RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6333
(371 letters)
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 89.9 bits (223), Expect = 2e-23
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 179 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGY 231
++ G + L + +L S LA AE+ + ++ P WWA T TTVGY
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 77.3 bits (190), Expect = 3e-18
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 178 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT 237
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
Query: 238 TPLGKMIGSNQM 249
T G+ + M
Sbjct: 64 TLWGRCVAVVVM 75
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 76.6 bits (188), Expect = 8e-18
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 158 ILKLARHSTGLQSLGFT--LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE-HDTKFVS 214
I +L G + L S+ L+ L + +LAY A D + + S
Sbjct: 1 ITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGS 60
Query: 215 IPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQM 249
+ F+++ TM T+GYG + P PL + + +
Sbjct: 61 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEA 95
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 70.0 bits (171), Expect = 2e-15
Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 31/155 (20%)
Query: 28 PLFQIIAIISIMFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYL 87
PL ++ +LS + + + L +L +V+ + + +Y
Sbjct: 6 PLVELGVSY---AALLSVIVVVVEYTMQLSG-------EYLVRLYLVDLILVIILWADYA 55
Query: 88 LRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVV 147
R S + + K + ++ A++P + + +
Sbjct: 56 YRAYKSGDPAGYVK--KTLYEIPALVPAGLLAL-------------------IEGHLAGL 94
Query: 148 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 182
+FR++R+LR L++ + + ++ +L
Sbjct: 95 GLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 65.9 bits (161), Expect = 2e-14
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 184 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 243
+L L + V+I+ + + + E S + +W +T+ TVGYGD P+TPLG
Sbjct: 3 TRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDYSPSTPLGMY 56
Query: 244 IGS 246
Sbjct: 57 FTV 59
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 61.5 bits (149), Expect = 1e-12
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 173 FTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEH-DTKFVSIPETFWWAGITMTTVGY 231
+ L+ S+ + L + +L Y + F+++ T+ TVGY
Sbjct: 19 WALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGY 78
Query: 232 GDICPTTPLGKMIGSNQM 249
GD+ P T I + ++
Sbjct: 79 GDMHPQTVYAHAIATLEI 96
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 38.3 bits (89), Expect = 3e-04
Identities = 12/71 (16%), Positives = 30/71 (42%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ RK ++ + + K+ E+E +K ++ K K+K +K +E ++
Sbjct: 53 AAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAH 112
Query: 360 KKKKKKEKRKK 370
+ ++K
Sbjct: 113 LAAMLERLQEK 123
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/70 (18%), Positives = 32/70 (45%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ R+ +K + + K+K +K + K+ R+ +R +E+ K +
Sbjct: 69 LAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAE 128
Query: 360 KKKKKKEKRK 369
+ +K KE ++
Sbjct: 129 EVRKNKELKE 138
Score = 32.9 bits (75), Expect = 0.018
Identities = 12/75 (16%), Positives = 32/75 (42%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
IL + +R+ +E +KK + +++++ ++ + K +KR+ E +
Sbjct: 20 ILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV 79
Query: 357 KKKKKKKKKEKRKKR 371
+K ++ K
Sbjct: 80 IQKAIEENNNFIKMA 94
Score = 31.0 bits (70), Expect = 0.092
Identities = 9/82 (10%), Positives = 33/82 (40%)
Query: 290 DVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+VI+ +++ + ++K + +++++ ++ K +KR+ ++
Sbjct: 18 EVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
Query: 350 RKKEEKKKKKKKKKKKEKRKKR 371
++ ++ K K K
Sbjct: 78 EVIQKAIEENNNFIKMAKEKLA 99
Score = 27.9 bits (62), Expect = 1.1
Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 294 DTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ I+ +E+ +K + ++ + ++ ++ K K ++ RK K+ K+
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE-KDKHAEEVRKNKELKE 138
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 37.0 bits (85), Expect = 0.003
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+++ + + K + K K ++ K+K K+ K+K++ K+ K+ +E +K K
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 272
Query: 363 KKKEKRKK 370
+ K K
Sbjct: 273 YSEFKSIK 280
Score = 33.5 bits (76), Expect = 0.032
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR------KKKKRKKKKRKKEEKKKKKKKK 362
KKK+ K+ K+ ++ +K K K KK K E++ K++
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 307
Query: 363 KKKEK 367
K K
Sbjct: 308 DYKNK 312
Score = 30.4 bits (68), Expect = 0.31
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKR-KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ + + K + K+K + K++ K K+K+E K+ K+ ++ ++ +
