RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6333
(371 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 281 bits (719), Expect = 9e-91
Identities = 122/331 (36%), Positives = 176/331 (53%), Gaps = 57/331 (17%)
Query: 31 QIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPID-------------------NPKL 71
+IIAI+S+M I++S V+ L T+P + +++ +
Sbjct: 182 RIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPF 241
Query: 72 AIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQ 131
IVE +CI WFS E+L+R A P K FF +N+ID++AI+PYY+++FL ESN +
Sbjct: 242 FIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSV--- 298
Query: 132 EVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAM 191
QFQ+VRRVVQ+FRIMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +
Sbjct: 299 ------LQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFI 352
Query: 192 GVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS----- 246
GV++FSS YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS
Sbjct: 353 GVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIA 412
Query: 247 ---------------------NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKS 285
+ E+ + + K S +KS
Sbjct: 413 GVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS-PDLKKSRSASTISKS 471
Query: 286 --MDLIDVIVDTEILIREKRERKRRKKKKKR 314
M++ + + ++ RE+ +
Sbjct: 472 DYMEIQEGVNNSNEDFREENLKTANSTLANT 502
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 259 bits (662), Expect = 3e-84
Identities = 54/298 (18%), Positives = 98/298 (32%), Gaps = 56/298 (18%)
Query: 24 VSLLPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFS 83
+S+LP +I A ++ + +A+ TIP + + + LA + AV +
Sbjct: 1 MSVLPFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLA-------LAALLAVIWGAYL 53
Query: 84 VEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDV 143
++ L + ID+LA++ + L
Sbjct: 54 LQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDG-------------------- 93
Query: 144 RRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFA 203
+ + + +LK R ST LG L N + L + + + + AY
Sbjct: 94 ---SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVI 150
Query: 204 EKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS----------------- 246
E+D KF SIP+ WWA +T++T GYGD P + G+++
Sbjct: 151 ERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGIL 210
Query: 247 ---------NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDT 295
K +++ LR + +I I +
Sbjct: 211 ATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEP 268
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 233 bits (597), Expect = 3e-76
Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 30/222 (13%)
Query: 27 LPLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEY 86
+ ++ + +LS + + + L + +L +V+ + + +Y
Sbjct: 4 VMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYL-------VRLYLVDLILVIILWADY 56
Query: 87 LLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRV 146
R S + + K L ++ A++P + +
Sbjct: 57 AYRAYKSGDPAGYVKKTL--YEIPALVPAGLLAL-------------------IEGHLAG 95
Query: 147 VQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIF--SSLAYFAE 204
+ +FR++R+LR L++ + + ++ ++ LF A+ + + + Y E
Sbjct: 96 LGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVE 155
Query: 205 KDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
+ ++ S+ + WWA +T TTVGYGD+ P TP+GK+IG
Sbjct: 156 YPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGI 197
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 143 bits (363), Expect = 3e-42
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 41/157 (26%)
Query: 90 LGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQV 149
+ S G L+ MP +
Sbjct: 1 MSGSHHHHHHSSGIEGRGRLIKHMP-------------------------------PMLS 29
Query: 150 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHD 209
+ R++++L L RH + L ++ G + L + +L S LA AE+
Sbjct: 30 GLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPG 79
Query: 210 TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
+S P+ WW+ T TTVGYGD+ P T G+ +
Sbjct: 80 AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAV 116
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 139 bits (353), Expect = 5e-41
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 150 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHD 209
+ R++++L L RH + L ++ G + L + +L S LA AE+
Sbjct: 7 GLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPG 56
Query: 210 TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
+ ++ P WWA T TTV YGD+ P T G+++
Sbjct: 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAV 93
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 136 bits (343), Expect = 4e-39
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 139 QFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 198
+ + R++++L L RH + LQ ++ G + L + +L S
Sbjct: 2 HHHHHHPPMLSGLLARLVKLL-LGRHGSALQ---------WRAAGAATVLLVIVLLAGSY 51
Query: 199 LAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 246
LA AE+ + ++ P WW+ T TTVGYGD+ P T G+++
Sbjct: 52 LAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAV 99
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 115 bits (290), Expect = 1e-31
Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 30/166 (18%)
Query: 178 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT 237
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
Query: 238 TPLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEI 297
T G+++ +V + F L+ + T
Sbjct: 64 TLWGRLV-----------------------AVVVMVAGITS---FG----LVTAALATWF 93
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ RE+ R + ++ + + ++ + +R ++
Sbjct: 94 VGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 139
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 109 bits (274), Expect = 7e-30
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 180 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTP 239
+E L + S A AE+ +S P+ WW+ T TTVGYGD P T
Sbjct: 6 REAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTE 65
Query: 240 LGKMIGS 246
G+ +
Sbjct: 66 EGRKVAE 72
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 91.7 bits (227), Expect = 4e-21
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 141 QDVRRVVQV---FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS 197
+ +R V + + +R+ + L + L+ + + L +LFL + F+
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLL-NTAFA 61
Query: 198 SLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249
+L + F+++ T+ TVGYGD+ P T I + ++
Sbjct: 62 TLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEI 113
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 81.5 bits (201), Expect = 4e-19
Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 31/155 (20%)
Query: 28 PLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYL 87
PL ++ +LS + + + L + +L +V+ + + +Y
Sbjct: 6 PLVELGVSY---AALLSVIVVVVEYTMQL-------SGEYLVRLYLVDLILVIILWADYA 55
Query: 88 LRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVV 147
R S + + K + ++ A++P + + +
Sbjct: 56 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLA-------------------LIEGHLAGL 94
Query: 148 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 182
+FR++R+LR L++ + + ++ +L
Sbjct: 95 GLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 82.5 bits (203), Expect = 7e-18
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 3/131 (2%)
Query: 122 LESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILR-ILKLARHSTGLQSLGFTLRNS-- 178
+ + S + RI R ++ ++ + L +
Sbjct: 1 MNVDPFSPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPASVWRDLYYWALKVSW 60
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 238
L + +F+ L + + F+++ T+ TVGYGD+ P T
Sbjct: 61 PVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120
Query: 239 PLGKMIGSNQM 249
I + ++
Sbjct: 121 VYAHAIATLEI 131
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 82.4 bits (203), Expect = 7e-18
Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 21/126 (16%)
Query: 174 TLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGD 233
T+ + L+L +F+ + + S + F+++ TM T+GYG
Sbjct: 43 TVSWPVFITLITGLYLVTN-ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK 101
Query: 234 ICPTTPLGKMIGSNQM--------------------RREKALKRREAMERAKREGSIVSF 273
+ P PL + + + L + +
Sbjct: 102 LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMM 161
Query: 274 HHVNLR 279
NLR
Sbjct: 162 RLANLR 167
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 78.4 bits (193), Expect = 9e-18
Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 31/155 (20%)
Query: 28 PLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYL 87
PL ++ +LS + + + L + +L +V+ + + +Y
Sbjct: 21 PLVELGVSY---AALLSVIVVVVEYTMQL-------SGEYLVRLYLVDLILVIILWADYA 70
Query: 88 LRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVV 147
R S + + K + ++ A++P + + +
Sbjct: 71 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLA-------------------LIEGHLAGL 109
Query: 148 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 182
+FR++R+LR L++ + + ++ +L
Sbjct: 110 GLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 144
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 74.3 bits (183), Expect = 1e-15
Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 47/214 (21%)
Query: 28 PLFQIIAIISIMF-IVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEY 86
+FQ ++ I+L+ V + T + + +++ +F +E
Sbjct: 12 RIFQFT----VVSIIILNAVLIGATTYELDPLFLET--------IHLLDYGITIFFVIEI 59
Query: 87 LLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRV 146
L+R +K FFK G N+ D + + ISL + +NS+
Sbjct: 60 LIRFIGEKQKADFFKSGWNIFDTVIVA---ISLIPIPNNSS------------------- 97
Query: 147 VQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAY--FAE 204
V R++RI R+L+L L+ + + S + + + L L + + I++++ F
Sbjct: 98 FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN 157
Query: 205 KDEHDTKFVSIPETFWWAGIT----MTTVGYGDI 234
D +++ + IT +T + +
Sbjct: 158 DDP--SRW----GDLGISLITLFQVLTLSSWETV 185
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 70.1 bits (172), Expect = 2e-15
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 184 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 243
+L L + V+I+ + + + E S + +W +T+ TVGYGD P TPLG
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDYSPHTPLGMY 57
Query: 244 IGS 246
Sbjct: 58 FTC 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 72.1 bits (177), Expect = 2e-14
Identities = 50/333 (15%), Positives = 105/333 (31%), Gaps = 97/333 (29%)
Query: 28 PLFQIIAIISIMF-IVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEY 86
F I++ IVL+ + + L T + + + IT F++E
Sbjct: 30 SFFTKF----IIYLIVLNGITMGLETSKTF-------MQSFGVYTTLFNQIVITIFTIEI 78
Query: 87 LLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRV 146
+LR+ + FFK ++ D + ISL
Sbjct: 79 ILRIYV--HRISFFKDPWSLFDFFVVA---ISLV---------------------PTSSG 112
Query: 147 VQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAY--FAE 204
++ R++R+LR+ +L ++ + L + + ++ + + IF+ +A F E
Sbjct: 113 FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE 172
Query: 205 KDEHDTKFVSIPETFWWAGIT----MTTVGYGDICPTTPLGKMIGSNQMRREKALKRREA 260
+ F T + T MT +
Sbjct: 173 RFPE--WF----GTLGESFYTLFQVMTLESWSMG-------------------------- 200
Query: 261 MERAKREGS------------IVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRR 308
+ R E +V+F +NL ++ + VD ++ +K E+
Sbjct: 201 IVRPLMEVYPYAWVFFIPFIFVVTFVMINL---------VVAICVDAMAILNQKEEQHII 251
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+ + + K +++ K+ K K
Sbjct: 252 DEVQSHEDNINNEIIKLREEIVELKELIKTSLK 284
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 59.9 bits (145), Expect = 2e-11
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 175 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDI 234
LR + ++ L + LI ++ Y + + + +++ +T+TTVG G+
Sbjct: 16 LRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF 69
Query: 235 CPTTPLGKMI 244
P T GK+
Sbjct: 70 SPQTDFGKIF 79
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 59.1 bits (143), Expect = 2e-11
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 184 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 243
++ L + LI ++ Y + + + +++ +T+TTVGYGD P T GK+
Sbjct: 8 QVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 244 I 244
Sbjct: 62 F 62
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 62.9 bits (153), Expect = 3e-11
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 175 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDI 234
L K +L L + V+I+ + + + E S + +W +T+ TVGYGD
Sbjct: 12 LPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDY 65
Query: 235 CPTTPLGKMIG 245
P+TPLG
Sbjct: 66 SPSTPLGMYFT 76
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 57.3 bits (138), Expect = 3e-10
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 160 KLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETF 219
+ L+ + ++K+ +LF+ + + S +++ + +
Sbjct: 3 SMLSFILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGL-----RPLDAL 57
Query: 220 WWAGITMTTVGYGDICPTTPLGKMI 244
+++ +T+TTVG G+ P T GK+
Sbjct: 58 YFSVVTLTTVGDGNFSPQTDFGKVF 82
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 53.2 bits (127), Expect = 1e-08
Identities = 12/58 (20%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 299 IRE-KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
IR+ + E+++R ++ K +++ +EK KK ++ +++ + +K K R ++
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 50.9 bits (121), Expect = 9e-08
Identities = 13/74 (17%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 300 REKRERKRRKKKKKRKRKRKKR-KEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKEEKKK 357
+ R + + +K + +++KR +E + K +++ R+K +K ++ +++ ++ EK K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 358 KKKKKKKKEKRKKR 371
+ K ++
Sbjct: 136 INNRIADKAFYQQP 149
Score = 42.5 bits (99), Expect = 6e-05
Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 35/108 (32%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
+++ +E R+ E+ KR ++E
Sbjct: 78 DRLTQEPESIRKWREEQRKR--------------------------------LQELDAAS 105
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ +++ R+ K +K+ E+ +++ ++ K K + K ++ +
Sbjct: 106 KVMEQEWRE---KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 3e-08
Identities = 63/379 (16%), Positives = 103/379 (27%), Gaps = 125/379 (32%)
Query: 8 DIRTFAATLSNVSTTSVSLLPLFQIIAIISIMFIVLSTVALTLNTIPS---LQH--KDKA 62
DI AA L + T L + +I + + + + A
Sbjct: 100 DIHALAAKLLQENDT-----TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 63 ---------GNPID------------NPKLAIVEAVCITWFSVEYLLRLGASPEKW-KFF 100
GN D + +V + S E L L + K F
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHV---LVGDLIKF--SAETLSELIRTTLDAEKVF 209
Query: 101 KGGLNVIDLL---AIMP--YY-----ISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVF 150
GLN+++ L + P Y IS L+ V+Q
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----------------------VIQ-- 245
Query: 151 RIMRILRILKLARHSTGLQSLGFT---LRNSYKEL-----GLLM-LFLAMGVLIFSSLAY 201
LA + + LGFT LR+ K GL+ + +A S
Sbjct: 246 ----------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET----DSWES 291
Query: 202 FAEKDEHDTKFVSI------------PETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249
F K +++ P T I ++ + P +P M+ + +
Sbjct: 292 F---FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SP---MLSISNL 344
Query: 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI----VDTEILIREKRER 305
+E+ G V VN V+ L R+
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--------VVSGPPQSLYGLNLTLRKA 396
Query: 306 KRRKKKKKRKRKRKKRKEK 324
K + + +RK K
Sbjct: 397 KAPSGLDQSRIPFSERKLK 415
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 52.2 bits (124), Expect = 1e-07
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
++R+ + K R K + K ++ KK R+KK +K KK +K KK K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Query: 358 KKKKKKKKEKRK 369
K KK ++K
Sbjct: 400 KPAADKKPAEKK 411
Score = 52.2 bits (124), Expect = 1e-07
Identities = 23/90 (25%), Positives = 33/90 (36%)
Query: 279 RDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
K + IL + K + R K + + K KK +RKK K+
Sbjct: 322 LRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTV 381
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK K+ +K KK KK EK+
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 49.9 bits (118), Expect = 7e-07
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ + R R+ + K + + + K ++K KK R+KK KK KK +K
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 356 KKKKKKKKKKEKRKKR 371
KK KK +K
Sbjct: 393 KKAAATKKPAADKKPA 408
Score = 47.9 bits (113), Expect = 2e-06
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K K +++ KK + K+ KK KK +K KK KK ++K +K
Sbjct: 351 MDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Query: 360 KKKKKKEK 367
K +++K
Sbjct: 411 KPTTEEKK 418
Score = 47.6 bits (112), Expect = 4e-06
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R+ K K + + + K +EK +K +++K K+ +K KK +K
Sbjct: 339 TILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAAT 398
Query: 360 KKKKKKEKRKKR 371
KK +K ++
Sbjct: 399 KKPAADKKPAEK 410
Score = 47.2 bits (111), Expect = 4e-06
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + K + K + E+K KK +RKK +K KK K+ KK
Sbjct: 338 NTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAA 397
Query: 360 KKKKKKEKRKKR 371
KK +K+
Sbjct: 398 TKKPAADKKPAE 409
Score = 43.3 bits (101), Expect = 8e-05
Identities = 16/75 (21%), Positives = 31/75 (41%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
I+++ K ++ ++ + + +K + K +K KK ++KK KK
Sbjct: 322 LRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTV 381
Query: 355 KKKKKKKKKKKEKRK 369
KK KK +K
Sbjct: 382 GVKKPKKPVVGKKAA 396
Score = 40.6 bits (94), Expect = 6e-04
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
L + E+ KK +RK+ +K K+ KK KK K+ +K ++K +
Sbjct: 356 AALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTE 415
Query: 356 KKK 358
+KK
Sbjct: 416 EKK 418
Score = 40.6 bits (94), Expect = 6e-04
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 297 ILIREKRERKRRKKKK-------------------KRKRKRKKRKEKEKKKKKRKKKKRK 337
L +++ RR KK +R ++ K + + K
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 360
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K +K KK R+K+ KK KK KK K+
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 36.4 bits (83), Expect = 0.014
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
E + K+ R+++ KK +K KK +K +K KK +KK ++K+
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 6e-07
Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 52/289 (17%)
Query: 43 LSTVALTLNTIPS-LQHKDKAGNPIDNPKLAIVEAVC----ITWFSVEYLLRLGASPEKW 97
S + L+ P L + NP +L+I+ TW + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATW---DNWKHVNCDKLT- 356
Query: 98 KFFKGGLNVIDLLAIMPYYISLFLLESNS------------TSNEQEVQTRTDQFQDVRR 145
+ LNV++ + L + ++ + +V ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YS 415
Query: 146 VVQ------VFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL------GLLMLFLAMGV 193
+V+ I I L+L +L ++ + Y L+ +L
Sbjct: 416 LVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-- 471
Query: 194 LIFSSLAYFAEKDEHDTKFVSIPETFW---WAGITMTTVGYGDICPTTPLGKMIGSNQMR 250
+S + + + EH + F + + + L + Q++
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLK 528
Query: 251 REKALKRREAMERAKREGSIVSF---HHVNLRDAFAKSMDLIDVIVDTE 296
K + + +I+ F NL +K DL+ + + E
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAE 575
Score = 33.7 bits (76), Expect = 0.11
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 42/168 (25%)
Query: 112 IMPYYISLFL--LESNSTSN-EQEVQTRTDQFQDVRRVVQ----VFRIMRILRILKLARH 164
I+ + F+ + + + + ++ +++ ++ V +R+ L +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 165 STGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTK-FVSIPETFWWAG 223
+ + LR +YK FL S + + T+ ++ + +
Sbjct: 77 EMVQKFVEEVLRINYK-------FLM------SPIKTEQRQPSMMTRMYIEQRDRLY--- 120
Query: 224 ITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKREGSIV 271
D N R + LK R+A+ + +++
Sbjct: 121 --------NDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVL 154
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 49.4 bits (118), Expect = 1e-06
Identities = 20/128 (15%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
Q + E+ + +E ++A+ E + H L + + + + L E E +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE---LYAEAEEMRV 916
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK----KKRKKEEKKKKKKKKK 363
R KK++ + + + + +++ ++ ++ + KKK +++ +++ +EE+ ++K +
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 364 KKEKRKKR 371
+K +
Sbjct: 977 EKVTADGK 984
Score = 47.5 bits (113), Expect = 6e-06
Identities = 14/128 (10%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 250 RREKALKRREAMERAKREGSIVSF--HHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
R + M ++ ++ + + E ++E ++
Sbjct: 829 RSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHT 888
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKK----KRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ ++K + K + E E + + + +K++ ++ + + R +EE+++ ++ +
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 364 KKEKRKKR 371
+K+K +++
Sbjct: 949 EKKKMQQQ 956
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/124 (13%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
+ R++KA + +E+ + ++ A++ + L +K+E +
Sbjct: 870 KERQQKAEAELKELEQKHT--QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927
Query: 308 RKKKKKRKRK---RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ + + + + ++ + +KKK +++ +++ +++ +++ + EK K KK
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 365 KEKR 368
E
Sbjct: 988 MEDD 991
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/131 (12%), Positives = 50/131 (38%), Gaps = 1/131 (0%)
Query: 242 KMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIRE 301
+ + +E K + E + +A + L + E ++ E
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931
Query: 302 KRERKRRKKKKKRK-RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R ++++ ++ + KK+ +++ + + ++ + R+K + +K + KK +
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 361 KKKKKEKRKKR 371
+++ K
Sbjct: 992 ILIMEDQNNKL 1002
Score = 36.7 bits (85), Expect = 0.011
Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
Q + ++ E+ + E + + AK +L +++ + E I E+ ER +
Sbjct: 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944
Query: 308 RKKKKKRK---------------RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ + +K+K +++ + EK K KK + + + K K
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 353 EEKKKKKKKKKKKEK 367
E K +++
Sbjct: 1005 ERKLLEERVSDLTTN 1019
Score = 36.7 bits (85), Expect = 0.014
Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 240 LGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILI 299
+ I + + K K R+ +E + + NL + K+ +L +
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTT------NLAEEEEKAKNLTK--------L 1033
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K E + + + K++ K R+E EK K+K + + + + + + + + + KK
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 360 KKKKKKEKRK 369
+++ + +
Sbjct: 1094 EEELQAALAR 1103
Score = 35.2 bits (81), Expect = 0.037
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEK--EKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ILI E + K K++K + + E+++K + K K K + + + R K+
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 354 EKKKKKKKKKKKEKRKK 370
E+K +++ +K K K +
Sbjct: 1051 EEKSRQELEKIKRKLEG 1067
Score = 31.3 bits (71), Expect = 0.53
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++E E ++ + K K+KR +E E K + + +++ R + ++K
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 31.3 bits (71), Expect = 0.59
Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHH--VNLRDAFAKSM----DLIDVIVDTEILIR 300
Q+ E+A +++ +E+ +G I + + D K L + + D +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ E+ + K K K + E E + KK +K +++ ++ K+K + + E+ + +
Sbjct: 1022 EEEEKAKNLTKLKNKHESMI-SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 361 KKKKKEKRKKR 371
+ + K +
Sbjct: 1081 AQIAELKAQLA 1091
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 46.8 bits (110), Expect = 2e-06
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 299 IREKRE-RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
IR+ RE +++R ++ K +++ +EK KK ++ +++ + +K K R ++
Sbjct: 102 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Score = 43.8 bits (102), Expect = 2e-05
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R + + +K + +++KR ++ K +++ ++K KK + +R+ E+ +K K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 361 KKKKKEK 367
+ +K
Sbjct: 152 NNRIADK 158
Score = 41.4 bits (96), Expect = 2e-04
Identities = 12/67 (17%), Positives = 34/67 (50%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+R ++ + RK + ++RK ++ K +++ + K KK ++ +++ ++ +K K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 364 KKEKRKK 370
+ K
Sbjct: 153 NRIADKA 159
Score = 38.0 bits (87), Expect = 0.002
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
RK R+E+ +KR ++ + ++ ++K KK+ ++ +++ ++ EK K
Sbjct: 103 RKWREEQ----RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 47.5 bits (112), Expect = 3e-06
Identities = 12/60 (20%), Positives = 31/60 (51%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ R + + R R+K++ ++ K +K K ++KK+K+ + K +++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 46.7 bits (110), Expect = 4e-06
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + + + + ++KK+ K+ K K+ K + KKK++ K K KR++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 46.3 bits (109), Expect = 6e-06
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ + + R R ++K++ K+ + KK + +++KKK+ K K K ++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 46.3 bits (109), Expect = 6e-06
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + + + R ++KK+ K+ K KK K +EKKKK+ K K KR++
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 46.0 bits (108), Expect = 8e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ + R +++K+ K+ + +K K + KKKK+ K K KR++ K E +
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 46.0 bits (108), Expect = 8e-06
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
I + + + + ++K++ K+ K KK + ++K+KK+ K K K++R
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 46.0 bits (108), Expect = 8e-06
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + + R+KK+ K+ K K+ K ++KKKK+ K K +++R
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 45.2 bits (106), Expect = 1e-05
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ R + + + ++KK+ K+ K +K K ++K++K+ K K K+++
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 45.2 bits (106), Expect = 1e-05
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ + + + + ++K++ K+ K KK K ++KK+K+ K K K+++ K +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 45.2 bits (106), Expect = 1e-05
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ + R + ++K++ K+ K KK K ++KKK++ + K ++++ K E +
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 43.3 bits (101), Expect = 6e-05
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + + + R+KK+ K+ K K+ K + KK+++ K K K++ K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 42.9 bits (100), Expect = 7e-05
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + + + + ++KK+ K+ K K+ K + KKKK+ + K K+++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 42.9 bits (100), Expect = 8e-05
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ + + R + ++KK+ ++ K KK + ++K+KK+ K + K+++ K + R
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 42.1 bits (98), Expect = 1e-04
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ R + + R +KK+ K+ + KK K +++KKK+ K + K+++ K E +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 39.8 bits (92), Expect = 8e-04
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKE--------KKKKKRKKKKRKKKRKKKKRKKKKRK 351
R R+RR+ R + ++ + + + + + +++K+ ++
Sbjct: 19 AMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQ 78
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
