 29.0 bits (65), Expect = 3.3
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 308 RKKKKKRKRK-RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K K R K K + + K+ KK K ++ KK KK+
Sbjct: 146 AAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Query: 367 KRK 369
K K
Sbjct: 206 KTK 208
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 30.8 bits (70), Expect = 0.48
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 296 EILIREKRERKR-RKKKKKRKRKRKKRKEKEKKKKKRK------KKKRKKKRKKKKRKKK 348
L+ RKR R+ ++RK ++++ KE ++ K K KK+ ++ RK ++ +K+
Sbjct: 52 GSLLEAAERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKE 111
Query: 349 KRKKEEKKKKKKKKK 363
+ + EE+ K K
Sbjct: 112 REELEEENDVTKGKD 126
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/77 (18%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + ++++ K +++ +K K + +++KR+++ ++++ +K+R+KE + K
Sbjct: 28 KAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADK 87
Query: 361 K-------KKKKEKRKK 370
+ KK+ E+ +K
Sbjct: 88 EKFVTSAYKKQLEENRK 104
Score = 28.5 bits (64), Expect = 2.3
Identities = 16/70 (22%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK--------KKKRKKKKRKKEEKKKKKK 360
+ ++RKR+R+ +E+ K +K+R+K+ + K KK+ ++ ++ +EE+K++++
Sbjct: 56 EAAERRKREREIAEER-KLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREE 114
Query: 361 KKKKKEKRKK 370
+++ + K
Sbjct: 115 LEEENDVTKG 124
Score = 28.5 bits (64), Expect = 2.4
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K ++K+ K E+K+ ++ K ++RK+++ EE+K +K+++K+ ++
Sbjct: 26 SIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDE 83
Score = 27.8 bits (62), Expect = 4.3
Identities = 16/67 (23%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKK-------RKKKRKKKKRKKKKRKKEEKKKK 358
+RRK++++ +RK +KE+EK+ + K+ +K+ + +K +++++++EE +++
Sbjct: 59 ERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEE 118
Query: 359 KKKKKKK 365
K K
Sbjct: 119 NDVTKGK 125
>gnl|CDD|236288 PRK08562, rpl32e, 50S ribosomal protein L32e; Validated.
Length = 125
Score = 30.7 bits (70), Expect = 0.48
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
E++ + + K KRK+ KR++ + K+ K +R + K R K K K
Sbjct: 1 SERKRLLKLRLKLKRKKPEFKRQDWHRYKRLGDKWRRPRGLDSKMRLKLKGK 52
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 31.9 bits (72), Expect = 0.48
Identities = 15/56 (26%), Positives = 39/56 (69%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KKKR+ +RK +E+E+++K+ + ++ ++ ++K+R K++ ++ + +K++K E
Sbjct: 220 KKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPE 275
Score = 31.2 bits (70), Expect = 0.92
Identities = 15/58 (25%), Positives = 41/58 (70%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
E + KKK++ +RK + +E+ +K+++ +K R+++ K++ +++ +R++ E +K++K
Sbjct: 215 ELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Score = 29.6 bits (66), Expect = 2.5
Identities = 16/64 (25%), Positives = 45/64 (70%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +K K+++++ E+ KKK++ ++K +++ +++K+++ RK E+++K++ K++
Sbjct: 200 KEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEI 259
Query: 366 EKRK 369
E+R+
Sbjct: 260 ERRR 263
Score = 29.6 bits (66), Expect = 2.6
Identities = 13/48 (27%), Positives = 34/48 (70%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
L K++R+ R+K + + +R+K++E ++K ++ ++K+R K+ +++R
Sbjct: 216 LEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRR 263
Score = 28.1 bits (62), Expect = 8.4
Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRK-----RKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
++ E L +++ ER++ ++++++RK RK R+E+EK++ K + ++R+ + +K++K
Sbjct: 213 ALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Query: 347 KKKRKKEEKKKKKK 360
+ E KK K
Sbjct: 273 VPEDGLSEDKKPFK 286
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is
phosphorylated (principally on threonine residues) in
the presence of OGA and thus co-purifies with a protein
kinases(s). The biological functions of remorins are
unknown but roles as components of the
membrane/cytoskeleton are possible.
Length = 112
Score = 30.4 bits (69), Expect = 0.50
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K +R++ K + + KK+ K + + K+ ++K +KKK + EK K K K+
Sbjct: 18 KAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAHKKAE 77
Query: 369 KKR 371
+KR
Sbjct: 78 EKR 80
Score = 29.2 bits (66), Expect = 1.1
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 261 MERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKK 320
++++ E ++ K I E + K E + +K ++K ++K+ +
Sbjct: 1 SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60
Query: 321 RKEKEKKKKKRKKKKRKKKRKK--KKRKKKKRKKEEKKKK 358
EK K K KK ++KR KR +++ K EEK K
Sbjct: 61 AAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAK 100
Score = 27.3 bits (61), Expect = 5.8
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 309 KKKKKRKRKRKKRKE-KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KKK K + + KK + EKKK + +K + K K+ ++KR E K+ +++ K +EK
Sbjct: 38 KKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEK 97
Query: 368 RKK 370
K
Sbjct: 98 AAK 100
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 31.6 bits (72), Expect = 0.50
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+E K+ K ++ K++K + ++++ R ++ K K KK+K
Sbjct: 144 KEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEK 203
Query: 363 KKKEKRKKR 371
KK+ K KK+
Sbjct: 204 KKQAKEKKK 212
Score = 30.8 bits (70), Expect = 0.88
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + ++ ++ K R ++++ + ++ + K KK KK++ K+KKK
Sbjct: 154 QNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 28.9 bits (65), Expect = 3.9
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E+ K+ K + +R K +K + K++R + R+ K K KK+K
Sbjct: 144 KEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEK 203
Query: 360 KKKKKKEKR 368
KK+ K++K+
Sbjct: 204 KKQAKEKKK 212
Score = 27.4 bits (61), Expect = 9.6
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ K+ K ++ +++K + K+ + + ++ K + KK+KK
Sbjct: 145 EEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKK 204
Query: 362 KKKKEKRK 369
K+ KEK+K
Sbjct: 205 KQAKEKKK 212
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 31.6 bits (72), Expect = 0.50
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 303 RERKRRKKKKKRKRK-------RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ R K +K K KK + + +KK+ KK K+ K K K +
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 356 KKKKKKKKKKEK 367
KKK K K
Sbjct: 61 ADKKKPFDKPFK 72
Score = 28.1 bits (63), Expect = 7.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 307 RRKKKKKRKRKRKKRKEK--EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K + K +K K+ + E+ KK K K KK+ KK K+ K K K K
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 365 KEKRKKR 371
+K+K
Sbjct: 61 ADKKKPF 67
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 32.0 bits (73), Expect = 0.51
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+ EK K K K + ++K K +K KK K+
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 28.9 bits (65), Expect = 4.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KE +K K K K K ++K K +K KK + K+
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 28.5 bits (64), Expect = 7.4
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+K K K K + ++K K +K K+ K+ E K ++
Sbjct: 448 CEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQE 501
Score = 28.1 bits (63), Expect = 9.8
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K K + K K +++ K +K KK K
Sbjct: 448 CEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 31.3 bits (71), Expect = 0.51
Identities = 8/66 (12%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
RER+ +++ + + + + + + +K+ +++ +K++ +K++K K
Sbjct: 67 RERELKEEAEAEE-EGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKD 125
Query: 363 KKKEKR 368
+ +
Sbjct: 126 PRGGTQ 131
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+R+ K + E+E + RK+ +++ +K+K + K+++ K
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAK 124
Score = 28.2 bits (63), Expect = 4.9
Identities = 6/49 (12%), Positives = 21/49 (42%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ +++ +++ +K+K R K+++ K + + K +
Sbjct: 94 GESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDKSQASLD 142
Score = 28.2 bits (63), Expect = 5.0
Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKK-----RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
R+R+ K+ E E++ + + +K+ +++ ++ K + K++K +
Sbjct: 67 RERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDP 126
Query: 369 KKR 371
+
Sbjct: 127 RGG 129
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 294 DTEILI---REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
D +I I E R ++ K+ ++ + + RK+ +++ +
Sbjct: 51 DEQIEIFRHSEIHALLRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQ 110
Query: 351 KKEEKKKKKKKKKK 364
K++ + K++K K
Sbjct: 111 KRKSCRDKERKSAK 124
Score = 27.8 bits (62), Expect = 7.1
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ +K+ +++ +K K + K+RK K + + K
Sbjct: 92 VAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 0.52
Identities = 16/84 (19%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 296 EILIREKRERKRRKKKKKRKRKRK--------KRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
EI + EKR +K + ++ + + ++E EK + + ++ +R+ + K +K ++
Sbjct: 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE 475
Query: 348 KKRKKEEKKKKKKKKKKKEKRKKR 371
+ + ++ +K+ ++K+KR +
Sbjct: 476 IRARDRRIERLEKELEEKKKRVEE 499
Score = 32.0 bits (73), Expect = 0.54
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK----RKKKKRKKKKRK 351
L RE E KR +K + + +R +R+ ++K +K R+ + R ++ K+ + KKK+ +
Sbjct: 439 SELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498
Query: 352 KEEKKKKKKKKKKK 365
+ E+K + +K +K
Sbjct: 499 ELERKLAELRKMRK 512
Score = 32.0 bits (73), Expect = 0.56
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 292 IVDTEILIREKR---ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
V E REK E +RR+ KR +K + E+ +++ + KR+ + K++ +K
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 349 KRKKEEKKKKKKKKKKKEK 367
+ + E +++ + K +K++
Sbjct: 456 ESELERFRREVRDKVRKDR 474
Score = 28.5 bits (64), Expect = 6.6
Identities = 13/77 (16%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 296 EILIREKRER-KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ E+R R K ++++R+ K +K ++ ++ + + K++ ++ KR+ E+
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 355 KKKKKKKKKKKEKRKKR 371
+ + ++ +++ + K R
Sbjct: 455 LESELERFRREVRDKVR 471
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein
S8e and similar proteins. This family contains the
eukaryotic/archaeal ribosomal protein S8, a component of
the small ribosomal subunits, as well as the NSA2 gene
product.