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYK 271
Score = 28.9 bits (64), Expect = 1.0
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 312 KKRKRKRKKRKEK-EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K+K + K+ ++ ++ +K K + + K K+ E+ + + KE+
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 307
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 36.5 bits (84), Expect = 0.003
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKK---RKKKKRKKEEKKKKK 359
ER R K K K K E +K+ K + + K K + +K K+
Sbjct: 182 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKE 241
Query: 360 KKKKKKEKRKK 370
+ K +
Sbjct: 242 NAENYLIKISE 252
Score = 33.5 bits (76), Expect = 0.029
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ + E K+ + +K K+ + K K + K + K
Sbjct: 221 RSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSK 272
Score = 31.1 bits (70), Expect = 0.17
Identities = 9/73 (12%), Positives = 26/73 (35%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
I+E ++ + K + K K + K+ + + + K + K
Sbjct: 172 WIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSK 231
Query: 358 KKKKKKKKEKRKK 370
+ + +K ++ +
Sbjct: 232 EYETQKVPKENAE 244
Score = 30.0 bits (67), Expect = 0.41
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ K K E +K K+ + K + K K + K
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
Score = 29.2 bits (65), Expect = 0.64
Identities = 8/61 (13%), Positives = 18/61 (29%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K R + K + ++ + +K K+ K + K + + K
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSK 272
Query: 365 K 365
Sbjct: 273 Y 273
Score = 29.2 bits (65), Expect = 0.65
Identities = 6/59 (10%), Positives = 16/59 (27%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + + K + K + ++ K + K + + K +
Sbjct: 210 DPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDA 268
Score = 28.5 bits (63), Expect = 1.2
Identities = 5/58 (8%), Positives = 18/58 (31%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ + K + ++ + ++ K+ + K + K K + +
Sbjct: 216 RDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
Score = 28.1 bits (62), Expect = 1.7
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K + R + + K+ + +K K + K + K + + K
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSK 272
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 35.8 bits (83), Expect = 0.004
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ ++ + K+ + K + +K +KK+ +EKK+ + +++K E+
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 31.6 bits (72), Expect = 0.10
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 310 KKKKRKRKRKKRKEKEK---------KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K+ + KE + + ++++KK+ ++KK+ + ++ K EE K +
Sbjct: 75 KESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCE 134
Query: 361 KKKKKEK 367
++E+
Sbjct: 135 LDGRREQ 141
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ KE + K+ + K + +KE+KK+ ++KK+ + ++
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLERE 124
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 35.8 bits (83), Expect = 0.004
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 314 RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
RK + K K + + K + +K+ KEEK K K++ +K K
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136
Score = 32.0 bits (73), Expect = 0.083
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 308 RKKKKKRKRKRKKRKEK-------EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
RK+ ++ K + K + + +K+ K +K K K++ K ++
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCI 142
Query: 361 KKKKKEK 367
KE+
Sbjct: 143 MDNHKER 149
Score = 30.1 bits (68), Expect = 0.34
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
++K K + + K + E +K+ K++K K K +
Sbjct: 87 TNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENE 132
Score = 27.0 bits (60), Expect = 3.1
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 284 KSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEK 326
++ D ++ + RK+ K++K K K + K ++
Sbjct: 95 TNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 26.2 bits (58), Expect = 6.2
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
KE +++ K + + + + E +K+ K++K + +++
Sbjct: 84 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN 131
Score = 25.8 bits (57), Expect = 8.6
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K+ ++K K + + + + + +K+ K+EK K +
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK 128
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 36.3 bits (83), Expect = 0.004
Identities = 10/65 (15%), Positives = 31/65 (47%)
Query: 296 EILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
E R +E ++ +K + + KE+E+ + +++ + ++ +++ + K E +
Sbjct: 235 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
Query: 356 KKKKK 360
+ K
Sbjct: 295 DLQTK 299
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 35.4 bits (81), Expect = 0.008
Identities = 14/72 (19%), Positives = 31/72 (43%)
Query: 295 TEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