+ KK K ++KKK++ K
Sbjct: 79 PPKPKKPKPQEKKKKQPAKT 98
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ R+KK+ K+ K +K K ++KKK++ K K ++++ K + +
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 29.0 bits (64), Expect = 2.1
Identities = 7/77 (9%), Positives = 25/77 (32%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+L R + +R+R+ + + ++ + + +
Sbjct: 6 FNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRP 65
Query: 355 KKKKKKKKKKKEKRKKR 371
+ ++KK+ ++ K
Sbjct: 66 RPPPRQKKQAPKQPPKP 82
Score = 28.6 bits (63), Expect = 2.9
Identities = 10/68 (14%), Positives = 25/68 (36%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
R +++++ R + ++ + R + R + ++KK+ K
Sbjct: 18 TAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPK 77
Query: 364 KKEKRKKR 371
+ K KK
Sbjct: 78 QPPKPKKP 85
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 45.5 bits (107), Expect = 4e-06
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
++ + I ++ KK + ++ ++ K+K+ ++K+ RK + K K KK
Sbjct: 83 AIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKA 142
Query: 350 RKKEEKKKKKKKKKKK 365
K+ K+ K KK
Sbjct: 143 ETKKTKQPVGAKGGKK 158
Score = 43.6 bits (102), Expect = 2e-05
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
R++ +K + +K + K+KK +K++ RK + + K KK E KK K+
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVG 152
Query: 364 KKEKRK 369
K +K
Sbjct: 153 AKGGKK 158
Score = 40.5 bits (94), Expect = 2e-04
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R + KK + ++ R+ K+KK +KK+ +K + K K K+ + +K K+
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVG 152
Query: 362 KKKKEK 367
K +K
Sbjct: 153 AKGGKK 158
Score = 40.5 bits (94), Expect = 2e-04
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R+K K+ + ++ ++ K++K +KKR +K + K K +K + KK K+
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVG 152
Query: 367 KRKKR 371
+ +
Sbjct: 153 AKGGK 157
Score = 37.1 bits (85), Expect = 0.003
Identities = 13/68 (19%), Positives = 33/68 (48%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++K+++ + E+ ++K +K + +K R+ K++K + +KK+ +K
Sbjct: 71 QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Query: 364 KKEKRKKR 371
+ K K
Sbjct: 131 LQGKDVKA 138
Score = 35.9 bits (82), Expect = 0.007
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ + +KK+KR + + +++ KK + +K +E K+KK
Sbjct: 62 KKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKAND 121
Query: 362 KKKKEKRKK 370
+KK +K
Sbjct: 122 IEKKRADRK 130
Score = 35.5 bits (81), Expect = 0.009
Identities = 14/73 (19%), Positives = 31/73 (42%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K++K+ R +E ++K KK +K ++ K+KK +K
Sbjct: 65 KATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEK 124
Query: 359 KKKKKKKEKRKKR 371
K+ +K + + +
Sbjct: 125 KRADRKLQGKDVK 137
Score = 33.6 bits (76), Expect = 0.046
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
R + +RK KK + K + K++K +KK+ ++ + K K
Sbjct: 79 TVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKA 138
Query: 362 KKKKEKRKK 370
KK E +K
Sbjct: 139 AKKAETKKT 147
Score = 32.8 bits (74), Expect = 0.082
Identities = 14/72 (19%), Positives = 30/72 (41%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K +KKKK+ + ++ R+K +K + K + K++K
Sbjct: 63 KVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDI 122
Query: 360 KKKKKKEKRKKR 371
+KK+ K + +
Sbjct: 123 EKKRADRKLQGK 134
Score = 27.4 bits (60), Expect = 5.6
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R+ KK K +KK+K + ++ ++K +K E +K ++ K+K
Sbjct: 58 RRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQK 117
Query: 365 KEKRKKR 371
K ++
Sbjct: 118 KANDIEK 124
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 44.3 bits (104), Expect = 9e-06
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I++KR K + R+ ++ KE+ KK K KK K+ + K +K + K + K
Sbjct: 93 IQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
Query: 359 KKKKKKKEKR 368
K KR
Sbjct: 153 PKIGGGGGKR 162
Score = 42.4 bits (99), Expect = 5e-05
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+++R + + + R+ R+ KE+ KK + +KK KK K +K + + ++ K
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
Query: 362 KKKKEKRKK 370
K K+
Sbjct: 154 KIGGGGGKR 162
Score = 42.4 bits (99), Expect = 5e-05
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++KR +K + R R+ + K++ K+ K ++K K+ + + +K + K ++ K
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
Query: 364 KKEKRKKR 371
K +
Sbjct: 154 KIGGGGGK 161
Score = 38.9 bits (90), Expect = 8e-04
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
I + + + R ++ + K + K+ K +K+ KK K +K + K ++ K
Sbjct: 92 VIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Query: 356 KKKKKKKKKK 365
K K
Sbjct: 152 GPKIGGGGGK 161
Score = 36.6 bits (84), Expect = 0.004
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
++VI E R+ R ++ K + KK K+++K KK K +K + K ++
Sbjct: 90 LEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Query: 349 KRKKEEKKKKKKK 361
+ + K+
Sbjct: 150 AKGPKIGGGGGKR 162
Score = 33.9 bits (77), Expect = 0.042
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+KRR+ KK + E +KKR +K + ++ ++ +++ +K K +KK KK
Sbjct: 71 KKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKK 130
Query: 365 KEKRKKR 371
E K +
Sbjct: 131 AEVAKSQ 137
Score = 32.3 bits (73), Expect = 0.13
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK----KKRKKKKRKKKKRKKEEKK 356
E +++RR KK R + +KK+ +K + + + ++ +++ K+ K+EKK
Sbjct: 68 EAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKK 127
Query: 357 KKKKKKKKKEKRKKR 371
KK + K +K + +
Sbjct: 128 AKKAEVAKSQKTQSK 142
Score = 31.2 bits (70), Expect = 0.33
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR----------KKKKR 345
+ + + + +++ KK E KK+R+ K+ R +KK+
Sbjct: 39 KRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRS 98
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K + + ++ ++ K++ K+ K
Sbjct: 99 EKPEVRDAAREAALREIKERIKKTKD 124
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 44.3 bits (104), Expect = 1e-05
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R ++ + +K +R++ R KE KK K+ KK K K ++K K K
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Query: 362 KKKKEKR 368
+ KR
Sbjct: 151 PRVGGKR 157
Score = 32.7 bits (74), Expect = 0.075
Identities = 12/75 (16%), Positives = 31/75 (41%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+++R RR K +R + K+ ++ + ++ ++ + + K+ +K ++
Sbjct: 62 GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQA 121
Query: 356 KKKKKKKKKKEKRKK 370
KK K K
Sbjct: 122 SKKTAMAAAKAPTKA 136
Score = 30.0 bits (67), Expect = 0.79
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR-------------KKKRKK 342
E KR ++ +RK KK + +E +KK+ ++ + KR +
Sbjct: 37 ESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQ 96
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K +K ++++ + K+ KK K+ KK
Sbjct: 97 KPEVRKAQREQAIRAAKEAKKAKQASKK 124
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 44.3 bits (104), Expect = 2e-05
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+K D+ D ++ E+ EK K K ++ +R +RK ++ K R + +++
Sbjct: 145 FGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREA 204
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + KR E K +K + +K++ K
Sbjct: 205 AAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235
Score = 39.3 bits (91), Expect = 0.001
Identities = 13/70 (18%), Positives = 32/70 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ RR+ K K K K + +R ++KR ++ K + + +R+ + +
Sbjct: 154 RDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLA 213
Query: 362 KKKKEKRKKR 371
K+ E++ ++
Sbjct: 214 KRLSERKAEK 223
Score = 34.7 bits (79), Expect = 0.034
Identities = 11/71 (15%), Positives = 29/71 (40%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R RK K+ + + + K +K K K +R ++ ++++ + K +
Sbjct: 137 RANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVR 196
Query: 360 KKKKKKEKRKK 370
+ ++E +
Sbjct: 197 NAQAQREAAAE 207
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 45.2 bits (106), Expect = 2e-05
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K + KK K K++ + +K K K+ + K + K +++
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Query: 366 EKRK 369
+ ++
Sbjct: 401 QGQE 404
Score = 44.8 bits (105), Expect = 3e-05
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 287 DLIDVIVDTEI--LIREKRERKRRKKKK------------------KRKRKRKKRKEKEK 326
D+ +I E+ +++ + ++KK +++ +K + +
Sbjct: 294 DIARIINSNEVQSVVKVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKA 353
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K++ K RK + KK + K ++ K +++
Sbjct: 354 KRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Score = 44.4 bits (104), Expect = 4e-05
Identities = 10/65 (15%), Positives = 26/65 (40%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + KK + + KR+ K +K K +K + K ++ K +++
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Query: 366 EKRKK 370
+ ++
Sbjct: 400 AQGQE 404
Score = 43.3 bits (101), Expect = 9e-05
Identities = 9/66 (13%), Positives = 27/66 (40%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ ++ K K++ + RK + KK + + ++ K R+++ +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Query: 360 KKKKKK 365
++ K+
Sbjct: 402 GQEIKE 407
Score = 42.5 bits (99), Expect = 1e-04
Identities = 10/68 (14%), Positives = 30/68 (44%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K+ + K K++ K ++ K KK + K ++ K +++ + +
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQG 402
Query: 360 KKKKKKEK 367
++ K+ ++
Sbjct: 403 QEIKEGDE 410
Score = 42.1 bits (98), Expect = 2e-04
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+++ KK K +++ K ++ K KK + K +E K +++
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Query: 368 RKKR 371
+ +
Sbjct: 401 QGQE 404
Score = 42.1 bits (98), Expect = 2e-04
Identities = 9/66 (13%), Positives = 27/66 (40%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ +K + K KR+ + +K K KK + + ++ + +++ +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Query: 365 KEKRKK 370
++ K+
Sbjct: 402 GQEIKE 407
Score = 41.7 bits (97), Expect = 3e-04
Identities = 9/68 (13%), Positives = 27/68 (39%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+E+ ++ + + +++ K K K KK + K ++ K ++
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Query: 362 KKKKEKRK 369
+ +E ++
Sbjct: 400 AQGQEIKE 407
Score = 29.4 bits (65), Expect = 2.2
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
++ R+ + KK + K E+ K +++ + ++ K+
Sbjct: 359 LKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKE 407
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 44.4 bits (104), Expect = 2e-05
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK K ++K ++ ++ RK ++K+ +R +K+ E ++ + K++ +
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Score = 42.9 bits (100), Expect = 7e-05
Identities = 8/60 (13%), Positives = 24/60 (40%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+ K ++K + + K K K+ ++ +++ + ++ + K+ K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Score = 41.0 bits (95), Expect = 3e-04
Identities = 12/65 (18%), Positives = 26/65 (40%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E + +K K ++K + E+ +K K+K+ + +K+ E + K+
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Query: 364 KKEKR 368
K
Sbjct: 70 KAAGS 74
Score = 40.2 bits (93), Expect = 6e-04
Identities = 9/73 (12%), Positives = 31/73 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E +++ + +++ ++ +R +K KEK+ ++ +K + + + K +
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Query: 356 KKKKKKKKKKEKR 368
K + + +
Sbjct: 70 KAAGSYYVEAQHK 82
Score = 35.9 bits (82), Expect = 0.011
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + KK K +++ ++ +R +K +EK+ ++ +++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYE 56
Score = 32.5 bits (73), Expect = 0.16
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ + ER RK K KR + +K+ + +R + K+ K
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIIL-ERNAAYQKEYETAERNIIQAKRDAKAAGSYYV 77
Query: 354 EKKKK 358
E + K
Sbjct: 78 EAQHK 82
Score = 31.3 bits (70), Expect = 0.35
Identities = 7/49 (14%), Positives = 23/49 (46%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + KK K ++K ++ ++ +K K++ ++ +++ +
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETA 58
Score = 30.6 bits (68), Expect = 0.79
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K + + +K K ++K ++ ++ +K K+K+ +
Sbjct: 3 AEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILER 47
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 43.3 bits (101), Expect = 3e-05
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 307 RRKKKKKRK----RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
R +++ + ++ K+R+ E + RK+K R+ ++ ++R+ + R + K+
Sbjct: 112 NRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Query: 363 KKKE 366
K++
Sbjct: 172 KQEA 175
Score = 39.1 bits (90), Expect = 0.001
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
++RR + + +++K +E K+ ++R+ + R + K+ K++ ++
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD 177
Score = 38.3 bits (88), Expect = 0.002
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V +I+E + R R + + RKRK R+ ++ +++R + + + K+ K+
Sbjct: 118 VMRAGVIQECKRR-RFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
Query: 353 EE 354
++
Sbjct: 177 DD 178
Score = 37.9 bits (87), Expect = 0.002
Identities = 8/62 (12%), Positives = 28/62 (45%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R +++ R ++ K + + + +KRK + K+ ++++ + + K+
Sbjct: 112 NRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Query: 366 EK 367
++
Sbjct: 172 KQ 173
Score = 36.8 bits (84), Expect = 0.005
Identities = 11/79 (13%), Positives = 39/79 (49%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ ++++ + +R + +R+ R ++ K+++ + + +KRK ++ K+ R++
Sbjct: 95 YNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 154
Query: 353 EEKKKKKKKKKKKEKRKKR 371
+ + + K+ K+
Sbjct: 155 RPQARFTPQNKQDVPATKQ 173
Score = 36.4 bits (83), Expect = 0.007
Identities = 12/63 (19%), Positives = 34/63 (53%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R +RE R ++ KR+R ++ +K+K ++ ++ +R++ + + + K++ K
Sbjct: 113 RFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATK 172
Query: 360 KKK 362
++
Sbjct: 173 QEA 175
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 44.4 bits (104), Expect = 3e-05
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+L D + L KK + +++ K K K KK K
Sbjct: 242 PKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Query: 345 RKKKKRKKEEKKKKK------KKKKKKEKR 368
+K K +K K K KK +
Sbjct: 302 AAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 44.0 bits (103), Expect = 4e-05
Identities = 18/95 (18%), Positives = 30/95 (31%)
Query: 270 IVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK 329
I + L D +K + L + +K + + K + K+ + KK
Sbjct: 237 ISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKK 296
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K +K K + K K KK K
Sbjct: 297 NSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 41.7 bits (97), Expect = 2e-04
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK------- 361
+K K E + K+ K K + KK K ++ K K
Sbjct: 261 SLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDA 320
Query: 362 --KKKKEKRKK 370
K +K K
Sbjct: 321 FFGAKNKKTGK 331
Score = 39.0 bits (90), Expect = 0.002
Identities = 15/85 (17%), Positives = 27/85 (31%)
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ LI + E+ + K + K+ + + + K+ K K K
Sbjct: 233 AHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLK 292
Query: 345 RKKKKRKKEEKKKKKKKKKKKEKRK 369
KK K +K K K +
Sbjct: 293 TGKKNSKMTAAQKALAKVDKSGMKS 317
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 43.6 bits (102), Expect = 4e-05
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK R K RK K +++K + +++K + + +K + E +KK +K++ RK
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Score = 41.3 bits (96), Expect = 2e-04
Identities = 10/66 (15%), Positives = 32/66 (48%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+ + +K ++ + ++++ + K++K + K +K + + +K+ +K+K +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 366 EKRKKR 371
Sbjct: 71 AFYVPA 76
Score = 41.3 bits (96), Expect = 2e-04
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ E ++K + +K RK K ++RK + K+RK + K +K + KK
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61
Query: 356 KKKKKKKKKKEKRKKR 371
+K+K +K
Sbjct: 62 EKRKARKTGAFYVPAE 77
Score = 40.1 bits (93), Expect = 5e-04
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E + ++ ++ +K K +RK + K++K + K ++ + KK +K +
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 356 KKKKKKKKKKEKR 368
+K E +
Sbjct: 67 RKTGAFYVPAEAK 79
Score = 32.8 bits (74), Expect = 0.14
Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
D ++ + +RK + K+++ + + +K + + ++K +K+K +K
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKA-EWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYV 74
Query: 354 EKKKK 358
+ K
Sbjct: 75 PAEAK 79
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 44.1 bits (103), Expect = 4e-05
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKK---KRKKKKRKKKRKKKKRKKKKRKKEEKK 356
E+ RK+ K +K +R K KE+ +K + KK++ K + KK E
Sbjct: 185 PERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAP 244
Query: 357 KKKKKKKKKEKRK 369
KK K K
Sbjct: 245 KKVDPKAAKTTPA 257
Score = 41.0 bits (95), Expect = 3e-04
Identities = 12/71 (16%), Positives = 21/71 (29%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+++R K KK + +K K K + K K + K
Sbjct: 220 KKQRAAKAHAASAPVVEAPKKVEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAKTTT 279
Query: 360 KKKKKKEKRKK 370
K+ +K
Sbjct: 280 PAPAVKDAKKT 290
Score = 37.1 bits (85), Expect = 0.007
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K K K ++ +R RK+ K +K ++ K +++ ++ + KK+ K
Sbjct: 171 KDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAA 230
Query: 362 KKKKEKRKKR 371
+ K+
Sbjct: 231 SAPVVEAPKK 240
Score = 32.1 bits (72), Expect = 0.26
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 21/103 (20%)
Query: 290 DVIVDTEILIREKRERKRRKKKKK----------RKRKRKKRKEKEKKKKKRKKKK---- 335
D I+ + +IR + + K + K + RKK + EK ++ K
Sbjct: 152 DPILIKKSVIRRTFKTAKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEE 211
Query: 336 -------RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK+R K E KK + KK K K
Sbjct: 212 YEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKVDPKAAKT 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 44.0 bits (103), Expect = 7e-05
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K + KK K+++ ++ KKK+ ++K K+++ KK K+ ++ ++ K K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSS 874
Score = 42.5 bits (99), Expect = 2e-04
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K + KK KK K ++K+K+ + K+K+R+ +K K+ K+ +E K +
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNK 871
Score = 42.1 bits (98), Expect = 3e-04
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ + R +K +KEK ++++KK+ +K+++++ KK ++ +E ++ K K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKY 872
Score = 39.4 bits (91), Expect = 0.002
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V T +L R K R KK K++K +E+KKK+ ++K+++++ KK K+ K
Sbjct: 810 VATAVLSTTAR-AKARAKKT----KKEKGPNEEEKKKEHEEKEKERETNKKGIKETKEND 864
Query: 353 EEKKKKKKKKK 363
EE K K K
Sbjct: 865 EEFYKNKYSSK 875
Score = 36.7 bits (84), Expect = 0.013
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ KE EK + K + KK KK+K EE+KKK+ ++K+KE+
Sbjct: 800 EEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETN 853
Score = 36.3 bits (83), Expect = 0.016
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + K EK + K + KK K++K ++E+KK+ ++K+K++E KK
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.9 bits (104), Expect = 7e-05
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
Q L R + + SI+ HV A + IV + R ++
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905
Query: 308 RKK--------------------KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
KK K + +++ + KE K K + + K
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 348 KKRKKEEKKKKKKKKKKKEKRKK 370
+ + + +++ K +
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLS 988
Score = 43.6 bits (103), Expect = 8e-05
Identities = 17/122 (13%), Positives = 39/122 (31%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
Q L R K + + + K + + V+ + E K
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ ++K + K+ K +K + + K + ++ R EE+ K + +
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 368 RK 369
+
Sbjct: 991 EE 992
Score = 40.9 bits (96), Expect = 7e-04
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 7/133 (5%)
Query: 245 GSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRE 304
+R + ++ +A G +V + + + + + + R
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSII-IQKHVRGWLARVHYHRT 886
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKK------KRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K + R+ ++E +K K + KK + K + ++K ++ ++ K
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 359 KKKKKKKEKRKKR 371
+K +
Sbjct: 947 LLEKMNNLEITYS 959
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 43.9 bits (104), Expect = 8e-05
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 1/122 (0%)
Query: 250 RREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRK 309
RE+ L E + + + +N + A +S D D I + + +E K+ +
Sbjct: 757 AREQRL-GSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE 815
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K + + + K + KR+ + +K +++ E +
Sbjct: 816 KPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALR 875
Query: 370 KR 371
Sbjct: 876 IE 877
Score = 42.0 bits (99), Expect = 3e-04
Identities = 10/119 (8%), Positives = 31/119 (26%), Gaps = 6/119 (5%)
Query: 248 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKR 307
+ E + + G ++ L++ A + + + +
Sbjct: 895 LKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC------QSLEGQSNSDLLS 948
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ + E+K ++ K + K + E+ +K +
Sbjct: 949 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 43.0 bits (101), Expect = 1e-04
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
E ++KR +K++ K +++ KE + ++ + + K+R + +
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDG 90
Query: 355 KKKKKKKKKKKEKRKKR 371
KKKK+K+KKR
Sbjct: 91 DGDGATGKKKKKKKKKR 107
Score = 40.7 bits (95), Expect = 7e-04
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK------KRKKKKRKKKKRKKEE 354
E ++KRRKKKK + +E +K+ + ++ + K++ + +
Sbjct: 33 EAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDG 92
Query: 355 KKKKKKKKKKKEKRKK 370
KKKKKK+K++
Sbjct: 93 DGATGKKKKKKKKKRG 108
Score = 34.9 bits (80), Expect = 0.044
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+E + R+ +R ++KE+ + KK+KKKK+K+ K
Sbjct: 57 DKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.2 bits (73), Expect = 0.28
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
E + + ++ + E +++ + + K+KKKK+KK K
Sbjct: 55 EPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.8 bits (72), Expect = 0.32
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+E ++ +KK+RKKKK K E++ K+ E
Sbjct: 9 ASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVA 68
Query: 369 KK 370
++
Sbjct: 69 RQ 70
Score = 31.8 bits (72), Expect = 0.39
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
++E+ ++ KKKR+KKK+ K E++ K+ ++
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
Query: 369 KK 370
+
Sbjct: 68 AR 69
Score = 31.0 bits (70), Expect = 0.56
Identities = 9/70 (12%), Positives = 26/70 (37%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++ ++ KKK+RKKK+ K +++ +++
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 361 KKKKKEKRKK 370
+ ++ +
Sbjct: 65 DEVARQLERS 74
Score = 31.0 bits (70), Expect = 0.63
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
R+ ++ +++ ++ E KKK+KKKK++ K + +
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 30.7 bits (69), Expect = 0.89
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E R+E + KK+++K+KK K ++E K+
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 364 KKEKRKKR 371
+ ++ +R
Sbjct: 66 EVARQLER 73
Score = 29.9 bits (67), Expect = 1.5
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ E R++ ++ +KK+++KKK K ++ +E
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 359 KKKKKKKEKRK 369
+ ++ +R
Sbjct: 64 VDEVARQLERS 74
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 42.1 bits (98), Expect = 1e-04
Identities = 10/65 (15%), Positives = 29/65 (44%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+R++++ ++K++ EK K K + ++ + + + KE + K++ + K
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKG 75
Query: 366 EKRKK 370
Sbjct: 76 GFYVS 80
Score = 41.4 bits (96), Expect = 2e-04
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KR+R+ EK++K K K + + R ++ + E + K+ + K+E R K
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMK 74
Query: 371 R 371
Sbjct: 75 G 75
Score = 39.8 bits (92), Expect = 7e-04
Identities = 8/63 (12%), Positives = 30/63 (47%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+++ + ++K+K +K + + K + ++ + + ++K+ + K++ + K
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKG 75
Query: 369 KKR 371
Sbjct: 76 GFY 78
Score = 39.8 bits (92), Expect = 7e-04
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E +I ++R + +KK+K +K K E K + ++ + + K+ + K E
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Query: 356 KKKKKKKKKKEKR 368
+ K E +
Sbjct: 72 RMKGGFYVSPEAK 84
Score = 39.4 bits (91), Expect = 8e-04
Identities = 6/68 (8%), Positives = 31/68 (45%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+ K++++ +K+++ +K K + + + ++ + ++++ + K++
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Query: 364 KKEKRKKR 371
+ +
Sbjct: 72 RMKGGFYV 79
Score = 38.7 bits (89), Expect = 0.002
Identities = 10/67 (14%), Positives = 31/67 (46%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++RR++ ++K+K EK K + K + ++ + + + ++ + K++ + K
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGG 76
Query: 365 KEKRKKR 371
+
Sbjct: 77 FYVSPEA 83
Score = 34.0 bits (77), Expect = 0.047
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E K K ++++ + +KK++ EK K + K R ++
Sbjct: 4 EAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 33.3 bits (75), Expect = 0.088
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ K +K K++R++ +KK+K +K K + K +
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 33.3 bits (75), Expect = 0.10
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K +K KR++++ ++K++ +K K + + R
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 31.7 bits (71), Expect = 0.33
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRK-KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ +K++ K K K R E+ + + + K+ + +++ + K
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVS 80
Query: 353 EEKK 356
E K
Sbjct: 81 PEAK 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 41.7 bits (97), Expect = 3e-04
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK-KRKKKKRKKKRKKKKRKKKKRK 351
+T + EK K + KK E K+ + + + +K + KK K
Sbjct: 285 GNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAK 344
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
E+ ++ EK +
Sbjct: 345 IEDTSNVGTEQLVAEKIPEN 364
Score = 35.5 bits (81), Expect = 0.026
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+R + +K + K + K++ + K+ R++ + K+ + K
Sbjct: 282 ARRGNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESK 341
Query: 361 KKKKKEKRKKR 371
K K ++
Sbjct: 342 KAKIEDTSNVG 352
Score = 29.0 bits (64), Expect = 2.9
Identities = 4/55 (7%), Positives = 13/55 (23%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ + + K + KK K ++ ++ +
Sbjct: 316 NGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHH 370
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 41.0 bits (95), Expect = 3e-04
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+R+ + K KR ++K K +K ++K +K K ++ ++ + E + + +K
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 101
Query: 366 EKRKKR 371
