Query psy6334
Match_columns 63
No_of_seqs 124 out of 560
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:45:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka8_A Ferritin, middle subuni 99.8 6.3E-21 2.2E-25 122.3 3.1 62 2-63 109-173 (176)
2 3kxu_A Ferritin; iron storage 99.8 1.8E-20 6.2E-25 122.1 3.9 62 2-63 109-173 (191)
3 3vnx_A Ferritin; 4-helix bundl 99.8 2.7E-20 9.2E-25 122.3 2.9 61 2-62 140-200 (204)
4 1z6o_M Ferritin heavy chain; m 99.7 8.4E-19 2.9E-23 113.7 2.8 62 2-63 121-188 (191)
5 1z6o_A Ferritin light chain; m 99.7 4.1E-19 1.4E-23 117.1 1.3 61 2-62 138-209 (212)
6 3a68_A Sferh-4, ferritin-4, ch 99.7 2.3E-18 7.9E-23 113.6 3.2 61 2-62 145-205 (212)
7 2cih_A Ferritin heavy chain; a 99.7 2.4E-18 8.2E-23 110.8 3.1 62 2-63 113-177 (183)
8 1rcd_A L ferritin; iron storag 99.7 2.1E-18 7.1E-23 110.0 2.4 62 2-63 109-173 (173)
9 3qz3_A Ferritin; structural ge 99.7 1.9E-18 6.5E-23 111.5 1.8 60 2-62 108-168 (184)
10 3e6s_A Ferritin; iron storage, 99.7 2.9E-17 9.8E-22 104.7 4.1 59 2-61 100-161 (168)
11 2v2p_A Ferritin light chain; m 99.7 1.2E-17 4E-22 106.6 2.2 61 2-62 108-171 (174)
12 1s3q_A Ferritin; ferroxidase, 99.6 4.9E-16 1.7E-20 99.1 2.1 60 2-62 101-161 (173)
13 3uno_A Probable bacterioferrit 99.6 1E-15 3.5E-20 99.3 3.0 59 2-61 104-165 (189)
14 1eum_A Ferritin 1; ECFTNA, met 99.5 3.4E-15 1.2E-19 94.0 2.7 60 2-62 99-159 (165)
15 1krq_A Ferritin; H-chain like 99.5 1.1E-14 3.9E-19 91.8 3.4 60 2-62 99-159 (167)
16 1vlg_A Ferritin; TM1128, struc 99.4 4.8E-14 1.6E-18 89.3 2.8 60 2-62 113-173 (176)
17 3bvf_A Ferritin; iron storage, 99.4 8E-14 2.7E-18 89.1 3.4 60 2-62 113-173 (181)
18 2jd6_0 Ferritin homolog, ferri 99.3 1E-12 3.5E-17 82.4 2.7 60 2-62 99-159 (174)
19 3oj5_A Ferritin family protein 98.8 3.8E-09 1.3E-13 67.2 3.4 57 2-61 104-160 (189)
20 3qb9_A Bacterioferritin, BFR; 98.1 1.9E-06 6.5E-11 53.3 3.8 56 2-60 101-156 (174)
21 1jgc_A Bacterioferritin, BFR; 98.1 2E-06 6.8E-11 52.1 2.8 56 2-60 99-154 (161)
22 2y3q_A Bacterioferritin; metal 98.0 6E-06 2E-10 49.8 3.8 55 2-59 99-153 (158)
23 4am5_A Bacterioferritin; metal 97.9 1.1E-05 3.8E-10 49.7 3.9 52 2-56 99-150 (159)
24 2vzb_A Putative bacterioferrit 97.7 3.3E-05 1.1E-09 47.0 3.8 47 2-50 119-165 (170)
25 3gvy_A Bacterioferritin; iron 97.7 4.8E-05 1.6E-09 46.3 4.0 42 2-43 99-151 (161)
26 3uoi_A Bacterioferritin, BFR; 97.5 0.00011 3.6E-09 44.6 3.9 47 2-49 101-147 (161)
27 3fvb_A Bacterioferritin; niaid 97.4 7.7E-05 2.6E-09 46.9 2.7 42 2-43 120-172 (182)
28 3r2k_A Bacterioferritin, BFR; 97.3 0.00017 5.7E-09 43.5 3.4 47 2-49 98-145 (154)
29 2fkz_A Bacterioferritin; ferro 97.3 0.00023 7.9E-09 42.4 3.9 52 2-56 99-150 (155)
30 1nfv_A Bacterioferritin; 24 su 96.8 0.0015 5.1E-08 40.3 3.9 48 2-50 104-151 (179)
31 2qqy_A Sigma B operon; dodecam 95.3 0.016 5.5E-07 33.9 3.3 42 2-44 102-143 (149)
32 1ji5_A DLP-1; dodecamer, four- 93.3 0.088 3E-06 30.9 3.4 40 2-42 102-141 (142)
33 2clb_A DPS-like protein; DI-ir 86.6 0.72 2.5E-05 28.9 3.5 40 3-44 130-169 (188)
34 1n1q_A DPS protein; four-helix 80.5 1.9 6.6E-05 25.3 3.4 39 3-42 110-148 (149)
35 1jig_A DLP-2; dodecamer, four- 79.9 2 6.7E-05 25.1 3.3 39 3-42 107-145 (146)
36 2c41_A DPS family DNA-binding 77.7 2.2 7.4E-05 25.5 3.1 40 3-43 112-151 (158)
37 2vxx_A Starvation induced DNA 77.2 1.6 5.5E-05 27.1 2.5 46 3-49 131-176 (192)
38 2d5k_A DPS, DPS family protein 71.3 3.3 0.00011 24.7 2.7 39 3-42 109-147 (156)
39 1tjo_A Iron-rich DPSA-homolog 64.6 6.5 0.00022 24.2 3.2 40 3-43 132-171 (182)
40 1lko_A Rubrerythrin all-iron(I 61.7 7 0.00024 24.5 2.9 43 4-47 102-144 (191)
41 1mfq_C SRP54, signal recogniti 61.6 3.2 0.00011 25.3 1.3 36 12-54 10-45 (129)
42 3ljc_A ATP-dependent protease 61.1 4.5 0.00015 26.1 2.0 16 25-40 234-250 (252)
43 1qb2_A SRP54, human signal rec 60.9 5.3 0.00018 23.5 2.1 25 29-54 8-32 (109)
44 1j30_A 144AA long hypothetical 57.4 14 0.00047 21.6 3.6 42 4-46 100-141 (144)