T++ + + + + K+ + ++ K K + + KK +KK + K +K KE
Sbjct: 103 TQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKEL 162
Query: 355 KKKKKKKKKKKE 366
+ K+ E
Sbjct: 163 QYIDAISNKQGE 174
Score = 34.6 bits (79), Expect = 0.012
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ E + + KK + +++ K K + E KK +KK + K +K
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYS 158
Score = 32.7 bits (74), Expect = 0.048
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
++ + + K+ + E++ K K + + KK ++K + K +K K+ +
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYI 165
Query: 365 KEKRKKR 371
K+
Sbjct: 166 DAISNKQ 172
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 33.5 bits (76), Expect = 0.036
Identities = 8/65 (12%), Positives = 19/65 (29%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K++ + ++ K K + ++KK+ K K
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVK 246
Query: 366 EKRKK 370
+ +K
Sbjct: 247 KTQKI 251
Score = 31.9 bits (72), Expect = 0.10
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+KKK+ + KK +K + K++ K+ + + K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Query: 369 K 369
Sbjct: 289 L 289
Score = 31.5 bits (71), Expect = 0.15
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+K+K+ + K K+ +K + +++ K+ + + KR
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKR 282
Score = 29.2 bits (65), Expect = 0.81
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K + ++KK+ + K KK +K + K+E K+ + +
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEI 279
Score = 28.4 bits (63), Expect = 1.3
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
RKKK+ K K+ +K + K++ K E + K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Query: 367 K 367
Sbjct: 289 L 289
Score = 28.4 bits (63), Expect = 1.3
Identities = 6/55 (10%), Positives = 16/55 (29%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+++ + +K K K + +KKK+ + +
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTK 241
Score = 27.7 bits (61), Expect = 2.6
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K+K+ + KK +K K++ +E + + K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/61 (13%), Positives = 20/61 (32%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+KK++ K KK ++ + +++ KE + + K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Query: 370 K 370
Sbjct: 289 L 289
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.5 bits (68), Expect = 0.10
Identities = 10/65 (15%), Positives = 26/65 (40%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++ K + + +K + + ++ R KK + K+ K+K ++
Sbjct: 33 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEEN 92
Query: 367 KRKKR 371
+ K+R
Sbjct: 93 REKRR 97
Score = 28.6 bits (63), Expect = 0.37
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K + + + R +K KR KRK + ++KR++EE +K
Sbjct: 52 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
Score = 25.9 bits (56), Expect = 4.2
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKK--------------KKRKKKRKKKKRKKKKR 350
R+ +K K + K R + K+ K+K
Sbjct: 29 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 88
Query: 351 KKEEKKKKKKKKKKK 365
+E ++K+++++ +K
Sbjct: 89 IEENREKRRREELEK 103
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 30.3 bits (68), Expect = 0.10
Identities = 10/65 (15%), Positives = 30/65 (46%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++ ++ ++ K +KEK +K ++KK + + + + EE++++ +
Sbjct: 37 KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGE 96
Query: 363 KKKEK 367
+K
Sbjct: 97 EKMLN 101
Score = 26.8 bits (59), Expect = 1.7
Identities = 4/46 (8%), Positives = 21/46 (45%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K K+ +++KK + + + + ++++++ +++
Sbjct: 60 KDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGP 105
Score = 26.8 bits (59), Expect = 1.7
Identities = 8/69 (11%), Positives = 27/69 (39%)
Query: 303 RERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
E K + ++ K +++K KK +KK+ + + +++
Sbjct: 30 AELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEE 89
Query: 363 KKKEKRKKR 371
+++ +++
Sbjct: 90 QQRVLGEEK 98
Score = 26.5 bits (58), Expect = 2.3
Identities = 6/48 (12%), Positives = 19/48 (39%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K+K +K ++K+ + + + ++++R + K
Sbjct: 58 KEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGP 105
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ +K +KKK + + + + ++++R E+K
Sbjct: 60 KDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGP 105
Score = 26.5 bits (58), Expect = 2.7
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K +K +K+K + + R + ++++++ ++K
Sbjct: 60 KDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGP 105
Score = 26.1 bits (57), Expect = 3.0
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKK 349
+ K KK ++K+ E + + ++++++ ++K
Sbjct: 58 KEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
Score = 25.7 bits (56), Expect = 4.0
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