Sbjct: 102 NFYVPA 107
Score = 40.6 bits (94), Expect = 4e-04
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ ++K + +KKR+ + K KR +KK K +K R+K +K + K+
Sbjct: 24 AGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEY 83
Query: 361 KKKKKEKRKKR 371
++ + + +
Sbjct: 84 RQMYRTEIRMA 94
Score = 40.6 bits (94), Expect = 5e-04
Identities = 11/61 (18%), Positives = 30/61 (49%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KKKR+ + + ++ +KK K ++ +++ ++ K K+ + + + + + RK
Sbjct: 41 KKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 100
Query: 371 R 371
Sbjct: 101 G 101
Score = 39.1 bits (90), Expect = 0.001
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++++K K+K + KKK + KKKR+ K KR +++ K +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 362 KKKKEKRKKR 371
K +++ ++
Sbjct: 66 KARRKLIYEK 75
Score = 38.7 bits (89), Expect = 0.002
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E ++K++ + K K+ ++K K RK +++ K K K+ R+ + + +
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMA 97
Query: 364 KKEK 367
+K
Sbjct: 98 RKAG 101
Score = 38.3 bits (88), Expect = 0.002
Identities = 9/70 (12%), Positives = 32/70 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++R+ + K ++ ++K + +K +++ ++ K K+ R+ + + + +K
Sbjct: 41 KKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 100
Query: 362 KKKKEKRKKR 371
+ +
Sbjct: 101 GNFYVPAEPK 110
Score = 37.9 bits (87), Expect = 0.003
Identities = 12/70 (17%), Positives = 31/70 (44%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E ++KRR + + ++ +K+ + +K R+K +K + K ++ + E + +
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMA 97
Query: 361 KKKKKEKRKK 370
+K
Sbjct: 98 RKAGNFYVPA 107
Score = 37.9 bits (87), Expect = 0.003
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E L +++R K K+ RK+ K K ++K +K K K ++ + + R
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMA 97
Query: 356 KKKKKKKKKKEKR 368
+K E +
Sbjct: 98 RKAGNFYVPAEPK 110
Score = 36.8 bits (84), Expect = 0.007
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K++ + K+K E KKKR+ K ++ +K+ K ++ ++K +K
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKA 76
Query: 364 KKEKRKKR 371
K ++ R
Sbjct: 77 KHYHKEYR 84
Score = 36.4 bits (83), Expect = 0.009
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++K K K+K E KKK++ + + K+ +KK K RK K +K
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKA 76
Query: 362 KKKKEKRKKR 371
K ++ ++
Sbjct: 77 KHYHKEYRQM 86
Score = 35.6 bits (81), Expect = 0.018
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKK---------KRKKKRKKKKRKKKKRKKEEKKKK 358
KKKK +K+ K KKK K+++ + K K+ ++K K +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 359 KKKKKKKEKRKKR 371
K ++K ++ K
Sbjct: 66 KARRKLIYEKAKH 78
Score = 31.8 bits (71), Expect = 0.33
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E+ ++ R++ K +K +RK K K K+ R+ + + + + RK
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVP 106
Query: 354 EKKK 357
+ K
Sbjct: 107 AEPK 110
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 39.7 bits (92), Expect = 3e-04
Identities = 13/68 (19%), Positives = 34/68 (50%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + ++ K + ++ R+EK K K++KK ++ ++ +K + + + K++ K
Sbjct: 88 DLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Query: 364 KKEKRKKR 371
+K R
Sbjct: 148 QKVAATSR 155
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K R + + +K R+ K + KEKKK ++ +K +K + + K K++ K +K
Sbjct: 91 KERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Query: 362 KKK 364
Sbjct: 151 AAT 153
Score = 37.4 bits (86), Expect = 0.002
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I+E+R K +K R+ K K KEK+K +K +K ++ K + K K++ + +K
Sbjct: 90 IKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Query: 359 KKKK 362
Sbjct: 150 VAAT 153
Score = 35.5 bits (81), Expect = 0.009
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
I R + + RK ++ K K K K+K +K ++ +K + + K K++ K +
Sbjct: 89 LIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQ 148
Query: 356 KKKKK 360
K
Sbjct: 149 KVAAT 153
Score = 35.1 bits (80), Expect = 0.014
Identities = 24/113 (21%), Positives = 42/113 (37%)
Query: 252 EKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK 311
K+R+ R H + + AK V I K R+
Sbjct: 37 ASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSL 96
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K RK + ++ + K+K+K +K +K +K K + K K++ K +K
Sbjct: 97 KPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Score = 35.1 bits (80), Expect = 0.015
Identities = 10/66 (15%), Positives = 31/66 (46%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+++ + + +K + ++ + +++K+ +K RK +K K + + K++ K
Sbjct: 88 DLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Query: 356 KKKKKK 361
+K
Sbjct: 148 QKVAAT 153
Score = 34.7 bits (79), Expect = 0.018
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I E+ +KR +K K +R K+++ K + +K +++K K K KK+ +K
Sbjct: 63 ITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAA 122
Query: 359 KKKKKKKEKRKK 370
+K +K K +
Sbjct: 123 RKAEKAKSAGTQ 134
Score = 33.9 bits (77), Expect = 0.035
Identities = 12/73 (16%), Positives = 36/73 (49%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++ +R ++R+ K + ++ ++++ K ++KK+ +K +K ++ K +
Sbjct: 76 VKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQS 135
Query: 359 KKKKKKKEKRKKR 371
K K++ K +
Sbjct: 136 SKFSKQQAKGAFQ 148
Score = 33.2 bits (75), Expect = 0.056
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ KK+ ++ K ++ K++R K + +K ++++ K K+KKK +
Sbjct: 60 KKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAE 119
Query: 362 KKKKEKRKK 370
K ++ K
Sbjct: 120 KAARKAEKA 128
Score = 32.0 bits (72), Expect = 0.17
Identities = 14/72 (19%), Positives = 33/72 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ E +K+ +K + ++ K ++ + + RK + +K K KE+KK +K
Sbjct: 61 KGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEK 120
Query: 360 KKKKKKEKRKKR 371
+K ++ +
Sbjct: 121 AARKAEKAKSAG 132
Score = 31.6 bits (71), Expect = 0.22
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K + KK+ RK + +R K+++ K +K +++K K ++KKK
Sbjct: 59 HKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKA 118
Query: 360 KKKKKKEKRKK 370
+K +K ++ K
Sbjct: 119 EKAARKAEKAK 129
Score = 29.7 bits (66), Expect = 0.87
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K +K ++ +KR RK K + ++++ K + +K R+++ K K+K
Sbjct: 56 RKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115
Query: 361 KKKKKEKRKKR 371
KK +K RK
Sbjct: 116 KKAEKAARKAE 126
Score = 29.3 bits (65), Expect = 1.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
++ +E+K+ +K ++ K K + K K++ K +K R
Sbjct: 109 LKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR 155
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 41.3 bits (96), Expect = 4e-04
Identities = 13/73 (17%), Positives = 33/73 (45%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + K K+++ R++ + K K K K +K + KKK ++ E++
Sbjct: 466 FEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLM 525
Query: 359 KKKKKKKEKRKKR 371
K + + ++ + +
Sbjct: 526 KLEVQATDREENK 538
Score = 40.9 bits (95), Expect = 5e-04
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 2/128 (1%)
Query: 240 LGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILI 299
L ++ ++ K L A + + ID E L
Sbjct: 428 LKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAK--KEQLA 485
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+R+ K K K + K +K E KKK ++ + + + + + ++ K+
Sbjct: 486 DARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTS 545
Query: 360 KKKKKKEK 367
K +
Sbjct: 546 KLNYLDPR 553
Score = 40.1 bits (93), Expect = 0.001
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + KK++ ++ + K K K + KK + K+K +R +E+ K + +
Sbjct: 471 MNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQ 530
Query: 362 KKKKEKRKKR 371
+E+ K+
Sbjct: 531 ATDREENKQI 540
Score = 38.6 bits (89), Expect = 0.003
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 250 RREKALKRREAMERAKREGSIVSFHH-VNLRDAFAKSMDLIDVIVDTEILIREKRERKRR 308
E + + RA R +I+ H + M+L I + + + R +
Sbjct: 434 PDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKS 493
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K + K K K+ + KKK ++ ++ K + + + + ++ K + R
Sbjct: 494 AKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPR 553
Score = 35.5 bits (81), Expect = 0.027
Identities = 11/65 (16%), Positives = 28/65 (43%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ K ++ + K KK++ ++ K K + K K ++ + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 365 KEKRK 369
+ + +
Sbjct: 519 RLEEQ 523
Score = 35.5 bits (81), Expect = 0.030
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 297 ILIREKRERKRRKKKKKRKRKRK-KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
IL +R + +K + K K+++ +R K K K K K K+ E K
Sbjct: 454 ILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESK 513
Query: 356 KKKKKKKKKKEKRKKR 371
KK ++ +++ + +
Sbjct: 514 KKAVQRLEEQLMKLEV 529
Score = 30.5 bits (68), Expect = 0.92
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K + +K+ KEEK K K++ +K K
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 30.5 bits (68), Expect = 1.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K K K +K K+KK K+++E+K K ++++ E K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 30.1 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + K K KK + +KKK +K+EE+K K ++++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 29.7 bits (66), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ + + K KK + KKK+ KK+ ++K + EE++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.4 bits (60), Expect = 9.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K K K KK + KKK+ KK+ +++ K ++++ + K K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWK 44
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 41.0 bits (95), Expect = 4e-04
Identities = 10/72 (13%), Positives = 36/72 (50%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R + E+ R++ K++ +++K+ E + ++ + + ++ + R + + +
Sbjct: 107 RTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASP 166
Query: 360 KKKKKKEKRKKR 371
K++E+R++
Sbjct: 167 GPSKQQERRRRS 178
Score = 31.0 bits (69), Expect = 0.56
Identities = 2/60 (3%), Positives = 28/60 (46%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ + + ++ ++ + + + + +++++R++ ++ + K ++ + +
Sbjct: 136 RRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQA 195
Score = 30.2 bits (67), Expect = 0.88
Identities = 6/61 (9%), Positives = 26/61 (42%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
++ + + +R + + + K++++++R +EE + K ++ + +
Sbjct: 136 RRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQA 195
Query: 369 K 369
Sbjct: 196 C 196
Score = 27.9 bits (61), Expect = 6.0
Identities = 7/73 (9%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK--RKKEEKKKK 358
+ R+ + + +R + R + + + K+++++R+ ++ + K ++ +
Sbjct: 132 VQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEA 191
Query: 359 KKKKKKKEKRKKR 371
+ +E ++
Sbjct: 192 LYQACVREANARQ 204
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 39.6 bits (92), Expect = 7e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K+K+K+ +KK KK K K+ ++ KK +KKK K KR +
Sbjct: 54 QPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
D I+I+ + R + ++ + ++ +KK ++ R + K++R K +K
Sbjct: 67 DGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKS 126
Query: 354 EKKKKKKKKKKKE 366
K + K +
Sbjct: 127 SVKAMRGKVRSGR 139
Score = 36.7 bits (85), Expect = 0.003
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
R K+ K+ R+ + K++R K +K K R K + +E
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE 140
Score = 32.0 bits (73), Expect = 0.13
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R + +E + ++ +KK R+ + + K+++ K +K K
Sbjct: 76 EYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
Score = 27.0 bits (60), Expect = 5.8
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 275 HVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
+N A A+ L+ +I + + +R + + K+R+ K + K K R K
Sbjct: 81 ELNREAALAR---LVAMIKELTTEKKARRPTRPTRASKERRLASKAQ--KSSVKAMRGKV 135
Query: 335 K 335
+
Sbjct: 136 R 136
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 39.7 bits (92), Expect = 0.001
Identities = 13/70 (18%), Positives = 35/70 (50%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ + E + EK +R ++ + ++K+ K+K + + K++K + + + +
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 352 KEEKKKKKKK 361
+ K+ K+KK
Sbjct: 417 QTLKRDKEKK 426
Score = 39.7 bits (92), Expect = 0.001
Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 257 RREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKR 316
RR +E + + +L++ + + +++K E R+ ++ K
Sbjct: 299 RRCKLEEMGFKDTDPDSKPFSLQETYEAK------RNEFLGELQKKEEEMRQMFVQRVKE 352
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + KE EK+ ++ + +K + +KK+ + K+K + + K++K +
Sbjct: 353 KEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQ 407
Score = 37.8 bits (87), Expect = 0.004
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 240 LGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFA--KSMDLIDVIVDTEI 297
L +M + K +E E + E L+ + M + V
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNE------FLGELQKKEEEMRQMFVQRVKEKEAE 356
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L ++E + + K+ + +K+K ++KKK + K+RK + + +
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 358 KKKKKKKKEK 367
+ K+ K++K
Sbjct: 417 QTLKRDKEKK 426
Score = 28.6 bits (63), Expect = 4.3
Identities = 12/68 (17%), Positives = 34/68 (50%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E RR K ++ K K ++ + KR + + ++K+++ ++ ++ K+K+
Sbjct: 296 ELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEA 355
Query: 364 KKEKRKKR 371
+ ++ +K
Sbjct: 356 ELKEAEKE 363
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 40.0 bits (94), Expect = 0.001
Identities = 8/100 (8%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRK----------RKRKKRKEKEKKKKKRK 332
A D + L++ +++ + + K+ K+ EK K ++
Sbjct: 755 ASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQE 814
Query: 333 KKKRKKK-RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + + + +++ + +
Sbjct: 815 VSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSA 854
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 39.3 bits (91), Expect = 0.001
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R + K ++K K + + KK ++ K KEE+ + K ++
Sbjct: 242 SAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 34.7 bits (79), Expect = 0.040
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ R K EKK K + KK ++ K K++R K ++
Sbjct: 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 33.1 bits (75), Expect = 0.12
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + + +K+ K++ E KK ++ K KE+R R
Sbjct: 237 EDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
Score = 32.0 bits (72), Expect = 0.25
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
R K K+ K++ E KK ++ K ++++ + K ++
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 31.6 bits (71), Expect = 0.41
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E + E R K K+ +++ + KK ++ K K+ + + K
Sbjct: 235 SLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALA 294
Query: 354 EKK 356
++
Sbjct: 295 GQQ 297
Score = 31.2 bits (70), Expect = 0.48
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + +K+ KE+ + KK ++ K K+++ + K ++
Sbjct: 242 SAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 38.7 bits (90), Expect = 0.002
Identities = 7/63 (11%), Positives = 26/63 (41%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + +++ +++ +EKK ++ ++ K K + + K+++K
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 368 RKK 370
+
Sbjct: 327 GSQ 329
Score = 34.5 bits (79), Expect = 0.044
Identities = 8/58 (13%), Positives = 23/58 (39%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++ +++ + KK ++ ++ K K + KEE+K + +
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQ 331
Score = 29.9 bits (67), Expect = 1.3
Identities = 6/49 (12%), Positives = 21/49 (42%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + + +++ R++ ++KK ++ +++ K K +
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHP 312
Score = 29.1 bits (65), Expect = 2.1
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ R++ R+KK ++ ++ + K + + +
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMK 318
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 39.0 bits (90), Expect = 0.002
Identities = 16/74 (21%), Positives = 44/74 (59%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E+ ++EK ++ + + + ++R + +K E + K+ ++K+R+ + +K + ++R E++
Sbjct: 343 EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
Query: 356 KKKKKKKKKKEKRK 369
+ +K K+K K
Sbjct: 403 NSSRTLEKNKKKGK 416
Score = 37.5 bits (86), Expect = 0.005
Identities = 18/115 (15%), Positives = 48/115 (41%)
Query: 257 RREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKR 316
R + G + + L + M+ ++ E + + K K K
Sbjct: 291 RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKV 350
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ K E E +++ + KK + + K+ +K+++ ++EK + +++ E++
Sbjct: 351 QKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSS 405
Score = 36.0 bits (82), Expect = 0.016
Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 226 MTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAF-AK 284
+ V Y + G++ S + E+ + A + + F K
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEM---------EMEQVFEMK 345
Query: 285 SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ + + D+E ++ + E+ ++ + + K +KR++ E +K + ++R +++
Sbjct: 346 VKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSS 405
Query: 345 RKKKKRKKEEK 355
R +K KK+ K
Sbjct: 406 RTLEKNKKKGK 416
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 38.7 bits (89), Expect = 0.002
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 287 DLIDVIVDTEI--LIREKRERKRRKKKKKRKRKRKK------------RKEKEKKKKKRK 332
DL +I E+ +++ + +R++K+K K RK + R
Sbjct: 293 DLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARI 352
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K +++K K+ + + + K K K
Sbjct: 353 KARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
Score = 31.0 bits (69), Expect = 0.63
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKR-------KKKKRKKEEKKKKKKKKKKKEKRKKR 371
K KE K+++++K K K +K E + K +K+K KR K
Sbjct: 308 KPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
Score = 29.8 bits (66), Expect = 1.7
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
D +I + K K ++R+KRK K K +K +
Sbjct: 293 DLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAE-AAR 351
Query: 354 EKKKKKKKKKKKEKRKKR 371
K +K+K K+ K
Sbjct: 352 IKARKEKLDSKRTKLSPE 369
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 38.1 bits (88), Expect = 0.002
Identities = 10/71 (14%), Positives = 32/71 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E++ + +K K++ + + + + +K K K ++++ K++ +++ +
Sbjct: 107 GEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIE 166
Query: 360 KKKKKKEKRKK 370
K K +K
Sbjct: 167 KAAVKSKKATD 177
Score = 35.8 bits (82), Expect = 0.014
Identities = 11/76 (14%), Positives = 32/76 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
L +E ++ +++ + K+ K + + + + + +K K + E++
Sbjct: 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQE 153
Query: 356 KKKKKKKKKKEKRKKR 371
+ KK+ ++E K
Sbjct: 154 RLKKEGATQREIEKAA 169
Score = 34.7 bits (79), Expect = 0.040
Identities = 9/68 (13%), Positives = 31/68 (45%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ ++ K K+ +++ + + + + ++ K+ K ++E KK+ ++
Sbjct: 104 QKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQR 163
Query: 364 KKEKRKKR 371
+ EK +
Sbjct: 164 EIEKAAVK 171
Score = 33.1 bits (75), Expect = 0.10
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKEEKKKKK 359
+K ++ K KK K + E + + + +K K K +++R K+E ++
Sbjct: 104 QKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQR 163
Query: 360 KKKKKKEKRKK 370
+ +K K KK
Sbjct: 164 EIEKAAVKSKK 174
Score = 32.7 bits (74), Expect = 0.15
Identities = 9/100 (9%), Positives = 37/100 (37%)
Query: 272 SFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKR 331
+ + + + + + K + ++ +K + + K K+ +++
Sbjct: 65 YSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGT 124
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + + +K K K ++++ KK+ ++
Sbjct: 125 LEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQRE 164
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 38.6 bits (89), Expect = 0.003
Identities = 11/84 (13%), Positives = 26/84 (30%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ + + + + + + + R RK+ E KK K + + + K
Sbjct: 67 KVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVP 126
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKK 370
+ K K + E +
Sbjct: 127 ADHELRMLKVPYIKSMENIEGGIQ 150
Score = 28.9 bits (64), Expect = 2.9
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
NL+ F S D L E + + + + + + + + +
Sbjct: 26 NLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSG 85
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R + RK+ + KK K +
Sbjct: 86 RYVRVHDA-IFRLRKQLAEALGKKYKIGIRGIEVE 119
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 37.8 bits (87), Expect = 0.004
Identities = 18/96 (18%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIRE-KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
R+ A+++ + V ++ +E K+ERK ++ +R +++ + K+ + KRK ++
Sbjct: 83 GQRELVAENL-SVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFER 141
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ +K + ++ ++ K +K K++ R
Sbjct: 142 DCREAEKAAQTAERLDQDINATKADVEKAKQQAHLR 177
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 37.3 bits (87), Expect = 0.004
Identities = 8/75 (10%), Positives = 33/75 (44%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
++D ++ R+ E+ +R + + + ++ +K+ ++ + + + R +
Sbjct: 98 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 157
Query: 351 KKEEKKKKKKKKKKK 365
+K +K + + +
Sbjct: 158 EKLDKLPRDRWLELG 172
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 36.5 bits (84), Expect = 0.004
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K + + +K K +K R+ K K++ K+ K K +KK + K+
Sbjct: 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKS 140
Query: 370 KR 371
Sbjct: 141 DH 142
Score = 31.1 bits (70), Expect = 0.25
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K E R +K K ++ + K+ K++ K+ K K +KK + KK
Sbjct: 80 LLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKK 139
Query: 360 KKKKK 364
K
Sbjct: 140 SDHLK 144
Score = 29.6 bits (66), Expect = 0.81
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
L + K ++ ++ K ++K K K + ++K + KK
Sbjct: 88 RLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKK 139
Score = 27.3 bits (60), Expect = 6.1
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + + +K + ++ R+ K K+K K+ K K +K+
Sbjct: 80 LLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWA 133
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 37.9 bits (88), Expect = 0.004
Identities = 9/51 (17%), Positives = 30/51 (58%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ ++ +KR+E E+K ++ K K K ++++ ++++K+ + + + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 37.2 bits (86), Expect = 0.007
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ KE +K+++ +K +R K K+K K++ K++++++ + ++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 35.6 bits (82), Expect = 0.020
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K +KR++ +EK ++ K K+K K++ +K++++++ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 34.5 bits (79), Expect = 0.047
Identities = 12/82 (14%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK------- 348
+ ++ +E ++R++ +++ R+ K KEK +K++ K++KR++ +
Sbjct: 374 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSL 433
Query: 349 --KRKKEEKKKKKKKKKKKEKR 368
+ ++K+ ++ ++
Sbjct: 434 LEALQSGAAFRRKRGPRQVNRK 455
Score = 34.1 bits (78), Expect = 0.080
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++ +KR++ +K +R K ++K EK++ +K++K+++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLID 419
Score = 33.7 bits (77), Expect = 0.11
Identities = 10/40 (25%), Positives = 27/40 (67%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K +KR++ + K ++ K ++K +K++ +K++KR++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQ 416
Score = 27.9 bits (62), Expect = 6.9
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++ +KR++ + K K K+K +K+ K++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQ 412
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 37.6 bits (87), Expect = 0.005
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ K+ +K+KE+E+++ + + + ++++ +++K +K K EE
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 31.8 bits (72), Expect = 0.41
Identities = 12/79 (15%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR------KKKRKKKKRKKKKRKK 352
+R+K+E + R+ + + + K ++ +E++ +K K ++ + + K K
Sbjct: 398 MRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVFDKDLSK 457
Query: 353 EEKKKKKKKKKKKEKRKKR 371
++ +K+ + + ++R
Sbjct: 458 LKRNRKRITNQMTDSSRER 476
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 37.3 bits (86), Expect = 0.006
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK + K +K+ K+ KK E++K ++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291
Score = 35.0 bits (80), Expect = 0.030
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K R + K +K+ K+ KK ++RK ++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGA 294
Score = 33.5 bits (76), Expect = 0.091
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KK R + KK+ K+ KK ++RK ++ ++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDE 299
Score = 31.6 bits (71), Expect = 0.39
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
IR + KK+ KR K+ +++K +R ++E+
Sbjct: 247 IRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEED 302
Score = 30.4 bits (68), Expect = 0.97
Identities = 6/50 (12%), Positives = 18/50 (36%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K K++ K+ KK +++K ++ ++++
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEED 302
Score = 29.2 bits (65), Expect = 2.2
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ +KE K+ KK ++RK ++ +++ ++
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
Score = 28.5 bits (63), Expect = 3.9
Identities = 10/60 (16%), Positives = 18/60 (30%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK R + KK+ KR +K ++K E + ++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300
Score = 28.1 bits (62), Expect = 4.5
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ D + E+ K + + +K E KK R K KK+
Sbjct: 204 VADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKE--- 260
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
K+ KK E+RK
Sbjct: 261 PATHKRYNLKKLTYEQRKAS 280
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 37.0 bits (85), Expect = 0.007
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 182 LGLLMLFLAMGVLIFSSLAYFAEKDEHD-------------TKFVSIPETFWWAGITMTT 228
L + ++ + L F + + D T F ++ T TT
Sbjct: 46 LLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETT 105
Query: 229 VGYGDICPT 237
+GYG T
Sbjct: 106 IGYGYRVIT 114
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 36.9 bits (86), Expect = 0.008
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KR KK + + R E E KK K KK K+ + + ++K K
Sbjct: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Score = 30.0 bits (68), Expect = 1.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
KR KK + + R + + KK + KK K+ +
Sbjct: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGE 40
Score = 27.3 bits (61), Expect = 7.8
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KR KK + + + + KK K K+
Sbjct: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKND 34
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 36.3 bits (83), Expect = 0.011
Identities = 13/68 (19%), Positives = 30/68 (44%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I+ ++ K+ ++ K+ ++ +K +K KK K+ KK K+E+