Length = 138
Score = 30.6 bits (70), Expect = 0.52
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRK-------KKKRKKKKRKKE 353
K K++ K K RKK+K + RK ++ +K R +
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRKPANTKLGGERFTRKVRVRG 47
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 31.6 bits (72), Expect = 0.53
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E K K + K K ++ + +K +K + K+ RKK+
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K K K + + K+ K ++ ++ + KR +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 29.7 bits (67), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK-KRKKKKR 350
+ + K K K ++ + EK +K + KR RKKK R
Sbjct: 243 AKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 29.7 bits (67), Expect = 2.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K K K K KR + +K +K R K+ +KK+ R
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
LI + K K K K KR + +K K + K+ +K+K
Sbjct: 235 LIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 28.9 bits (65), Expect = 3.7
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K K K K K K+ K K ++ + ++ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + K K + K K+ K K ++ K+ K+K R
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 27.8 bits (62), Expect = 8.8
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K K K K K K K +K +K + K+ RKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 31.8 bits (71), Expect = 0.54
Identities = 16/69 (23%), Positives = 43/69 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K E++++K +K+ + + E++K+K +++K+K +++K+K K + +++K
Sbjct: 156 QKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEK 215
Query: 361 KKKKKEKRK 369
+K + EK+
Sbjct: 216 QKTENEKQD 224
Score = 31.4 bits (70), Expect = 0.69
Identities = 15/68 (22%), Positives = 44/68 (64%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ +++ + R R K E E++++K +++K+K +++ + + K E++K+K +++K
Sbjct: 131 AQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEK 190
Query: 364 KKEKRKKR 371
+K +++K+
Sbjct: 191 QKTEQEKQ 198
Score = 30.6 bits (68), Expect = 1.5
Identities = 17/77 (22%), Positives = 46/77 (59%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
D + I + +K + + R K E+E++K +++K+K +K+ + + K ++E
Sbjct: 123 DQDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQE 182
Query: 354 EKKKKKKKKKKKEKRKK 370
++K +++K+K +++++K
Sbjct: 183 KQKTEQEKQKTEQEKQK 199
Score = 30.3 bits (67), Expect = 1.8
Identities = 15/71 (21%), Positives = 43/71 (60%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ++E+++ +K+ + + E+EK+K +++K+K +++++K K E +++K+
Sbjct: 157 KTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQ 216
Query: 360 KKKKKKEKRKK 370
K + +K+ K
Sbjct: 217 KTENEKQDLIK 227
Score = 29.5 bits (65), Expect = 3.5
Identities = 15/66 (22%), Positives = 42/66 (63%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E++ +K ++++++ K+ E + K +++K+K +++K+K +++K+K K +
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 364 KKEKRK 369
++EK+K
Sbjct: 212 EQEKQK 217
Score = 28.7 bits (63), Expect = 5.9
Identities = 12/76 (15%), Positives = 44/76 (57%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E +++++ ++ + + K +EK+K +++++K +++K++ K + E++
Sbjct: 155 EQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQE 214
Query: 356 KKKKKKKKKKEKRKKR 371
K+K + +K+ ++++
Sbjct: 215 KQKTENEKQDLIKEQK 230
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 30.8 bits (70), Expect = 0.55
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KK KK+ +K K +K K KKRK + + + K + K+ K ++ K KK
Sbjct: 5 KKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
Score = 27.4 bits (61), Expect = 7.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K +K+ +K K KK + KKRK + + R K + KK K ++ K
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPAS 57
Score = 27.4 bits (61), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ KKK +K K KK K K++K + + K + KK K +R
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRR 52
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 30.3 bits (69), Expect = 0.55
Identities = 13/57 (22%), Positives = 39/57 (68%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ E +++++ ++ K+ + R++ ++ ++RKK ++ +R+KKK +K++ ++E+K
Sbjct: 57 LDEAIAQQQQELEQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
Score = 27.6 bits (62), Expect = 5.6
Identities = 14/42 (33%), Positives = 30/42 (71%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K+ E+ +++ + ++RKK K +R+KKK +KEE ++++K
Sbjct: 72 EKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 32.1 bits (73), Expect = 0.59
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ +KKK K + E ++ KK KK +KK + K K + K KK+
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Query: 364 K 364
K
Sbjct: 477 K 477
Score = 30.2 bits (68), Expect = 2.1
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K++K K + + ++ KK K+ +K+ + K K + KK+
Sbjct: 415 NSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKE 474
Query: 360 KKKKKKE 366
K +++
Sbjct: 475 SVKSQED 481
Score = 29.0 bits (65), Expect = 5.4
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEE---KKKKKKKKKKKEKRKKR 371
K KKKK K K + EE KK KK +KK ++K K
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKV 463
Score = 28.6 bits (64), Expect = 6.4
Identities = 17/70 (24%), Positives = 25/70 (35%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E K +K+K K K + + +K KK +KK R K K
Sbjct: 408 ESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDS 467
Query: 361 KKKKKEKRKK 370
K K++ K
Sbjct: 468 KAGGKKESVK 477
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 31.6 bits (73), Expect = 0.60
Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 280 DAFAKSMDL--IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKE--KEKKKKKRKKKK 335
+A +++ + VD E+L + + +RR+ + + + + +R KE + KRK +
Sbjct: 12 EAVKEALAKRGFPLDVD-ELL---ELDEERRELQTELEELQAERNALSKEIGQAKRKGED 67
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + K K++ K E + + + +
Sbjct: 68 AEALIAEVKELKEEIKALEAELDELEAE 95
Score = 29.7 bits (68), Expect = 2.4
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 298 LIREKRERKRRKKKKKR------------KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
LIRE E + K+ + +R+ + E E+ + +R ++ + K+K
Sbjct: 6 LIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKG 65
Query: 346 KKKKRKKEEKKKKKKKKKKKEKR 368
+ + E K+ K++ K E
Sbjct: 66 EDAEALIAEVKELKEEIKALEAE 88
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 30.8 bits (70), Expect = 0.60
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K R +K+K+ R+R K KK + KK+R K + R+ K +++ K KK +K
Sbjct: 61 KERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKL 120
Query: 366 EKRKK 370
++ K
Sbjct: 121 YRKAK 125
Score = 30.8 bits (70), Expect = 0.63
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
LI+E + + KK R R +++ EK+KK R++ +K KK R KK + + +
Sbjct: 41 LIKEGVIKAKPKKGISRGRLKER---HEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIR 97
Query: 358 KKKKKKKKEKRKK 370
++ K+ + K
Sbjct: 98 ALRRYLKELRDKG 110
Score = 29.6 bits (67), Expect = 1.2
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
D+ +I + I + K+ R + K++ ++++K R+ +K +K + KK + K
Sbjct: 37 DIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTI 96
Query: 347 KKKRKKEEKKKKKKKKKKKEKRK 369
+ R+ ++ + K K KK RK
Sbjct: 97 RALRRYLKELRDKGKIDKKTYRK 119
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 31.6 bits (72), Expect = 0.60
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 292 IVDTEILIREKRERKRRKK-KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+VD E++ +K R+R+ + RK K KE K K ++ K+ +K+
Sbjct: 31 LVD-EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89
Query: 351 KKEEKKKKKKKKKKKEKR 368
K+ E ++ K K K
Sbjct: 90 KEAEVQEAKAALDAKLKT 107
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.0 bits (71), Expect = 0.61
Identities = 11/56 (19%), Positives = 33/56 (58%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK + ++ + + ++ KK ++K + +KR + K E +K+++++++ + K+
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRH 168
Score = 30.3 bits (69), Expect = 1.2
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKK-KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R+ + ++ K + K+ E+EK++ +KR + K +KR++++R+ EEK+ +
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Query: 362 KK-KKEKRKKR 371
KK+ ++ +
Sbjct: 173 AFLKKQNQQLK 183
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/63 (17%), Positives = 37/63 (58%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+++ K+ + K+ EK + + K + +K+ +++++ ++KR +E KK+ ++ + +
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQ 185
Query: 369 KKR 371
++
Sbjct: 186 LEQ 188
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 32.0 bits (73), Expect = 0.61
Identities = 10/63 (15%), Positives = 25/63 (39%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E +R K + K +E+ R + ++ K K++ ++ E + + +
Sbjct: 252 EMLKRMGAYKTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNR 311
Query: 364 KKE 366
+E
Sbjct: 312 FEE 314
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 31.0 bits (70), Expect = 0.62
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R+K KKKK K KK K + KK + KKK ++
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 31.0 bits (70), Expect = 0.67
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEE 354
KK+K K +K K K KK + KK+ +E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 30.2 bits (68), Expect = 1.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+RK +KKKK K KK K K KK + KKK R
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.8 bits (67), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
R++ EKKKK + KK + K +K + +KK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
R+K +KKK+ K K+ K + KK KKK ++
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 29.0 bits (65), Expect = 3.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 348 KKRKKEEKKKKKKKKKKKEKRKKR 371
KK+K + KK K K KK ++K+K R
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.6 bits (64), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKK 335
KK+K K KK K K KK + +KK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
R++ EK+KK K +K K + KK + KK+ +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKR 331
+KKK K K+ + K K+ E KKK R
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 7.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+RK +K+KK + KK K K KK E +KK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKK 112
Score = 27.9 bits (62), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
RRK K+KK K K+ K K +K + +KK R
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 344 KRKKKKRKKEEKKKKKKKKKKKEK 367
K+KK K KK + K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 29.1 bits (66), Expect = 0.62
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
KR+ +K R+ ++R+ EK +KRK+KK +++++K+ ++
Sbjct: 20 KRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 26.0 bits (58), Expect = 7.2
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R+ K++ EK ++ R+++ +K +K+KRKK +K+++KK +E+
Sbjct: 17 RRFKRKVEKAGILREL----RRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 31.6 bits (72), Expect = 0.63
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++E RE K+ RK EK + ++ K + K + K + + EE +
Sbjct: 1 LKELREALAELAKELRK---LTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDE 57
Query: 359 KKKKKKKEKRKKR 371
+ K
Sbjct: 58 LEAKPAASGEGGG 70
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 31.4 bits (72), Expect = 0.65
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 246 SNQMRREKALKRREAMERAKREGSIVSFHHVNLRD 280
S + R EAM R K G VSF NLR+
Sbjct: 131 SAEPSRSTTF---EAMRRIKAAGGFVSF-DPNLRE 161
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 31.8 bits (72), Expect = 0.67
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 220 WWAGITMTTVGYGDIC 235
+W+ TMTTVGYGD+
Sbjct: 256 YWSITTMTTVGYGDLH 271
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 31.8 bits (72), Expect = 0.68
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK----KRKKKKRKKKKRKKEEK 355
R +RE + +++ +K+ +K + + K K +K+ K++ ++ K
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 356 KKKKKKKKKKEKRKK 370
+ KK KE+ K+
Sbjct: 64 IADEVKKSTKEESKQ 78
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.8 bits (72), Expect = 0.68
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+ K K+K K + K + KK++ +K KE +K + K++
Sbjct: 742 EKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEE 801
Query: 364 K 364
+
Sbjct: 802 E 802
Score = 31.4 bits (71), Expect = 0.85
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK + K+ KK+ K +K K K+K K +E+ K + KK++ + K
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKG--KRKHKNDEEADKIESKKQRLEEK 771
Score = 30.7 bits (69), Expect = 1.5
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ K +K K KRK + ++E K + KK++ ++K K+ +
Sbjct: 734 KQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESR 793
Query: 362 KKKKEKRKK 370
K + K ++
Sbjct: 794 KSSRNKEEE 802
Score = 30.3 bits (68), Expect = 2.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K +K K++ K +K + K+K K + K + KK++ EEK
Sbjct: 722 KPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSS 773
Score = 29.9 bits (67), Expect = 2.7
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ KR+ K ++ K + K+++ +EK K+ +K R KEE+
Sbjct: 747 KGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
Score = 28.3 bits (63), Expect = 8.5
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK--RKKKKRKKEEKKKK 358
+++ KK+ K +K K K+K K ++ K + KK++ K
Sbjct: 724 AEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSH 783
Query: 359 KKKKKKKEKRK 369
KE RK
Sbjct: 784 HHSSSNKESRK 794
Score = 28.0 bits (62), Expect = 10.0
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEK---KKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++ + K K KRK K +E +K KK++ ++K +E +
Sbjct: 734 KQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESR 793
Query: 357 KKKKKKKKK 365
K + K+++
Sbjct: 794 KSSRNKEEE 802
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 31.8 bits (72), Expect = 0.70
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
REK ER++R +RK++ K + E+E+K K+ K+R
Sbjct: 9 REKLEREQR----ERKQRAKLKLERERKAKEEAAKQR 41
Score = 31.8 bits (72), Expect = 0.74
Identities = 10/36 (27%), Positives = 28/36 (77%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
R+ ++K +R++++RK++ K K +R++K +++ K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 30.6 bits (69), Expect = 1.7
Identities = 10/37 (27%), Positives = 27/37 (72%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
R+ R++ E+++++RK++ + K +++K K++ K+ E
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQRE 42
Score = 30.2 bits (68), Expect = 1.7
Identities = 13/47 (27%), Positives = 32/47 (68%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R R+K + +++++K+R K K +++RK K+ K+R+ E ++ ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 30.2 bits (68), Expect = 2.0
Identities = 10/36 (27%), Positives = 28/36 (77%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+R R++ +R+++E+K++ + K +R++K K++ K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 29.5 bits (66), Expect = 3.1
Identities = 12/63 (19%), Positives = 41/63 (65%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R+ R+K ++ +R+RK+R + + +++++ K++ K+R+ + ++ R+ + + + K ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 365 KEK 367
++
Sbjct: 66 MQE 68
Score = 29.5 bits (66), Expect = 3.4
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
E L RE+RERK+R K K +R+RK ++E K+++ + +R ++
Sbjct: 10 EKLEREQRERKQRAKLKL-ERERKAKEEAAKQREAIEAAQRSRR 52
Score = 29.1 bits (65), Expect = 4.6
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ R+K +R++++RK+ K K ++++K KE+ K+
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQ 40
Score = 27.9 bits (62), Expect = 9.2
Identities = 11/49 (22%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE--KRKKR 371
E ++ + K ++ +++RK++ + K +R+++ K++ K+++ E +R +R
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.5 bits (72), Expect = 0.74
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K + K + + KE +++ K KK KK KK R + +K E+ +K + K+K
Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLS 387
Query: 368 RK 369
+
Sbjct: 388 EE 389
Score = 29.5 bits (67), Expect = 3.0
Identities = 14/75 (18%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 299 IREKRE--RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++E+ + + K+ ++ K KK +K KK + + K+++ +K + K++ EE +
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELE 391
Query: 357 KKKKKKKKKEKRKKR 371
+ +++ K+ ++ +
Sbjct: 392 ELEEELKELKEELES 406
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.8 bits (72), Expect = 0.75
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
E L +E+ ER+R+ ++++R+ + K E ++ + K + +KR++K
Sbjct: 259 EKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 30.2 bits (68), Expect = 1.9
Identities = 13/53 (24%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+KR+E EK K+ +++R+ +++R++++ K + + + K + EKR+++
Sbjct: 253 EKRRELEKLAKEEAERERQ---AEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 29.5 bits (66), Expect = 3.8
Identities = 9/51 (17%), Positives = 36/51 (70%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++K+R+ ++ ++E E++++ ++++R++++ + + + K E +K+++K
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 29.5 bits (66), Expect = 3.9
Identities = 6/35 (17%), Positives = 21/35 (60%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++ +++R+ +E+ + + +K + K + K++ K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 29.1 bits (65), Expect = 4.3
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ L+ EKR + K++ +R+R+ +E+++++ +K + R + K + +KR++
Sbjct: 248 DFLLEEKRRELEKLAKEEAERERQA---EEQRRREEEKAAMEADRAQAKAEVEKRRE 301
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 31.2 bits (71), Expect = 0.75
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
E K+ K K + K K K K KK E++ K++ K + +
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.1 bits (63), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K + K K K K K K KK ++ KR+ K +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP 126
Score = 28.1 bits (63), Expect = 7.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K K K K + K KK +++ K++ + + R
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 31.0 bits (70), Expect = 0.75
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 11/77 (14%)
Query: 305 RKRRKKKKKRKRKRKKRKEK-----------EKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
K+R+++ R+ K ++ + K + K KKE
Sbjct: 75 FKKRRRQSSRRTKGHRQLLTLVRITEILASGADASGVKAATGAGKVEVAAEAAPAKAKKE 134
Query: 354 EKKKKKKKKKKKEKRKK 370
K
Sbjct: 135 AAPKAAPAPAAAAAPPA 151
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1
(DMAP1). DNA methylation can contribute to
transcriptional silencing through several
transcriptionally repressive complexes, which include
methyl-CpG binding domain proteins (MBDs) and histone
deacetylases (HDACs). The chief enzyme that maintains
mammalian DNA methylation, DNMT1, can also establish a
repressive transcription complex. The non-catalytic
amino terminus of DNMT1 binds to HDAC2 and DMAP1 (for
DNMT1 associated protein), and can mediate
transcriptional repression. DMAP1 has intrinsic
transcription repressive activity, and binds to the
transcriptional co-repressor TSG101. DMAP1 is targeted
to replication foci through interaction with the far N
terminus of DNMT1 throughout S phase, whereas HDAC2
joins DNMT1 and DMAP1 only during late S phase,
providing a platform for how histones may become
deacetylated in heterochromatin following replication.