K K+ ++KKK + + + + ++++ EEK
Sbjct: 60 KDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGP 105
Score = 24.9 bits (54), Expect = 7.8
Identities = 6/43 (13%), Positives = 21/43 (48%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K K+ +K+K+ E + + + ++++++ ++K
Sbjct: 60 KDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNI 102
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 29.9 bits (67), Expect = 0.12
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 325 EKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K+ +K + ++++ K + + + K+ KRK
Sbjct: 51 SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKS 96
Score = 29.1 bits (65), Expect = 0.24
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
++ K+ ++++++ K K + + KE K+K
Sbjct: 53 KEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 28.7 bits (64), Expect = 0.39
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
K KK E+++++ K K + R K K+K
Sbjct: 53 KEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 27.9 bits (62), Expect = 0.63
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 320 KRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
K K+ ++++++ K K + R ++ K+K
Sbjct: 53 KEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 27.5 bits (61), Expect = 0.98
Identities = 5/47 (10%), Positives = 16/47 (34%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+K K+ +++ + K + + + K+ + K
Sbjct: 51 SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 27.2 bits (60), Expect = 1.1
Identities = 4/45 (8%), Positives = 18/45 (40%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
++ KK +++++ + + + + K+ K++
Sbjct: 53 KEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 26.4 bits (58), Expect = 2.0
Identities = 5/47 (10%), Positives = 19/47 (40%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
+K+ K+ ++++ + K K + + ++ K++
Sbjct: 51 SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 31.2 bits (70), Expect = 0.19
Identities = 5/57 (8%), Positives = 13/57 (22%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + R ++ +++ R + KKK
Sbjct: 102 TDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158
Score = 30.0 bits (67), Expect = 0.39
Identities = 5/63 (7%), Positives = 14/63 (22%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ + E ++ + + + KKK +
Sbjct: 103 DEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVM 162
Query: 369 KKR 371
+ R
Sbjct: 163 ETR 165
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.1 bits (70), Expect = 0.20
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ KE +K+++ +K +R K K+K K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 31.1 bits (70), Expect = 0.20
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
+ ++ +KR++ +K +R K ++K EK++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 30.3 bits (68), Expect = 0.32
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ ++ +KR++ E+K ++ K K++ K+R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 30.3 bits (68), Expect = 0.33
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 332 KKKKRKKKRKKKKRKKKKRKKEEKKKKKKKK 362
+ ++ +++++ +K +R K K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 30.3 bits (68), Expect = 0.36
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 305 RKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKK 339
R + K +KR++ +EK ++ K K+K K++
Sbjct: 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.9 bits (67), Expect = 0.47
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
+ ++ +KR+E E+K ++ K K K ++++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.9 bits (67), Expect = 0.47
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 340 RKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+ K +K+R+ EEK ++ K K+K ++++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.72
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 329 KKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ K+ +K++ ++K ++ K KE+ +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.73
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 318 RKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKK 352
R + K+ +KR++ + K +R K ++K ++++
Sbjct: 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.74
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K+ +++++ +K + K K+K +KE+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.74
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ K+ +K++ +E+ ++ K K+K EK +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.77
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ K +KR++ + K ++ K ++K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.86
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 333 KKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ K+ +K+++ ++K R+ + K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.8 bits (64), Expect = 0.97
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 330 KRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