45 3kwo_A Putative bacterioferrit 48.7 17 0.0006 21.5 3.1 39 4-43 109-147 (152)
46 2xgw_A Peroxide resistance pro 46.1 13 0.00045 23.5 2.3 44 4-48 148-191 (199)
47 1o9r_A Agrobacterium tumefacie 40.8 28 0.00097 20.7 3.2 38 4-42 121-158 (162)
48 3b5n_D Protein transport prote 39.7 13 0.00046 19.6 1.4 26 29-54 6-31 (64)
49 1r53_A Chorismate synthase; tw 37.5 21 0.0007 25.4 2.4 25 36-60 199-238 (382)
50 1hq1_A Signal recognition part 37.2 5.2 0.00018 23.4 -0.6 23 30-53 9-31 (105)
51 2fjc_A Antigen TPF1; mini ferr 36.5 42 0.0014 19.9 3.4 36 4-40 117-152 (156)
52 2bwb_A Ubiquitin-like protein 36.4 21 0.0007 17.6 1.7 15 24-39 4-18 (46)
53 3bpj_A Eukaryotic translation 35.2 40 0.0014 18.5 2.9 37 9-46 26-67 (80)
54 4eve_A Neutrophil-activating p 33.2 50 0.0017 19.9 3.4 33 4-37 126-158 (164)
55 2chp_A MRGA, metalloregulation 32.9 49 0.0017 19.5 3.3 34 4-38 115-148 (153)
56 1zuj_A Hypothetical protein ll 32.4 41 0.0014 20.9 3.0 39 4-43 128-166 (179)
57 1zs3_A Lactococcus lactis Mg13 32.2 47 0.0016 20.7 3.2 39 4-43 129-167 (182)
58 3iq1_A DPS family protein; csg 32.1 38 0.0013 20.1 2.7 34 4-38 121-154 (159)
59 2k7r_A Primosomal protein DNAI 32.1 22 0.00076 20.1 1.6 36 14-49 29-68 (106)
60 3tso_C RAB11 family-interactin 31.4 41 0.0014 18.7 2.5 18 28-45 30-47 (75)
61 2cf7_A DPR; peroxide resistanc 31.3 32 0.0011 20.7 2.3 39 4-43 122-160 (165)
62 2yjk_A AFP, DPS; metal-binding 30.4 62 0.0021 19.2 3.5 36 4-41 123-158 (161)
63 1wr1_B Ubiquitin-like protein 30.1 35 0.0012 17.7 2.0 16 23-39 13-28 (58)
64 2bk6_A Non-heme iron-containin 29.8 40 0.0014 19.9 2.5 39 4-43 113-151 (156)
65 1sq1_A Chorismate synthase; st 29.6 27 0.00091 24.8 1.9 10 51-60 217-226 (370)
66 2qf9_A Putative secreted prote 29.5 64 0.0022 19.9 3.5 40 6-46 25-65 (179)
67 1x4t_A Hypothetical protein LO 29.3 34 0.0012 19.7 2.0 22 32-55 31-52 (92)
68 1yuz_A Nigerythrin; rubrythrin 28.5 47 0.0016 20.9 2.8 43 4-47 123-165 (202)
69 2p6v_A Transcription initiatio 27.7 43 0.0015 20.0 2.3 22 29-50 13-34 (114)
70 2wlu_A DPS-like peroxide resis 27.4 45 0.0015 20.3 2.5 38 4-42 132-169 (175)
71 2c2u_A DPS, DNA-binding stress 26.7 71 0.0024 20.2 3.4 38 4-42 164-201 (207)
72 3eea_A GAF domain/HD domain pr 25.9 28 0.00097 21.9 1.4 24 34-60 17-42 (162)
73 1zke_A Hypothetical protein HP 25.7 64 0.0022 18.1 2.7 21 27-47 56-76 (83)
74 2dna_A Unnamed protein product 25.5 46 0.0016 17.9 2.0 25 23-48 15-41 (67)
75 2pyb_A NAPA, neutrophil activa 24.4 37 0.0013 20.0 1.7 37 4-41 110-146 (151)
76 1tt8_A Chorismate-pyruvate lya 23.7 25 0.00087 21.5 0.9 24 37-60 98-122 (164)
77 4etr_A Putative uncharacterize 22.9 80 0.0027 18.6 3.0 38 10-48 33-70 (153)
78 3j20_S 30S ribosomal protein S 22.7 34 0.0012 18.5 1.2 34 15-48 21-60 (67)
79 2yw6_A DNA protection during s 22.2 1.2E+02 0.0039 18.6 3.7 39 4-44 120-158 (183)
80 2c2j_A DNA-binding stress resp 21.9 96 0.0033 19.7 3.4 38 4-43 151-188 (211)
81 1vej_A Riken cDNA 4931431F19; 21.6 39 0.0013 18.4 1.3 15 24-39 26-40 (74)
82 1w1n_A Phosphatidylinositol 3- 21.2 75 0.0026 14.6 2.4 26 29-54 6-31 (33)
83 3dm5_A SRP54, signal recogniti 21.1 26 0.00089 24.9 0.6 32 15-53 326-357 (443)
84 2bl8_A Enterocine A immunity p 20.8 43 0.0015 19.6 1.4 15 26-40 68-82 (103)
85 4ecd_A Chorismate synthase; 4- 20.5 46 0.0016 23.7 1.7 26 35-60 205-247 (398)
86 2p58_C Putative type III secre 20.2 49 0.0017 19.8 1.5 22 9-33 94-115 (116)
87 2knz_A Ubiquilin-4; cytoplasm, 20.1 51 0.0017 16.4 1.5 15 24-39 8-22 (53)
No 1
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=99.81 E-value=6.3e-21 Score=122.33 Aligned_cols=62 Identities=50% Similarity=0.870 Sum_probs=59.3
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---CchhhhccccccC
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELKS 63 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l~ 63 (63)