Length = 175
Score = 30.6 bits (69), Expect = 0.76
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKR------KEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
E LI E R+ + RKK++++K + ++ ++ +K+ KK KKK +K
Sbjct: 3 EYLIAELRKIEARKKEREKKAQDLQKLITAADQQAAGFSTAEARKREKKLPKKKIPQKPG 62
Query: 350 RKKEEKK 356
KE+ K
Sbjct: 63 PSKEDSK 69
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 31.3 bits (71), Expect = 0.76
Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 10/123 (8%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRD--AFAKSMDLIDVIVDTEILIREKRE 304
N M + ++ E + E L +F + D E ++ +
Sbjct: 170 NSMLEALFRREKKEEEEEEEEDE-------ALIKSLSFGPETEEDRRRADDEDSEDDEED 222
Query: 305 RKRRKKKKKRKRKRKKR-KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K K +K KR + K KK R K + +KK
Sbjct: 223 NDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKA 282
Query: 364 KKE 366
E
Sbjct: 283 APE 285
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 31.6 bits (71), Expect = 0.78
Identities = 21/93 (22%), Positives = 44/93 (47%)
Query: 278 LRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
L+ + + D DV+ I KR R + K + +++E KK+RKK K K
Sbjct: 177 LQRLYEEFRDSDDVLGHIMKNITGKRSRAQVVDKLLQLGLVSEKRELRGGKKRRKKLKPK 236
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++ + ++ E++++ + K +E K+
Sbjct: 237 QPNGEESGEDDFQEDPEEEEQLPESKPEETEKR 269
Score = 29.3 bits (65), Expect = 3.5
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
E +K R+RK +E+ + ++K KK++ ++ K+
Sbjct: 400 ESEHETLALRKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQ 447
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 30.7 bits (70), Expect = 0.79
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 320 KRKEKEKKKKKRKKKKRK--KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ EK +K++K +K+ + +K K KK K++E+ + +K+ + K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 28.4 bits (64), Expect = 3.8
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
RK +K +++EK+ +KR ++ RK K +K +KR++E + +K+ K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMK 91
Score = 28.4 bits (64), Expect = 3.8
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 314 RKRKRKKRKEKEKKKKKRK-KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
RK ++ +++EKE +K+ R+ +K K KK K+++ E++K+ K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 28.0 bits (63), Expect = 6.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K +K +K++K +K+ ++ K K KK EKR++
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEE 77
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 31.2 bits (71), Expect = 0.81
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKR---KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++K RK++ E E KK K+K + R++ K +R + ++K KK+ +
Sbjct: 165 EEKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRR 224
Query: 368 RKK 370
+K
Sbjct: 225 ARK 227
Score = 30.0 bits (68), Expect = 1.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
E +RR K+ +R R E++ KKR++ ++ K +K +KK
Sbjct: 195 EARRRAKEFHIERAFSYRTERKAFGKKRRRARKLAKLDEKDIRKK 239
Score = 29.2 bits (66), Expect = 3.4
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEK----EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
EK R+++ + +K KK+ ++ +++ K+ ++ + +K KK +
Sbjct: 166 EKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRA 225
Query: 357 KKKKKKKKKEKRKK 370
+K K +K+ RKK
Sbjct: 226 RKLAKLDEKDIRKK 239
Score = 28.5 bits (64), Expect = 4.9
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 298 LIREKRERKRRKKKKKRKRK---------RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
L ++++ + KK +K+ R++ KE ++ + +RK KK++R +K
Sbjct: 168 LNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARK 227
Query: 349 KRKKEEKKKKKKKKK 363
K +EK +KK
Sbjct: 228 LAKLDEKDIRKKILN 242
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 31.1 bits (71), Expect = 0.82
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 243 MIGSNQMRREK-ALKRREAMERAKREGSIVSFHHVNLRDAF-----------AKSMDLID 290
GS + E E +E AK+ G ++SF NLR A+ ++L D
Sbjct: 125 HFGSIALASEPSRSALLELLEAAKKAGVLISF-DPNLRPPLWRDEEEARERIAELLELAD 183
Query: 291 VI----VDTEILIREKRERKRRKKKKKRKRKR 318
++ + E+L E+ + K
Sbjct: 184 IVKLSDEELELLFGEEDPEEIAALLLLFGLKL 215
>gnl|CDD|217123 pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family
are related to PIG-L an
N-acetylglucosaminylphosphatidylinositol de-N-acetylase
(EC:3.5.1.89) that catalyzes the second step in GPI
biosynthesis.
Length = 115
Score = 29.6 bits (67), Expect = 0.85
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 251 REKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKR 303
E RR A + ++L D + DL +++ LIRE R
Sbjct: 48 EELGAIRRREARAAAEILGVERVIFLDLPDGGLREWDLEELLAALARLIREIR 100
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 30.9 bits (70), Expect = 0.88
Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+++E K+ ++ + + K +EKE + K+ K +K+ + ++ +EE ++
Sbjct: 47 DEQEAKKSDDQETAEIEEVKEEEKEAANSE--DKEDKGDAEKEDEESEEENEEEDEESSD 104
Query: 361 KKKKKE 366
+ +K+
Sbjct: 105 ENEKET 110
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/83 (15%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK---KRKKKRKKKKRKK 347
+IV ++ + +++ K+ + + E ++ K ++K + K K +K
Sbjct: 28 IIVAYQLFFPSSPSDQAAADEQEAKKSDDQ-ETAEIEEVKEEEKEAANSEDKEDKGDAEK 86
Query: 348 KKRKKEEKKKKKKKKKKKEKRKK 370
+ + EE+ +++ ++ E K+
Sbjct: 87 EDEESEEENEEEDEESSDENEKE 109
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 30.1 bits (68), Expect = 0.88
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK--KKKRKK---EEKKKKKKKK 362
+ K+ + + + K KR K+ +K ++ +KKR K E+ +KK+KKK
Sbjct: 42 KAKRLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKK 101
Query: 363 KKKEK 367
KK+E+
Sbjct: 102 KKEEE 106
Score = 30.1 bits (68), Expect = 0.99
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + E + + K K+ RK K+ +K++ K ++ +KK++KKKK+
Sbjct: 45 RLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKE 104
Query: 360 KKKKKKEKR 368
++ +R
Sbjct: 105 EENDDPSRR 113
Score = 28.5 bits (64), Expect = 2.9
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKE--KEKKKKKRKKKKRKKKRKKKKRKKKKRKKE-EKK 356
+ +R + +K ++ KKR + E+ +KK+KKKK++++ R+ R+K+
Sbjct: 65 AKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDDPSRRPFDREKDLAVG 124
Query: 357 KKKKKKKKKEKRKK 370
K K +++E K
Sbjct: 125 GKISKAQRRELINK 138
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 31.4 bits (71), Expect = 0.88
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R+ K KK KK KK +R KKRKKK KK +KK +
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQA 653
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR---KKKKRKKKKR 350
RR K KK K+ +K R+ KKRKKK KK RKK +
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQA 653
Score = 30.3 bits (68), Expect = 2.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++ K +K K+ K+ + +K+KK+ KK RKK +
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQA 653
Score = 28.7 bits (64), Expect = 5.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+R K KK +K K+ +R KK++KK KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 28.7 bits (64), Expect = 7.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+ K +K K+ KK +R KKRKKK ++ +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 28.4 bits (63), Expect = 9.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R+ + +K KK KK ++ +K+KK+ KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 30.6 bits (69), Expect = 0.90
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 302 KRERKRRKKKKK--RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
KR +K R+ + K +K +RK R+E + + + RK+ +KKRK + E K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKR---QKKRKGLASGSRHSGGNENSGNK 58
Query: 360 KKKKKKEKR 368
++ +KK+ R
Sbjct: 59 QQNQKKDPR 67
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 30.8 bits (69), Expect = 0.91
Identities = 15/79 (18%), Positives = 50/79 (63%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
D V I IR++ ++ KK+K ++++ EK +++R++ + + + ++++ K +
Sbjct: 94 DTGVPLAIRIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDE 153
Query: 350 RKKEEKKKKKKKKKKKEKR 368
R+ +E+++++++++ E++
Sbjct: 154 REDQEEQEREREEQTIEEQ 172
>gnl|CDD|187870 cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 185
Score = 30.3 bits (69), Expect = 0.94
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
R + K +R +++R K+ + EE+ + + + +
Sbjct: 99 SRVQAKSSPERLRRRRLKRGEETEEEARARDIPDTESRT 137
Score = 29.1 bits (66), Expect = 2.7
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 305 RKRRKKKKKRKRKR--KKRKEKEKKKKKRKKKKRKKKR 340
R + K +R R+R K+ +E E++ + R + +
Sbjct: 100 RVQAKSSPERLRRRRLKRGEETEEEARARDIPDTESRT 137
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 30.5 bits (69), Expect = 0.95
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 309 KKKKKRKRKRKKRKE---------KE-KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K +K+++ KE KE KK KK K ++K EE++
Sbjct: 90 DKYQKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDI 149
Query: 359 KKKKKKKEKRKKR 371
+K EK+ K
Sbjct: 150 DEKLSMLEKKLKE 162
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 30.9 bits (70), Expect = 0.96
Identities = 13/69 (18%), Positives = 37/69 (53%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R+ R+ ++ + ++ +E+ + +R+ + K + + + R K++R+ E+ ++ K
Sbjct: 143 LRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLK 202
Query: 362 KKKKEKRKK 370
K E+R+
Sbjct: 203 LKANEERET 211
Score = 28.2 bits (63), Expect = 7.5
Identities = 10/71 (14%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKR-KKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++++R + + + RKR +K+ +++ ++ ++ K ++ R++ R+ + + E +++
Sbjct: 103 QQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRE 162
Query: 359 KKKKKKKEKRK 369
+++ + +R+
Sbjct: 163 TIEEEAELERE 173
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.6 bits (69), Expect = 0.96
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K K +E+ ++ + K+K KK+R ++ K+ + ++EK +K ++K
Sbjct: 124 DELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEK 183
Query: 366 EKRKK 370
EK+K+
Sbjct: 184 EKKKE 188
Score = 28.7 bits (64), Expect = 4.3
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +E K K+++KK+R ++ +K+ + + K +K ++K+KKKE + +
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELK 193
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 29.5 bits (67), Expect = 0.97
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 298 LIREKRERKRRKKKKKR-------------KRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
LIRE E + K +K+ + +R+ + E E+ + +R + ++ + KKK
Sbjct: 6 LIRENPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIGKAKKK 65
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKR 368
++ + E K+ K + K E
Sbjct: 66 KEDAEALIAEVKELKDELKALEAE 89
Score = 29.5 bits (67), Expect = 1.0
Identities = 12/64 (18%), Positives = 33/64 (51%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + +RR+ + + + + +R E K+ K KKKK + + K+ K + + + + ++
Sbjct: 33 ELDEERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRE 92
Query: 362 KKKK 365
+ +
Sbjct: 93 LEAE 96
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 28.9 bits (65), Expect = 0.99
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + +KKKK+KKKK ++ K KK E +
Sbjct: 17 KTEADLVKKKKKKKKKK-AEDTAATAKAKKATAEDVSEG 54
Score = 28.5 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ E + KKK+KKKK+K + K KK E+ +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
K + KKKKK+KKKK + K KK
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 26.9 bits (60), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 292 IVDTEIL--IREKRERKRRKKKKKRKRKRKKRKEKEKKKKK 330
VD +IL + K E KKKKK+K+K+ + K KK
Sbjct: 5 EVDMQILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKK 45
Score = 26.6 bits (59), Expect = 5.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK+KKKK+KK + K KK + +
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSEGA 55
Score = 26.6 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K + KK+KKKK+KK K K+ E +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|224631 COG1717, RPL32, Ribosomal protein L32E [Translation, ribosomal
structure and biogenesis].
Length = 133
Score = 29.6 bits (67), Expect = 1.0
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
E++ + ++ KRK+ KR+E ++ K+ +K +R + K R+K K K
Sbjct: 7 ERKRLLKIRRVLKRKKPEFKRQESDRYKRLGEKWRRPRGIDSKMRRKLKGK 57
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K K K K KKK++ KK K KK + + +K KK
Sbjct: 5 ALKVKAKGPAAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKK 49
Score = 27.8 bits (62), Expect = 2.1
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K K + KKK+K KK + K KK + + +K +K K EK
Sbjct: 4 GALKVKAKGPAAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKKVLTSGLNKSTEK 61
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ER KK K K E + + + + KR+ +R++ KR+ K++K
Sbjct: 267 IAREERLA-KKGKDHGESEGKVVAPEGAVAQTTEVREQTKRQTVQRQQPKRQSRAKRQKG 325
Query: 360 KKK 362
Sbjct: 326 GAA 328
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 31.1 bits (70), Expect = 1.1
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK---KKKRKKKRKKKKRKKKKRKKEEKKK 357
+E ++ KK+ +K ++ + K K K+K ++K K K+++
Sbjct: 180 RNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDG 239
Query: 358 KKKKKKKKEKRK 369
K+ K+ EK K
Sbjct: 240 DKQTKRNSEKSK 251
Score = 31.1 bits (70), Expect = 1.2
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
T + I + ++ K+ +K+ K R+ + K K K K +E
Sbjct: 169 THVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKE 228
Query: 355 KKKKKKKKKKKEKRKKR 371
K K KK + +K+ KR
Sbjct: 229 KDKNIKKDRDGDKQTKR 245
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKK-----RKKKKRKKEEKKKKKKKKKKKEKRKK 370
RK++K+KE KK K +++ R++ + KK +++ + K +++ K + +K+K KK
Sbjct: 11 RKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKK 68
Score = 27.6 bits (62), Expect = 2.6
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
RK +KKK+ +K K +++ +E K K+ + +++ K K +++ K +K+K KK
Sbjct: 10 YRKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKKL 69
Query: 364 KKE 366
+K+
Sbjct: 70 EKD 72
Score = 27.2 bits (61), Expect = 3.3
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R+++KKK +K K ++ ++ K KK + +R+ K K ++ + + +K+K KK E
Sbjct: 11 RKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKKLE 70
Query: 367 KR 368
K
Sbjct: 71 KD 72
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 31.2 bits (71), Expect = 1.1
Identities = 18/120 (15%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 252 EKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK 311
E L+ R + E ++ S V + + + + ++ +KR +
Sbjct: 602 ETELRER----LQQAEEALQS--AVAKQKQAEEQLVQANAELE-----EQKRAEAEARTA 650
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ R +R + E++ K K + +RK++ + ++ + K+ ++++ + K
Sbjct: 651 LKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKD 710
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
R + E RR+ RK K+ + ++++R +
Sbjct: 9 RREAEAARRRPLVPEDRKAAKKAARAARRERRAR 42
>gnl|CDD|218270 pfam04795, PAPA-1, PAPA-1-like conserved region. Family of
proteins with a conserved region found in PAPA-1, a
PAP-1 binding protein.
Length = 89
Score = 28.9 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 304 ERKRRKKKKKRKRKR--KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
E + ++ + R+RK +KR E+EK + K K++ +RKK++ K KK +++ ++K +
Sbjct: 1 EMQLKRAEAARRRKNQSEKRAEEEKMETINKLLKKQARRKKREDKIKKGDEKKAQEKAAR 60
Query: 362 KKK 364
+K
Sbjct: 61 AEK 63
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/67 (23%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK-KKRKKKKRKKKKRKKEEKKKKK 359
E ++K +K+ K +K KEK ++++ ++ + +K ++++R+ +K+EE+++
Sbjct: 116 ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMN 175
Query: 360 KKKKKKE 366
K+K K+
Sbjct: 176 KRKNKQA 182
Score = 29.8 bits (67), Expect = 2.4
Identities = 13/65 (20%), Positives = 41/65 (63%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+KK + +++ K +K K+K R++++ ++ + +K ++++R+ +K++++++ K
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 366 EKRKK 370
K K+
Sbjct: 177 RKNKQ 181
Score = 29.8 bits (67), Expect = 2.5
Identities = 9/50 (18%), Positives = 34/50 (68%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+I++ +E+ R++++ + +++E+E+++ +K++ +++ K+K K+
Sbjct: 132 VIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
+R R KK + + KR+ + KE++++K+K
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|169983 PRK09579, PRK09579, multidrug efflux protein; Reviewed.