Sbjct: 119 IKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178
Query: 359 KKKKKKKE 366
++ K +
Sbjct: 179 REANSKAD 186
Score = 33.2 bits (75), Expect = 0.11
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ ++ K+ K+ KE E +K +K KK ++ + KK +++K +
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISR 179
Query: 363 KKKEKRK 369
+ K
Sbjct: 180 EANSKAD 186
Score = 32.9 bits (74), Expect = 0.14
Identities = 15/95 (15%), Positives = 39/95 (41%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+L + + + + ++ +E K + ++ +K +K KE + K+
Sbjct: 110 SLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAA 169
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ K ++ K + ++ KK ++K +K
Sbjct: 170 CKEEKLAISREANSKADPSLNPEQLKKLQDKIEKC 204
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 36.2 bits (83), Expect = 0.012
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+KK KK+ KKK+ + K +KK + +KK R
Sbjct: 253 YEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRA 290
Score = 35.4 bits (81), Expect = 0.021
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KK R+ ++K KK+ K+K+ R K +K+ + +KK + +++
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 35.0 bits (80), Expect = 0.030
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ +E +KK KK+ +KK+ + K ++K +KK + +E+
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 33.5 bits (76), Expect = 0.099
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK R+ +KK +K+ +KK+ + K ++K R
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDR 279
Score = 31.2 bits (70), Expect = 0.56
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ D + E+ E +K+ + + E+ KK R+ +KK KK+ +K
Sbjct: 204 VADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK 263
Query: 352 KEEKKKKKKKKKKKEKRKKR 371
K + K +KK++ ++
Sbjct: 264 KRWNRPKMSLAQKKDRVAQK 283
Score = 30.8 bits (69), Expect = 0.62
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KK R+ ++K KK+ KKK + R K +KK + +KK + +++
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKK--RWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
Score = 30.4 bits (68), Expect = 0.85
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K ++ KK K++ KKK+ + K ++K + +KK +++
Sbjct: 242 KAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 30.0 bits (67), Expect = 1.0
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+K R+ K+ +K+ K+K + K ++K + +KK + ++ +
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296
Score = 28.9 bits (64), Expect = 2.6
Identities = 9/62 (14%), Positives = 29/62 (46%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
E + ++ R ++K K++ +K++ + K +K+ + +KK + +++
Sbjct: 235 MMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
Query: 354 EK 355
+
Sbjct: 295 AE 296
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome,
RNA modifying enzyme, isomerase; 2.60A {Escherichia
coli}
Length = 237
Score = 36.1 bits (84), Expect = 0.012
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ + K + K K KR K ++ +K + K+ RKKK R
Sbjct: 189 EVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 237
Score = 32.6 bits (75), Expect = 0.15
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ + + + K+ K +K EK + K+ RKKK R
Sbjct: 192 PKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 237
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 35.0 bits (80), Expect = 0.014
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
KK + K + + K +K RK+ K +K R KK R KK K + KKK
Sbjct: 89 KKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 29.2 bits (65), Expect = 1.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 306 KRRKKKKKRKRKRKKRKE-KEKKKKKRKKKKRKKKRKKKKR 345
R K ++ RK+ KE K + KK R KK K KK+
Sbjct: 98 IRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 28.4 bits (63), Expect = 2.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ K +K +K+ K++K + KK + +K K KKK
Sbjct: 98 IRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 36.1 bits (83), Expect = 0.014
Identities = 8/77 (10%), Positives = 27/77 (35%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ R KKK+ ++R +E + + +R+++ + ++ +
Sbjct: 105 QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEG 164
Query: 354 EKKKKKKKKKKKEKRKK 370
+ + ++ K
Sbjct: 165 HEDDGHIRAQQACIEAK 181
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 36.3 bits (83), Expect = 0.015
Identities = 14/85 (16%), Positives = 39/85 (45%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
DL + L+ +R++ R+ ++ ++ +++ + + ++ K + + + +
Sbjct: 94 DLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQA 153
Query: 347 KKKRKKEEKKKKKKKKKKKEKRKKR 371
K+K ++ K K + K K K R
Sbjct: 154 KRKYQEASKDKDRDKAKDKYVRSLW 178
Score = 34.8 bits (79), Expect = 0.045
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ ++ + +++ L + + R++ +K ++ ++ ++E K + ++ K
Sbjct: 82 EGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKS 141
Query: 340 RKKKKRKKK---KRKKEEKKKKKKKKKKKEKRKK 370
+ + + KRK +E K K + K K+K +
Sbjct: 142 QYRALARDSAQAKRKYQEASKDKDRDKAKDKYVR 175
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 36.0 bits (82), Expect = 0.015
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I+ ++ K+ ++ K+ ++ +K +K KK K+ KK K+E+
Sbjct: 119 IKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178
Query: 359 KKKKKKKEK 367
++ K +
Sbjct: 179 REANSKADP 187
Score = 33.7 bits (76), Expect = 0.094
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ ++ K+ K+ KE E +K +K KK ++ + KK +++K +
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISR 179
Query: 363 KKKEKRKK 370
+ K
Sbjct: 180 EANSKADP 187
Score = 33.7 bits (76), Expect = 0.095
Identities = 15/95 (15%), Positives = 39/95 (41%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+L + + + + ++ +E K + ++ +K +K KE + K+
Sbjct: 110 SLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAA 169
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ K ++ K + ++ KK ++K +K
Sbjct: 170 CKEEKLAISREANSKADPSLNPEQLKKLQDKIEKC 204
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 35.6 bits (83), Expect = 0.016
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K + ++ +++ K++++ + ++EE+KK K KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 33.0 bits (76), Expect = 0.11
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K + E+ ++ + K +K+ + ++ ++E+K K KK +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 33.0 bits (76), Expect = 0.14
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + ++ +++ K +K+ + +EE+++KK K KK EK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 31.8 bits (73), Expect = 0.31
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + + + ++ K++K E+++++KK K K+ K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.4 bits (72), Expect = 0.40
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + +E ++++ K++K + ++++ KK + KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 35.7 bits (81), Expect = 0.020
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++ ++ K+ ++ K+ ++ +K +K KK K+ KK K+E
Sbjct: 110 VKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMT 169
Query: 359 KKKKKKKEK 367
++ K E+
Sbjct: 170 REMNSKTEQ 178
Score = 31.4 bits (70), Expect = 0.39
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ ++ +E K + ++ +K +K KE + K+ K+ + ++ K E+
Sbjct: 119 HKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQ 178
Query: 355 KKKKKKKKKKKEKRKKR 371
+++KK +K K
Sbjct: 179 SVTPEQQKKLVDKVDKC 195
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 34.4 bits (79), Expect = 0.022
Identities = 6/59 (10%), Positives = 19/59 (32%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
R+ R K + K R + + + ++ K + + + + + +
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQGE 166
Score = 34.4 bits (79), Expect = 0.027
Identities = 7/59 (11%), Positives = 18/59 (30%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
RE + + + K R R + ++ K + + E + + +
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQGE 166
Score = 34.0 bits (78), Expect = 0.030
Identities = 6/57 (10%), Positives = 17/57 (29%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
R+ + K + K + + K R ++ K + + + +
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQ 164
Score = 30.9 bits (70), Expect = 0.34
Identities = 4/50 (8%), Positives = 14/50 (28%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
I+ R R + + ++ K + + + + +
Sbjct: 117 IKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQGE 166
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.5 bits (82), Expect = 0.022
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ KE +K+++ +K +R K K+K K++ K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.7 bits (80), Expect = 0.035
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ K +KR++ +EK ++ K K+K K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.7 bits (80), Expect = 0.037
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ ++ +KR+E E+K ++ K K K ++++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.7 bits (80), Expect = 0.043
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ ++ +KR++ +K +R K ++K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.045
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ K+ +K++ ++K ++ K KE+ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.061
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ K +KR++ + K ++ K ++K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.070
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K+ +KR++ + K +R K ++K ++++ EK+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.099
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
+ ++ +K+++ ++ R+ + KEK +K+R +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.10
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ K+ +KR+ +K + + K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.12
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K+ +K+R+ +++ ++ + +EK +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.13
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKK 330
+E ++R+ ++K +R + K++ EKE+ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.13
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ ++ +K +E ++K R+ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.13
Identities = 9/38 (23%), Positives = 25/38 (65%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
+ ++ +E ++R++ +++ R+ K KEK +K++ K+
Sbjct: 303 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.15
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ ++ +K+++ ++K R+ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.16
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ K +K+R+ +EK ++ + K++ +K + +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.16
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ K+ +++++ ++K R+ K K++ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.17
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K+ +K+++ ++K R+ + K+K +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.17
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ K +K+R+ + K ++ K K K E+++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.18
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K+ +++++ +K + K K+K +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.18
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+ K+ +KR+ + K + K K K +K + +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.22
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ ++ +++++ +K +R K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.37
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K+ +K++ ++K ++ + K+K +K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.45
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+ K +K+++ + K ++ K ++K +K + +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.45
Identities = 3/35 (8%), Positives = 23/35 (65%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ ++ +++++ + K ++ K ++K ++++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.46
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ ++ +K+R+ +++ ++ K K K +K + E++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.65
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++ +KR++ + K K K+K +K+ K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.72
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ K+ +++++ +K R+ K K+K K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.87
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ K +K+R+ +++ + K K+K +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 35.0 bits (80), Expect = 0.023
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R+ K K K ++ + K ++ K + +K K R
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLR 72
Score = 31.5 bits (71), Expect = 0.30
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ K K K +K + K + + +K K +
Sbjct: 22 RRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRS 73
Score = 30.8 bits (69), Expect = 0.53
Identities = 6/60 (10%), Positives = 15/60 (25%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ R+ + K K K + + + + +K + R
Sbjct: 16 RSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTI 75
Score = 30.4 bits (68), Expect = 0.67
Identities = 8/62 (12%), Positives = 17/62 (27%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KR + ++ K + K ++ + K K + K K
Sbjct: 12 KRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKL 71
Query: 362 KK 363
+
Sbjct: 72 RS 73
Score = 28.8 bits (64), Expect = 2.6
Identities = 5/70 (7%), Positives = 17/70 (24%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R K K + ++ + K K + ++ + +
Sbjct: 22 RRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVL 81
Query: 362 KKKKEKRKKR 371
+ +
Sbjct: 82 ILLAGRYMGK 91
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 35.8 bits (83), Expect = 0.024
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+K K E+ K+K R + ++ K KKK + KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 34.2 bits (79), Expect = 0.068
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++ K +R K+K + K+ K KKK K KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 33.4 bits (77), Expect = 0.12
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
++ K + K+K + + K+ + KKK K K+
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
++ K +R +++ R + K+ K +KK K KK
Sbjct: 732 QKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 35.4 bits (81), Expect = 0.024
Identities = 17/96 (17%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIRE-KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
+ +++M +IVD ++E K+ERK ++ ++ + K+ + KR+ ++
Sbjct: 90 GQHEVISENM-ASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFER 148
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ + ++ +K + K +K +++ + R
Sbjct: 149 DCKEADRAQQYFEKMDADINVTKADVEKARQQAQIR 184
Score = 32.7 bits (74), Expect = 0.16
Identities = 8/63 (12%), Positives = 25/63 (39%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E ++ K++ +R K+ ++ +K K +K +++ + + + +
Sbjct: 132 IETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDS 191
Query: 360 KKK 362
K
Sbjct: 192 KAD 194
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 35.6 bits (82), Expect = 0.025
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ K+ ++K + KK+ K + E + + K K
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPK 673
Score = 32.9 bits (75), Expect = 0.19
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ ++K KK+ K R +E + + K K
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPK 673
Score = 31.7 bits (72), Expect = 0.43
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ ++K + KK+ K + + + K
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAH 670
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 35.2 bits (80), Expect = 0.026
Identities = 9/65 (13%), Positives = 19/65 (29%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+K K RK +K+K + ++ K K K +++ +
Sbjct: 7 TARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQEKTPHVDYNAPLNPK 66
Query: 367 KRKKR 371
Sbjct: 67 SELFL 71
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 35.2 bits (80), Expect = 0.028
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+R + + R + ++ +K +K K+ K+ KK RK E+ +
Sbjct: 110 VRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQT 169
Query: 359 KKKKKKKEK 367
++ K +
Sbjct: 170 RESHAKADS 178
Score = 32.9 bits (74), Expect = 0.16
Identities = 11/95 (11%), Positives = 37/95 (38%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
L ++ + ++ R + + ++ +K ++ KE + K+
Sbjct: 101 KLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K K + ++ K + +++ +K +E+ +
Sbjct: 161 RKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRC 195
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 34.7 bits (79), Expect = 0.036
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ K KK K KR KK K ++K + K K + +
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 32.4 bits (73), Expect = 0.20
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
EK K + RK + K KK + K + KK K +RK R
Sbjct: 244 EKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDR 290
Score = 31.6 bits (71), Expect = 0.40
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K RK + + KK K K+ KK K +RK K K + +
Sbjct: 248 TKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 29.3 bits (65), Expect = 1.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
IR+ ER + KK + ++ K+ K +RK + K K + +
Sbjct: 254 IRKNPERVKSTKKNDKPKRDHKKF----YPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 27.4 bits (60), Expect = 7.6
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKK-RKKKRKKKKRKKKKRKKEEKKKKK 359
+ RK + + K+ K KR KK K +RK + + K + +
Sbjct: 251 HAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 33.1 bits (75), Expect = 0.037
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K K + +K+ ++ + K KK K+ +++ K +K K +K +
Sbjct: 32 IITKSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVG 91
Query: 367 KRKK 370
+
Sbjct: 92 VKAA 95
Score = 31.1 bits (70), Expect = 0.17
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
R KK ++ K KK KR +++ K K + +K E K ++ KK
Sbjct: 44 RTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKK 101
Score = 29.6 bits (66), Expect = 0.60
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
KK ++ +++ K ++ K +K + K + KK + E
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDT 108
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 34.9 bits (80), Expect = 0.038
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++ K R+ + R + K ++K+ + K KKK K K K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.9 bits (75), Expect = 0.17
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 323 EKEKKKKKRKKKKR-------KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++ K ++ + R KRK+ + K KKK K K KR K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 34.7 bits (79), Expect = 0.045
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKR---KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R + ++K K+ E++++ K ++ K + K KK + +K +
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQA 447
Query: 365 KEKRK 369
E+ K
Sbjct: 448 MEEEK 452
Score = 31.2 bits (70), Expect = 0.55
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 324 KEKKKKKRKKKKRKKKRKK------KKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ ++K K+ ++ ++ KK ++ K+E K KK + +K
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEK 441
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 33.0 bits (75), Expect = 0.046
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
KK + R + ++ +K R+++K+KK R KK KR ++ ++
Sbjct: 80 AEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 31.5 bits (71), Expect = 0.20
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+K + R + +K +K R+++++KK R KK ++ KK ++ +
Sbjct: 83 KKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
Score = 29.5 bits (66), Expect = 0.76
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+ EK E+ R+++K++K + KK K+ K+ ++
Sbjct: 96 LAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+K E R + K +K +++K+KK + KK K+ +K +R +
Sbjct: 83 KKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
Score = 27.2 bits (60), Expect = 5.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ +K K R+++K+KK + KK K+ KK +
Sbjct: 92 VRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 34.9 bits (81), Expect = 0.048
Identities = 11/69 (15%), Positives = 25/69 (36%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
A + +D +V + L + +R + K K++ + EK K ++ + K
Sbjct: 179 ALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAK 238
Query: 343 KKRKKKKRK 351
+
Sbjct: 239 GFVAGQAGP 247
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 34.6 bits (80), Expect = 0.049
Identities = 8/66 (12%), Positives = 21/66 (31%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
S+ LID +V L+ R +++ K + ++ + +
Sbjct: 178 GHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQ 237
Query: 343 KKRKKK 348
++
Sbjct: 238 TLKRAP 243
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 34.0 bits (77), Expect = 0.052
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 148 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE 207
++ + +L + + + + F + +FS L E
Sbjct: 145 RITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVL-------E 197
Query: 208 HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGK 242
D F+ E+F++ I+++T+G GD P +
Sbjct: 198 DDWNFL---ESFYFCFISLSTIGLGDYVPGEGYNQ 229
Score = 33.3 bits (75), Expect = 0.092
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 193 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMI 244
VL S+ ++A ++T GYG P + GK
Sbjct: 72 VLEASNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAF 123
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 34.4 bits (78), Expect = 0.053
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 183 GLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT--TPL 240
GL+ +A+ + + F ++ T TT+GYG C T PL
Sbjct: 63 GLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122
Query: 241 GKMIGSNQM 249
+ Q
Sbjct: 123 AVFMVVVQS 131
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 34.1 bits (77), Expect = 0.069
Identities = 6/56 (10%), Positives = 22/56 (39%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
R + K+ K + + K + +K + +R ++ + + + + + +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 32.1 bits (72), Expect = 0.25
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ D+ T+ L E R R K+ RK + + + + +K + +R ++ + + +
Sbjct: 284 MQDLQEVTQDLHYE-NFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQ 342
Query: 348 KKRKKEEKKKKKKKKKKK 365
+ + +
Sbjct: 343 MQMQMQGGDGDGGALGHH 360
Score = 31.0 bits (69), Expect = 0.56
Identities = 4/49 (8%), Positives = 22/49 (44%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
E + ++ ++ ++ + K + K+ E ++ ++ + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQM 345
Score = 29.8 bits (66), Expect = 1.5
Identities = 5/51 (9%), Positives = 24/51 (47%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R E+ K+ ++ + + K + K+ + ++ ++ + + + + + +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
Score = 29.4 bits (65), Expect = 1.7
Identities = 9/82 (10%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
D + +LI ++ + + + R +R ++ +K + + + + +K+ +
Sbjct: 272 DFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAEL-- 329
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
R+ +E + + + + + +
Sbjct: 330 RRMQEMIARMQAQMQMQMQGGD 351
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 33.3 bits (75), Expect = 0.076
Identities = 10/63 (15%), Positives = 25/63 (39%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K K + + + E E + + +K + + +RK+ K +E K+ + +
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQ 166
Query: 365 KEK 367
+
Sbjct: 167 MQA 169
Score = 31.7 bits (71), Expect = 0.27
Identities = 7/60 (11%), Positives = 21/60 (35%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K K + K+ + + + + K + +K +K ++ K+ +
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQ 166
Score = 31.3 bits (70), Expect = 0.38
Identities = 10/68 (14%), Positives = 31/68 (45%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K + + + + + ++ E + +RK+ K ++ K+ + + + + K+
Sbjct: 118 KDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRA 177
Query: 362 KKKKEKRK 369
+ +EKR+
Sbjct: 178 AELEEKRR 185
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 33.3 bits (77), Expect = 0.094
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI 292
++A+ K G ++SF N+R ++ D +
Sbjct: 151 KKAVTIVKANGGVISF-DPNIRKEMLDIPEMRDAL 184
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 32.9 bits (75), Expect = 0.096
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR---KKEEKKK 357
E+ E ++ R K + +K R + ++ ++ +
Sbjct: 109 EEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDG 168
Query: 358 KKKKKKKKEK 367
+ K KEK
Sbjct: 169 DQDGKDAKEK 178
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 33.4 bits (76), Expect = 0.099
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
R+ ++ + + R K KR ++
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 32.6 bits (74), Expect = 0.19
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
R+ + + ++ + + KR RK
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 32.6 bits (74), Expect = 0.21
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
R+ +E + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 31.8 bits (72), Expect = 0.38
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
RR ++ + + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 31.8 bits (72), Expect = 0.38
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+R ++ + + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 31.5 bits (71), Expect = 0.41
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
R+ ++ + ++ + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 31.1 bits (70), Expect = 0.53
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
R+ ++ + + R K K+ RK
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 30.7 bits (69), Expect = 0.80
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
R+ ++ + R R + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 30.7 bits (69), Expect = 0.80
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ ++ + R R + KR ++
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVS 34
Score = 30.3 bits (68), Expect = 1.2
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
R + + + R K K +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.9 bits (67), Expect = 1.3
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.9 bits (67), Expect = 1.5
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
++ ++ + + + K KR ++
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 29.5 bits (66), Expect = 1.7
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+R ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 29.5 bits (66), Expect = 1.9
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+R ++ + R + K K+ ++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 2.3
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 336 RKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
++ ++ + + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 3.1
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 3.2
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 3.3
Identities = 1/34 (2%), Positives = 12/34 (35%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ ++ + + + + ++ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 3.4
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
++ + + R K ++ RK
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 3.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 300 REKRERKRRKKKKKRKRKRKKRK 322
R+ R K KR RK
Sbjct: 13 RDISSRSNGKNPFKRSTGRKVSN 35
Score = 27.6 bits (61), Expect = 7.0
Identities = 1/33 (3%), Positives = 10/33 (30%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