+ K+ +K+R+ +++ ++ + +EK +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.8 bits (64), Expect = 0.97
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRK 341
+ K +K+R+ +EK ++ + K++ +K +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.6 bits (61), Expect = 2.2
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
+ K+ +++++ ++K R+ K K++ +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.6 bits (61), Expect = 2.4
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ K+ +++ + ++K ++ K K++ +K+R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 3.3
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ K +K+R+ +++ + K K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 3.4
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKE 353
+ K+ +K+++ ++K ++ K K+K +KE
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.2 bits (60), Expect = 3.7
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
+ K+ +K+++ +++ ++ K K+K +++R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 3.8
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ K +K+R+ + K ++ K K K E+++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 4.8
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 334 KKRKKKRKKKKRKKKKRKKEEKKKKKKKKKK 364
+ K+ +K++ ++K ++ + K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 30.9 bits (69), Expect = 0.20
Identities = 9/64 (14%), Positives = 30/64 (46%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ ++ K++RK +K ++ + K+ K+R ++ K+ ++ ++ +K +
Sbjct: 103 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI 162
Query: 368 RKKR 371
+
Sbjct: 163 NVTK 166
Score = 29.8 bits (66), Expect = 0.45
Identities = 12/69 (17%), Positives = 32/69 (46%)
Query: 302 KRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKK 361
+ ++ RK RK ++ E K+ + K++ ++ K+ R ++ +K + K
Sbjct: 107 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTK 166
Query: 362 KKKKEKRKK 370
++ R++
Sbjct: 167 ADVEKARQQ 175
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 31.3 bits (70), Expect = 0.20
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 322 KEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
++ E K K+ +++ KR KK + E K E
Sbjct: 154 RDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGE 198
Score = 31.3 bits (70), Expect = 0.24
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 293 VDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKK 343
++ E R+ + + KK + + KR KK + + K
Sbjct: 144 IEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGL 194
Score = 27.0 bits (59), Expect = 4.5
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
R R + KK + + KR KK + K
Sbjct: 151 GRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLG 196
Score = 26.7 bits (58), Expect = 6.0
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
E + R + + + +K E++ KR KK + K +
Sbjct: 145 EDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWH 204
Query: 364 KKEKRK 369
K++
Sbjct: 205 KEDSIH 210
Score = 26.3 bits (57), Expect = 7.9
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
E E + + + + K +K + + KR KK + + + K
Sbjct: 145 EDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSK 192
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 29.8 bits (67), Expect = 0.28
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K K K +R+ K + + K++ KE+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 27.5 bits (61), Expect = 1.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K K K K +R+ K + EK++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 26.4 bits (58), Expect = 3.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
+ K K K +R+ + E E +K++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
Score = 26.0 bits (57), Expect = 4.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 339 KRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
K K K K ++R K E + +K++ KE
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 26.0 bits (57), Expect = 5.0
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 338 KKRKKKKRKKKKRKKEEKKKKKKKKKKKE 366
K + K + +++ K E + +K++ K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 26.0 bits (57), Expect = 5.5
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
K K K + +++ K + + +KR+ ++ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQ 32
Score = 25.6 bits (56), Expect = 6.4
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEK 355
K K + K R++ + + + +K++ +E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 25.6 bits (56), Expect = 6.8
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 337 KKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K K K K +++ + + E +K++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 29.6 bits (66), Expect = 0.34
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 12/123 (9%)
Query: 208 HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAMERAKRE 267
+ S+ + + D G M + + KR
Sbjct: 50 KECVTASMDWVDFLHPVRS-----SDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKRI 104