++|.+||++|.+++||++|+||+.+||+|||+.||++++++++++|+|+ |+|+|+||+++|+
T Consensus 109 ~~l~~l~~la~~~~D~~t~~fLe~~fl~eQve~~~~l~~~l~~l~~~g~~~~~~g~ylfD~~~l~ 173 (176)
T 3ka8_A 109 QALLDLHKLATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSVK 173 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHhCHHhhc
Confidence 6899999999999999999999999999999999999999999999993 8999999999875
No 2
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Probab=99.80 E-value=1.8e-20 Score=122.15 Aligned_cols=62 Identities=48% Similarity=0.744 Sum_probs=47.3
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---CchhhhccccccC
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELKS 63 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l~ 63 (63)
++|.+||++|.+++||++||||+++||+|||+.||++++++++++|+|. |+|+|+||+++|+
T Consensus 109 ~~l~~l~~la~~~~D~~t~~fLe~~fL~EQve~i~~l~~~l~~l~~~g~~~~glg~ylfD~~~l~ 173 (191)
T 3kxu_A 109 QALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSSKGSLS 173 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCcchHhcCHHHHh
Confidence 6899999999999999999999999999999999999999999999983 8999999997653
No 3
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa}
Probab=99.79 E-value=2.7e-20 Score=122.34 Aligned_cols=61 Identities=44% Similarity=0.777 Sum_probs=58.8
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~~~l 62 (63)
++|.+||++|.+++||++||||+++||+|||+.||++++++++++|+|+|+|+|+||++++
T Consensus 140 ~~l~~l~~lA~~~~D~~t~~fLe~~fL~EQve~i~~l~~~l~~l~~~g~~~g~ylfD~~l~ 200 (204)
T 3vnx_A 140 QKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYVSQLRRVGKGVGVYLLDQELG 200 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHhcHHhh
Confidence 6899999999999999999999999999999999999999999999999999999999865
No 4
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=99.73 E-value=8.4e-19 Score=113.72 Aligned_cols=62 Identities=26% Similarity=0.540 Sum_probs=57.6
Q ss_pred hhHHHHHhhhccC---CCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---CchhhhccccccC
Q psy6334 2 QALLELHNLASNH---KDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELKS 63 (63)
Q Consensus 2 q~Ll~Lh~lA~~~---~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l~ 63 (63)
+++.+||++|.+. +||++||||+++|++|||+.||++++++++++|++. |+|+|+||+++++
T Consensus 121 ~~i~~l~~~a~~~~D~~d~~~~d~Le~~fl~EQve~~~~l~~~i~~l~k~~~~~~~~g~~lfD~~l~~ 188 (191)
T 1z6o_M 121 KSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLLG 188 (191)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhhhhHHhhc
Confidence 5789999999998 999999999999999999999999999999999874 7899999998764
No 5
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=99.73 E-value=4.1e-19 Score=117.15 Aligned_cols=61 Identities=25% Similarity=0.569 Sum_probs=57.5
Q ss_pred hhHHHHHhhhccCC----CccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-------Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHK----DANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-------GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~----D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-------glg~ylfD~~~l 62 (63)
++|.+||++|.+.+ ||++||||+++||+|||+.|+++|+++++|+|+|. |+|+|+||+++.
T Consensus 138 ~~l~~l~~~a~~~~~~~~D~~t~~fLe~~fleeQve~i~~l~~~l~~L~~~~~~~~~~~~~~g~ylfD~~L~ 209 (212)
T 1z6o_A 138 ERAFYIHREATRNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYLQ 209 (212)
T ss_dssp HHHHHHHHHHHTSCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHGGGGTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCcchHHHHHHHHH
Confidence 67899999999999 99999999999999999999999999999999983 799999999874
No 6
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Probab=99.71 E-value=2.3e-18 Score=113.56 Aligned_cols=61 Identities=41% Similarity=0.807 Sum_probs=58.6
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~~~l 62 (63)
+++.+||++|.+.+||++||||+++||+|||+.|+++++++++++|+|.|+|+|+||+.+.