Length = 1017
Score = 31.0 bits (70), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 246 SNQMRREKALKRREAMERA 264
+NQ+R E+ L RREA+E A
Sbjct: 922 ANQLRHEQGLSRREAIEEA 940
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 29.6 bits (67), Expect = 1.2
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
ER++++ +K ++++ + + K+ + ++K R K K+ + +KK K+E +K + ++
Sbjct: 32 ERQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQE 91
Query: 364 KKEKRKK 370
+++KR K
Sbjct: 92 QEKKRMK 98
Score = 29.2 bits (66), Expect = 1.7
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK----KRKKKKRKKKKRKKEEKK 356
E+R+ + ++ KR R +K + K K+ + +KK K K + + ++KKR K EK+
Sbjct: 43 EQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKE 102
Query: 357 KKKKKKKKKEK 367
++++K +K+E+
Sbjct: 103 EQEQKHQKQER 113
Score = 27.3 bits (61), Expect = 6.9
Identities = 15/59 (25%), Positives = 41/59 (69%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
R + E+K R K K K +K++ K++ +K + ++++KKR K +++++++K ++++++
Sbjct: 56 RIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQERE 114
>gnl|CDD|203922 pfam08377, MAP2_projctn, MAP2/Tau projection domain. This domain is
found in the MAP2/Tau family of proteins which includes
MAP2, MAP4, Tau, and their homologs. All isoforms contain
a conserved C-terminal domain containing tubulin-binding
repeats (pfam00418), and a N-terminal projection domain
of varying size. This domain has a net negative charge
and exerts a long-range repulsive force. This provides a
mechanism that can regulate microtubule spacing which
might facilitate efficient organelle transport.
Length = 1134
Score = 30.9 bits (69), Expect = 1.2
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 286 MDLIDVIVDTE----ILIREKRER--KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
MD + VDT+ ++ E+ E K + +K+ +R ++ KEK K + + +
Sbjct: 1012 MDADSLWVDTQDDDRSILTEQLETIPKEERAEKEARRPSLEKHRKEKPFKTGRGRISTPE 1071
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
RK K++ ++E ++KK KK E KK
Sbjct: 1072 RKVAKKEPSTVSRDEVRRKKAVYKKAELAKK 1102
Score = 29.0 bits (64), Expect = 5.1
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ E++ R+ ++ RK K K + ++K KK+ R + +RKK KK +
Sbjct: 1040 ERAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKAVYKKAEL 1099
Query: 361 KKKKK 365
KK +
Sbjct: 1100 AKKSE 1104
Score = 28.6 bits (63), Expect = 7.4
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK---KRKKKKRKKKKRKKEEKK 356
R ++E +R +K RK K K +RK K++ R + +RKK KK E
Sbjct: 1041 RAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKAVYKKAELA 1100
Query: 357 KKKKKKKKKEKRK 369
KK + + RK
Sbjct: 1101 KKSEVQAHSPSRK 1113
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 30.4 bits (69), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KE E+ +K+ K+ KK+K+KKR K KK +++ KK +
Sbjct: 31 KEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEH 77
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 27.6 bits (62), Expect = 1.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++++ R++ KK +KKKK K + K K
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 25.2 bits (56), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+R++ +E+ KK +KKKK K + K K
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/87 (12%), Positives = 29/87 (33%)
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ L + I + + ++ K K KK + KK K +++++
Sbjct: 3 MIALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGA 62
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +K+ E + + +
Sbjct: 63 LINELKKEVEDAITELTPELEAAGLWE 89
Score = 29.5 bits (67), Expect = 2.9
Identities = 6/67 (8%), Positives = 25/67 (37%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ ++ ++ K+ K +E+++ + K++ + + +
Sbjct: 29 ELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLW 88
Query: 356 KKKKKKK 362
++ +K
Sbjct: 89 ERLAFEK 95
Score = 28.7 bits (65), Expect = 4.8
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKK-KRKRKRKKRKEKEKKKKKRKKKK 335
L K + I++ D + E + + KK K+ + +++K+
Sbjct: 5 ALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGAL- 63
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ +K+ + + E + ++ EK
Sbjct: 64 INELKKEVEDAITELTPELEAAGLWERLAFEK 95
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.8 bits (69), Expect = 1.3
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V + E L RE + R RR K+KR + K K+ K +K +K+
Sbjct: 490 VAMSKEELTREDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLSKANITVINQKGEKK 549
Query: 351 KKEEKKKK 358
K KK
Sbjct: 550 DVSGKTKK 557
Score = 29.3 bits (65), Expect = 3.7
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKK-KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K E R K + R+ ++KR + KR K+ K +K EKK
Sbjct: 494 KEELTREDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLSKANITVINQKGEKKDVSG 553
Query: 361 KKKK 364
K KK
Sbjct: 554 KTKK 557
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 30.0 bits (68), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K + KK K+K K +KR E +K ++ K K E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K R K + K++++K ++ K+ + +K R+ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.8 bits (65), Expect = 2.7
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKK 328
+ K+E+++ +K +KR + +K + K K
Sbjct: 38 YQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.8 bits (65), Expect = 2.9
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ++ K + KK K+K +K +++ + +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.4 bits (64), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
K + KK KEK +K +KR + K R+ K +
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.0 bits (63), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
K + K+ K+K ++ RKR EK ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.7 bits (62), Expect = 6.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K + KK K+K K ++ + +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 30.8 bits (71), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 278 LRDAF----AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKK 320
++DAF ++ +L + + E I+ + R R KK KRK+K
Sbjct: 354 VKDAFDLWLNQNPELAEKLA--EKAIKAAQARLRAAKKVKRKKKTSG 398
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.9 bits (70), Expect = 1.3
Identities = 8/58 (13%), Positives = 29/58 (50%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ V D E+L + +E +++ ++ R++ K ++ + ++ ++++K+
Sbjct: 681 VRVRYDKELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 29.8 bits (67), Expect = 3.0
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ ++ ++K + R++ K KR + +++ R+K+K+
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQT 736
Score = 29.8 bits (67), Expect = 3.2
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + ++K E+ ++K K K+ + ++ +E++K+
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 28.6 bits (64), Expect = 6.0
Identities = 9/57 (15%), Positives = 26/57 (45%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R R K+ K ++ +++ ++ +++ K K+ + + + EK+K+
Sbjct: 682 RVRYDKELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 30.9 bits (70), Expect = 1.3
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ERK+ KK +++K +K KK K + +KK + K E + K+
Sbjct: 194 KAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLEAQSKELW 253
Query: 361 KKKKKEKR 368
K K+
Sbjct: 254 SLKDDLKK 261
Score = 30.5 bits (69), Expect = 1.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK K+++ ++RK++ +K KRKK+ K KK K ++
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDR 225
Score = 30.5 bits (69), Expect = 1.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E +E K ++K++ K+ K++K+ K +K K + +KK E K + +
Sbjct: 189 EAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLEAQ 248
Query: 361 KK 362
K
Sbjct: 249 SK 250
Score = 29.0 bits (65), Expect = 5.4
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKK-----RKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KK ++ K + K++ KK K+KK K K+ K R +KK +
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 364 KKEKRKK 370
K E + K
Sbjct: 244 KLEAQSK 250
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 30.9 bits (70), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+KKKKK+K+ K+ + KK +RKK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 30.1 bits (68), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K+K+K+KK+ KE + KK +RKK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 30.1 bits (68), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKK-KKKKEKRKKR 371
KKK+KKKK+ K+ + KK +RKKR
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKR 44
Score = 28.6 bits (64), Expect = 5.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
KKK+K+K+K KE + KK ++K++ +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 28.6 bits (64), Expect = 6.2
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK+KKKK+K ++ + +K ++KK+ +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 28.2 bits (63), Expect = 8.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KKK+KKKK+ K + K+ ++KK+ E+
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFN 52
Score = 28.2 bits (63), Expect = 9.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K+K+KK+K+ K+ + +K ++KKR EE
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 27.8 bits (62), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
KKKKK+KKK K+ + KK ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 30.7 bits (68), Expect = 1.3
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ++K R+ ++ KR K ++ K +K++ +KR+K R++ +R+ K+K
Sbjct: 146 KNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAA 205
Query: 361 KKKKKEKRKK 370
KK KK
Sbjct: 206 KKAAAPSGKK 215
Score = 29.5 bits (65), Expect = 2.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R K E+ R K +K+ RKR+K +E+ +++ K+K KK KK K
Sbjct: 163 RLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAP 222
Query: 360 KK 361
K
Sbjct: 223 AK 224
Score = 28.4 bits (62), Expect = 6.1
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
RE + K + KR + K K ++KK+++ ++ KR K ++ + + +K++ +K
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRK 180
Query: 363 KKKEKRKKR 371
++K++ + R
Sbjct: 181 REKDRERAR 189
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 30.4 bits (69), Expect = 1.3
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K ER +++ K+K K EK + K K+ K++ KKK K EK K KK
Sbjct: 103 KKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKIKK 162
Query: 361 KKKK 364
KK
Sbjct: 163 YFKK 166
Score = 29.3 bits (66), Expect = 3.3
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
I + K E K++ K K K KK +K K KK + K K K ++ K +
Sbjct: 137 NVINKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNK 196
Query: 355 KKKKKKKKKKK 365
K K K+K K
Sbjct: 197 KLKNKQKTLKN 207
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/72 (12%), Positives = 36/72 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++K+ + R +R+ + + + +E + K + + + ++K + K+ + + + +
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
Query: 360 KKKKKKEKRKKR 371
+ + + E+ + R
Sbjct: 362 ELEAELEELESR 373
Score = 29.6 bits (67), Expect = 3.1
Identities = 9/82 (10%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 292 IVDTEILIREKRERKRRKKKK---KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ + + + E E +K+ + ++K+ +++ +R+ + + + ++
Sbjct: 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
Query: 349 KRKKEEKKKKKKKKKKKEKRKK 370
+ K +E ++ + ++K + K
Sbjct: 329 ESKLDELAEELAELEEKLEELK 350
>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein;
Provisional.
Length = 599
Score = 30.6 bits (69), Expect = 1.4
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
DV D EI E + +RR K + K KR K ++K+ ++ +K K KK + +RKK
Sbjct: 30 NDV-SDEEI---EAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKM 85
Query: 349 KR 350
R
Sbjct: 86 SR 87
Score = 30.2 bits (68), Expect = 1.9
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
D+ D ++ E L E+R K R K K+ K ++KK ++ +K K KK + +RKK R
Sbjct: 31 DVSDEEIEAEDL--ERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSR 87
Score = 28.6 bits (64), Expect = 6.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+R K R K ++ K+R+KK ++ +K K KK + +RKK
Sbjct: 44 RRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKK 84
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 30.1 bits (68), Expect = 1.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ KK ++RK K+ EKE +++ + + +RK + +++ +EKK+ + K+
Sbjct: 104 DQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKE 160
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ K+ +R+ +K+ K R+E + + + ++K + +R+ K+KK
Sbjct: 105 QTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKK 154
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN. This model
represents MviN, a family of integral membrane proteins
predicted to have ten or more transmembrane regions.
Although frequently listed as a virulence protein, it is
not restricted to pathogens and it is an essential
protein in Sinorhizobium meliloti. In a number of
species its gene is adjacent to that of the
uridylyltransferase GlnD , the signal-transducing enzyme
that performs the key modification to the nitrogen
regulatory protein PII [Unknown function, General].