R + + + + + ++ ++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 32.4 bits (73), Expect = 0.099
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K + R+ + E KKR K K EK + K+ RK
Sbjct: 13 RKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRK 70
Score = 27.8 bits (61), Expect = 3.9
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R R+ + KK+ K K +K + K+ R
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIR 69
Score = 27.8 bits (61), Expect = 4.1
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K + R+ + E KK+ + K ++ + K+ K
Sbjct: 13 RKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRK 70
Score = 27.4 bits (60), Expect = 4.2
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K RR + +K+ K K +K + ++ +K
Sbjct: 14 KLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRK 70
Score = 27.4 bits (60), Expect = 5.4
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
R R+ + + KKR K K ++ + K+ +K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRK 70
Score = 26.6 bits (58), Expect = 8.6
Identities = 6/62 (9%), Positives = 17/62 (27%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ R+ + ++ + K++ K + K K+
Sbjct: 9 LNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAI 68
Query: 359 KK 360
+K
Sbjct: 69 RK 70
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 33.0 bits (75), Expect = 0.10
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ +K +KK+ +EKK+ + +++K E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.3 bits (63), Expect = 3.6
Identities = 8/59 (13%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 318 RKKRKEKEKKKKKRKKKKRKK-------KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ KE + K+ + + ++++KK+ ++KK+ + +++K +
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 33.4 bits (77), Expect = 0.11
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKK--KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ K + KK +K+ K+ + K+ K +K++ ++K+ +K+ +
Sbjct: 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98
Query: 362 KKKKEK 367
K + K
Sbjct: 99 KNLRSK 104
Score = 32.2 bits (74), Expect = 0.25
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K R + ++ KK +++ ++ K ++ K EK+K +KK+ ++
Sbjct: 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 32.9 bits (74), Expect = 0.11
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 262 ERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKR----K 317
E H + + + + K KKK + KR +
Sbjct: 93 EYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQ 152
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R +K ++R KK+ ++ + K E+ + ++K ++K+ R
Sbjct: 153 VMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLR 206
Score = 32.5 bits (73), Expect = 0.16
Identities = 13/72 (18%), Positives = 34/72 (47%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I++K E KR + + R + +E+ KK+ ++ + K +K + ++K +
Sbjct: 139 IKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLE 198
Query: 359 KKKKKKKEKRKK 370
+K+ + ++
Sbjct: 199 EKQAENLRAIQE 210
Score = 30.9 bits (69), Expect = 0.56
Identities = 12/72 (16%), Positives = 36/72 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K ++R KK+ ++ + + +K + ++K + K+ + + ++KE + ++
Sbjct: 158 TSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ 217
Query: 359 KKKKKKKEKRKK 370
+ + +EK K
Sbjct: 218 EAVAEYEEKLKT 229
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 33.1 bits (75), Expect = 0.12
Identities = 6/56 (10%), Positives = 22/56 (39%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K KK+K R+ ++ + + + + + + +E+ + + + +
Sbjct: 200 KYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAV 255
Score = 32.0 bits (72), Expect = 0.27
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 17/64 (26%)
Query: 324 KEKKKKKRKKKKRKKKRKK-----------------KKRKKKKRKKEEKKKKKKKKKKKE 366
+ K K KK+K R+ + + E + K++ + + E
Sbjct: 192 LDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAE 251
Query: 367 KRKK 370
Sbjct: 252 AEAV 255
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 33.1 bits (76), Expect = 0.12
Identities = 2/57 (3%), Positives = 17/57 (29%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
R+ + + E++++ + + + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 33.1 bits (76), Expect = 0.15
Identities = 3/57 (5%), Positives = 16/57 (28%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
R+ + + + +++ R K + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 30.8 bits (70), Expect = 0.70
Identities = 3/57 (5%), Positives = 15/57 (26%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
++ R + ++ ++ + K + E + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 30.8 bits (70), Expect = 0.72
Identities = 4/57 (7%), Positives = 16/57 (28%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ + + E+E++ + K R + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 29.6 bits (67), Expect = 1.7
Identities = 2/56 (3%), Positives = 16/56 (28%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++ R + ++ ++ + + + + + + + R
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGR 320
Score = 27.3 bits (61), Expect = 9.3
Identities = 2/57 (3%), Positives = 15/57 (26%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
R+ + + +++++ R + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 32.8 bits (74), Expect = 0.16
Identities = 11/66 (16%), Positives = 25/66 (37%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ +++ + ++RK ++ KK +K K K K K K E ++
Sbjct: 99 KTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQE 158
Query: 361 KKKKKE 366
+ +
Sbjct: 159 RNANAD 164
Score = 32.5 bits (73), Expect = 0.21
Identities = 11/70 (15%), Positives = 27/70 (38%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ERK + K+ +K + + +K K K + +++ + +
Sbjct: 113 IKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQV 172
Query: 362 KKKKEKRKKR 371
KK ++ +K
Sbjct: 173 KKMHDRVQKT 182
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 33.1 bits (75), Expect = 0.17
Identities = 8/76 (10%), Positives = 18/76 (23%), Gaps = 4/76 (5%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK----KRKKKKRKKEE 354
+ R+ K R K K + + +K+
Sbjct: 127 TQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDG 186
Query: 355 KKKKKKKKKKKEKRKK 370
+ K+ K++
Sbjct: 187 LRLWGSWKRGKDESDL 202
Score = 31.2 bits (70), Expect = 0.66
Identities = 7/70 (10%), Positives = 13/70 (18%), Gaps = 4/70 (5%)
Query: 304 ERKRRKKKKKRKRKRKKR----KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ +R R K R K K
Sbjct: 119 SSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAA 178
Query: 360 KKKKKKEKRK 369
+ +K+ +
Sbjct: 179 QPTIRKDGLR 188
Score = 29.3 bits (65), Expect = 2.4
Identities = 4/61 (6%), Positives = 10/61 (16%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ + + ++ R K R + K
Sbjct: 110 WNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSAN 169
Query: 370 K 370
Sbjct: 170 M 170
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 32.6 bits (75), Expect = 0.17
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMD 287
E M RA+ G+IVSF +N R + +
Sbjct: 150 FEGMRRAQAAGAIVSF-DLNFRPMLWPNGE 178
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 31.1 bits (70), Expect = 0.17
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ K + K ++KKKK K K+KEK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 30.4 bits (68), Expect = 0.27
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KK K K K K+K+KK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 29.2 bits (65), Expect = 0.77
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
KK + K + K+KKKK K K+K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 29.2 bits (65), Expect = 0.87
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KK K K K K++KKK K K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK K K K K+KKKK K ++++K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.4 bits (63), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K+ + K K K++KKK K K+++K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.4 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
KK K + K K+KKKK K ++K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.4 bits (63), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+K K K K K++KKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.0 bits (62), Expect = 1.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
KK K K + K+KKKK K ++K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.0 bits (62), Expect = 2.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
KK + K K K+++KK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.7 bits (61), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
KK K K K K+K+KK + K+K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.7 bits (61), Expect = 2.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
K+ + + K K+K+KK K K+++K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
KK + + K K++KKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.9 bits (59), Expect = 4.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KK K K + K+KKKK K K++
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 26.5 bits (58), Expect = 6.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
KK K K K K+KK+K K K+K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.5 bits (58), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
K+ K + K K+KKKK K K+++K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.5 bits (58), Expect = 6.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
KK K K + K+K+KK + K+++K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
++ K K K ++KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 32.6 bits (74), Expect = 0.18
Identities = 10/61 (16%), Positives = 18/61 (29%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
RKK + K K +K + K++ + E + K+ E
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 367 K 367
Sbjct: 296 L 296
Score = 32.2 bits (73), Expect = 0.27
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ ++ +++ K KK K + K + ++K + K K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 366 EKRKKR 371
K +
Sbjct: 254 NAEKVQ 259
Score = 29.1 bits (65), Expect = 2.3
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
E ++ K+K K +K + + K + +KK + + K +
Sbjct: 197 PTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAE 256
Query: 362 KKKKEKRKK 370
K +
Sbjct: 257 KVQTAGIVT 265
Score = 29.1 bits (65), Expect = 2.6
Identities = 9/61 (14%), Positives = 18/61 (29%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K + K + +KK + K K +K + K++ E +
Sbjct: 220 KVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNE 279
Query: 370 K 370
Sbjct: 280 V 280
Score = 28.3 bits (63), Expect = 3.7
Identities = 12/68 (17%), Positives = 21/68 (30%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
E +K K K K +K K + K + +KK + K K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 363 KKKEKRKK 370
++ +
Sbjct: 254 NAEKVQTA 261
Score = 28.3 bits (63), Expect = 4.2
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK-KRKKKKRKKEE 354
+ L + + KK K + K + +KK + K K K +
Sbjct: 201 QKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQT 260
Query: 355 KKKKKKKKKKKEKRKK 370
K++ +
Sbjct: 261 AGIVTPYDILKQELDE 276
Score = 27.9 bits (62), Expect = 4.9
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK-KEEKKKKKKKKKKKEKRKK 370
+K+ + + K K +K + K+E + + + E K+
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKR 289
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 31.5 bits (71), Expect = 0.20
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K + R RK +K +R KR R + K
Sbjct: 3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAK 49
Score = 28.5 bits (63), Expect = 2.1
Identities = 11/60 (18%), Positives = 21/60 (35%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
R RK + RK +R + K+ + + K ++ E K+ +K
Sbjct: 10 RAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRK 69
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K R + RK R ++ ++ K+ + R + +K + K+
Sbjct: 5 KPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPN 64
Query: 366 EKRKK 370
+K
Sbjct: 65 SAVRK 69
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 32.2 bits (74), Expect = 0.23
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMD-------LIDVIV--DTEILI 299
E +AK I+ ++ +++D +D + E +
Sbjct: 156 TEIFTQAKARQMIICA--DMIKPRLNETLDDICEALSYVDYLFPNFAEAKL 204
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 30.9 bits (69), Expect = 0.24
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ + KK KK K +KK +K+KK +KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 30.5 bits (68), Expect = 0.34
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ + KK KK K ++K KK+KK +KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.8 bits (66), Expect = 0.64
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K+ KK K +KK KK+K+ ++E
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.4 bits (65), Expect = 0.79
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+ K +K K+ K +K+ KKRKK RK
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.0 bits (64), Expect = 1.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ K KK KK K ++K K++KK RK
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E K KK +K K +K+ KKRKK K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 28.6 bits (63), Expect = 1.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K +K KK K +KK KK+K+ +K
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 28.6 bits (63), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ + KK +K K +KK KK+K+ RK
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 28.2 bits (62), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ K KK KK K ++K ++K+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 28.2 bits (62), Expect = 2.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ K KK K+ K +KK KK++K +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 27.8 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ K KK KK K ++K K++K+ +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.8 bits (61), Expect = 2.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ + K+ KK K ++K +K+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.8 bits (61), Expect = 2.7
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+ + K+ K+ K +KK +K+K+ +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.4 bits (60), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
E K KK KK K +KK +K+++ +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.4 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K KK KK K +KK KK++K +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 27.4 bits (60), Expect = 3.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K KK +K + +++ KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.1 bits (59), Expect = 5.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + KK KK K +K+ +++KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.1 bits (59), Expect = 5.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ + K+ KK + +KK KKRKK ++
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.7 bits (58), Expect = 8.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
+ + KK K+ K ++K KK+K+ +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 9.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
K KK +K + +K+ KK++K +K
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 32.4 bits (74), Expect = 0.25
Identities = 12/75 (16%), Positives = 32/75 (42%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
I + ++ + KK + + +R + E K+ K+ K++ + K +K
Sbjct: 167 IKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIY 226
Query: 357 KKKKKKKKKEKRKKR 371
+ +K ++ + + R
Sbjct: 227 WEIRKDEQGNEYRHR 241
Score = 27.7 bits (62), Expect = 6.9
Identities = 7/75 (9%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK---KKKRKKKRKKKKRKK 347
+ + E + ++ + + ++ + K K+ K++ + + +K
Sbjct: 167 IKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIY 226
Query: 348 KKRKKEEKKKKKKKK 362
+ +K+E+ + + +
Sbjct: 227 WEIRKDEQGNEYRHR 241
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 32.3 bits (73), Expect = 0.25
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK-----KKRKKEEKKK 357
ER R ++ + + EK+ K + + + K+K +K ++K+E K+
Sbjct: 246 IERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQ 305
Query: 358 KKKKKKKKEKRKKR 371
K K + K +
Sbjct: 306 KTKYENKYVGKSAS 319
Score = 30.0 bits (67), Expect = 1.2
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KK++ K+K K + K K+ + E K
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSS 355
Query: 367 K 367
Sbjct: 356 I 356
Score = 27.7 bits (61), Expect = 7.3
Identities = 8/59 (13%), Positives = 16/59 (27%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
++K++ K+K K + K K K + + K
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYS 354
Score = 27.3 bits (60), Expect = 9.3
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+KK++ ++K K + K K K+ + + + K +
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSS 355
Query: 370 K 370
Sbjct: 356 I 356
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 32.1 bits (73), Expect = 0.27
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KKK + + + K+ K +KK+ + K K + E K + + K E
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYE 288
Score = 31.0 bits (70), Expect = 0.60
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKK-KRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KR + + K KK+ K KK++ + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 364 KKEKRKKR 371
K+ K +K+
Sbjct: 249 KETKAEKK 256
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK---RKKKKRKKKKRKKEEKKK 357
KR + KK+ + + KKK + + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 358 KKKKKKKKE 366
K+ K +KKE
Sbjct: 249 KETKAEKKE 257
Score = 29.8 bits (67), Expect = 1.5
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+KK + + K+ K ++K+ K + E + K + + K
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKN 285
Score = 27.9 bits (62), Expect = 6.0
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
KK+ K KKK + + K K ++K+ + K K +
Sbjct: 211 NGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGE 269
Score = 27.1 bits (60), Expect = 8.7
Identities = 10/66 (15%), Positives = 25/66 (37%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++K+ + + ++ K +KK + K K + + K+E + K +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 365 KEKRKK 370
+ K
Sbjct: 291 DDTEVK 296
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 31.7 bits (71), Expect = 0.27
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+++ E+ KK + K K+ KK +++ KK+ + K +KK KK + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRG 163
Score = 31.7 bits (71), Expect = 0.28
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K K+ K+ R+ K+K + K ++K KK + + + + ++ K +
Sbjct: 125 LDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLE 184
Query: 364 KKEKRKKR 371
+ EK+ R
Sbjct: 185 ETEKQAVR 192
Score = 30.6 bits (68), Expect = 0.66
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+++ ++ KK + K KE KK +++ KK+ K ++K KK + + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQ 168
Score = 28.6 bits (63), Expect = 2.6
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E+ ++ + K ++ KK +++ KKK K +KK +K + + + + +
Sbjct: 116 EEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQD 175
Query: 361 KKKKKEK 367
K
Sbjct: 176 VNDKYLL 182
Score = 28.3 bits (62), Expect = 4.0
Identities = 13/77 (16%), Positives = 31/77 (40%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
++E+ E ++ + K K+ K+ ++ KK+ K ++K KK + R
Sbjct: 106 CLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDI 165
Query: 354 EKKKKKKKKKKKEKRKK 370
+ + + +K
Sbjct: 166 QPQLDSALQDVNDKYLL 182
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 31.4 bits (72), Expect = 0.27
Identities = 6/37 (16%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 300 REKRERKRRK-KKKKRKRKRKKRKEKEKKKKKRKKKK 335
+ + R + + ++K + K ++ + R+K+K
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 29.8 bits (68), Expect = 0.84
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ + ++K EEK ++ + ++K++
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 28.7 bits (65), Expect = 2.0
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 315 KRKRKKRK-EKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ + E +KK + K +R + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 28.7 bits (65), Expect = 2.2
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+E+ + +K+ ++K ++ ++KRK
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 28.7 bits (65), Expect = 2.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+++ + KK + K E + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.5 bits (62), Expect = 4.8
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ + + ++K ++K +R + R+K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 7.1
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ + + +KK ++K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 7.7
Identities = 2/35 (5%), Positives = 18/35 (51%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+++ + ++K +++ ++ + ++K++
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 8.0
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
R++ + +KK +++ ++ + ++KRK
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 8.0
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ + +KK +K E+ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.7 bits (60), Expect = 9.6
Identities = 3/35 (8%), Positives = 16/35 (45%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+++ ++K +++ + + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 31.5 bits (71), Expect = 0.29
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K + +KRKEK K ++KK+ + +++ +K +KK K + K
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 31.1 bits (70), Expect = 0.35
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+ + E+K+K++ K +KK++ + +K+ K EKK K + K
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 30.0 bits (67), Expect = 0.95
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V+ ++R K RK + K + ++++K+K K +KKK+ + R
Sbjct: 119 VVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLR 178
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
K+ EK +KK K E K
Sbjct: 179 KQAEKNVEKKIDKYTEVLKT 198
Score = 27.7 bits (61), Expect = 4.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + ++KRK+K + ++KK+ + +K+ +K EK+ +
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDK 191
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 31.7 bits (72), Expect = 0.31
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE-EKKKKKKKKKKKE 366
+++K + + E K K +K E E + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 367 KRKKR 371
K
Sbjct: 252 KNSND 256
Score = 31.7 bits (72), Expect = 0.34
Identities = 11/66 (16%), Positives = 18/66 (27%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+R+K K + + K K KK + + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 365 KEKRKK 370
K K
Sbjct: 252 KNSNDK 257
Score = 30.6 bits (69), Expect = 0.74
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK-RKKKKRKKKKRKKEEKKKKK 359
++R++ K + + K K KK + + K + + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 360 KKKKKKE 366
K K+
Sbjct: 252 KNSNDKD 258
Score = 30.2 bits (68), Expect = 1.1
Identities = 14/61 (22%), Positives = 18/61 (29%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
KK + + K E + K K K K K + K K K K E
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYE 291
Query: 367 K 367
Sbjct: 292 T 292
Score = 29.4 bits (66), Expect = 1.6
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 12/80 (15%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKK------------RKKKKRKKKRKKKKRKKKKR 350
R++ K + + K KK + + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
K K K+K K
Sbjct: 252 KNSNDKDAPDYLKEKCNDNK 271
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/68 (16%), Positives = 16/68 (23%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K K KK + + K + K K K K+
Sbjct: 206 ISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKE 265
Query: 360 KKKKKKEK 367
K K +
Sbjct: 266 KCNDNKCE 273
Score = 28.7 bits (64), Expect = 2.8
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+K + + K + + + K K K K + K + K K +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYE 291
Query: 363 KKKEKRKKR 371
++ K +
Sbjct: 292 TLEDTFKSK 300
Score = 28.3 bits (63), Expect = 3.9
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + K + K + K + K+K K + K K K K E + K
Sbjct: 239 EIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYETLEDTFK 298
Query: 361 KK 362
K
Sbjct: 299 SK 300
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K +K + + K + K K K K+K + + K K + K
Sbjct: 228 KNYILTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWK 287
Query: 370 K 370
Sbjct: 288 N 288
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 32.2 bits (74), Expect = 0.31
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 304 ERKR---RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R R + ++ + + + + ++ + + + K
Sbjct: 715 PRNRVGLSMRMSDTPGEKVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAK 774
Query: 361 KKKKKE 366
+ KKK
Sbjct: 775 QLKKKH 780
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 32.2 bits (73), Expect = 0.31
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + K++ K K++ + E+++K + + KR R
Sbjct: 966 YANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
Score = 31.0 bits (70), Expect = 0.66
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ +++ K ++E E +++RK + + K+ R
Sbjct: 979 DVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
Score = 28.3 bits (63), Expect = 5.7
Identities = 5/47 (10%), Positives = 18/47 (38%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
D ++ + + ++ + E+E+K + + ++ R
Sbjct: 977 DHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel,
cotranslational protein translocation, protein
conducting channel; 6.48A {Triticum aestivum} PDB:
2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C
1s1i_D 3jyw_D
Length = 362
Score = 32.1 bits (72), Expect = 0.32
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 287 DLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
D+ +I +EI + R + +KR KK K K+ R K +K
Sbjct: 285 DVTRIINSSEI---QSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGS 341
Query: 347 KKKRKKEEKKKKKKKKKKKE 366
KK K K + K
Sbjct: 342 KKAEKTGTKPAAVFAETLKH 361
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 31.8 bits (73), Expect = 0.33
Identities = 15/79 (18%), Positives = 40/79 (50%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
ID+I + +R + K+ ++ + RKEK+ + ++ +K R ++R ++
Sbjct: 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLRE 434
Query: 349 KRKKEEKKKKKKKKKKKEK 367
+ + +K K+K+ ++ +
Sbjct: 435 QVEDTKKSWKEKQGQENSE 453
Score = 28.3 bits (64), Expect = 4.6
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE E+K + +K+K + ++ K + E++ +++ + K+ K++
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.4 bits (69), Expect = 0.35
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ + K+ K+E KK K +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.6 bits (67), Expect = 0.62
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + + K+ +K++ KK K E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.2 bits (66), Expect = 0.69
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+ + K+ +K E KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.8 bits (65), Expect = 1.2
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.5 bits (64), Expect = 1.6
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
++ + K+ +K+ KK + E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.1 bits (63), Expect = 1.8
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K+ + + K+ ++ + KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.1 bits (63), Expect = 2.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+ + + KR E+++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.7 bits (62), Expect = 2.3