T Consensus 145 ~~l~~l~~~A~~~~D~~t~~fLe~~fL~EQve~~~~l~~~l~~l~~~g~~~gl~l~D~~l~ 205 (212)
T 3a68_A 145 EKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLL 205 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCeehHHhHHHh
Confidence 6789999999999999999999999999999999999999999999999999999999765
No 7
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=99.71 E-value=2.4e-18 Score=110.84 Aligned_cols=62 Identities=47% Similarity=0.829 Sum_probs=58.8
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---CchhhhccccccC
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELKS 63 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l~ 63 (63)
+++.++|++|.+.+||++|+||+++||+|||+.|+++++++++++|+|. |+|+|+||+++++
T Consensus 113 ~~l~~l~~~a~~~~D~~t~~fLe~~fl~eq~e~~~~l~~~l~~l~~~g~~~~~lg~~l~D~~ll~ 177 (183)
T 2cih_A 113 QSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 177 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhheeCHHHhc
Confidence 5789999999999999999999999999999999999999999999994 8999999999875
No 8
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=99.71 E-value=2.1e-18 Score=109.95 Aligned_cols=62 Identities=40% Similarity=0.729 Sum_probs=59.1
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---CchhhhccccccC
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELKS 63 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l~ 63 (63)
+++.++|++|.+.+||++|+||+++||+|||+.|+++++++++++|+|. |+|+|+||+++|+
T Consensus 109 ~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~~~l~~~l~~l~~~g~~~~~~g~~~~D~~~l~ 173 (173)
T 1rcd_A 109 QALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 173 (173)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhccHHhcC
Confidence 5789999999999999999999999999999999999999999999995 8999999999885
No 9
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=99.71 E-value=1.9e-18 Score=111.52 Aligned_cols=60 Identities=30% Similarity=0.479 Sum_probs=57.1
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.++|++|.+.+||++||||+ +||+|||+.|+++++++++++|+|+ |+|+|+||++++
T Consensus 108 ~~l~~l~~la~~~~D~~t~~fLe-~fl~EQve~~~~l~~~l~~l~~~g~~~~~~~~~D~~l~ 168 (184)
T 3qz3_A 108 QQINKLAHVAFTSQDYSTFNFLQ-WYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLA 168 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHhHHHh
Confidence 67899999999999999999999 8999999999999999999999995 999999999864
No 10
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=99.67 E-value=2.9e-17 Score=104.73 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=55.5
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcc--ccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFD--KEL 61 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD--~~~ 61 (63)
++|.+||++|.+++||++|+||+. ||+|||+.|+++++++++++++|. +.|.|+|| +++
T Consensus 100 ~~l~~l~~la~~~~D~~t~~fLe~-fl~eQve~~~~l~~~l~~l~~~g~~~~~l~~~D~~~el 161 (168)
T 3e6s_A 100 RSLLNLAEAASTCHDFAVMAFLNP-FHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSFL 161 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHCCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcCeeeeeccHHHH
Confidence 689999999999999999999997 999999999999999999999996 79999999 765
No 11
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=99.67 E-value=1.2e-17 Score=106.55 Aligned_cols=61 Identities=48% Similarity=0.763 Sum_probs=57.4
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~l 62 (63)
+++.++|++|.+.+||++|+||+.+||+|||+.|+++++++++++|+|. |+|+|+||+..|
T Consensus 108 ~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~~~l~~~l~~l~~~g~~~~~~g~~l~D~~~l 171 (174)
T 2v2p_A 108 QALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTL 171 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeeecHHHh
Confidence 5789999999999999999999999999999999999999999999994 899999999554
No 12
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=99.57 E-value=4.9e-16 Score=99.07 Aligned_cols=60 Identities=32% Similarity=0.497 Sum_probs=56.4
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.++|++|.+.+||++|+||+. ||+|||+.|+.+++++++++|+|. |+|+|+||+.+.
T Consensus 101 ~~~~~l~~~a~~~~D~~t~~fle~-~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 161 (173)
T 1s3q_A 101 KRIHELVEMAMQEKDFATYNFLQW-YVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKELS 161 (173)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchHhHHhHHHh
Confidence 578899999999999999999997 999999999999999999999995 899999999754
No 13
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=99.56 E-value=1e-15 Score=99.31 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=55.7
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc---Cchhhhccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFDKEL 61 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~---glg~ylfD~~~ 61 (63)
+++.++|++|.+.+||++|+||+ +||+|||+.|+++++++++++|+|. ++++|+|++.+
T Consensus 104 ~~l~~l~~la~~~~D~~t~~fLe-~fL~EQve~~~~l~~~l~~l~~~g~~~~~l~~yL~~~~~ 165 (189)
T 3uno_A 104 DQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVD 165 (189)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 67899999999999999999999 8999999999999999999999984 79999999865
No 14
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=99.52 E-value=3.4e-15 Score=93.95 Aligned_cols=60 Identities=28% Similarity=0.470 Sum_probs=56.1
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.++|++|.+.+||++|+|++ .|++|||+.++.+++++++++|+|. |+|+|+||+.+.