Length = 502
Score = 30.8 bits (70), Expect = 1.4
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 4 YSHIDIRT--FAATLSNVSTTSVSLLPLFQI----IAIISIMFIVLSTVALTLNTIPSLQ 57
Y+ D RT + +S V +SLL +F + IA+ + ++S+V L L L+
Sbjct: 371 YARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLK 430
Query: 58 HKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKG--GLNVIDLLAIMPY 115
G KL I A L + + K GL I L+ ++ Y
Sbjct: 431 GILPFGVLKVLAKLVIASA-----IIGGVLYLIVSVSLGGVLVKNLLGLLAIGLIGLLVY 485
Query: 116 YISLFLL 122
++ L LL
Sbjct: 486 FLGLALL 492
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 30.2 bits (68), Expect = 1.4
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E R+ + ++ K++ + +K+ K K+ K K++ + KK++ ++ K E KKKKK
Sbjct: 13 ELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKK 72
Query: 361 KKKKK 365
KK+K
Sbjct: 73 FKKEK 77
Score = 29.4 bits (66), Expect = 2.5
Identities = 18/67 (26%), Positives = 39/67 (58%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ RK + ++ +++ + +K+ K ++ K +KR+ + +K++ + + + KKK
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70
Query: 361 KKKKKEK 367
KK KKEK
Sbjct: 71 KKFKKEK 77
Score = 28.3 bits (63), Expect = 7.2
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K KR K +++E + KK++ ++ K + KKK+K KK K + + K KK
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R+ + K+ + R EK KK+ + + K +KRK E KK K
Sbjct: 249 RELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRKGYEDDTYISKKAK 305
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.5 bits (70), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ EK +K K K+ KK RK +++K + R + KK K ++K KE+
Sbjct: 205 NDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEE 262
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
RKRK K+ K+ K++K+KR
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K+K K+ KK KK+K+KR
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 28.9 bits (65), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
RKRK K+ KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 28.1 bits (63), Expect = 6.8
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+KRK K+ K+ +K+K+++
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 28.1 bits (63), Expect = 7.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+KRK K+ ++ KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 30.1 bits (68), Expect = 1.5
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR-KKKKRKKE------EKKK 357
K + ++K+K +RKK ++ K+ +K KK+ KK K KK ++K R+K+ EK
Sbjct: 88 EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSS 147
Query: 358 KKKKKKKKEKRKK 370
+ K+ EK KK
Sbjct: 148 SGAQPKEAEKLKK 160
Score = 30.1 bits (68), Expect = 1.7
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK-------KKRKKKKRKK 352
REK++ +R+K + KR +K +KE KK K KK +K R+K +K + K
Sbjct: 94 REKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPK 153
Query: 353 EEKKKKKKKKKKKE 366
E +K KKK + K
Sbjct: 154 EAEKLKKKAAQCKT 167
Score = 29.8 bits (67), Expect = 2.0
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
E + + R+++K+++K+ KR +K KK+ +K K KK ++K R+K K ++
Sbjct: 84 REEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAY 143
Query: 355 KKKKKKKKKKKEKRKKR 371
+K + K+ ++ K+
Sbjct: 144 EKSSSGAQPKEAEKLKK 160
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 29.2 bits (66), Expect = 1.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
IR+ E ++ +K R K + ++ E + K + K++ KKKR
Sbjct: 73 IRKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKR 124
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
RK ++ EK+ +K + K + K+ + + K +E K++ KKK +
Sbjct: 74 RKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGRG 128
Score = 27.6 bits (62), Expect = 5.5
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK +E+ +K+ +K + K R K+ + + + ++ K++ +KKR
Sbjct: 74 RKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKR 124
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 30.1 bits (68), Expect = 1.5
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ + V E ++ + R K + R RKEK RK + K++
Sbjct: 30 KLLFSEWTVRLEGRFKDNNDLIRDKFDSLAEEPRVLRKEKYNIT--RKTTGKNDLPKEED 87
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ E + K+ K+K+
Sbjct: 88 SSLPSSKETENGDTEGKETDKKKKSS 113
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 29.1 bits (66), Expect = 1.5
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 295 TEILIREKRERKRRKKKKK-RKRKRKKRKEKEKKKKKRKKKK-RKKKRKKKKRKKKKR 350
T I+++ + ER + K ++K +R + K E E +KK+ K K R + ++ RK+K R
Sbjct: 44 TGIVVKCQEERSQHKNREKALERLKAKLYEAELQKKREKTKPTRASQVRRGDRKEKIR 101
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 28.8 bits (64), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ KK ++K + KK K KK +K +K + KK KK + K
Sbjct: 44 HHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
Score = 28.1 bits (62), Expect = 2.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K K++ +K E+K + KK + KK +K +K + K+ KK K K
Sbjct: 40 AKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 29.5 bits (67), Expect = 1.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K KKKK K RK K+ + + + +++K ++ +K+ + R
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 28.8 bits (65), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K K KK+K K +K K+ R R K KKK + E++ + +
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 28.8 bits (65), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 329 KKRKKKKRKKKRK-KKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K +KKK K RK K+ + + K +KKK E+ +KR
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKR 44
Score = 28.0 bits (63), Expect = 5.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKK-RKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K K +K+K K +K K+ + R K +KKK ++ +++ E +
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDR 50
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 28.1 bits (63), Expect = 1.5
Identities = 14/37 (37%), Positives = 29/37 (78%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K K+K+ K +++KR++EE+ +K++++K++EK K
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 27.3 bits (61), Expect = 2.6
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K KKK+ K + +K++ +++ RK+EE+K+++K K
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.9 bits (60), Expect = 3.6
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K +KK+ + +EEK++++++ +K+E+RK+R
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKER 51
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKK 328
+E + + ++++++ RKR++RKE+EK K
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.7 bits (69), Expect = 1.5
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
RK ++++E K K KK++RK+K+ +K+ + K +K+ K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 29.5 bits (67), Expect = 1.6
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK---KRKKEEKKKKKK 360
+K + KK++ EKK KK + + +K +K K K+KK +K+ +
Sbjct: 4 LSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 27.2 bits (61), Expect = 9.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
I R+ R KK+ ++K +K + + KK KK + K+KK+ K
Sbjct: 3 ILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEK 55
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.7 bits (67), Expect = 1.6
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ + +++ EK K + +R K +KKK + K ++E + +
Sbjct: 57 IEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRS 116
Query: 361 KKKKKEKRKK 370
K+ + K K
Sbjct: 117 KQAEDGKLVK 126
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 30.5 bits (69), Expect = 1.6
Identities = 11/66 (16%), Positives = 27/66 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ R ++ K + + + K + + K +++ ++R EE K+ K+
Sbjct: 876 DTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKE 935
Query: 362 KKKKEK 367
+ K K
Sbjct: 936 YQDKHK 941
Score = 29.7 bits (67), Expect = 2.7
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
I DT+ IR + + + + + + + + K + K + + + KR
Sbjct: 874 IGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRA 933
Query: 352 KEEKKKKKK 360
KE + K K
Sbjct: 934 KEYQDKHKG 942
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 30.7 bits (69), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K R E K KK +KKK KKK K + +++ EEK
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K ++ K K +K + + + KK +E KK+K+K+K++ E +K
Sbjct: 408 KNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEK 466
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 30.5 bits (69), Expect = 1.7
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R +E RR R +++ ++ E++++ RK+KK K KR ++ E K
Sbjct: 971 RTPQELARRCDTLIRLIEKENQEYDERERQARKEKKLAKNATPSKRPSGRQANESPSSLK 1030
Query: 360 KKK 362
K+K
Sbjct: 1031 KRK 1033
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.4 bits (69), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 317 KRKKRKEKEKKKKKRKKKK 335
KRK+ +K++KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 29.6 bits (67), Expect = 2.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 347 KKKRKKEEKKKKKKKKKKK 365
K+KR+ ++K+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 6.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 346 KKKKRKKEEKKKKKKKKKK 364
K+K+ +++KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 29.8 bits (67), Expect = 1.8
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK---RKKKKRKKKKRKKEEKK 356
R +RE++ KK K E E K + + + K + K K + +E K
Sbjct: 130 RYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESK 189
Query: 357 KKKKKKKKKEKRKK 370
KKK K K+ +++
Sbjct: 190 KKKYIDKYKKLKEE 203
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 29.7 bits (67), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+KKKK + K RK+ KRK +K+K
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 29.3 bits (66), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++KKK + K +KR K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 28.9 bits (65), Expect = 3.0
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR--------------- 345
++++K R K RKR KRK+++KK K KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKNWDKKKTLAQNYKRLGLAADPN 60
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + K + KK E R +R
Sbjct: 61 TAARTDLLIQDKPIPELKKGEARIER 86
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 30.0 bits (68), Expect = 1.8
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 298 LIREKRERKRRKKKKKRKRKR-KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
L R+R KK+ + K K ++ K+++ + +++ R++ K+K E+
Sbjct: 290 LQELIRKRDHLKKEIIALYGQVAKAKGTPLYERLEKRRREVRNERQRLRRELKKKIREEF 349
Query: 357 KKK 359
++
Sbjct: 350 DEE 352
>gnl|CDD|107164 PHA02277, PHA02277, hypothetical protein.
Length = 150
Score = 29.3 bits (65), Expect = 1.8
Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 241 GKMIGSNQMRREKALKRRE-AMERAKREGSIVSFHHV-----NLRDAFAKSMDLIDVIVD 294
GK + ++ + R ++E A R +++ + DAF ++DL+ +I++
Sbjct: 31 GKQVDEKTAKQLDRIGSRSVSLEEATRIAKVLNAVTAQEVTGDFNDAF-NAIDLMMIIME 89
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
E+ + ++ K + K K EK++ K+K+ + ++K+++ +KK + +
Sbjct: 90 DELGVTQE------------KVGKAKDKLNEKREAYLKEKQEELRQKQQEEAQKKTESDS 137
Query: 355 KKKKKKKKKKKEK 367
+K + KK E+
Sbjct: 138 NEKVIQLKKNDEQ 150
>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional.
Length = 218
Score = 29.8 bits (67), Expect = 1.8
Identities = 14/62 (22%), Positives = 36/62 (58%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
++R K E K + K K +R ++ + K++ ++ KK+ + +++ ++ +K +E K +
Sbjct: 157 VVRRKIEGKNKTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNE 216
Query: 358 KK 359
K+
Sbjct: 217 KR 218
Score = 28.2 bits (63), Expect = 5.6
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R+ + + K K K +R ++ ++K++ +K +KK + ++ K+ +K E+ K +K+
Sbjct: 159 RRKIEGKNKTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218
Score = 28.2 bits (63), Expect = 5.6
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
RRK + K K K K + ++ ++K++ +K KKK + ++ KE +K ++ K +K
Sbjct: 159 RRKIEGKNKTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEK 217
Score = 27.9 bits (62), Expect = 6.7
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+RK + K K K K +R ++ +RK++ RK +KK + +++ KE +K
Sbjct: 159 RRKIEGKNKTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQK 208
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.4 bits (69), Expect = 1.9
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 300 REKRERKRRKKKKKRKRK---RKKRKEK--EKKKKKRKKKKRKKKRKKKKRK 346
RE+ E + K + K++RK R+ RK+ ++K ++KK++ + KK ++
Sbjct: 746 RERAELNKLKAQLKKERKGAMRELRKDNRFIAREKLKEKKEKDAEYHKKMKR 797
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 30.2 bits (68), Expect = 1.9
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK + K ++K+ + +K K + E K + K K K
Sbjct: 9 KKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEK 59
Score = 29.1 bits (65), Expect = 4.3
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K+ K K +RK+ + KK K + + K + + K
Sbjct: 6 KATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKE 58
Score = 28.7 bits (64), Expect = 5.8
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K K KK + K +++K+ + KK + + + K + K K+K
Sbjct: 3 KASKATKKFTKNHLKNT-IDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEK 59
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 29.7 bits (67), Expect = 1.9
Identities = 16/77 (20%), Positives = 40/77 (51%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+T L+RE + K+ + ++K + + +K E+EK +++ K K+R +
Sbjct: 143 ETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILTGNPLLNTSGDFKVKRRWDD 202
Query: 354 EKKKKKKKKKKKEKRKK 370
+ K + + +++K+K+
Sbjct: 203 DVVFKNQARGEEKKKKR 219
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 29.7 bits (67), Expect = 1.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
RK+ ++K++ +++++ K+ +K E KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+K K+K++ ++RK+ K+ +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE---------EKKKKKKKKKKKEK 367
RKK KEK+++ K +KK+ +K ++ K K+ E + KKKK K K
Sbjct: 161 LRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAKSK 220
Score = 28.9 bits (65), Expect = 3.3
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 304 ERKRRKKKKKRKRKRKKRKEK--EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
E R+K+K+K+++ + ++K+ EK + K K+ + + KKKK K
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAK 218
Query: 362 KKKKE 366
K +E
Sbjct: 219 SKYEE 223
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 1.9
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
DTE+ + +R + ++ K+ K + ++K+KKK KKK +KKK K + K K KE
Sbjct: 368 DTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKE 427
Query: 354 EKK 356
+
Sbjct: 428 ATR 430
Score = 28.3 bits (64), Expect = 8.0
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R ++ +++ K+ K + ++++KKK KKK KKKK K + K + K+ +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATR 430
>gnl|CDD|182116 PRK09856, PRK09856, fructoselysine 3-epimerase; Provisional.
Length = 275
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 226 MTTVGYGDICPTT---PLGKMIGSNQMRREKALKRREAMERAKREGS 269
M +GY P T P M+G MRRE + AM+ AK +
Sbjct: 61 MPIIGY---TPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNA 104
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 30.4 bits (69), Expect = 2.0
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E E+RE + + + + ++E+E ++ ++K K + + + K
Sbjct: 228 ETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Query: 356 KKKKKKKKKKEK 367
+KK ++ EK
Sbjct: 288 EKKDEELFWFEK 299
Score = 29.2 bits (66), Expect = 4.6
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K+ R KKK+ K +E+ KK++KK+K K + K+R
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKER 679
Score = 28.4 bits (64), Expect = 7.0
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
I E + K+ + K+K K + ++K K+++KK K KR++K+R
Sbjct: 633 ISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKER 679
Score = 28.4 bits (64), Expect = 7.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
E K K+ + +K+K+ K +K +K++KK+K K++EK
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 27.8 bits (62), Expect = 2.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK-KKRKKEEKKKKKKKKKKKEKR 368
++ K K K KEK K +K K ++ K+ + + KK+KK +K K+K K K++
Sbjct: 20 EEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKES 79
Query: 369 KK 370
+
Sbjct: 80 NE 81
Score = 27.0 bits (60), Expect = 4.3
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
K + K K+ K ++ KE K + +KKKK KK K+K K KK E
Sbjct: 34 KEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 27.0 bits (60), Expect = 4.7
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K++ EK K+K + KK K + K K + KK++K KK K+K + +K+
Sbjct: 20 EEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKES 79
Score = 26.6 bits (59), Expect = 6.6
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+K +K K K K K+ K ++ K+ + + +KKKK KK ++K K KK+ +
Sbjct: 28 EKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
>gnl|CDD|182577 PRK10595, PRK10595, SOS cell division inhibitor; Provisional.
Length = 164
Score = 29.2 bits (66), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 239 PLGKMIGSNQMRREKALKRREAMERAKREG--SIV 271
PL K++ +Q+ + EAMERA R G S+V
Sbjct: 79 PLTKVMQLSQLSPCHTV---EAMERALRTGNYSVV 110
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 28.6 bits (64), Expect = 2.2
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK--------KRKKEEKK 356
KR +K+ K + KKK+++KK KR ++++K++KK +++
Sbjct: 27 AKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSKKRA 86
Query: 357 KKKKKKKKKEKRKK 370
K + K +KRK
Sbjct: 87 KSIGRAKYVKKRKA 100
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.2 bits (68), Expect = 2.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKK 327
RK++KKKK +++K+KK +E K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.2 bits (68), Expect = 2.3
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKR 350
+KK+KKKK K+K+KKK R+ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKK 358
RKKK+KKK ++KKK+K E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.5 bits (66), Expect = 4.1
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKE 353
RKKKK+KK ++KKK+K ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.1 bits (65), Expect = 4.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKK 329
R+KKKKK+ +++KK+K +E K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 5.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKK 364
+KK+KKKK K+++KKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 6.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKR 340
RKK+K+K+ K+KK+KK + K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 7.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKK 359
+KK+KKKK K+KK+KK + K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 8.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKR 345
K+KKKKK K+KK+KK R+ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ ++K ++ EK K ++K K KKK K + +++ +K+ + KE K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 260
Score = 29.6 bits (67), Expect = 2.2
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 155 ILRILKLARHSTGLQSLGFTL-RNSYKELGLLMLFLAMGVLIFSSLAYFAEK 205
+ R L A L L R K L L+L A+ + +F L + A K
Sbjct: 22 VFRRLIFA----LLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVK 69
>gnl|CDD|224510 COG1594, RPB9, DNA-directed RNA polymerase, subunit M/Transcription
elongation factor TFIIS [Transcription].