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ + + K+ +K++ KK K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.7 bits (62), Expect = 2.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
K+ + + K+ +KR+ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 26.9 bits (60), Expect = 4.6
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ + + K+ +K++ K+ +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 26.9 bits (60), Expect = 4.7
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++ + + KR ++++ K+ K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 5.9
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ E + K+ +K+ KK + +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 6.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K + E K+ K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 7.9
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+ + + K +K+ KK K +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 26.1 bits (58), Expect = 8.2
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRK 332
I ++ + + K+ +++E +K K
Sbjct: 78 ILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 30.5 bits (68), Expect = 0.37
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ +K+ K+ K + K+ KKK K K K+K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 30.1 bits (67), Expect = 0.60
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K+ +K+ K+ K + KK KKK K K + K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.8 bits (66), Expect = 0.67
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K+ +KK ++ K + KK +KK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.8 bits (66), Expect = 0.71
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ +KK K K + +K KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.0 bits (64), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
K+ +KK KE K + KK +KK K K + K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 28.2 bits (62), Expect = 2.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K+ +KK ++ + + +K +KK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 28.2 bits (62), Expect = 2.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ +KK ++ + + KK KKK K + + K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.8 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K+ +KK K+ K + KK KK+ K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.8 bits (61), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K+ +KK K K + +K K+K K K ++K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.8 bits (61), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K+ +K+ ++ K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.4 bits (60), Expect = 4.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K+ +KK K+ K + K+ KK+ K + K++
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.4 bits (60), Expect = 4.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ ++K K+ + + KK KKK K K +
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 26.7 bits (58), Expect = 7.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++ +K+ ++ + + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.7 bits (58), Expect = 7.7
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
++ +KK K + + +K K+K + K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.2 bits (70), Expect = 0.38
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKR 321
AF K M+L ++ D + E RK + K K+ + +KR
Sbjct: 33 AFDKHMNL--ILCDCD----E--FRKIKPKNSKQAEREEKR 65
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.4 bits (68), Expect = 0.38
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K K K+ K +K K KKKK+K+KE
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.1 bits (67), Expect = 0.42
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ K KK + +K K KKKKRK++E
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 29.7 bits (66), Expect = 0.68
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
K K KK + +K K KKKKRK+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 29.7 bits (66), Expect = 0.72
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ K K+ K +K K K+KK+KRK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.9 bits (64), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K KK + +K K +KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.5 bits (63), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K K KK K +K + KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.1 bits (62), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+ K +K K +K + K+KK+KRK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.1 bits (62), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K K K+ K +K + KK+K+KRK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.1 bits (62), Expect = 2.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ + KK K +K K KKK++K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.7 bits (61), Expect = 2.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K + KK K +K + KK+K++ K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K + KK K +K K KKKK KRK
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
K K +K K ++ K KKKKRK+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.4 bits (60), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
K K +K K ++ K K+KK+KRK
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.0 bits (59), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K K K+ K +K K +KKKRK+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.0 bits (59), Expect = 5.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K KK + ++ K KKKK+K K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.0 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K KK K +K K K+K++KR
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 26.6 bits (58), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKK 334
K K K+ K +K K KKKKRK+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 7.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+ K K+ K +K K KK+K+K++
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 7.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ K +K K +K K KKK++K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 26.2 bits (57), Expect = 9.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K KK K ++ K K++K+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 31.7 bits (72), Expect = 0.38
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 272 SFHHVNLRDAFAKSMDLIDVIVDTEILIRE---KRERKRRKKKKKRKRKRKKRKEKEKKK 328
+F VNL++ F S DL D L R+ + K + K KRK
Sbjct: 445 TFWEVNLKEKF--SADL-----DQFPLGRKFLLQLGLKAKPKFTLGKRKATPTTSSTSTT 497
Query: 329 KKRKKKK 335
KRKK+K
Sbjct: 498 AKRKKRK 504
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 31.5 bits (70), Expect = 0.39
Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 247 NQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK 306
M K + A E +R + ++ A+ M+ + K +
Sbjct: 114 AAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAE 173
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKR----KKKRKKKKRKKKKRKKEEKKKKKKKK 362
+R+ +++ ++ + K K K ++ K+ R+ +R +E+ K ++ +
Sbjct: 174 KREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVR 233
Query: 363 KKKEKRK 369
K KE ++
Sbjct: 234 KNKELKE 240
Score = 31.1 bits (69), Expect = 0.43
Identities = 13/72 (18%), Positives = 35/72 (48%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+EK +K K+ R+ E+ ++K K ++ R++ ++ K K++ +K +
Sbjct: 95 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKME 154
Query: 360 KKKKKKEKRKKR 371
K+ ++ ++
Sbjct: 155 SNKENRKYQEAE 166
Score = 30.7 bits (68), Expect = 0.60
Identities = 12/72 (16%), Positives = 30/72 (41%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K RK ++ + + K+ E+E ++ ++ K K+K +K +E ++
Sbjct: 155 SNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAH 214
Query: 360 KKKKKKEKRKKR 371
+ ++K
Sbjct: 215 FAAMLERLQEKD 226
Score = 30.7 bits (68), Expect = 0.67
Identities = 12/72 (16%), Positives = 33/72 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
E ++K + +R++ + E K ++++ +R+ ++ + K ++K +
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQ 100
Query: 360 KKKKKKEKRKKR 371
K + KE R+
Sbjct: 101 KMESNKENREAH 112
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.2 bits (70), Expect = 0.41
Identities = 10/94 (10%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+ + + + L + E +++ + +K+ + K +E + K
Sbjct: 47 AILNLEEEKLALKLQVSKNEQTLQDTNAK--IASIQKKMSEIKSERELRSLNIEEDIAKE 104
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + ++ + + + + K +K++ KK+ +
Sbjct: 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 31.5 bits (71), Expect = 0.42
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
++ KK R KEEKK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 31.0 bits (71), Expect = 0.43
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KR+ + + + + +KE + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 30.6 bits (70), Expect = 0.60
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
K++ + + + + +++ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 29.1 bits (66), Expect = 1.8
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
KR+ + + + + +K + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.3 bits (64), Expect = 3.5
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K++ + R + + +K+ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 3.7
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
KR+ + + + +K+ R K +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 286 MDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKK 330
+D +D I+ E L + KRE + + R +K+ + K+ +
Sbjct: 147 IDHLDGILFFERLPKPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 6.3
Identities = 2/29 (6%), Positives = 13/29 (44%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++ + + + + +++ K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 6.3
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
K+ E + + + +++ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 7.5
Identities = 2/29 (6%), Positives = 14/29 (48%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K++ + + + + +++ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 7.8
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K++ + + + + +K + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 8.1
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
KR+ + + + +K+ R ++ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 8.7
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K++ + R + + +K + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 8.8
Identities = 2/29 (6%), Positives = 13/29 (44%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
+++ + + + + +K + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_L
Length = 199
Score = 30.8 bits (69), Expect = 0.44
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + + ++ + + + R +K+ + R+K+ R+K E + +KKK
Sbjct: 148 AQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIREKRAREKAEAEAEKKK 199
Score = 28.9 bits (64), Expect = 1.9
Identities = 8/75 (10%), Positives = 29/75 (38%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ R + + + + + + + + R + + +K+ + ++
Sbjct: 125 VFPRNGKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIRE 184
Query: 357 KKKKKKKKKEKRKKR 371
K+ ++K + E KK+
Sbjct: 185 KRAREKAEAEAEKKK 199
Score = 28.5 bits (63), Expect = 2.6
Identities = 7/65 (10%), Positives = 23/65 (35%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+R K+ + K R K + ++ + + R ++ + + +
Sbjct: 114 QRLKEYQSKIIVFPRNGKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLA 173
Query: 367 KRKKR 371
+ +K+
Sbjct: 174 RSEKK 178
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 31.1 bits (70), Expect = 0.44
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K + KRK + KK+ KK + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 30.3 bits (68), Expect = 0.68
Identities = 9/49 (18%), Positives = 14/49 (28%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K + KRK + KK+ KK ++
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 30.3 bits (68), Expect = 0.81
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K + K + K+K + KK+ KK E K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.8 bits (64), Expect = 2.3
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K + + + KRK + KK+ K+ + ++
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.4 bits (63), Expect = 3.4
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K + K + K+K + K++ +K + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 31.1 bits (70), Expect = 0.45
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+E E+K+K++ K ++++ K + K K E+K + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 30.7 bits (69), Expect = 0.62
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ +KRKEK K R+K+ K + K +K ++K + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 29.9 bits (67), Expect = 0.87
Identities = 16/80 (20%), Positives = 35/80 (43%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
VI D ++R + + + K + ++ ++++K+K K ++K+ K R
Sbjct: 124 VIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLR 183
Query: 351 KKEEKKKKKKKKKKKEKRKK 370
K EK ++K + E
Sbjct: 184 VKAEKAAEEKLGTQLEILAP 203
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 30.9 bits (69), Expect = 0.47
Identities = 7/63 (11%), Positives = 26/63 (41%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K + ++++ + + K +++ + RK R+ +K++K ++
Sbjct: 147 ENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEEC 206
Query: 365 KEK 367
+
Sbjct: 207 LQH 209
Score = 30.9 bits (69), Expect = 0.53
Identities = 13/70 (18%), Positives = 32/70 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + ++K K K K + EK+ + K+ + + + + +++ E +K
Sbjct: 132 EAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLL 191
Query: 361 KKKKKEKRKK 370
++ K++RK
Sbjct: 192 RRTIKKQRKY 201
Score = 30.5 bits (68), Expect = 0.57
Identities = 11/73 (15%), Positives = 31/73 (42%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
++ + ++K K ++ K +K+ + K + R + K + + E +K
Sbjct: 129 RFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRK 188
Query: 359 KKKKKKKEKRKKR 371
++ +K++K
Sbjct: 189 DLLRRTIKKQRKY 201
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 31.4 bits (70), Expect = 0.53
Identities = 9/61 (14%), Positives = 27/61 (44%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
L+D ++D + + + + +KK + + + E KK + +++ + + +K
Sbjct: 325 LVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDAL 384
Query: 348 K 348
Sbjct: 385 D 385
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 31.1 bits (71), Expect = 0.53
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMD 287
E R + G V F VNLR + D
Sbjct: 162 LEGARRMREAGGYVLF-DVNLRSKMWGNTD 190
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 31.2 bits (70), Expect = 0.53
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ + I+ + + +K E R ++ K+K + E KK++ +
Sbjct: 239 KENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYE 298
Query: 340 RKKKKRKKKKRKKEEK 355
KK K ++EE
Sbjct: 299 DDDYVSKKSKHEEEEW 314
Score = 30.8 bits (69), Expect = 0.69
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 315 KRKRKKRKEKEKK-KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+ R E+ K+K + + KK+K +++ KK K ++E+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
Score = 30.4 bits (68), Expect = 0.95
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K + + +E K+K + KKRK E KK K E+ +
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 31.5 bits (71), Expect = 0.55
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK++E K+ K+ ++ ++ K K + + KK +K +
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDE 582
Score = 29.2 bits (65), Expect = 2.3
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRK----KKKRKKKRKKKKRKKKKRKKEEKKKK 358
ER R K K K K E +K+ + + + + K+ + ++ K+
Sbjct: 189 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKE 248
Query: 359 KKKKKKKEKRKKR 371
+ + + +
Sbjct: 249 NAENYLIKISENK 261
Score = 29.2 bits (65), Expect = 2.3
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK--KRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + K + + K K E KRK K+ +KK++ K+ ++ +E +K K
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 364 KKEKRKKR 371
E + +
Sbjct: 555 YSEFKSIK 562
Score = 28.8 bits (64), Expect = 3.6
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KKK+ K+ K+ ++ +K K K K + KK +K + + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 369 K 369
Sbjct: 590 D 590
Score = 27.6 bits (61), Expect = 7.1
Identities = 8/65 (12%), Positives = 29/65 (44%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+KK++ K+ ++ ++ ++ K + + K + +K ++ + + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 367 KRKKR 371
K +
Sbjct: 590 DYKNK 594
Score = 27.6 bits (61), Expect = 7.5
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKE------------KKKKKRKKKKRKKKRKKKKRKKKKR 350
+++ + + K + K K ++ KKK+ K+ K+ ++ +K K
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 351 KKEEKKKKKKKKKKKEKRK 369
E K K + KK K
Sbjct: 555 YSEFKSIKPEVYLKKYSEK 573
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 30.6 bits (68), Expect = 0.56
Identities = 0/50 (0%), Positives = 0/50 (0%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG 51
Score = 28.3 bits (62), Expect = 3.1
Identities = 0/42 (0%), Positives = 0/42 (0%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 43
Score = 28.3 bits (62), Expect = 3.1
Identities = 0/50 (0%), Positives = 0/50 (0%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG 51
Score = 27.9 bits (61), Expect = 4.1
Identities = 0/35 (0%), Positives = 0/35 (0%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 36
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 30.9 bits (69), Expect = 0.57
Identities = 12/68 (17%), Positives = 30/68 (44%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+R + K +K K + + E+ KK+ + +++KK+ K ++ + + K
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 364 KKEKRKKR 371
+ + K
Sbjct: 75 EHKTTKMS 82
Score = 28.2 bits (62), Expect = 4.8
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 300 REKRERKRR----------KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+EK +K + KK+ + + KK++ + + ++ + K+ K
Sbjct: 18 KEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHK 77
Query: 350 RKKEEKKKKKKKKKKKEKRKK 370
K K +K K K
Sbjct: 78 TTKMSNKSNEKSGNVLPKDKP 98
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex,
PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM
site, SM fold, heteromeric heptameric ring; 3.60A {Homo
sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Length = 126
Score = 30.0 bits (67), Expect = 0.57
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 266 REGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERK-----RRKKKKKRKRKRKK 320
R+G + V +R + + + L D++ + +L K + + R K + + +
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAAR 110
Query: 321 RKEKEKKKKKRKKKKR 336
+ + + +K+R
Sbjct: 111 GRGRGMGRGNIFQKRR 126
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 29.8 bits (66), Expect = 0.62
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK--KKRKKEEKKKKKKK 361
++ R K K +K EK + + +++ + +K+K + +K +
Sbjct: 63 DKNRLALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTA 122
Query: 362 KKKKEKR 368
+KE
Sbjct: 123 ALEKESG 129
Score = 29.8 bits (66), Expect = 0.76
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L + ++ ++ +K ++ + K + +KRK + +K EK+
Sbjct: 69 LTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKES 128
Query: 358 K 358
Sbjct: 129 G 129
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 31.2 bits (71), Expect = 0.66
Identities = 2/42 (4%), Positives = 19/42 (45%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+E +++++ R + +++ + +++++ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 28.9 bits (65), Expect = 3.4
Identities = 6/43 (13%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 303 RERKRRKKKK-KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
R ++ R+++K R E ++++ K +++ + +
Sbjct: 727 RFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 31.0 bits (69), Expect = 0.67
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 168 LQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMT 227
L++ L + + A+G ++ F+++G +T
Sbjct: 73 LRAHPCVSDQELGLL-IKEVADALGGGADPETQSTSQSSHSAWDL---GSAFFFSGTIIT 128
Query: 228 TVGYGDICPTTPLGKMI 244
T+GYG++ T G++
Sbjct: 129 TIGYGNVALRTDAGRLF 145
Score = 29.4 bits (65), Expect = 1.8
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 140 FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 199
V + I I + L L L +LF+ +F +
Sbjct: 161 LAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYM 220
Query: 200 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGK 242
D + E ++ +T+TTVG+GD +
Sbjct: 221 --------EDWSKL---EAIYFVIVTLTTVGFGDYVAGADPRQ 252
>3pfy_A OTU domain-containing protein 5; structural genomics, structural
genomics consortium, SGC, PE C65 otubain, hydrolase;
HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Length = 185
Score = 30.1 bits (67), Expect = 0.69
Identities = 6/67 (8%), Positives = 16/67 (23%), Gaps = 5/67 (7%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + + + R + ++E +K + K
Sbjct: 2 HHHHHHSSGRENLYFQG-----AGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDK 56
Query: 364 KKEKRKK 370
K K+
Sbjct: 57 KGFIIKQ 63
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 30.7 bits (70), Expect = 0.70
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLR 279
R+ M+ + G VSF NLR
Sbjct: 174 RKTMDLMRAAGRSVSF-DPNLR 194
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 29.2 bits (65), Expect = 0.71
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+++ K K ++ KKK KK K++
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.2 bits (65), Expect = 0.83
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K++ K K KK +KK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.2 bits (65), Expect = 0.86
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.4 bits (63), Expect = 1.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K++ K K K+ KKK KK K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 28.1 bits (62), Expect = 1.7
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K++ K + KK KKK KK K + + ++K + KE
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKE 53
Score = 28.1 bits (62), Expect = 2.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K++ K K K+ KKK K+ K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.7 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ K K KK KKK KK + +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.7 bits (61), Expect = 2.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+++ K K KK KKK KK + +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.7 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K++ K K KK +KK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.9 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.5 bits (58), Expect = 6.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+++ + K KK +KK KK + +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.5 bits (58), Expect = 7.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K++ K + KK KKK K+ +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 30.7 bits (70), Expect = 0.73
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+K R ++ R +K K +
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMKAA 260
Score = 30.3 bits (69), Expect = 0.78
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+K R +R R +K K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 28.7 bits (65), Expect = 2.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
+K R +R +K+K K
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 27.6 bits (62), Expect = 7.0
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+K + +R + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 27.6 bits (62), Expect = 7.1
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K R ++ +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X*
3s6n_A
Length = 119
Score = 29.6 bits (66), Expect = 0.75
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 266 REGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK--KKRKRKRKKRKE 323
+ V +++R + L D + +L+ + + K +K++ R R R + +
Sbjct: 48 KNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRG 107
Query: 324 KEKKKKK 330
+ + + +
Sbjct: 108 RGRGRGR 114
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 30.3 bits (68), Expect = 0.80
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
V+VD + R + R K ++ +K +++++ + K KK ++ R
Sbjct: 118 VVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADAR 177
Query: 351 KKEEKKKKKKKKKKK 365
KKE K K K
Sbjct: 178 KKELAAPALKAIKDK 192
Score = 28.4 bits (63), Expect = 3.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
EK ++KR+ + + KK K+ ++K+ K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 27.6 bits (61), Expect = 4.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ E+K++ R K KK K+ +KK+ K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 27.2 bits (60), Expect = 6.3
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ + K + + K KK ++ +KK+ K + K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 30.6 bits (70), Expect = 0.81
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 258 REAMERAKREGSIVSFHHVNLR----------DAFAKSMDLIDVIVDTE 296
AME AKR G VS VN R +++ +D++ +E
Sbjct: 147 LWAMEEAKRRGVRVSL-DVNYRQTLWSPEEARGFLERALPGVDLLFLSE 194
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 30.5 bits (68), Expect = 0.88
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ ++ R + + KKK K K + KK+ + + +K KK + + +
Sbjct: 110 LSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIR 169
Query: 353 EEKKKKKKKKKKKEKRK 369
+ K K+KK E +
Sbjct: 170 KMKGLKQKKAHLMEIQV 186
Score = 29.0 bits (64), Expect = 2.4
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R++ K K KK+ + K +K+ + + ++ KK + +K K
Sbjct: 115 RRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGL 174
Query: 368 RKKR 371
++K+
Sbjct: 175 KQKK 178
Score = 27.8 bits (61), Expect = 5.6
Identities = 17/77 (22%), Positives = 30/77 (38%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ + E RR+ K + +KK K K K++ + + +K KK
Sbjct: 103 NSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRV 162
Query: 355 KKKKKKKKKKKEKRKKR 371
+ +K K K+KK
Sbjct: 163 IAHTQIRKMKGLKQKKA 179
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 28.9 bits (65), Expect = 0.91
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
EK+K K + ++ K++ ++ + ++ + + KK +
Sbjct: 54 EKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKLEHHHHH 98
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 30.6 bits (68), Expect = 0.97
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRK-----------EKE 325
+ + + S+ + + E R ++ + K K E+E
Sbjct: 338 TILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEE 397
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K KK K +KKK KK RK +K+ + KK
Sbjct: 398 KAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKM 435
Score = 30.2 bits (67), Expect = 1.1
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK---------KRKKKKRKKKKR 350
+ + R+ ++ ++R+++ K K K + K KK
Sbjct: 348 KNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKP 407
Query: 351 KKEEKKKKKKKKKKKEKRKKR 371
+ +KKK KK ++ ++
Sbjct: 408 SPSKARKKKLNKKGRKMAGRK 428
Score = 27.5 bits (60), Expect = 7.2
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKR----------KKKKRKKKRKKKKRKKKK 349
E+ +RR++++ + K E K ++K KK K +
Sbjct: 354 EEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKAR 413
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
+KK KK +K +K+ + KK
Sbjct: 414 KKKLNKKGRKMAGRKRGRPKKM 435
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 30.2 bits (67), Expect = 0.99
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
+++ + K+ + R + K ++ +K KK++K +E