T Consensus 99 ~~~~~l~~~a~~~~D~~~~~fl~-~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 159 (165)
T 1eum_A 99 QKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELS 159 (165)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhHHhHHHH
Confidence 46889999999999999999999 7999999999999999999999995 899999999753
No 15
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=99.49 E-value=1.1e-14 Score=91.80 Aligned_cols=60 Identities=23% Similarity=0.450 Sum_probs=56.1
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.++|++|.+.+||++|+|++. |+.|||+.++.+++++++++|+|. |+|+|+||+.+.
T Consensus 99 ~~~~~l~~~a~~~~D~~~~~~l~~-~l~Eq~e~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 159 (167)
T 1krq_A 99 KSINTLVEHMLTHKDYSTFNFLQW-YVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIK 159 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHCSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchHhHHhHHHH
Confidence 568899999999999999999997 999999999999999999999995 999999999753
No 16
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=99.43 E-value=4.8e-14 Score=89.29 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=56.0
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.+++++|.+.+||..+||++. |+++||+.++.+++++++++++|. |+|+|+||+.+.
T Consensus 113 ~~~~~l~~~A~~~~D~~t~~~l~~-~l~eq~ee~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 173 (176)
T 1vlg_A 113 QSIYNILELASEEKDHATVSFLKW-FVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLG 173 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccchhhhhHHhh
Confidence 567899999999999999999997 999999999999999999999995 899999999764
No 17
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=99.42 E-value=8e-14 Score=89.08 Aligned_cols=60 Identities=22% Similarity=0.412 Sum_probs=56.0
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+++.+++++|.+.+||.+++|++. |+.|||+.++.+++++++++|+|. |+|+|+||+.+.
T Consensus 113 ~~~~~l~~~A~~~~D~~t~~~l~~-~l~eqvEe~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 173 (181)
T 3bvf_A 113 ESINNIVDHAIKSKDHATFNFLQW-YVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVK 173 (181)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchHhHHhHHHH
Confidence 568899999999999999999996 999999999999999999999995 999999999753
No 18
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=99.29 E-value=1e-12 Score=82.39 Aligned_cols=60 Identities=33% Similarity=0.506 Sum_probs=55.6
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc-Cchhhhcccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKELK 62 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~-glg~ylfD~~~l 62 (63)
+.+.+++++|.+.+||..+||++. |+.+|++.++.+++++++++++|. |+|+|+||+.+.
T Consensus 99 ~~~~~~~~~A~~~~D~~t~~~l~~-~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~~d~~l~ 159 (174)
T 2jd6_0 99 KSIYELAALAEEEKDYSTRAFLEW-FINEQVEEEASVKKILDKLKFAKDSPQILFMLDKELS 159 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccchhhhhHHHh
Confidence 467889999999999999999996 999999999999999999999995 899999999754
No 19
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=98.77 E-value=3.8e-09 Score=67.23 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=52.0
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhccccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKEL 61 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~~~ 61 (63)
+.+.+++++|.+.+|+..+||++ .|+.+|++.++.+++++++++++|.+ .|.+|+++
T Consensus 104 ~~~~~l~~~A~~~~D~~t~~~l~-~~l~eqe~~~~~l~~~l~~l~~~g~~--l~~~d~~l 160 (189)
T 3oj5_A 104 DQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGAN--LFELENFV 160 (189)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch--HhHHHHHH
Confidence 46778999999999999999998 79999999999999999999999876 78888765
No 20
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=98.15 E-value=1.9e-06 Score=53.29 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=50.5
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhcccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKE 60 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~~ 60 (63)
+.+.++..+|.+.+||..++|++. |+.++.+.++.+.+++..+.+.| ++.|+|++.
T Consensus 101 ~~y~~l~~~a~~~~D~~t~~~l~~-~l~eEe~h~~~l~~~l~~i~~~g--~~~yl~~~~ 156 (174)
T 3qb9_A 101 NRLKPGIVMCREKQDTTSAVLLEK-IVADEEEHIDYLETQLELMDKLG--EELYSAQCV 156 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC--HHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHh
Confidence 456788899999999999999996 99999999999999999999884 899999875
No 21
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=98.08 E-value=2e-06 Score=52.10 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=49.6
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhcccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKE 60 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~~ 60 (63)
+.+.+++.+|.+.+||..++|++. |+.+|++.++.+..++.+++++ |.+.|++++.
T Consensus 99 ~~~~~~~~~a~~~~D~~t~~~l~~-~~~ee~~h~~~l~~~l~~l~~~--g~~~yl~~~~ 154 (161)
T 1jgc_A 99 KLYREARDYCAEVGDIVSKNIFES-LITDEEGHVDFLETQISLYDRL--GPQGFALLNA 154 (161)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHc
Confidence 356788899999999999999995 9999999999999999999998 5788888764
No 22
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=97.99 E-value=6e-06 Score=49.80 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=48.1
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhhccc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDK 59 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ylfD~ 59 (63)
+.+.+++++|.+.+||..++|++. |+.++++.++.+..++.+++++| ...|++-+
T Consensus 99 ~~y~~~~~~a~~~~D~~t~~~l~~-~~~ee~~h~~~l~~~l~~l~~~g--~~~y~~~~ 153 (158)
T 2y3q_A 99 KNLREAIGYADSVHDYVSRDMMIE-ILRDEEGHIDWLETELDLIQKMG--LQNYLQAQ 153 (158)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC--HHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHH
Confidence 356788899999999999999995 99999999999999999999984 66777654
No 23
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=97.90 E-value=1.1e-05 Score=49.66 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=46.2
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFV 56 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~yl 56 (63)
+++.+++++|.+.+||..++|++ .|+.+|++.+..+...+..++++| ...|+
T Consensus 99 ~~~~~~~~~a~~~~D~~t~~~l~-~il~eEeeH~~~l~~~L~~i~~~G--~~~yl 150 (159)
T 4am5_A 99 ALYQEGAAYAASVGDFPSKNLFE-ELMGDEEHHIDFLETQLDLVSKLG--LELYA 150 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC--HHHHH
Confidence 46778999999999999999999 599999999999999999999996 34454
No 24
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=97.71 E-value=3.3e-05 Score=47.05 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=42.4
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~ 50 (63)
+.+.+++++|.+. ||.+++|++ .|+.+|++.+..+..++.+++++|.