Length = 113
Score = 28.6 bits (64), Expect = 2.2
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 308 RKKKKKRKRKRKKRK-EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+K + K +K E+E KK + K+ +KKK + E + K K++
Sbjct: 15 KKDDEGGKLVCRKCGYEEEASNKKVYRYSVKEAVEKKKEVVLVVEDETQGAKTLPTAKEK 74
Query: 367 KRK 369
K
Sbjct: 75 CPK 77
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 29.1 bits (65), Expect = 2.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++++ EK+ ++ ++ R+ +KKKK +K K E + K+K
Sbjct: 57 GEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
Score = 28.7 bits (64), Expect = 3.9
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
E +++K +K ++ ++ R+ K+KK+ +K K++ + KRK
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
Score = 27.5 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKK-KRKKKKRKKKRKKKK 344
I E +E K K ++ ++ R+ +KKKK +K +++ R K+K
Sbjct: 56 IGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
Score = 27.5 bits (61), Expect = 9.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ ++EK +K +K ++ + KK+KK +K K++ + K+K
Sbjct: 58 EAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 28.3 bits (63), Expect = 2.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + ++K+ EK K + KKK KK+KK++ ++ EE K +K+ +E+
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 27.6 bits (61), Expect = 4.4
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + KEK+ +K K K KKK KKK+K++ R+ ++ K +KE ++R
Sbjct: 2 APKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 26.8 bits (59), Expect = 8.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K + ++KK K K ++KKK KKKKK+E R
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 29.7 bits (67), Expect = 2.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E EK+ + + K+K++ KKK++ EE K +KK + K K+
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 28.9 bits (65), Expect = 4.0
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + +K+ + ++ KKK + + +KK+E ++ K +KK ++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQ 116
Score = 28.6 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K EKE + ++ KKK + + +KKK+ ++ + +KK + KEK+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 30.1 bits (68), Expect = 2.4
Identities = 8/54 (14%), Positives = 25/54 (46%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R R + + + + + + + K + K +++ + K + +R + K+ +K
Sbjct: 18 RSRSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSNQRVRNIVNKQLRK 71
Score = 29.8 bits (67), Expect = 2.5
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 308 RKKKKKRKRKRKKRKEKEKKK--KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + K R R + + + + K R K +R+ R K + ++ R K+ +K
Sbjct: 18 RSRSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSNQRVRNIVNKQLRK 71
Score = 29.0 bits (65), Expect = 5.3
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK--K 347
V V+ R R + R + + + + + K + K +R+ + K + ++ R
Sbjct: 8 QVTVEVNNNGRS-RSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSNQRVRNIVN 66
Query: 348 KKRKKE 353
K+ +K+
Sbjct: 67 KQLRKQ 72
Score = 28.6 bits (64), Expect = 7.2
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
R R K + + + + + + K + K R++ R K + ++ + K+ RK
Sbjct: 18 RSRSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSNQRVRNIVNKQLRK 71
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 29.9 bits (68), Expect = 2.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 31 QIIAIISIMFIVLSTVALTLNTIPSLQHKD 60
+I++I+ FI T+ L L +P H
Sbjct: 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQ 45
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 28.7 bits (64), Expect = 2.7
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKK--RKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
E+ + R+ +++RK K +K +E+ + ++ R K KKK + ++ + ++EE +
Sbjct: 37 EEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQAAAEEEEGRLG 96
Query: 359 KKKKKKKE 366
+KKK +E
Sbjct: 97 RKKKTPEE 104
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote Encephalitozoon
cuniculi, an obligate intracellular microsporidial
parasite. It is approximately 200 residues long.
Length = 230
Score = 29.4 bits (66), Expect = 2.9
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+K +KK K K K+ R +K +K +++ + EEK K + ++ KE++
Sbjct: 23 KKKGGKKKSKGGRHCYKIHKRVLRWRKSPEKIKEELDKGSEEKWKGRSIEEIKEQKV 79
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 29.1 bits (65), Expect = 2.9
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 286 MDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
M L DVI D E + R +KKK+ + KR EK +K+ K + K+ +KK R
Sbjct: 1 MSLEDVIKDIE--------KSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMR 52
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R K+ K + + KR+KR
Sbjct: 53 AEISRLKKSIIDKANIEARSIKREKR 78
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 28.9 bits (65), Expect = 3.0
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K + + KK E++ ++ + + ++ + KE K K K KK
Sbjct: 95 NEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKH 154
Query: 366 EKRK 369
+K K
Sbjct: 155 DKEK 158
Score = 28.5 bits (64), Expect = 3.3
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++ I + E K + + +K + + + K ++ + K K
Sbjct: 88 DLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLAT 147
Query: 356 KKKKKKKKKKE 366
K K KK K++
Sbjct: 148 KNKTKKHDKEK 158
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK---KRKKK 343
+L D+ + E I+ ++ + KK + +E + + ++ ++ K
Sbjct: 85 ELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVK 144
Query: 344 KRKKKKRKKEEKKK 357
K K KK +K+K
Sbjct: 145 LATKNKTKKHDKEK 158
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK + K K K+ + E+ KK +K KE +K
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEK 714
Score = 27.9 bits (62), Expect = 10.0
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E K K +K K EK KK K K+ +K+ K KK+
Sbjct: 673 LINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
>gnl|CDD|153369 cd07685, F-BAR_Fes, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma)
tyrosine kinase. F-BAR domains are dimerization modules
that bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Fes (feline sarcoma), also called Fps (Fujinami poultry
sarcoma), is a cytoplasmic (or nonreceptor) tyrosine
kinase whose gene was first isolated from tumor-causing
retroviruses. It is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells, and plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. Fes kinase has also been
implicated as a tumor suppressor in colorectal cancer.
It contains an N-terminal F-BAR domain, an SH2 domain,
and a C-terminal catalytic kinase domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules. The F-BAR domain of Fes is
critical in its role in microtubule nucleation and
bundling.
Length = 237
Score = 29.1 bits (65), Expect = 3.0
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+LIR+K++ ++ ++ + K++ K ++ +K K + R + + KRK +E
Sbjct: 102 LLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDS---AQAKRKYQEAS 158
Query: 357 KKKKKKKKKEK 367
K K + K KEK
Sbjct: 159 KDKDRDKAKEK 169
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 29.5 bits (67), Expect = 3.0
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 258 REAMERAKREGSIVSFHHVNLR----------DAFAKSMDLIDVIV----DTEILIREKR 303
EA+E AK G VSF +N R +A + + +D+++ + E L+ ++
Sbjct: 146 LEALEAAKARGVTVSF-DLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDED 204
Query: 304 ER 305
Sbjct: 205 PT 206
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 262 ERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRK 319
E A+ E I+ H L K + + + D E L+ ++R ++K + +
Sbjct: 68 ELAEGENVIIDGHLAELELERFKDLVFVVLRADPEELLERLKKRGYSEEKISENDEAE 125
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 29.4 bits (67), Expect = 3.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKK 339
R+ +R+KRK + K++R+K+
Sbjct: 478 RRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.9 bits (63), Expect = 9.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKK 349
+++KRK R K+R++K+
Sbjct: 481 RRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 29.5 bits (66), Expect = 3.2
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ ++K K K+ K K K K K++ + K KK K K +
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANL 512
Score = 29.5 bits (66), Expect = 3.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+ ++K K K+ + K K K KK+ + K KK K K K
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKAN 511
Score = 28.7 bits (64), Expect = 6.7
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ +KK K K+ K K + K KK+ + K KK + K K + +
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGEC 518
>gnl|CDD|219215 pfam06881, Elongin_A, RNA polymerase II transcription factor SIII
(Elongin) subunit A. This family represents a conserved
region within RNA polymerase II transcription factor
SIII (Elongin) subunit A. In mammals, the Elongin
complex activates elongation by RNA polymerase II by
suppressing transient pausing of the polymerase at many
sites within transcription units. Elongin is a
heterotrimer composed of A, B, and C subunits of 110,
18, and 15 kilodaltons, respectively. Subunit A has been
shown to function as the transcriptionally active
component of Elongin.
Length = 108
Score = 28.1 bits (63), Expect = 3.3
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
E +E + + R+ + +E+E+K K+ ++ K ++ K K R+
Sbjct: 50 FPESKEPLPEEPESWRELYLRLVEEREQKLKESGRRLTKNIKRANANKPKGRQA 103
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 29.5 bits (67), Expect = 3.3
Identities = 15/69 (21%), Positives = 21/69 (30%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
RD FA+ D DV+ + R K R K + +
Sbjct: 161 RDEFARPGDEYDVLEALPDSVASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAA 220
Query: 339 KRKKKKRKK 347
KK K+K
Sbjct: 221 AAKKAKKKA 229
>gnl|CDD|219348 pfam07248, DUF1431, Protein of unknown function (DUF1431). This
family contains a number of Drosophila melanogaster
proteins of unknown function. These contain several
conserved cysteine residues.
Length = 159
Score = 28.6 bits (64), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKK-----KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K KRK +R E +K KK K K++KRKKK R K+ + +
Sbjct: 22 DKAKRKYQRTWV-ECPPIMRKPKKVCCYDKAVPPPIKRRKRKKKPRTAPPKEPELNPMEC 80
Query: 365 KEKRKKR 371
+K
Sbjct: 81 LQKTATG 87
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 29.0 bits (65), Expect = 3.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KKK+K +K++ E++ K + + +E+RK
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRK 33
>gnl|CDD|218481 pfam05177, RCSD, RCSD region. Proteins contain this region include
C.elegans UNC-89. This region is found repeated in
UNC-89 and shows conservation in prolines, lysines and
glutamic acids. Proteins with RCSD are involved in
muscle M-line assembly, but the function of this region
RCSD is not clear.
Length = 101
Score = 27.9 bits (61), Expect = 3.4
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K K+ K +K K K +KEK +K ++ K KK+K +K +K KK++
Sbjct: 33 KSPEKKEKSPEKVDGKPKSPTKKEKSPEKSATEEVKSPTKKEKSPEKVEEKPASPTKKER 92
Query: 362 KKKKEK 367
+KKEK
Sbjct: 93 VQKKEK 98
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 29.6 bits (66), Expect = 3.5
Identities = 14/75 (18%), Positives = 37/75 (49%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
++D+ + L E++ RK + K ++ KK KK ++ +K+R + + + +
Sbjct: 329 YVLDIPLSDNSLRDEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDA 388
Query: 347 KKKRKKEEKKKKKKK 361
+ + E++K + +
Sbjct: 389 EDIEEAIEEEKNQSE 403
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/64 (15%), Positives = 36/64 (56%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K + + +R + E+E ++K+K++++ + +++ ++ ++ EK + +++K
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLA 261
Query: 366 EKRK 369
E+ +
Sbjct: 262 EQER 265
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/81 (13%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 293 VDTEILIREKRERK---RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
E I +R + +++ R++++++ + E +++ ++ ++ K + ++K
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKL 259
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
++E+ + K ++++E K+
Sbjct: 260 LAEQERMLEHKLQEQEELLKE 280
Score = 28.0 bits (63), Expect = 7.6
Identities = 14/73 (19%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKE 353
E+L +++E ++ + ++R + ++ EK + +R+K +++R + K ++++ +
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLK 279
Query: 354 EKKKKKKKKKKKE 366
E K + + +KE
Sbjct: 280 EGFKTEAESLQKE 292
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 29.2 bits (66), Expect = 3.6
Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 248 QMRREKALKRREAMERAKRE-GS---IVSFHHVNLRDAFAKSMDLIDVIVDTEILIR--- 300
++++ A REA+E+ ++E G I+S + + V+ L
Sbjct: 2 KIKKFTAESMREAIEKIRKELGEDAVILSNRRIKKG--GFLGLLFSKTAVEVTKLAAVDS 59
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E R+ + R+ K + + + K+ +KK++ +K +K +R ++K ++ + ++
Sbjct: 60 ELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEI 119
Query: 361 KKKKKE 366
+ ++
Sbjct: 120 AEMMRD 125
>gnl|CDD|225664 COG3122, COG3122, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 215
Score = 28.8 bits (64), Expect = 3.6
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 311 KKKRKRKRKKRKEK-EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
KK+ K +R +K + + ++ R + K + ++ K+ ++++ K+ K
Sbjct: 58 KKRAKVQRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYK 110
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 28.7 bits (64), Expect = 3.6
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+KK + K K K+ K K K RK K EEK ++
Sbjct: 37 RKKSAPEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVER 85
Score = 28.3 bits (63), Expect = 6.3
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
++K ++ K K KR K K K RK + + ++K +R
Sbjct: 37 RKKSAPEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVER 85
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.8 bits (65), Expect = 3.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KKKK KK++ K+ KKK + K E RKK
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKK 152
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ K + KRK+ KK +K K K + +K+R
Sbjct: 196 NKDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRR 244
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 28.3 bits (64), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ K KK + + R+ EK+KK R++ +K KK R KK +
Sbjct: 51 KAKPKKGISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKER 94
Score = 27.1 bits (61), Expect = 8.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 303 RERKR-RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
R R R R +K+K+ R+R K KK + KK+R R + R+ + ++E K
Sbjct: 60 RGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGK 114
>gnl|CDD|222418 pfam13853, 7tm_4, Olfactory receptor. The members of this family
are transmembrane olfactory receptors.