Query: 268 GSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKK 327
+ V L + + VI DTE E++ + R +R RK + KK
Sbjct: 105 AATSFVTFVAL-SKENNPVPVPRVIPDTE------EEKESHRIAVLRAEQRHIRKAESKK 157
Query: 328 KKK 330
Sbjct: 158 VAT 160
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 29.6 bits (66), Expect = 0.37
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 12/120 (10%)
Query: 203 AEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSNQMRREKALKRREAME 262
+ SI + + T+ GD G M + +
Sbjct: 46 MKHANSAVVTASIDSVDFKSSATV-----GDALELEGFVTHTGRTSMEVYVRVHSNNLLT 100
Query: 263 RAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRK 322
+ + V + D K + V TE E++ + RK RKKR
Sbjct: 101 GERTLTTESFLTMVAV-DESGKPKPVPQVEPQTE------EEKRLYETAPARKENRKKRA 153
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 29.3 bits (65), Expect = 0.58
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEK 367
+ K + + + KK + +R KKK++ K ++ ++ +K ++
Sbjct: 134 QNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDE 186
Score = 27.8 bits (61), Expect = 1.7
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKKR 371
+ K ++ + + KK + ++ + KKK++ K +E R+
Sbjct: 134 QNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAL 181
Score = 26.6 bits (58), Expect = 4.3
Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 302 KRERKRRKKKKKRKRKR--KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
++ + + + K+ +R + + KKK++ K ++ R+ ++ + ++ E
Sbjct: 138 DKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFN 197
Query: 360 KKKKKKE 366
+ E
Sbjct: 198 LLEMDIE 204
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 27.5 bits (61), Expect = 0.64
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+ R+ +E+ K +K ++ + R KKKK+K++K
Sbjct: 34 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 27.5 bits (61), Expect = 0.65
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
E+ + + +++R+ + + KK+K+KR+K
Sbjct: 48 EQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 27.5 bits (61), Expect = 0.69
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 321 RKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+++ K + RK+++ + ++ KKKK+K++K
Sbjct: 42 HALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 24.8 bits (54), Expect = 6.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
IL R R ++ K + RK+R+ + + K+KK+KR+K
Sbjct: 36 ILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 29.3 bits (65), Expect = 0.67
Identities = 10/61 (16%), Positives = 17/61 (27%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K K KKK + + K+ +K E ++ K K
Sbjct: 127 SLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRVEFK 186
Query: 371 R 371
+
Sbjct: 187 K 187
Score = 26.2 bits (57), Expect = 6.7
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
K K +KK + + ++ +K + EE K +
Sbjct: 124 FLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRV 183
Query: 366 EKRK 369
E +K
Sbjct: 184 EFKK 187
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 29.0 bits (64), Expect = 0.74
Identities = 5/78 (6%), Positives = 27/78 (34%)
Query: 292 IVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
++ ++ + + + K ++ + +R K + + +
Sbjct: 171 VIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVD 230
Query: 352 KEEKKKKKKKKKKKEKRK 369
E+ ++ + + + +R+
Sbjct: 231 FEKLSRELDESRDRYRRR 248
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 27.2 bits (60), Expect = 0.87
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRK---KKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+K K +++ E E K+ + + K K + KK KEE KK + K
Sbjct: 9 TQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKD 68
Query: 366 EKRKK 370
K
Sbjct: 69 GKTGN 73
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 28.0 bits (62), Expect = 0.87
Identities = 6/49 (12%), Positives = 25/49 (51%)
Query: 315 KRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
++ + R+ K + ++ ++K + +++ + + E+ K++ +K
Sbjct: 89 VQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
Score = 26.5 bits (58), Expect = 3.1
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 302 KRERKRRKKKKK--RKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+ + R+ K R ++ + K + +KR + R +R K+ +K
Sbjct: 89 VQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 27.4 bits (61), Expect = 1.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 300 REKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKK 347
+ E R +KR K K E +K + +++KR++K+ KKK+KK
Sbjct: 57 KSWWEEGGRVVVEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 26.2 bits (58), Expect = 2.8
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 328 KKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
+K+ K K + +K + +++K+E+KK KKKKKK
Sbjct: 69 EKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 281 AFAKSMDLIDVIVDTEILIREK-----RERKRRKKKKKRK-RKRKKRKEKEKKKKKRKKK 334
A A + + + +VD + + R R R ++KK+ ++ K K ++ K
Sbjct: 32 ADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSK 91
Query: 335 KRKKKRKKKKRKKKKRKKEEKK 356
+ + R + +R K + ++E