T Consensus 119 ~~~~~~~~~a~~~-D~~t~~~l~-~~~~ee~~h~~~l~~~l~~l~~~g~ 165 (170)
T 2vzb_A 119 LRYQEIANFTNGK-DYTTCDIAK-HILAEEEEHEQDLQDYLTDIARMKE 165 (170)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999777 999999997 7999999999999999999999984
No 25
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=97.66 E-value=4.8e-05 Score=46.26 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=34.4
Q ss_pred hhHHHHHhhhccCCCccccchhHH---------HhhHHHHHHHHHHH--Hhhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLES---------EFLQEQVDSIKSLA--DLLT 43 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~---------~fL~eQv~~Ik~l~--~~lt 43 (63)
+.+.+++.+|.+.+||..++|++. .++.++++.|+++| +|+.
T Consensus 99 ~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~i~~~g~~~yl~ 151 (161)
T 3gvy_A 99 TLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGSIGEQNYGM 151 (161)
T ss_dssp HHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 456788899999999999999998 77777777777777 6664
No 26
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=97.50 E-value=0.00011 Score=44.60 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=40.6
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG 49 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g 49 (63)
+.+.+++.+|.+.+||.++||++. ++.++.+.+..+..++..++++|
T Consensus 101 ~~~~~~~~~A~~~~D~~t~~~l~~-~~~eee~h~~~l~~~l~~i~~~g 147 (161)
T 3uoi_A 101 NRLKPGIVMCREKQDTTSAVLLEK-IVADEEEHIDYLETQLELMDKLG 147 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788999999999999999996 78888888888888888888885
No 27
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=97.42 E-value=7.7e-05 Score=46.88 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=32.3
Q ss_pred hhHHHHHhhhccCCCccccchhHH---------HhhHHHHHHHHHHH--Hhhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLES---------EFLQEQVDSIKSLA--DLLT 43 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~---------~fL~eQv~~Ik~l~--~~lt 43 (63)
+.+.+++.+|.+.+||..+||++. .+|+++++.|+++| +|+.
T Consensus 120 ~~y~~~i~~A~~~~D~~t~~~L~~il~eEe~h~~~l~~~l~~i~~~g~~~yl~ 172 (182)
T 3fvb_A 120 ASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLLAKIGGERYGQ 172 (182)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 456788889999999999999998 56666666666666 5554
No 28
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=97.34 E-value=0.00017 Score=43.53 Aligned_cols=47 Identities=30% Similarity=0.311 Sum_probs=39.7
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHH-HHHHHHHHHHhhhhhhhhc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQE-QVDSIKSLADLLTNVRRVG 49 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~e-Qv~~Ik~l~~~lt~L~r~g 49 (63)
+.+.+++.+|.+.+||..+||++. |+.+ +.+-+..+..++..++++|
T Consensus 98 ~~~~~~~~~a~~~~D~~t~~~l~~-~~~e~ee~h~~~l~~~l~~i~~~g 145 (154)
T 3r2k_A 98 AALAKGIALCEQHKDFVSRDILKA-QLADTEEDHAYWLEQQLGLIARMG 145 (154)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457789999999999999999996 7888 8888888888888888774
No 29
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=97.33 E-value=0.00023 Score=42.37 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=45.0
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFV 56 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~yl 56 (63)
+.+.+++.+|.+.+||..++|++. ++.++.+.+..+..++..++++| ...|+
T Consensus 99 ~~~~~~~~~a~~~~D~~t~~~l~~-~~~eee~h~~~l~~~l~~i~~~g--~~~y~ 150 (155)
T 2fkz_A 99 PDLKAAIAYCESVGDYASRELLED-ILESEEDHIDWLETQLDLIDKIG--LENYL 150 (155)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC--HHHHH
Confidence 456788999999999999999995 99999999999999999999985 44443
No 30
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=96.77 E-value=0.0015 Score=40.29 Aligned_cols=48 Identities=10% Similarity=0.317 Sum_probs=42.2
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhcc
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~ 50 (63)
..+.++..+|.+.+|+..++|++. ++.++.+.++.+..++..++++|.