Length = 142
Score = 28.3 bits (64), Expect = 3.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 32 IIAIISIMFIVLSTVAL--TLNTIPSLQHKDKA 62
+ +FIV+S V + + IPS Q + KA
Sbjct: 64 FLGFGCFVFIVISYVQIFRAVLRIPSAQGRHKA 96
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 28.7 bits (64), Expect = 3.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K +++K KKK KEEK+ KKK++ K+E
Sbjct: 90 KNHLEEEKEKKKNLNKEEKEAKKKERAKREYP 121
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKK 334
++ +R++KR+++KEKE+ +K R++
Sbjct: 72 ERMDERRKKRREQKEKEEIEKYREEN 97
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
+I E+R + + + + + + +K +E+EK+ +KRK
Sbjct: 70 DIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 29.2 bits (65), Expect = 4.1
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K +++ + K K +R ++K+K K K K + +
Sbjct: 5 KSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAK 58
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 29.2 bits (66), Expect = 4.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKK 348
KKK+RKK+R+K+ ++ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
Score = 28.4 bits (64), Expect = 6.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEE 354
++KK+RKK++RK+ K +E+
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELRED 201
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 28.3 bits (64), Expect = 4.2
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K K + ++ K +K+ EE + + K+K E +
Sbjct: 33 KGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGKT 76
>gnl|CDD|227589 COG5264, VTC1, Vacuolar transporter chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 126
Score = 27.7 bits (62), Expect = 4.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 159 LKLARHSTGLQSLGFTLRNSYKELGLLM----LFLAMGVLIFSSLAY 201
L + L LGF L NS LG++ +A+ ++ + Y
Sbjct: 36 LSWLSVTVLLGGLGFALYNSGDRLGMISAYVFTIVAIFCGFYALMLY 82
>gnl|CDD|131664 TIGR02615, spoVE, stage V sporulation protein E. This model
represents an exception within the members of the FtsW
model TIGR02614. This exception occurs only in
endospore-forming genera such as Bacillus, Geobacillus,
and Oceanobacillus. Like FtsW, members are found in a
peptidoglycan operon context, but in these genera they
part of a larger set of paralogs (not just the pair FtsW
and RodA) and are required specifically for sporulation,
not for viability [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 354
Score = 29.0 bits (65), Expect = 4.3
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 184 LLMLFLAMG-VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGI 224
++ML +A+G V+++S+ AY+AE + + F + WA +
Sbjct: 7 VIMLLVAIGVVMVYSASAYWAEY-KFNDSFYFLKRQLLWAIL 47
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 28.3 bits (63), Expect = 4.4
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KR ++++ R++K + K+K+ K +EE+++ ++ ++ E+R++R
Sbjct: 85 GKRPHAGGFTDQERRDHRRRKALENKKKQLSSGGKHLSREEEEELRRLTEEDEERERR 142
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 29.0 bits (65), Expect = 4.4
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ ++ +K ++K+K+K++ + KEEK++ + +K+ ++
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 28.6 bits (64), Expect = 6.0
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R ++ + K ++K+KK+++ K K+E+++ + +K+ KE
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 27.8 bits (62), Expect = 9.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R ++ ++K ++K KKK+ K K +K+E + +K+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.8 bits (65), Expect = 4.5
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK-RKKEE 354
E+ E+ E +R K+K+ + K +E + + ++ K+ R + +R+K++ RKK E
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYE 240
Query: 355 KKKKKKKKKKKE 366
+K +++ +++ E
Sbjct: 241 EKLRQELERQAE 252
Score = 28.8 bits (65), Expect = 4.9
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK-KKKKKEKR 368
KK + ++ + + K+KR++ K + + R + K EK+ + + +++K+E R
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELR 236
Query: 369 KK 370
KK
Sbjct: 237 KK 238
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 298 LIREKRERKRRKKKKKRKRKRKK 320
+I + R+ K++++R R+RKK
Sbjct: 101 MIEALQGREGGKRRRRRPRRRKK 123
Score = 27.2 bits (61), Expect = 6.4
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 305 RKRRKKKKKRKRKRKKRK 322
+ R K++R+R R+++K
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 29.0 bits (65), Expect = 4.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
K +R ++ + R + K K+KKR K+
Sbjct: 424 KFRRTKRPEPRAAADTKSAAEKQKKRAKE 452
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 27.9 bits (62), Expect = 4.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +RK + KRK+ K+ R KK K K K ++ K+KKK
Sbjct: 6 KWRRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKK 60
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 28.7 bits (64), Expect = 4.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKK 328
+ ++L D E +REK ++K R K++K+ K +K KE E
Sbjct: 77 RKLELCDFTPIYEWHLREKEKKKSRTKEEKKALKEEKDKEAEPYM 121
Score = 28.3 bits (63), Expect = 5.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++K KKK R KEEKK K++K K+ +
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEPYM 121
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like. The
sequences found in this family are similar to a region
found in the beta-subunit of glucosidase II, which is
also known as protein kinase C substrate 80K-H (PRKCSH).
The enzyme catalyzes the sequential removal of two
alpha-1,3-linked glucose residues in the second step of
N-linked oligosaccharide processing. The beta subunit is
required for the solubility and stability of the
heterodimeric enzyme, and is involved in retaining the
enzyme within the endoplasmic reticulum.
Length = 176
Score = 28.2 bits (63), Expect = 4.6
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 305 RKRRKKKKKRKRKRKKRKEK---EKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ + + K KE +KK+ + KKR K+ + K++R
Sbjct: 127 EEYLTEHNNSVKNGLKIKEGLLLAAQKKRDELKKRLKELEDSLPAKQQRL 176
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.0 bits (65), Expect = 4.6
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 299 IREKRERKRRKKKKKRKRKR------KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+R++ E++ + K R RK K+ KE E + ++ + K R K K + + +
Sbjct: 131 VRDELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEEL 190
Query: 353 EEKKKKKKKKKKKEKRKKR 371
+K+ ++ +K+++R +R
Sbjct: 191 ANLRKELRQLEKEKQRLER 209
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 29.0 bits (65), Expect = 4.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
EKE KKK K+ + + K++KR+K+K+ K++
Sbjct: 127 EKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 28.6 bits (64), Expect = 6.4
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
R K KE +KK KR + + KR+K++++KK +K++
Sbjct: 121 DRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQD 159
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 28.9 bits (65), Expect = 4.6
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 265 KREGSIVSFHHVNLR-DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKE 323
+ G I H +R A A DL V ++ ERK+RKK+ K + + R
Sbjct: 25 NKGGDIAILHGEEMRLIADAPLDDLELV---------DESERKKRKKRFKERMETSYRLF 75
Query: 324 KEKKKKKRKKKKRKKKRKKKKRK 346
++ K ++KK+ + K +
Sbjct: 76 RQDYKLMKEKKEYRATGGYKNNQ 98
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 28.7 bits (64), Expect = 4.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRK-------KKKRKKEEKKKKKKKKKKKEKRKK 370
RKEK+ K+ K+KKKRKK K K K K + +K K K +
Sbjct: 151 HRKEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRKYEH 208
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar system
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 27.5 bits (61), Expect = 4.7
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+L EKR ++ + +KRK KR K+ ++E +K+ K K++++K K+ K +
Sbjct: 11 LLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAE 70
Query: 357 KK 358
+K
Sbjct: 71 EK 72
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 28.1 bits (63), Expect = 4.8
Identities = 11/83 (13%), Positives = 36/83 (43%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
D+ A++ + V + + +++ + ++ +E++K ++ K+K +++
Sbjct: 15 DSAAENDGKLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQE 74
Query: 340 RKKKKRKKKKRKKEEKKKKKKKK 362
K + + + K KK+
Sbjct: 75 ELKNQLFSENATENNTVKATKKQ 97
Score = 27.3 bits (61), Expect = 8.0
Identities = 10/67 (14%), Positives = 27/67 (40%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K ++ K+ E++KK +K ++K +++ + + + +
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNT 90
Query: 359 KKKKKKK 365
K KK+
Sbjct: 91 VKATKKQ 97
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 29.1 bits (66), Expect = 4.8
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK---K 333
LR A + L+D +V IL+ E +K K R+ + + E R K
Sbjct: 173 QLRAKQALKLGLVDDVVPHSILLEVAVELA-KKGKPARRPLPVRERLLEGNPLGRALLFK 231
Query: 334 KKRKKKRKK 342
+ RKK K
Sbjct: 232 QARKKTLAK 240
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This
model represents one subfamily of endonucleases
containing the endo/excinuclease amino terminal domain,
pfam01541 at its amino end. A distinct subfamily
includes excinuclease abc subunit c (uvrC). Members of
pfam01541 are often termed GIY-YIG endonucleases after
conserved motifs near the amino end. This subfamily in
This model is found in open reading frames of group I
introns in both phage and mitochondria. The closely
related endonucleases of phage T4: segA, segB, segC,
segD and segE, score below the trusted cutoff for the
family.
Length = 214
Score = 28.5 bits (64), Expect = 4.9
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + + K K +K K + K K K + + +K E+ KKK
Sbjct: 98 KHSEETKAKMSKLFSGKKNNPWYGKTHSEETKAKISKNKLGENNPFFGKKHSEETKKKIS 157
Query: 362 KKKKEKRKK 370
+K+K +K
Sbjct: 158 EKEKGAKKV 166
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain is
found associated with pfam06512, pfam00520. This domain
has a conserved ADD sequence motif.
Length = 222
Score = 28.6 bits (64), Expect = 4.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 302 KRERKRRKKKKKRK---RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
K R R K KK + + EKE K + +KR + +K RK
Sbjct: 12 KERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRKTRK 59
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 28.8 bits (64), Expect = 5.0
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRK 309
RR K R+ + + E S + + A K+ D + E R + K
Sbjct: 16 RRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDD-----MTIEEAKRRAAAAAKAK 70
Query: 310 KKKKRKRKRK-------KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K+KR+ + K K K K K + K+KR+ + EE+K K K
Sbjct: 71 AAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAK 130
Query: 363 KKKEKRKK 370
+ K
Sbjct: 131 AAAAAKAK 138
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 29.1 bits (65), Expect = 5.0
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
L E + K K + R +K E R RKK+ ++ + K
Sbjct: 458 SKLTIESAK-KYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDEDKIRS 516
Query: 356 KKKKKK 361
KK +
Sbjct: 517 LLKKLR 522
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 27.3 bits (61), Expect = 5.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation,
ribosomal structure and biogenesis].
Length = 125
Score = 27.8 bits (62), Expect = 5.1
Identities = 14/76 (18%), Positives = 25/76 (32%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ R + K R EK KK + K + K + KK ++
Sbjct: 43 KGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAAGVLAKLDKSAKNLETKKVREPL 102
Query: 355 KKKKKKKKKKKEKRKK 370
++ K K K ++
Sbjct: 103 TDAERFKVMKLVKEER 118
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.8 bits (64), Expect = 5.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+KR++RKEK ++ RK +K + +R+ K +R +E
Sbjct: 388 QKRQRRKEKFWRQHCRKARKEQAERRPIPGKGAERMRE 425
Score = 28.4 bits (63), Expect = 6.6
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 261 MERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKK 320
ER +RE S HV R A ID++ E ++R+RRK+K R+ RK
Sbjct: 361 NERDERESSTTRDVHV--RGA-------IDIVKGLE------QKRQRRKEKFWRQHCRKA 405
Query: 321 RKEKEKKK 328
RKE+ +++
Sbjct: 406 RKEQAERR 413
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 28.5 bits (64), Expect = 5.3
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+K+ E ++K + +K KK+ K+K+ K + E KK +KK +K
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS 145
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 28.8 bits (65), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 327 KKKKRKKKKR--KKKRKKKKRKKKKRKKEEKK 356
K+++K R K R++ + KKK RK + ++
Sbjct: 48 SKREKKPYPRPMKLLRREAREKKKLRKLQPER 79
Score = 28.1 bits (63), Expect = 9.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 318 RKKRKEKEKKKKKR--KKKKRKKKRKKKKRKKKKRK 351
+ ++EKK R K +R+ + KKK RK + +
Sbjct: 44 PRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPER 79
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.8 bits (60), Expect = 5.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKK 362
K+KK K+ KK EKKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKK 348
+KKK K+ KK KKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 28.8 bits (64), Expect = 5.7
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E+ E +R + ++ R + + K+ KK+K KK K +KR K + KK K
Sbjct: 36 EEEENQRLQLRQVISRFTSFESDDQANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIK 94
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.5 bits (61), Expect = 5.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKK 363
KK KK ++ ++K +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 27.2 bits (60), Expect = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKK 339
K K+ +E EKK ++K+KK
Sbjct: 53 KPKKISAEEAEKKLLQKKEKKALTN 77
Score = 27.2 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK KK ++ EKK +KK+KK R
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTNVLR 80
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 28.6 bits (64), Expect = 5.9
Identities = 10/69 (14%), Positives = 25/69 (36%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++ K +KK K+ K K +++ ++R++ + + K+
Sbjct: 259 ELQQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAAS 318
Query: 361 KKKKKEKRK 369
K+
Sbjct: 319 FKQNSATES 327
Score = 28.6 bits (64), Expect = 6.1
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+KK KK + + ++K R+++E + + K+ K+
Sbjct: 269 QKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFKQ 321
Score = 27.9 bits (62), Expect = 9.6
Identities = 7/60 (11%), Positives = 21/60 (35%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K ++K KK K K +++ ++ ++ + + K +
Sbjct: 261 QQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFK 320
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 27.8 bits (62), Expect = 5.9
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++ + +R + K++ K K+ ++K KE ++ R + KK +
Sbjct: 97 DEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRV 139
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 28.0 bits (63), Expect = 6.0
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 296 EILIREKRERKRRK------KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
EI +K E K ++ KR + K+ E+E ++ ++K K +K ++ K K +
Sbjct: 35 EIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKAR 94
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
K+ EK+ K K + + ++
Sbjct: 95 LKELEKELKNLKWESEVLEQR 115
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 28.7 bits (64), Expect = 6.1
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
T +E+ E +R K RK+ ++ + K+ K++ K + R + K
Sbjct: 347 TWKYFKERCEDRRAYMKIIRKKYLNEQLSADLSKELEKRELTYDLIKYRSRLFRSLAKRR 406
Query: 355 KKKKKKKKKKK 365
K + K
Sbjct: 407 NSIYLKPQTHK 417
>gnl|CDD|220653 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28. This
domain is a region of 70 residues conserved in proteins
from plants to humans and contains a serine/arginine
rich motif. In rats the full protein is a casein kinase
substrate, and this region contains phosphorylation
sites for both cAMP-dependent protein kinase and casein
kinase II.
Length = 82
Score = 26.6 bits (59), Expect = 6.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+RER+ +K+K R+R K + K ++ R R +K++ + R++ EKK K
Sbjct: 27 RREREEIEKQKARERY-MKLHAQGKTEQARADLARLALIRKQREEAAARREAEKKAK 82
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 27.1 bits (60), Expect = 6.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
R R RKR +K+++R+R R + + +++ + R + R + R
Sbjct: 46 RRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRSRSR 86
Score = 26.7 bits (59), Expect = 7.4
Identities = 9/56 (16%), Positives = 33/56 (58%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ + R+ ++R R+R +R+++ +K+++R++ + + + + + + + R +
Sbjct: 29 AERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRSR 84
>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF. This predicted
GTP-binding protein is found in a single copy in every
complete bacterial genome, and is found in Eukaryotes. A
more distantly related protein, separated from this
model, is found in the archaea. It is known to bind GTP
and double-stranded nucleic acid. It is suggested to
belong to a nucleoprotein complex and act as a
translation factor [Unknown function, General].