Sbjct: 188 EKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 29.8 bits (66), Expect = 1.1
Identities = 13/70 (18%), Positives = 32/70 (45%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + ++K K K K + EK+ + K+ + + + + +++ E +K
Sbjct: 164 EAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLL 223
Query: 361 KKKKKEKRKK 370
++ K++RK
Sbjct: 224 RRTIKKQRKY 233
Score = 28.3 bits (62), Expect = 3.5
Identities = 7/51 (13%), Positives = 24/51 (47%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K + ++++ + + K +++ + RK R+ +K++K ++
Sbjct: 187 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 27.5 bits (60), Expect = 6.2
Identities = 5/51 (9%), Positives = 24/51 (47%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+K+ + K+ + + + K +++ + +K ++ +K+ + ++
Sbjct: 187 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 27.5 bits (60), Expect = 6.7
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K + ++ + + E + +++ + RK ++ +K++K EE
Sbjct: 187 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 27.1 bits (59), Expect = 8.2
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++ + ++ + R E K + + + +K ++ KK+RK ++
Sbjct: 187 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 30.6 bits (69), Expect = 1.0
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + K++ K K++ + E+++K + + KR R
Sbjct: 963 YANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1020
Score = 29.5 bits (66), Expect = 2.3
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ +++ K ++E E +++RK + + K+ R
Sbjct: 976 DVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1020
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 30.3 bits (69), Expect = 1.0
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAF 282
A+ +A+ G ++F NLR
Sbjct: 168 LRALAQARATGRTIAF-DPNLRPRL 191
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 195
Score = 29.7 bits (67), Expect = 1.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKK 338
FAK + VD+ LI + + + + + + + + K +K
Sbjct: 130 QDFAKQQGV--ETVDSSHLITAENVERLKLAIEANRVQVDYSQYNYPEPVKDDAEKELP 186
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic
dysentery, ssgcid, NI infectious disease, structural
genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Length = 365
Score = 30.0 bits (68), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 60 DKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKG-GLN-VIDLLA 111
K G PI++PK E + YL LG S E KG L+ +++++
Sbjct: 209 MKGGKPIEDPK----ELLENYPKGKAYLHPLGGSDEVSGSHKGYCLSEFVEIMS 258
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 29.2 bits (65), Expect = 1.1
Identities = 3/42 (7%), Positives = 14/42 (33%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
R+R++ + + + + + + K ++
Sbjct: 4 TSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTACRKH 45
Score = 28.1 bits (62), Expect = 3.0
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
++R++ R + + + + K +K
Sbjct: 4 TSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTACRKH 45
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 28.9 bits (65), Expect = 1.2
Identities = 4/45 (8%), Positives = 18/45 (40%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K + K K +++ ++ + E ++++++
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
Score = 27.7 bits (62), Expect = 3.0
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K + K K ++++R+ + + E+++++
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
Score = 26.2 bits (58), Expect = 9.7
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ K + K K +R++++ + + +EE+++
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 29.2 bits (64), Expect = 1.2
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + + + R K+ +E EK K+ + +++ + K K+ ++ +E +
Sbjct: 32 KDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDR 91
Query: 361 KKKKKEKRKKR 371
++ +KE +K+
Sbjct: 92 QRLEKELEEKK 102
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 29.9 bits (68), Expect = 1.2
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLR 279
+ + +G V F N R
Sbjct: 152 LSLLRECRAKGGKVIF-DNNYR 172
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.8 bits (64), Expect = 1.2
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
++ + ++ +++EKE+ K K+ ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 28.1 bits (62), Expect = 1.8
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ + + ++ ++EEK++ K K ++
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRC 111
Score = 28.1 bits (62), Expect = 2.2
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ + + + R++E+++ K K+ R+ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 27.7 bits (61), Expect = 2.4
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K+ +++ ++ ++ +K+R K K+ + +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 27.7 bits (61), Expect = 2.4
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
+ + + ++ R++ KE+ K K+ R+ +
Sbjct: 75 QLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 27.7 bits (61), Expect = 2.9
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K+ + +E ++++K+R + KR ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 27.7 bits (61), Expect = 3.0
Identities = 4/39 (10%), Positives = 19/39 (48%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++ + + ++ +++EK++ K ++ R+ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 26.9 bits (59), Expect = 5.3
Identities = 4/39 (10%), Positives = 16/39 (41%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
++ E + ++ ++++K + + KR +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 26.9 bits (59), Expect = 5.8
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ + + ++ ++++K+R K + ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
Score = 26.1 bits (57), Expect = 9.9
Identities = 4/39 (10%), Positives = 19/39 (48%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
K+ + + ++ +++++++ K K+ R+ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 29.4 bits (67), Expect = 1.2
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKK 328
KR++ ++ K+ +K+++ K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 29.0 bits (66), Expect = 1.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKK 365
KRKK +++ K+ +K++K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 28.6 bits (65), Expect = 2.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K+K+ +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K+K+ +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.5 bits (62), Expect = 5.5
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+K+ +K+ K+ ++K++ K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMD 287
+A A+ +G IV F R D
Sbjct: 165 IKAFNYAREQGKIVCF-DPCYRKVLWPEGD 193
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 293 VDTEILIREKRERKRRKK-KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
V E KR+ K+ +K K K + K++ ++ +
Sbjct: 17 VVPEFQCAVKRKEKKAQKDKDKPNSTTSCSPDGIKQEIDPQRLDTDSQLLS 67
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 30.3 bits (67), Expect = 1.3
Identities = 26/233 (11%), Positives = 57/233 (24%), Gaps = 9/233 (3%)
Query: 139 QFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 198
V RV+Q+ + + + + +Q + + +I
Sbjct: 324 NIIAVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKEQNKVIPQG 383
Query: 199 LAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRR 258
++ + IP + + + + + P+ + N A +
Sbjct: 384 RSHPVQPYPGAFVKEPIPNRYKY----VMSFDLTSLYPSI----IRQVNISPETIAGTFK 435
Query: 259 EAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKR 318
A V V + + +RK K +R
Sbjct: 436 VAPLHDYINAVAERPSDVYSCSPNGMMYYKDRDGVVPTEITKVFNQRKEHKGYMLAA-QR 494
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE + + K++ KK K + R +R
Sbjct: 495 NGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQR 547
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 249 MRREKALKRREAMERAKREGSIV-----SFHHVNLRDAFAKSMDLIDVIVDTEILIREKR 303
+ + E K+ G+ S N++ F + I+
Sbjct: 133 ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-------------DTAIKVVL 179
Query: 304 ERKRRKKKKKRKRKRKKRK 322
+ RRK+ +R++ ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 28.9 bits (64), Expect = 1.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK-KKKRKKKKRKKEEKKKK 358
RE +K ++ K KEK +K + K+ R+ +R ++K K E+ +K
Sbjct: 74 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 133
Query: 359 KKKKKKKEKR 368
K+ K++ R
Sbjct: 134 NKELKEEASR 143
Score = 28.9 bits (64), Expect = 1.4
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+KK + ++RK +E + K +KR+ +R+ ++ ++ K K+K +K E K+
Sbjct: 49 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE 108
Score = 28.5 bits (63), Expect = 1.9
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
EI + + +RRK ++ K K + +++ +K + K ++K +K E
Sbjct: 47 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 106
Query: 356 KKKKKKKKKKEKRKKR 371
K+ ++ + +
Sbjct: 107 KENREAHLAAMLERLQ 122
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/68 (19%), Positives = 32/68 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ R+ +K + + K+K +K + K+ R+ +R +E+ K ++
Sbjct: 72 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV 131
Query: 362 KKKKEKRK 369
+K KE ++
Sbjct: 132 RKNKELKE 139
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 29.2 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K K RK+ + E + K K +K+R+++ + KK + K +E++ KK
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK 196
Score = 29.2 bits (65), Expect = 1.6
Identities = 13/54 (24%), Positives = 32/54 (59%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K K ++K ++ + ++ + K+ RK++ ++ + KK++ K K+++ KK
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK 196
Score = 28.9 bits (64), Expect = 1.9
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ KR K K + RKK + + ++ K K+ +K+R+++ + KK+ + K++
Sbjct: 133 KNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEE 192
Query: 360 KKKK 363
+ KK
Sbjct: 193 ETKK 196
Score = 28.1 bits (62), Expect = 3.3
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + +K +KK + + ++ + K+ RK+++ + + KK++ K KE+ K+
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK 196
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 29.8 bits (66), Expect = 1.5
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
L A A S + + T + K + ++ +R++ E + K KR
Sbjct: 8 ELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQ--KSKRLDYVN 65
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+R + +EE KK ++ +K
Sbjct: 66 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLP 100
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 28.9 bits (63), Expect = 1.5
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+K + K R +
Sbjct: 107 IAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 28.9 bits (63), Expect = 1.6
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
+R R ++ K++ E K + +
Sbjct: 96 YDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.8 bits (60), Expect = 3.8
Identities = 2/36 (5%), Positives = 9/36 (25%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++ K++ + K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.0 bits (58), Expect = 5.5
Identities = 4/36 (11%), Positives = 9/36 (25%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ KKR + K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.0 bits (58), Expect = 5.7
Identities = 2/36 (5%), Positives = 8/36 (22%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ K++ K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVD 294
+EA+ +A S SF N+R + + I+
Sbjct: 146 KEAVYKAFEIASNRSF-DTNIRLKLWSAEEAKREILK 181
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.1 bits (65), Expect = 1.6
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
EKE+ K +KK + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 27.2 bits (60), Expect = 6.5
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 343 KKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K+ K +++ + +++ + +KR
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.9 bits (68), Expect = 1.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKK--KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ + R K K+ R R +R + + K+++K + + K + K+ + E + ++ K
Sbjct: 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK 96
Query: 362 KKKKE 366
KK
Sbjct: 97 KKIDY 101
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K RK+ +KR +K +K +K K K
Sbjct: 27 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKT 70
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 29.1 bits (65), Expect = 1.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
KE+ K + + ++KK +KK +K+K +E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.2 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K++ K + + +KKK +KK KK+K R
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.7 bits (67), Expect = 1.7
Identities = 12/103 (11%), Positives = 33/103 (32%)
Query: 269 SIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKK 328
++ F + D ++ + V + E RE + K++ K+ ++
Sbjct: 125 QVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEE 184
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++ + R + + KK++ R
Sbjct: 185 VVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPL 227
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 28.7 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K KK K ++ + K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 28.3 bits (63), Expect = 2.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K KK K ++ K K + K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K K+ K ++ K K K K+K +K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 6.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K KK K ++ K K + K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.8 bits (59), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K +K K ++ K K K K++ KK R
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTS 39
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 27.8 bits (61), Expect = 1.9
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 331 RKKKKRKKKRKKKKRKK 347
++ ++ K K++KR+K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 2.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 325 EKKKKKRKKKKRKKKRK 341
++ +R K KR+K+RK
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.0 bits (59), Expect = 3.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 321 RKEKEKKKKKRKKKKRKK 338
KE ++ K K++KR+K
Sbjct: 73 CKEIANQRSKSKRQKRRK 90
Score = 27.0 bits (59), Expect = 3.2
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 336 RKKKRKKKKRKKKKRKK 352
++ ++ K K++KR+K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere,
CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Length = 156
Score = 28.8 bits (63), Expect = 1.9
Identities = 5/58 (8%), Positives = 22/58 (37%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
++ R++ +K + R++ ++ + ++++ +E +K
Sbjct: 12 QDPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRK 69
Score = 28.4 bits (62), Expect = 2.5
Identities = 2/54 (3%), Positives = 13/54 (24%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ +R+ ++ + R++ ++ +
Sbjct: 3 SSHHHHHHSQDPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQH 56
Score = 26.9 bits (58), Expect = 8.8
Identities = 1/56 (1%), Positives = 14/56 (25%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ +R+ ++ + + ++ + ++ +
Sbjct: 7 HHHHSQDPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQG 62
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 29.8 bits (66), Expect = 1.9
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 13/75 (17%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRK-------------KKKRKKKRKKKKRKKKKRKKEE 354
RK K ++ +K +EK+ K +K +
Sbjct: 457 RKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHR 516
Query: 355 KKKKKKKKKKKEKRK 369
K K
Sbjct: 517 VIKNNGDGTVDVAIK 531
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 29.3 bits (66), Expect = 2.0
Identities = 6/57 (10%), Positives = 25/57 (43%)
Query: 288 LIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
+D I + L ++ + KK+ ++ + + ++ + K+ ++ +++
Sbjct: 4 QVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQRE 60
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 29.5 bits (67), Expect = 2.0
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAF 282
+A+ AKR V F ++ R
Sbjct: 159 LKAIRLAKRNDVKVVF-ELDYRPYS 182
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 29.6 bits (65), Expect = 2.1
Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 246 SNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRER 305
+ + E+A V + ++ +D + + I ++ R
Sbjct: 318 AAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNR 377
Query: 306 -----------KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
+ K +R + K+ K+K + RKK+E
Sbjct: 378 FAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDAD-AALSSAMESRKKKE 436
Query: 355 KKKKKKKKKKKEKRKKR 371
KK+ + +++ K
Sbjct: 437 DKKRSAENNLNDEKNKP 453
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function,
ribonucleoprotein, PSI-2, protein structure initiative;
NMR {Sulfolobus solfataricus P2}
Length = 133
Score = 28.3 bits (63), Expect = 2.2
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 13/69 (18%)
Query: 306 KRRKKKKKRKRKRKKRK-------------EKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
R+ + + R KRK ++ + K R K R K
Sbjct: 9 NRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDP 68
Query: 353 EEKKKKKKK 361
KK K
Sbjct: 69 ATNTAKKVK 77
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold,
centromere, DNA binding protein; 2.50A {Homo sapiens}
PDB: 3an2_A
Length = 140
Score = 28.3 bits (62), Expect = 2.3
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+RR +K + R+R +R + +R++ K+
Sbjct: 3 PRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKE 50
Score = 27.2 bits (59), Expect = 4.8
Identities = 5/51 (9%), Positives = 20/51 (39%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R++ +K + R++ ++ + ++++ +E +K
Sbjct: 3 PRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRK 53
Score = 26.4 bits (57), Expect = 9.8
Identities = 5/44 (11%), Positives = 15/44 (34%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRK 346
R+ RK + R+R ++ + ++++
Sbjct: 3 PRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQG 46
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 28.9 bits (65), Expect = 2.3
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
R + K K+KK KR
Sbjct: 3 SSHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
Score = 27.7 bits (62), Expect = 5.4
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ + K K+KK KR
Sbjct: 3 SSHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
Score = 27.7 bits (62), Expect = 5.5
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ + + K+KK KR
Sbjct: 4 SHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
Score = 27.7 bits (62), Expect = 5.6
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKR 331
+ + K +KKK KR
Sbjct: 4 SHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 51 NTIPSLQHKDKAGNPIDN-PKLAI---VE 75
+ LQ K D+ P LAI +E
Sbjct: 20 QALKKLQASLKLYAD-DSAPALAIKATME 47
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 144
Score = 28.5 bits (63), Expect = 2.3
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+K+ + + K + KK K K K+K
Sbjct: 110 RKRFAGLSEIMEIPVLKGEIIMPTKKSKGPKGKKK 144
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 28.7 bits (65), Expect = 2.4
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+KK + K + ++ K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.9 bits (63), Expect = 4.2
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKK 328
+++ R K + + + +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.9 bits (63), Expect = 4.6
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKK 363
KK+ + K + R + +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.1 bits (61), Expect = 7.0
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK+ + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+K + K + + + +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 29.2 bits (65), Expect = 2.4
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR 336
R ++ K +++
Sbjct: 3 HHHHHSSGLVPRGSGMKETAAAKFERQHMDSP 34
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 27.4 bits (61), Expect = 2.4
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K E+EK K + K K ++ + ++ +++ + K
Sbjct: 47 KTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSGPS 90
Score = 27.0 bits (60), Expect = 3.3
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E+K K +K + +R + K+ ++ + K
Sbjct: 52 EEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSGPS 90
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 28.0 bits (62), Expect = 2.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K K K +R+ K + + K++ KE+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 28.5 bits (63), Expect = 2.5
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K+ + + R E K+K R K+K + R K +++ ++ +K +
Sbjct: 51 MKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYR 110
Query: 368 RKKR 371
K+
Sbjct: 111 AAKK 114
Score = 26.9 bits (59), Expect = 7.9
Identities = 12/81 (14%), Positives = 25/81 (30%)
Query: 291 VIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR 350
+ +D R +K K ++ + R + + KRK + KR
Sbjct: 22 LWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKR 81
Query: 351 KKEEKKKKKKKKKKKEKRKKR 371
K + K +++
Sbjct: 82 KGTRNARMPTKVLWMRRQRVL 102
Score = 26.9 bits (59), Expect = 8.8
Identities = 15/70 (21%), Positives = 27/70 (38%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KR + + R KRK + KRK + + K +++R +K +
Sbjct: 52 KRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRA 111
Query: 362 KKKKEKRKKR 371
KK +K +
Sbjct: 112 AKKIDKHQYH 121
Score = 26.9 bits (59), Expect = 9.4
Identities = 13/87 (14%), Positives = 36/87 (41%)
Query: 281 AFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
+ A S I ++ ++++ R + + ++K + K+K + R +
Sbjct: 33 SMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRNARMPTK 92
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEK 367
R+++ ++ +K + KK K +
Sbjct: 93 VLWMRRQRVLRRLLRKYRAAKKIDKHQ 119
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.4 bits (63), Expect = 2.6
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKK 333
++++ E + ++ K+K R K+RKE+ K +K K+
Sbjct: 135 LKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
Score = 27.6 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK 344
KK+ + + K+ KEK + KR+K++RK ++ K+
Sbjct: 136 KKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 28.4 bits (63), Expect = 2.6
Identities = 14/72 (19%), Positives = 30/72 (41%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+R K +R ++ + + + K+ + K+ KK+ +K+ R+ + +K
Sbjct: 105 LRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKENREVGDWRKN 164
Query: 359 KKKKKKKEKRKK 370
E RKK
Sbjct: 165 IDALSGMEGRKK 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.4 bits (64), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKE 323
++R+ R R+ K+K +R+ +KRKE
Sbjct: 166 IVRQVRLRRDSKEKNERRLAYQKRKE 191
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 27.3 bits (60), Expect = 2.7
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + K+ + + + +++R +K R K K + E + K
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHK 44
Score = 26.9 bits (59), Expect = 3.5
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K K +K +K + K ++ + +K + K + + + + K + E +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENER 54
Score = 26.5 bits (58), Expect = 4.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
K K KK +K + K ++++ +K + K K R E + K + + E+ +K+
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58
Score = 26.5 bits (58), Expect = 5.4
Identities = 9/57 (15%), Positives = 26/57 (45%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + +K + + K R+++ RK + + K + + + K + + + +KK
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58
Score = 26.1 bits (57), Expect = 6.1
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K K K+ K ++ K +R++ ++ + K K + + + K
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHK 44
Score = 25.7 bits (56), Expect = 8.0
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K + K+ K + K ++ + +K R K K + + K + + E +KK
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 2.8
Identities = 11/65 (16%), Positives = 28/65 (43%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ + + K+ ++ +RKE E+K ++K + + + + EE+ +
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 361 KKKKK 365
K K +
Sbjct: 76 KNKIQ 80
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 27.7 bits (61), Expect = 2.9
Identities = 12/70 (17%), Positives = 33/70 (47%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
+ E +I+ K+ R+ K + R KR ++++ +K+K + +++ K + +
Sbjct: 28 LSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLE 87
Query: 353 EEKKKKKKKK 362
+ + K +
Sbjct: 88 LDALRSKYEA 97
Score = 26.6 bits (58), Expect = 6.7
Identities = 11/68 (16%), Positives = 33/68 (48%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+E + K+++R K + + K+ +K++ +K++ + +++ +K E K +
Sbjct: 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89
Query: 363 KKKEKRKK 370
+ K +
Sbjct: 90 ALRSKYEA 97
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 29.1 bits (65), Expect = 2.9
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+K K KE+ + + + +KKK K+ + K K + K +
Sbjct: 663 RKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKG 722
Query: 370 K 370
K
Sbjct: 723 K 723
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 28.4 bits (63), Expect = 3.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KKR KK + KK K + ++K EE
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
Score = 28.0 bits (62), Expect = 4.3
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K++ KK K K+ K + +++ E+
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
Score = 27.7 bits (61), Expect = 6.1
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK+ +K K +K + + ++K +E
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSA 143
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 305 RKRRKKKKKRKRKRKKRKEKE 325
R+ R++KK K K++ +
Sbjct: 158 RQGRERKKIAKHLIKEQSDPF 178
Score = 26.8 bits (60), Expect = 8.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 337 KKKRKKKKRKKKKRKKEEK 355
++ R++KK K K++
Sbjct: 158 RQGRERKKIAKHLIKEQSD 176
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 28.7 bits (64), Expect = 3.0
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR-KKKRKKKKRKKKKRKKEEKKKKKK- 360
E ++ K K+ + + + + KK + KRK E ++ K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 361 -KKKKKEKRKK 370
K K
Sbjct: 298 NNDKINYTDIK 308
Score = 27.2 bits (60), Expect = 8.9
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ E ++ K K K + ++ + K KK ++ +
Sbjct: 284 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFEL 336
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 28.6 bits (64), Expect = 3.3
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKR-KKKRKKKKRKKKKRKKEEKKKKKK- 360
E ++ K K+ + + + + KK + KRK E ++ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 361 -KKKKKEKRKK 370
K K
Sbjct: 264 NNDKINYTDIK 274
Score = 27.5 bits (61), Expect = 6.4
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K+K ++ + +K K + +K + K K+ + +
Sbjct: 250 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTF 304
Score = 27.5 bits (61), Expect = 6.5
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K++ E ++ K K K + ++ + K KK ++ +
Sbjct: 250 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFEL 302
Score = 27.5 bits (61), Expect = 7.7
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKK-KRK-KKRKKKKRKKKKRKKEEKKKK 358
E+ E+ K K+ + + + KK ++ K+K E+ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 359 KKKKKKKEKRKKR 371
K K
Sbjct: 264 NNDKINYTDIKTL 276
Score = 27.1 bits (60), Expect = 9.5
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K+ + E E KK + ++K + ++ K K K