T Consensus 104 ~~y~~l~~~a~~~~D~~t~~~l~~-~~~eEe~h~~~l~~~l~~l~~~g~ 151 (179)
T 1nfv_A 104 EAYSQFLKVCKEQGDIVTARLFER-IIEEEQAHLTYYENIGSHIKNLGD 151 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCH
Confidence 345678888989999999999996 999999999999999999999873
No 31
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=95.31 E-value=0.016 Score=33.94 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=35.7
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTN 44 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~ 44 (63)
+.+.++.++|.+.+||..++|++. ++.++.+.+..+..++.+
T Consensus 102 ~~~~~~~~~a~~~~D~~t~~~l~~-~~~eee~h~~~l~~~l~~ 143 (149)
T 2qqy_A 102 KRYEKRKEQAANLNMTELVVKLED-MIADETNHMEELDRLLND 143 (149)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 345678889998999999999996 899999999999887754
No 32
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=93.32 E-value=0.088 Score=30.93 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=33.5
Q ss_pred hhHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 2 q~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
..+.++.++|.+.+|+..+||++ .|+.+..+.+..+..++
T Consensus 102 ~~~~~~~~~a~~~~D~~t~~~l~-~~l~e~ek~~w~l~~~l 141 (142)
T 1ji5_A 102 VELKKGMEIAQNSDDEMTSDLLL-GIYTELEKHAWMLRAFL 141 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 35668889999999999999998 59999988888776654
No 33
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=86.63 E-value=0.72 Score=28.89 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTN 44 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~ 44 (63)
.+.++..+|.+. |+...|||+. |+.+|.+.+..+..++.+
T Consensus 130 ~~~~~i~~A~e~-D~~T~dlL~~-~l~e~ee~~~~l~~~L~~ 169 (188)
T 2clb_A 130 TWKEVCDMTYGK-DPRTYDLAQR-ILQEEIEHEAWFLELLYG 169 (188)
T ss_dssp HHHHHHHHHTTT-CHHHHHHHHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 456788889998 9999999985 999999999888887764
No 34
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=80.51 E-value=1.9 Score=25.33 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=30.9
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
.+.++..+|.+.+|+...||++. |+.+.-+.+-.+..++
T Consensus 110 ~~~~~i~~a~~~~D~~T~~ll~~-~l~e~ek~~w~l~~~l 148 (149)
T 1n1q_A 110 ELKVARDVADEADDEATADMLDA-IEAGLEKHVWMLEAFL 148 (149)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 45577788888899999999985 8888888777766554
No 35
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=79.94 E-value=2 Score=25.14 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=30.6
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
.+.++..+|.+.+|+...||++. |+.+.-+.+-.+..++
T Consensus 107 ~~~~~i~~a~~~~D~~T~~ll~~-~l~e~ek~~w~l~~~l 145 (146)
T 1jig_A 107 ELKEGMEVAGEAGDATSADMLLA-IHTTLEQHVWMLSAFL 145 (146)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 45577888888999999999985 8888877777666543
No 36
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=77.66 E-value=2.2 Score=25.51 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=32.3
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
.+.++.++|.+.+|+...||++. |+.+.-+.+-.+..++.
T Consensus 112 ~~~~~i~~a~~~~D~~T~~ll~~-~l~~~Ek~~w~l~~~l~ 151 (158)
T 2c41_A 112 EMHQDAEIATEAGDIGTADLYTR-LVQTHQKHRWFLKEFLA 151 (158)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 45678888999999999999985 88888888877776653
No 37
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=77.24 E-value=1.6 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=36.9
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhc
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG 49 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g 49 (63)
.+.++.++|.+.+|+...||++ .|+.+.-+.+..|..++.+.....
T Consensus 131 ~~~~~i~~a~~~~D~~T~~lL~-~~l~eeEkh~w~L~~~L~~~~l~~ 176 (192)
T 2vxx_A 131 VLRQQATQAESLGDRATAYLYD-QILLKTEERAYHIGHFLANDSLKV 176 (192)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHSSCCSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccCCcch
Confidence 4567788888889999999998 499998888888888877544443
No 38
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=71.28 E-value=3.3 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=30.8
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
.+.++..+|.+.+|+...||++. |+.+.-+.+-.|..++
T Consensus 109 ~~~~~i~~a~~~~D~~T~~ll~~-~l~e~Ek~~w~L~a~l 147 (156)
T 2d5k_A 109 QLENAIEIAGNAGDDVSEDMFIG-MQTSVDKHNWMFKSYL 147 (156)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 45577788888899999999985 8888888777766554
No 39
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=64.65 E-value=6.5 Score=24.18 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=31.6
Q ss_pred hHHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 3 ALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 3 ~Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
.+.++..+|.+.+|+-..|+++. ++.+.-+.|-.|..++.
T Consensus 132 ~~r~~i~~a~e~~D~~T~dll~~-~l~~~Ek~~w~L~a~l~ 171 (182)
T 1tjo_A 132 ATREHTELAENLGDHATAHMLRE-GLIELEDDAHHIEHYLE 171 (182)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 45577888999999999999985 88887777777766654
No 40
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=61.72 E-value=7 Score=24.52 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRR 47 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r 47 (63)
+-++-++|.+.+|....+|++. |+.+|+.-.+.+.+.+.+++.
T Consensus 102 y~~~~~~A~eegd~~~~~~f~~-~~~~E~ehe~~~~~~l~~l~~ 144 (191)
T 1lko_A 102 YPSFARIAREEGYEEIARVFAS-IAVAEEFHEKRFLDFARNIKE 144 (191)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Confidence 4567788999999999999995 999999999999988888775
No 41
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=61.57 E-value=3.2 Score=25.29 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=25.3
Q ss_pred ccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCchh
Q psy6334 12 SNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGI 54 (63)
Q Consensus 12 ~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg~ 54 (63)
.+++.--|-||++ |.+.|+++|. ++++-.+-||++.