Sbjct: 92 EDWESRIRAQRTKLRELRDEGT 113
Score = 27.4 bits (61), Expect = 1.8
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 298 LIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
L+ E + + KK R R R++ ++K+ +K +K K R+ K E + +
Sbjct: 43 LVDEGAIQAKDKKGNSRGRARER---QKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIR 99
Query: 358 KKKKKKKKEKRKK 370
++ K ++ + +
Sbjct: 100 AQRTKLRELRDEG 112
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 26.5 bits (58), Expect = 1.1
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKR 340
K + R RK+ + + ++ K KK+R
Sbjct: 34 YYKLHQVNRPLTMRKDGIQTRNRKVSSKGKKRR 66
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 28.1 bits (62), Expect = 1.3
Identities = 8/75 (10%), Positives = 18/75 (24%)
Query: 297 ILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKK 356
+ + +R + + + E+ + R KK K
Sbjct: 43 TIPNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDG 102
Query: 357 KKKKKKKKKEKRKKR 371
K K + +
Sbjct: 103 TTTFKFKCYASFQDK 117
Score = 26.5 bits (58), Expect = 4.8
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 283 AKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKK 342
+ ++D IV E + + + +K + +
Sbjct: 49 PRCQRMVDEIVK---CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTT 105
Query: 343 KKRKKKKRKKEEKKKKKKKKK 363
K K +++K K+ K
Sbjct: 106 FKFKCYASFQDKKTKETKHIN 126
Score = 25.8 bits (56), Expect = 8.6
Identities = 7/61 (11%), Positives = 16/61 (26%)
Query: 311 KKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
K + E+ + + +K + + + K K + KK
Sbjct: 59 VKCHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKK 118
Query: 371 R 371
Sbjct: 119 T 119
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.4 bits (63), Expect = 1.3
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 324 KEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKK 357
K+ + +K+R K ++ + +K +
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 26.7 bits (59), Expect = 1.3
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 335 KRKKKRKKKKRKKKKRKKEEKKKKKKKKK 363
K R K K K K + + KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAM 44
Score = 25.5 bits (56), Expect = 4.1
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 308 RKKKKKRKRKRKKRKEKEKKKKKRKKKK 335
+K R + +K K K + KK
Sbjct: 15 QKSAMARAKNLEKAKAAGKGSQLEANKK 42
Score = 24.4 bits (53), Expect = 8.2
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 326 KKKKKRKKKKRKKKRKKKKRKKKKRKK 352
K R K K K K + + KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKK 42
Score = 24.4 bits (53), Expect = 8.5
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 331 RKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ R K +K K K + E KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAM 44
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/78 (15%), Positives = 37/78 (47%)
Query: 270 IVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKK 329
++ +V + + K D ++ +K ++ ++ K R E+ + +K
Sbjct: 56 VLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRK 115
Query: 330 KRKKKKRKKKRKKKKRKK 347
K ++K R+++ ++ ++K+
Sbjct: 116 KLEEKDRQEEAQRLQQKR 133
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.5 bits (61), Expect = 1.7
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 305 RKRRKKKKKRKRKRKKRKEKE-----KKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKK 359
+ + +R KK ++E + +K R++ R+KK K + E +
Sbjct: 36 ATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWL 95
Query: 360 KKKKKKEKRK 369
+ K RK
Sbjct: 96 LRVNGKSGRK 105
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 26.7 bits (58), Expect = 2.0
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 304 ERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKR 345
+ R K+ + + +++ KK +++ K K K R
Sbjct: 72 NLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.0 bits (61), Expect = 2.2
Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 2/111 (1%)
Query: 259 EAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRKR 318
+ + ++ +++ DA K+ + + E E R+
Sbjct: 89 RGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPV--EDIEFLEREIDYWIYGIL 146
Query: 319 KKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K +K K+ K +K K + + + + + K ++ K
Sbjct: 147 SKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTK 197
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.9 bits (57), Expect = 2.9
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 330 KRKKKKRKKKRKKKKRKK 347
RK KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 3.7
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 344 KRKKKKRKKEEKKKKKKK 361
RK KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 6.3
Identities = 4/18 (22%), Positives = 4/18 (22%)
Query: 317 KRKKRKEKEKKKKKRKKK 334
K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 7.3
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 332 KKKKRKKKRKKKKRKKKK 349
+K KK+
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 7.7