Length = 368
Score = 28.6 bits (64), Expect = 6.3
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 274 HHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKE 325
HHV D D ++I + + E KR + KK K +KE+
Sbjct: 114 HHVGNVD---DPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGGKDKKEEL 162
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 28.8 bits (64), Expect = 6.3
Identities = 29/127 (22%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 250 RREKAL-KRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRR 308
R+ L K+ +++ A+ E + + ++RD + K+ + V+ ++E RK R
Sbjct: 354 RKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRRKER 413
Query: 309 KKKKKRKRKR------KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ K++++R R EK +K +K+R +R K++R + +R ++E+ + KK+
Sbjct: 414 RLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKE 473
Query: 363 KKKEKRK 369
+ K +
Sbjct: 474 FEDLKEE 480
>gnl|CDD|222892 PHA02586, 68, prohead core protein; Provisional.
Length = 140
Score = 27.4 bits (61), Expect = 6.3
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 254 ALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEI---LIREKRERKRRKK 310
A R + + A + I L D ++ ++ + + + +++ R +
Sbjct: 22 AQGRVDILSEAFAKDEINGVIENMLDDEPDLALAMLSINENMSLNEAIVKHVSSRGEVTR 81
Query: 311 KKKRK-RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K RK R+R + K KR++ RK + K+ +RK + K+KK KK+K
Sbjct: 82 TKDRKTRERNAYQTTGLSKAKRRQIARKAAKTKRANPSIQRKAQRKRKKALKKRK 136
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 27.5 bits (62), Expect = 6.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
KK KK + + RK KEK++K R + +K K R KK
Sbjct: 50 IKKPKKGHSRGRARKRKEKRRKGRHRGPGSRKGTKGARMPKKE 92
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 27.5 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K+ ++ E+ +K K++ K R K K + R++ KK KK ++ KEK+K
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKK 54
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 27.8 bits (62), Expect = 6.6
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ +K+ +E + ++ +K + K KK +K+ RKK ++ +K++KKK
Sbjct: 93 DQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 28.5 bits (64), Expect = 6.8
Identities = 13/64 (20%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
RE+ R RR+ +++ R+ ++ + +K + + ++++ R++++R R+ +EK++ +
Sbjct: 636 REENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQR----RRNDEKRQAQ 691
Query: 360 KKKK 363
++ K
Sbjct: 692 QEAK 695
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 28.0 bits (63), Expect = 6.8
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ K + K R + + K R+K RK R +KR +
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNR 193
Score = 27.6 bits (62), Expect = 8.6
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
R K + ++ + + K K ++K +K + +++ +RK
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
>gnl|CDD|222959 PHA02999, PHA02999, Hypothetical protein; Provisional.
Length = 382
Score = 28.2 bits (63), Expect = 6.8
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ ++ K KKK + KKK KK R+ + E KK K KK RK
Sbjct: 87 LTKKQISSEENTMKMDKKKYKLKKKIKKVREINDTIRFAHYDYETIKKGYIKFKKMIRKD 146
>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.
Length = 129
Score = 27.5 bits (62), Expect = 6.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKK--------KKRKKKKRKKKRKKKKR 345
I + KR++ + RKKRK E + K R K+ R + +K R
Sbjct: 3 INQGIRSKRKRTGGRLDHHRKKRK-FELGRPPAPTKLGKNRVKQVRVRGGNRKVR 56
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 28.3 bits (63), Expect = 7.0
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 297 ILIREKRERKRRKKK---KKRKRKRKKRKEKEKK-KKKRKKKKRKKKRKKKKRKKKKRKK 352
I KRE K KK+ + ++ RK R+E E++ K +R++ K+ + R ++ RK
Sbjct: 58 IKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKD 117
Query: 353 EEKKKKKKKKKKKEK 367
E K+K + KE+
Sbjct: 118 ENLSSKEKTLESKEQ 132
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 7.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ K + KK K+KR+ +K +K +EE +
Sbjct: 330 KSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELR 365
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels
in the brain in humans. The human protein has six
associated ankyrin repeat domains pfam00023 towards the
C-terminus which act as protein-protein interaction
domains.
Length = 193
Score = 27.9 bits (62), Expect = 7.1
Identities = 18/75 (24%), Positives = 43/75 (57%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++L EKR+RK + ++ KRK + +K +++R++ +K +++K ++ K+E+
Sbjct: 104 QLLAAEKRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQEKSQQAKKEQ 163
Query: 356 KKKKKKKKKKEKRKK 370
+ +K +E+ K
Sbjct: 164 EHRKLLATLEEELGK 178
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative
Tryptophanyl-tRNA synthetase.
Length = 92
Score = 26.5 bits (59), Expect = 7.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+R ++ +K++K +++E KK KKKK
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFTW 71
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 28.6 bits (64), Expect = 7.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R++ + ++ + + + KK K+ KKK +KK+ KK K K
Sbjct: 581 REKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKA 632
>gnl|CDD|224586 COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 359
Score = 28.2 bits (63), Expect = 7.3
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
RE K K++ R K +E + + K K + K K KK+ ++ KK
Sbjct: 274 AARELLSELSKLKKRIGRWWYKLEEIDIVESELKLFKIEVKWKDLKKEAKEVLFLLKKNI 333
Query: 361 KKKKKEKRKKR 371
+ K +
Sbjct: 334 LFLNPIEGKPQ 344
>gnl|CDD|177795 PLN00205, PLN00205, ribisomal protein L13 family protein;
Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 7.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
+RE R R RR + +K+ ++ + +K+K +KK+
Sbjct: 149 VREMRPRARRAMIRAQKKAEQREQAANEKRKGKKKE 184
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.6 bits (59), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRK 346
K ++K+K +KKR+ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 28.4 bits (64), Expect = 7.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
KK +R R ++KR + EK+ + +K KK K +K ++ E +
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLY 331
>gnl|CDD|220183 pfam09331, DUF1985, Domain of unknown function (DUF1985). Members
of this family of functionally uncharacterized domains
are found in a set of Arabidopsis thaliana hypothetical
proteins.
Length = 142
Score = 27.4 bits (61), Expect = 7.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KEK+ KKK KK + +K E+K KKKKKK E R +
Sbjct: 43 KEKKVKKKGTLKKGPFWNKLFGLKKDVTVDDVEEKLKKKKKKDSEDRLR 91
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 28.0 bits (63), Expect = 7.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K++ K + + K + KK+KK EK
Sbjct: 86 RFKERGTGKGRPVPKPKFEFKKEKKVIEKL 115
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 28.6 bits (64), Expect = 7.6
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKE----------------KKKKKRKKKKRKKKR 340
RE RK + + +++ ++R + +K K + +K R K+
Sbjct: 6 REPIGRKGKPSRPVKQKVSRRRYRDDDDYDDYDDYEDEEPMPRKGKGKGRKPRGKRG 62
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 27.1 bits (61), Expect = 7.7
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK KE E KKK + K K+ K+ +K K K K
Sbjct: 73 AKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKSADAMLKALLGSKHKVSMD 122
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional.
Length = 138
Score = 27.4 bits (62), Expect = 7.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
LIRE + ++++ K R K+R+ + KK++ K R K R
Sbjct: 94 LIREALKPPKKRRATKPTRGSKERRLESKKQRGEVKALRGKVR 136
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.0 bits (62), Expect = 8.0
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK-KRKKKRKKKK 344
++ +++R K K RK K+ ++K KE ++K R R R+K+K
Sbjct: 215 DREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEK 259
Score = 27.7 bits (61), Expect = 9.1
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
++K++R++ K KEKK +K+ K+ R+K R + R+KE+
Sbjct: 216 REKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEK 259
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 27.7 bits (62), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRK 346
E KK + K+ RK + KKKK+K
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family of
sequences found in both bacteria and bacteriophages.
This region is approximately 130 residues long and in
some cases is found as part of the PVL (Panton-Valentine
leukocidin) group of genes, which encode a member of the
leukocidin group of bacterial toxins that kill
leukocytes by creation of pores in the cell membrane.
PVL appears to be a virulence factor associated with a
number of human diseases.
Length = 118
Score = 27.1 bits (60), Expect = 8.1
Identities = 10/41 (24%), Positives = 28/41 (68%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K+ R+ KK + +++++E++ ++K++K+ E R+K+
Sbjct: 46 PYGMRLKEYREIKKSENIEQERKERELERKRRKEAELRRKK 86
>gnl|CDD|233221 TIGR00985, 3a0801s04tom, mitochondrial import receptor subunit
translocase of outer membrane 20 kDa subunit.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 148
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+ KRR RK+ R++RK++ +K+ ++K+R+
Sbjct: 28 DYKRRNDPDFRKKLRRRRKKQAGAEKQYGGLAKEKQRQ 65
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 26.4 bits (59), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKK 352
K +++K KKK KK R ++ +KK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKK 91
Score = 26.4 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKK 359
K ++++ KKK KK R +E KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.1 bits (63), Expect = 8.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K KE EK++ +K K K+K K + KKEE+ K K
Sbjct: 200 KIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 28.4 bits (63), Expect = 8.4
Identities = 17/61 (27%), Positives = 18/61 (29%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R K RK K K K KK KK K K +K KKK
Sbjct: 850 RESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKA 909
Query: 367 K 367
Sbjct: 910 A 910
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.7 bits (62), Expect = 8.5
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKR-------------------KEKEKKKKKRKKKK 335
TEIL +K+ R ++K K K+ R +EK + K +
Sbjct: 149 TEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLPKWE 208
Query: 336 RKKKRKKKKRKKKKRKKEEKKKK 358
K K KK ++ K K K
Sbjct: 209 GKTKNKKSLKEYKDLIKLLDSGK 231
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 27.3 bits (61), Expect = 8.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++R +KK+ R+R K K + K+R KR + R++ ++ +++ K K
Sbjct: 64 RKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKH 118
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 28.1 bits (63), Expect = 9.1
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR----KKEEKKKKKKKKKKKE 366
K + KK +E+E+++KK K+ + ++ ++K++ + E +E
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEE 390
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 28.0 bits (62), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ K KRK K+ + KK K +KKR +R+K+
Sbjct: 535 RHNKPPKRKGIKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|214775 smart00689, DM6, Cysteine-rich domain currently specific to
Drosophila.
Length = 157
Score = 27.4 bits (61), Expect = 9.3
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K KR +KE + + ++++RK + + + K
Sbjct: 38 PIMIKPKRICCPDKEPRIPRPRRRRRKPRCPSAACPTGNPMPCKPEAGK 86
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 27.6 bits (62), Expect = 9.3
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKR-KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ +++ K +K KK +K +KR K+ + +K + K K +KKK K +K+
Sbjct: 93 FFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLA 152
Query: 351 KKEEKKKKKKKK 362
K E K ++ K++
Sbjct: 153 KLERKLEEAKEE 164
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 27.3 bits (61), Expect = 9.4
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
EK E +KK + KK K+ E +K+ + + R K +++ ++ K+
Sbjct: 24 EKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARLKVLNAREELLDSVFEEAKE 83
Query: 361 KKKKKEKRKKR 371
+ + K
Sbjct: 84 RLANLSEDKDE 94
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 27.1 bits (60), Expect = 9.5
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 221 WAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRD 280
W I + GY I P K+ Q + E +R E E +++ I LR
Sbjct: 17 WIRIIVIVGGYLLIRPY--FIKLGAKAQEK-EHEKERAEREEAREKKAKISP---NALRG 70
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
D + + + KK RKR+RK ++ + +++ ++ +
Sbjct: 71 GATAGHGEEDTDDEEDEEDFATPSAVPQWGKKARKRQRKVIRKLLEAEEQLREDQ 125
>gnl|CDD|222871 PHA02553, 6, baseplate wedge subunit; Provisional.
Length = 611
Score = 28.1 bits (63), Expect = 9.6
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 100 FKG-GLNV-IDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRR-VVQ 148
F+G LNV IDLLA YI F +N NE +++ T +R VVQ
Sbjct: 34 FEGSRLNVLIDLLAYNTLYIQQF---ANMALNESFLRSAT-----LRSNVVQ 77
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 27.9 bits (63), Expect = 9.6
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 307 RRKKKKKRKRKRKKRKEK-------------EKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
RK+K++ +K+ K EK EK++ ++ K KK + ++ + ++E
Sbjct: 460 SRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEE 519
Query: 354 EKKKKKKKKKKKEK 367
E+ + K +
Sbjct: 520 EEAVVVESAKNYTE 533
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 28.0 bits (63), Expect = 9.6
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 244 IGSNQMRREKALKRREAME--------RAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDT 295
+ ++ RRE+ L+ + + + V L F + + VI ++
Sbjct: 383 LAESEGRRERLLELLAEHDIPPQKVDRLDEAKKGEVYIAVGPLESGFILPDEKLAVITES 442
Query: 296 EILIREKRERKRRKKKKKRKRKRKKR 321
E+L R ++RR++K+++K + +
Sbjct: 443 ELL--GSRVKRRRRRKRRKKNATRIK 466
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 27.4 bits (60), Expect = 9.8
Identities = 15/133 (11%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 186 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIG 245
++ + A + + ++ A T+TTVG ++ P T ++
Sbjct: 89 VIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLL 148
Query: 246 SNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRER 305
+ EA+ + +R ++ +++ + + + E
Sbjct: 149 ARAALVGLGGDSVEAILAL-----------IEIRRDRLADLEELELAGVSPLALSELSLE 197
Query: 306 KRRKKKKKRKRKR 318
R + +R
Sbjct: 198 VREEISLALRRLA 210
>gnl|CDD|165479 PHA03214, PHA03214, nuclear protein UL24; Provisional.
Length = 252
Score = 27.6 bits (61), Expect = 9.9
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R R K K K + + ++ K K + R+ +K K++
Sbjct: 206 RGRYAKAPKSVLTKTSGENRSRASRQVAKNAPKNRIRRTAKKDAKRQ 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.372
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,180,731
Number of extensions: 2007922
Number of successful extensions: 41990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24126
Number of HSP's successfully gapped: 3834
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)