Sbjct: 218 FPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKYNNDKINYTDIKTLS 277
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 27.7 bits (61), Expect = 3.3
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRK 337
++R + R K K ++ R + +R+ K+
Sbjct: 4 SKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKH 41
Score = 27.6 bits (61), Expect = 3.3
Identities = 3/56 (5%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR--KKEEKKKKKKKKKKKEKRKKR 371
+ K++ + + K + ++ R++
Sbjct: 63 PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRF 118
Score = 27.2 bits (60), Expect = 4.6
Identities = 5/72 (6%), Positives = 17/72 (23%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ ++ +K K K++ E + + +
Sbjct: 48 GYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWA 107
Query: 359 KKKKKKKEKRKK 370
+ + +R
Sbjct: 108 QHLSEDVRRRFY 119
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 28.4 bits (64), Expect = 3.4
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLR 279
+A++ A +G VS +N R
Sbjct: 160 EDALKVANEKGVTVSC-DLNYR 180
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 27.7 bits (62), Expect = 3.4
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K K ++ + RK +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.7 bits (62), Expect = 3.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K R+ R ++ RK +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.7 bits (62), Expect = 3.9
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + +R +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.3 bits (61), Expect = 5.0
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.9 bits (60), Expect = 6.2
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKK 349
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 26.9 bits (60), Expect = 7.1
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKE 353
K + +R + +K ++ +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 7.9
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRK 346
K K ++ + RK +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 8.4
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K K + + RK +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 8.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEKR 368
K K R+ +K +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 8.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKR 350
K K ++ R RK +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 9.9
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 346 KKKKRKKEEKKKKKKKKKKKEKRKKR 371
K + + + +K RK
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIP 28
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 28.6 bits (63), Expect = 3.4
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 9/156 (5%)
Query: 123 ESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 182
++ T+ ++V+ + +F + +M+ L + S G+ L
Sbjct: 150 DAGDTNIPEDVKEKLIRF---AKAGLAVAMMKGKSYLSIGSVSMGIAGSVVQEDFFQNYL 206
Query: 183 GLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWA------GITMTTVGYGDICP 236
G+ ++ M + +K+E++ + E G T
Sbjct: 207 GMRNEYVDMSEFVRRIELGIYDKEEYERALKWVKENCKVGPDNNRDGFKRTEEQKEKDWE 266
Query: 237 TTPLGKMIGSNQMRREKALKRREAMERAKREGSIVS 272
+ +I + M K L+ E A +IV+
Sbjct: 267 ISVKMALIARDLMVGNKKLEEMGYGEEALGRNAIVA 302
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 28.8 bits (63), Expect = 3.5
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
++K+K + ++K +E+ K +++ K+ K K + + ++ KKE +K +K
Sbjct: 12 KEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEK 65
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 28.4 bits (64), Expect = 3.5
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKK 349
K R+ + + + K K
Sbjct: 234 KVGLIAARRTGRLRGQAAATAAKADK 259
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 27.3 bits (60), Expect = 3.6
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKR 350
++K+++ K+ K+++ KK+K+ R
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKR 345
+ K K+ K+ K+KR KK+K+ R
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 28.8 bits (65), Expect = 3.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K KKK + K+K+K + KKE
Sbjct: 21 DMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
Score = 27.6 bits (62), Expect = 7.4
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ + + + + + K KKK + K+K K + KKE +
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKA-GRGGGKRKEKLENMKKEMEIN 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.7 bits (65), Expect = 3.6
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKK--KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
K++DLID E + + K+ ++ + RKEK+ + ++ +K R
Sbjct: 373 KAIDLID-----EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRD 427
Query: 342 KKKRKKKKRKKEEKKKKKKKKKKKEK 367
++R +++ + +K K+K+ ++ +
Sbjct: 428 TEQRLREQVEDTKKSWKEKQGQENSE 453
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.0 bits (63), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 316 RKRKKRKEKEKKKKKRKKKKRKKKRKK 342
R RK KEK KK++K K+ R++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 27.6 bits (62), Expect = 5.4
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 249 MRREKALKRREAMERAKREGSIVSF------HHVNLRDAFAKSMDLIDVIVDTEILIREK 302
+ ++ + EA RA++ V++ N+ F L+RE
Sbjct: 131 LEDKRQVSVEEAKNRAEQWN--VNYVETSAKTRANVDKVF-------------FDLMREI 175
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKK 329
R RK K+K +K++K K +++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK--RKKKKRKKKKRKKE 353
IL +++ ++ K++ +R + K + K + + +K++ + + R+K+ +E
Sbjct: 21 YILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQE 80
Query: 354 E 354
E
Sbjct: 81 E 81
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 27.3 bits (60), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K K K +R+ K + K++ KEE
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEE 31
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 123
Score = 27.6 bits (61), Expect = 3.8
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+I + ++ RK K +K K + K+ + +R+ K ++ K KK+++K+R
Sbjct: 59 TVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
Score = 27.2 bits (60), Expect = 4.7
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
IR R+ R + +++ ++ K KK + R KK + +R+ K ++ K KK
Sbjct: 47 IRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKK 106
Query: 359 KKKKKKK 365
+++K++
Sbjct: 107 QQRKERL 113
Score = 26.8 bits (59), Expect = 5.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR--KKEEKKKKKKKKKKKEKRKKR 371
+ +KE +K K KK K R KK R ++R K EE K KK+++K+ R
Sbjct: 62 NQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLR 117
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 27.0 bits (59), Expect = 3.8
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
R K +K+++ +K +++ + K R
Sbjct: 70 PESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 26.7 bits (58), Expect = 5.1
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ E + R K +K++ +K +++ + K +
Sbjct: 62 NKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
>1f3u_B Transcription initiation factor IIF, alpha subunit; general
transcription initiation and elongation factor, RNA
polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Length = 171
Score = 27.8 bits (61), Expect = 4.0
Identities = 11/73 (15%), Positives = 30/73 (41%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
V+ + + ER KK ++ + + + +K +++ R+KK ++ + +
Sbjct: 36 VNFATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQ 95
Query: 353 EEKKKKKKKKKKK 365
+ K +K
Sbjct: 96 PWLLRVNGKSGRK 108
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2
1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4*
1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4*
1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Length = 92
Score = 26.7 bits (59), Expect = 4.1
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
++ + ++ K R+ +E+ K K K KK K + K ++
Sbjct: 23 EKVRSGRQTGMKWIDRQ-RERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLRE 81
Query: 366 EKRKKR 371
R R
Sbjct: 82 GWRAGR 87
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 27.2 bits (60), Expect = 4.1
Identities = 6/60 (10%), Positives = 13/60 (21%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ + R+ + K + K K + +K K
Sbjct: 51 QLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAK 110
Score = 27.2 bits (60), Expect = 4.9
Identities = 7/51 (13%), Positives = 10/51 (19%), Gaps = 1/51 (1%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR-KKEEKKKKKKKKKKKEK 367
RK + + K K K R +K
Sbjct: 59 NGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGA 109
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription,
epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A
3u86_A 3u88_A*
Length = 550
Score = 28.6 bits (63), Expect = 4.3
Identities = 13/93 (13%), Positives = 24/93 (25%)
Query: 266 REGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKE 325
EGS HV +S+ + V ++ I + + +
Sbjct: 424 EEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSGTVAGTARGPEGGSTAQVPAPTAS 483
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ + +K K K K K
Sbjct: 484 PPPEGPVLTFQSEKMKGMKELLVATKINSSAIK 516
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 28.1 bits (63), Expect = 4.3
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 258 REAMERAKREGSIVSFHHVNLR 279
++A V F N R
Sbjct: 151 LILAQKAHAYQKKVCF-DFNYR 171
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.0 bits (63), Expect = 4.4
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKK 328
L+ + R ++ ++KR ++ K K
Sbjct: 165 LLTLETRRNMSLNIDGKRSGKQKRTDRVKGK 195
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.1 bits (62), Expect = 4.5
Identities = 9/68 (13%), Positives = 25/68 (36%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + + R +KK + R E+ K + ++ +KR + + K +
Sbjct: 72 KVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVF 131
Query: 360 KKKKKKEK 367
+ ++
Sbjct: 132 PTEIVGKR 139
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.5 bits (63), Expect = 4.6
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+K + + + E K + + K ++K K + + K
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Score = 28.1 bits (62), Expect = 6.2
Identities = 6/58 (10%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+++ K ++ + K + K ++K K + + K
Sbjct: 634 VKKCPAAKAYEELSNTDLEFKF----PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 28.3 bits (64), Expect = 4.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 241 GKMIGSNQMRREKALKR-REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI 292
K IG N+ +A++R R A ERAKR S + + + D+ + +D I
Sbjct: 271 KKDIGPNK----RAVRRLRTACERAKRTLSSSTQASIEI-DSLYEGVDFYTSI 318
>2xlk_A CSY4 endoribonuclease; hydrolase-RNA complex, endoribonuclease,
crispr; 1.80A {Pseudomonas aeruginosa} PDB: 2xlj_A
2xli_A
Length = 191
Score = 27.6 bits (61), Expect = 4.8
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
R + K +R R+R R+ +++ RK+ R
Sbjct: 106 RVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLD 144
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 28.3 bits (62), Expect = 4.8
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K + K K KK+ + ++ + E K
Sbjct: 520 AEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_U 4a1c_U 4a1e_U
Length = 124
Score = 27.2 bits (60), Expect = 4.8
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 299 IREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
I R+ + +++R+ K++ K K + R KK + +RK K+++E K
Sbjct: 48 IGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKPLDIRVKKTRAIRRKLTKKQREAVLVK 107
Query: 359 KKKKKKKEKRKK 370
+KK +K
Sbjct: 108 TQKKLNNFGLRK 119
Score = 26.8 bits (59), Expect = 5.9
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKR--KKEEKKKKKKKKKKKEKRKKR 371
+KR++ K + K K K R KK R +++ KK+ + K +KK R
Sbjct: 63 NEKRRQAVKDQFKGKSLKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLR 118
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 28.3 bits (64), Expect = 4.9
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E + R+ RK ++++ K KE K +K+K ++ +K R+K +++ K ++
Sbjct: 261 EPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYRE 320
Query: 364 KKEKRKKR 371
K++++ +
Sbjct: 321 KRQQQPLK 328
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 27.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E KKK KK+K K + +K K + K + KK K+
Sbjct: 4 EVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKE 49
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 26.5 bits (58), Expect = 5.0
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 330 KRKKKKRKKKRKKKKRKK 347
RK KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.5 bits (60), Expect = 5.0
Identities = 12/71 (16%), Positives = 23/71 (32%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
E + R K +K K + + K ++ + ++ RK + K
Sbjct: 62 EAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSS 121
Query: 361 KKKKKEKRKKR 371
+KKK
Sbjct: 122 TEKKKMDEIAP 132
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 27.9 bits (61), Expect = 5.3
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ KK + + + + K ++ K+ + R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
Score = 27.5 bits (60), Expect = 6.2
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ KK + R R E + K ++ K+ + R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 28.2 bits (63), Expect = 5.4
Identities = 6/55 (10%), Positives = 20/55 (36%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
ID I L + ++ + K++ + ++ +E + +++
Sbjct: 4 IDKINSCYPLFEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P*
1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P*
1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P*
1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 27.2 bits (60), Expect = 5.6
Identities = 12/70 (17%), Positives = 33/70 (47%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+++K + + R+R++K+ +K RK K ++ K+ + + R + K ++ +
Sbjct: 52 AKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRD 111
Query: 362 KKKKEKRKKR 371
+ + R
Sbjct: 112 EGTLSSSQYR 121
Score = 26.8 bits (59), Expect = 8.9
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K KK + + R+ ++K+ +K +K K R+ K E + + ++ K ++ +
Sbjct: 51 QAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELR 110
Query: 368 RKKR 371
+
Sbjct: 111 DEGT 114
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 27.1 bits (60), Expect = 6.0
Identities = 4/25 (16%), Positives = 5/25 (20%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEK 355
KK +K E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 27.1 bits (60), Expect = 6.9
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKK 348
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.7 bits (59), Expect = 8.3
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 344 KRKKKKRKKEEKKKKKKKKKKKE 366
+K +KE E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB:
3akk_A* 3akl_A*
Length = 325
Score = 27.9 bits (61), Expect = 6.0
Identities = 11/130 (8%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 241 GKMIGSNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAK-----SMDLIDVIVDT 295
+ + +++ + + ++ + ++ + DA + M+ I I+D
Sbjct: 200 IDELNARIYNFPQSILKDDNDKKINYYDFLTQTNNKDCLDALLRIYPRIDMNKIHSIIDN 259
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+ E ++ +RK + + + + K+
Sbjct: 260 TPFMSE----IHKEFLHTMLDERKSKIIDVAHTRAIELSLQHKQAHSNPYDNADDLDNSN 315
Query: 356 KKKKKKKKKK 365
+ K+++
Sbjct: 316 EYTPTPKRRR 325
>1nz8_A Transcription antitermination protein NUSG; transcription
elongation, riken structural genomics/proteomics
initiative, RSGI; NMR {Thermus thermophilus} SCOP:
d.58.42.1
Length = 119
Score = 26.8 bits (60), Expect = 6.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRK 317
K+ L D I I E E + KK+ ++K
Sbjct: 25 IKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 28.1 bits (63), Expect = 6.1
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 277 NLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKR 318
F ++ + +I ++++L R++ ++
Sbjct: 432 AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 473
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 27.9 bits (63), Expect = 6.2
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K++K + K + + ++KK K+
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.8 bits (62), Expect = 6.2
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K +++ KK+K++ + KKK + E + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 27.8 bits (62), Expect = 6.8
Identities = 9/68 (13%), Positives = 22/68 (32%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + R+ + + K + K ++ KKK + + + K
Sbjct: 40 DSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLK 99
Query: 364 KKEKRKKR 371
+ +K R
Sbjct: 100 VSQIKKVR 107
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor
6, EIF6, transla large ribosomal subunit, rRNA; 3.52A
{Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Length = 109
Score = 26.5 bits (58), Expect = 6.3
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+R ++ + K RK+ + KK K + K+ K+ K +
Sbjct: 38 RRRYDMKQSGFGGQTKPIFRKKAKTTKKVALKFDCTTCKTKRVIPIKRCKTIVFMDITQI 97
Query: 362 KKKKEKRK 369
KK K +K
Sbjct: 98 KKAKVNKK 105
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/60 (16%), Positives = 33/60 (55%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+R+ ++ KK+ + + +R + K+ K ++++ + K ++ K+ E+ ++K+ +
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+RK K+ ++ K KR++KR + + KR +E + + ++ R
Sbjct: 3 RRKSCIVKEMEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFR 54
>2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain; 2.50A {Mus musculus}
Length = 179
Score = 27.3 bits (61), Expect = 6.6
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKK 329
+ E+KR ++ K R + K +++ + +
Sbjct: 151 EDEKKRFEEGKGRYLQMKAKRQGHTEPQ 178
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain, thioesterase, structural genomics, structural
genomics consortium, SGC; 2.80A {Homo sapiens}
Length = 193
Score = 27.4 bits (61), Expect = 6.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKK 327
+ E+KR ++ K R + K +++ +
Sbjct: 167 EDEKKRFEEGKGRYLQMKAKRQGHAE 192
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 27.3 bits (60), Expect = 6.7
Identities = 12/65 (18%), Positives = 26/65 (40%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
R KKK+ +KR +E + K +++++ + K+ + + K K +
Sbjct: 20 RIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSK 79
Query: 367 KRKKR 371
K
Sbjct: 80 HDKYL 84
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 27.4 bits (61), Expect = 6.9
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R E K K+ ++K K K EEKK
Sbjct: 159 RNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 27.4 bits (61), Expect = 6.9
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 278 LRDAFAK-----SMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK 329
++DAFA ++ + E ++ + K K + K K+ +EK K+K
Sbjct: 58 VQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEK 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.6 bits (62), Expect = 7.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K +EK K KR +++ +K+ ++ ++K + + K+K
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.3 bits (60), Expect = 7.4
Identities = 12/69 (17%), Positives = 28/69 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
K +++ + KK E K+ + + +KK K + + K + K ++K
Sbjct: 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71
Query: 362 KKKKEKRKK 370
+ ++K
Sbjct: 72 ELAEKKATD 80
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2 PDB: 3ocq_A
Length = 168
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 337 KKKRKKKKRKKKKRKKEE 354
+ +R++ K +KK + +
Sbjct: 151 RMRRQEIKAQKKAQSSTD 168
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 25.8 bits (57), Expect = 7.4
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K +K+ +++ RK K + +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDL 31
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Length = 197
Score = 27.0 bits (59), Expect = 7.4
Identities = 9/69 (13%), Positives = 25/69 (36%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ R + K + K +KE + + K +R + + +K ++ E ++
Sbjct: 20 ESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRR 79
Query: 362 KKKKEKRKK 370
+ +
Sbjct: 80 LVRVGVLSE 88
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 26.9 bits (59), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K K RKK +K K ++ K+K K K++ EK
Sbjct: 108 RLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.5 bits (60), Expect = 7.6
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+ + E+ + +R + + R +R KK ++ R+
Sbjct: 69 QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSRE 120
Score = 27.1 bits (59), Expect = 9.0
Identities = 4/49 (8%), Positives = 15/49 (30%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ R ++ + ++ + + + +R KK +
Sbjct: 69 QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQR 117
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 27.5 bits (62), Expect = 7.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 241 GKMIGSNQMRREKALKR-REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI 292
G + N AL + + E+AKR S + + D+F +DL + +
Sbjct: 263 GIDVSDNNK----ALAKLKREAEKAKRALSSQMSTRIEI-DSFVDGIDLSETL 310
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 27.6 bits (62), Expect = 8.0
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 283 AKSMDLIDVIVDTEILIR-EKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
A + ++D +V ++ + K +K K + +R K + K RK
Sbjct: 182 ALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRK 241
Query: 342 KKK 344
+
Sbjct: 242 QYP 244
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 26.9 bits (60), Expect = 8.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKK 330
E++ + R +R RK + KK
Sbjct: 144 EKESHRIAVLRAEQRHIRKAESKKVAT 170
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 25.6 bits (56), Expect = 8.3
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 313 KRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K K K+ K ++ K +R++ ++ + K K + + + K
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHK 44
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 27.5 bits (60), Expect = 8.5
Identities = 13/69 (18%), Positives = 28/69 (40%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
KRE ++ +KK + K + + E K + +K K+ + R + K
Sbjct: 365 KREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGI 424
Query: 362 KKKKEKRKK 370
K++ + +
Sbjct: 425 KRELSDKLE 433
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 27.4 bits (61), Expect = 8.6
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 282 FAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+S + + T +++E +ER K++ R + E+ K K K +
Sbjct: 325 IMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIK--KIEDASNPL 382
Query: 342 KKKRKKKKRKKEE 354
KR+KK R E
Sbjct: 383 LLKRRKKARALEA 395
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 27.6 bits (61), Expect = 8.6
Identities = 12/76 (15%), Positives = 32/76 (42%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
++ + + ++ + + K + + K K+ + K K++++ K+
Sbjct: 520 KKKLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKREEKVKK 579
Query: 354 EKKKKKKKKKKKEKRK 369
++ K+K K KRK
Sbjct: 580 QRSADKEKSKGSLKRK 595
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 27.3 bits (60), Expect = 8.8
Identities = 7/41 (17%), Positives = 21/41 (51%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+++R + +++ + K +K+R + K +++KK
Sbjct: 392 QERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
Score = 27.3 bits (60), Expect = 8.9
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 287 DLIDVIVDTEIL--IREKRERKRRKKKKKRKRKRK-KRKEKEKKKKKRKKKKRKKK 339
I+ + E + +E+R + + K K EKE+ + K K++KK
Sbjct: 379 LCIETLQ--EFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 27.2 bits (59), Expect = 8.9
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 301 EKRERKRRKKKKKRKRKRKKRKE 323
E E + R ++ R R++ ++
Sbjct: 2 EPEEERIRYSQRLRGTMRRRYED 24
Score = 27.2 bits (59), Expect = 9.0
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
E E+++ + ++ R R++ + + E K+ ++K
Sbjct: 2 EPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEK 43
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 26.6 bits (58), Expect = 8.9
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+ KK+ + + KRK +E + KKK
Sbjct: 97 KEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPSS 133
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.5 bits (62), Expect = 9.1
Identities = 16/86 (18%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 280 DAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKK--KKKRKKKKRK 337
D + + D + + + + +++RR+ K+ + R +R + K+ K KR+ K
Sbjct: 12 DYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTT 71
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ + + K K++ + E++ +K +++
Sbjct: 72 EIQNRVKELKEEIDRLEEELRKVEEE 97
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target,
NYSGXRC, PSI, protein structure initiative; 2.40A
{Mycobacterium tuberculosis} SCOP: c.26.2.4
Length = 163
Score = 26.5 bits (59), Expect = 9.3
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 252 EKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKK 311
+A+ A + A + ++ + A++ D++ E K+
Sbjct: 31 MRAV--DRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKE 88
Query: 312 KKRKR 316
+
Sbjct: 89 RAHNA 93
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 27.1 bits (61), Expect = 9.3
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 258 REAMERAKREGSIVSFHHVNLRDAFAKSMD 287
+ + F ++ R F +S +
Sbjct: 155 HREILTTRANRRHTIF-DLDYRPMFWESPE 183
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 25.9 bits (57), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKK 328
+ KR K+K + R+KR+ +E +K
Sbjct: 79 DSKRLAKRKLIEENREKRRREELEK 103
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T
2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T
2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 26.6 bits (59), Expect = 9.4
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
R ++ + K + +KR + R +R K+ +K ++ + ++
Sbjct: 103 RNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQE 146
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 25.2 bits (55), Expect = 9.6
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
KR +K + ++R+ EK +RK+ K ++ K+ ++ + +
Sbjct: 20 KRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTR 69
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 26.7 bits (60), Expect = 9.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 302 KRERKRRK-KKKKRKRKRKKRKEKEKKKK 329
K++R R+K +K R + R K
Sbjct: 150 KQQRIRQKVEKLDRLKARAPNSSSVDKLA 178
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP:
d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Length = 356
Score = 27.1 bits (60), Expect = 9.8
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 306 KRRKKKKKRKRKR---KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+RR +++ + + + K+ + ++ + + E K K
Sbjct: 3 RRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHK 62
Query: 363 KKKEKRKKR 371
+
Sbjct: 63 PLTARINSD 71
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.8 bits (59), Expect = 9.8
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 302 KRERKRRKKKKKRKRKRK-----KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
+R R + +E K +K K KK K K+ K
Sbjct: 128 RRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 27.3 bits (60), Expect = 9.9
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+E + ++K +K+K+ + K K E K K
Sbjct: 302 RELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.372
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,530,736
Number of extensions: 361962
Number of successful extensions: 12493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7935
Number of HSP's successfully gapped: 1983
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)