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 315 KRKRKKRKEKEKKKKKRK 332
RK KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 9.9
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 327 KKKKRKKKKRKKKRKKKK 344
+K KK+
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 320
Score = 27.1 bits (60), Expect = 3.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 242 KMIGSNQMR--------REKALKRREAMERAKREGS 269
K IG + M +E + R A+E A G+
Sbjct: 277 KQIGGDGMMDITDTYKFQEGQEEERLALETALMYGA 312
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 25.1 bits (55), Expect = 3.8
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 309 KKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKR 368
KK++ ++ + K K K + KK + K+K +R +E+ K + + +E+
Sbjct: 12 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 71
Query: 369 K 369
K
Sbjct: 72 K 72
Score = 24.8 bits (54), Expect = 6.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 327 KKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
KK + ++ K K K K + KK + KKK +R +
Sbjct: 12 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 55
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 25.9 bits (57), Expect = 3.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 341 KKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
K+ + + K+ EKR+
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.1 bits (59), Expect = 4.7
Identities = 6/48 (12%), Positives = 21/48 (43%)
Query: 323 EKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRKK 370
+K K++++K+ + + K K + K + ++ ++ +
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 25.8 bits (56), Expect = 4.7
Identities = 9/81 (11%), Positives = 33/81 (40%)
Query: 289 IDVIVDTEILIREKRERKRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
+D ++ ++ + +++ K K + + + + K +RK+ +
Sbjct: 26 LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIAL 85
Query: 349 KRKKEEKKKKKKKKKKKEKRK 369
++ K + +++K K++
Sbjct: 86 TMRQPYLGKLEWIEEEKAKKQ 106
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 92
Score = 25.4 bits (56), Expect = 4.8
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKKEKRK 369
+ ++ + +++E+ K K K KK K + K ++ R
Sbjct: 26 RSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRA 85
Query: 370 KR 371
R
Sbjct: 86 GR 87
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.0 bits (54), Expect = 5.8
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 307 RRKKKKKRKRKRKKRKEKEKKKKKRKKKKR---KKKRKKKKRKKKKRKKEEKKKKKKKKK 363
RR K+K + K R+ + K+ K+ EE ++K++
Sbjct: 28 RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIL 87
Query: 364 KK 365
K+
Sbjct: 88 KR 89
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 24.9 bits (54), Expect = 5.9
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKK 360
K +K K+ EK+K K + ++ K++ ++ + ++ + + KK
Sbjct: 43 KILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 26.2 bits (56), Expect = 7.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 317 KRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKK 348
++KR E+ K+ + K+KK K K
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK 37
>d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus
[TaxId: 63363]}
Length = 128
Score = 25.1 bits (55), Expect = 7.3
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 269 SIVSFHHVNLRDAFAKSMDLIDVIVDTEILIREKRERKRRKKKKKRKRK-RKKRKEKEKK 327
S+ V+ +D+F + + + + I + + +KRK K+ +
Sbjct: 36 SLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLRKRKLLLHKREIMRLYG 95
Query: 328 KKKRKK 333
K + K
Sbjct: 96 KVQEKG 101
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 26.3 bits (57), Expect = 7.3
Identities = 5/65 (7%), Positives = 17/65 (26%)
Query: 306 KRRKKKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKKKKKKKKK 365
+ + ++ + +K K K + + + + +K
Sbjct: 116 EHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRK 175
Query: 366 EKRKK 370
+ K
Sbjct: 176 DGLKL 180
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.4 bits (53), Expect = 9.0
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEEKKKK 358
K+ + K EK ++ +K + + K K + R+K + K
Sbjct: 37 KQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
aeolicus [TaxId: 63363]}
Length = 194
Score = 25.6 bits (55), Expect = 9.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 310 KKKKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRK 351
K + RK+ KR +++++R +K K KK +K
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKK 44
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 24.0 bits (52), Expect = 9.4
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 312 KKRKRKRKKRKEKEKKKKKRKKKKRKKKRKKKKRKKKKRKKEE 354
KK +K+ ++K K K+K +K + + K +
Sbjct: 35 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.372
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,343,461
Number of extensions: 69691
Number of successful extensions: 2895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1866
Number of HSP's successfully gapped: 490
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)