T Consensus 10 ~~~g~Ftl~Df~~------Ql~qi~KMG~-l~~im~MiPGm~~ 45 (129)
T 1mfq_C 10 HKHGQFTLRDMYE------QFQNIMKMGP-FSQILGMIPGFGT 45 (129)
T ss_dssp -CCSSCCHHHHHH------HHHHTTSSHH-HHHTTTTCSCC--
T ss_pred cccCCcCHHHHHH------HHHHHHHcCC-HHHHHHHCCCCCc
Confidence 4456666777765 8999999998 7777777777764
No 42
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=61.11 E-value=4.5 Score=26.05 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.6
Q ss_pred HHhhHHHHHHHH-HHHH
Q psy6334 25 SEFLQEQVDSIK-SLAD 40 (63)
Q Consensus 25 ~~fL~eQv~~Ik-~l~~ 40 (63)
..||+||.+.|+ |||+
T Consensus 234 ey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 234 EYYLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 359999999995 5764
No 43
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=60.93 E-value=5.3 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchh
Q psy6334 29 QEQVDSIKSLADLLTNVRRVGEGLGI 54 (63)
Q Consensus 29 ~eQv~~Ik~l~~~lt~L~r~g~glg~ 54 (63)
.+|.+.|+++|. +.++-.+-||++.
T Consensus 8 ~~Ql~qi~kMG~-l~~i~~MiPG~~~ 32 (109)
T 1qb2_A 8 YEQFQNIMKMGP-FSQILGMIPGFGT 32 (109)
T ss_dssp HHHHHHHHHTHH-HHHHHHHSTTSCT
T ss_pred HHHHHHHHHcCC-HHHHHHHCCCCcc
Confidence 348999999998 6777777777664
No 44
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=57.38 E-value=14 Score=21.64 Aligned_cols=42 Identities=7% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVR 46 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~ 46 (63)
+.++-++|.+.+|+...++++. ++.++..-++.+...+.++.
T Consensus 100 y~~~~~~A~~egd~~~~~~f~~-i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 100 YPGFAKVAREEGFPEVAEWFET-LARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999995 88998888888777776554
No 45
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=48.69 E-value=17 Score=21.52 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+...+|.+.+||-..|.++. ++.+.-+.+-.|..++.
T Consensus 109 ~r~~i~~a~~~~D~~T~dll~~-~l~~~Ek~~w~L~a~l~ 147 (152)
T 3kwo_A 109 FKKLNEAAEKESDTTTAAFAQE-NIAKYEKSLWMIGATLQ 147 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4566677888889988888874 66666666666655554
No 46
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=46.08 E-value=13 Score=23.52 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=32.0
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRV 48 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~ 48 (63)
+.+..++|.+.+|+-..|.++. ++.+.-+.+-.|..++....|+
T Consensus 148 ~re~i~~aee~~D~~T~dll~~-il~~~Ekh~w~L~a~L~~~~~~ 191 (199)
T 2xgw_A 148 YQVGLDITDEEGDAGTNDLFTA-AKTEAEKTIWMLQAERGQGPAL 191 (199)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 4466677888889999988874 7777777777777766655554
No 47
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=40.83 E-value=28 Score=20.75 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.5
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
+.+..++|.+.+||-..|.++. ++.+.-+.|--|..++
T Consensus 121 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a~l 158 (162)
T 1o9r_A 121 IRKAIDDSDEAGDPTTADIFTA-ASRDLDKSLWFLEAHV 158 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4466777888889888888875 6776666665555443
No 48
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=39.71 E-value=13 Score=19.64 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchh
Q psy6334 29 QEQVDSIKSLADLLTNVRRVGEGLGI 54 (63)
Q Consensus 29 ~eQv~~Ik~l~~~lt~L~r~g~glg~ 54 (63)
.||=+.+.+++..+++|+.+|.++|.
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~ 31 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGK 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 35667788999999999999865553
No 49
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=37.51 E-value=21 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhhhc---------------cCchhhhcccc
Q psy6334 36 KSLADLLTNVRRVG---------------EGLGIFVFDKE 60 (63)
Q Consensus 36 k~l~~~lt~L~r~g---------------~glg~ylfD~~ 60 (63)
++|-.+|..+++-| +|||++.|||+
T Consensus 199 ~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkL 238 (382)
T 1r53_A 199 GLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKL 238 (382)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccc
Confidence 45555666666554 29999999985
No 50
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=37.24 E-value=5.2 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHhhhhhhhhccCch
Q psy6334 30 EQVDSIKSLADLLTNVRRVGEGLG 53 (63)
Q Consensus 30 eQv~~Ik~l~~~lt~L~r~g~glg 53 (63)
+|.+.|+++|. +.++-.+-||++
T Consensus 9 ~Ql~qi~kMG~-l~~i~~miPG~~ 31 (105)
T 1hq1_A 9 EQLRQMKNMGG-MASLMGKLPGMG 31 (105)
T ss_dssp HHHTC-------------------
T ss_pred HHHHHHHHcCC-HHHHHHHCCCCC
Confidence 48999999997 666666656654
No 51
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=36.52 E-value=42 Score=19.88 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHH
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLAD 40 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~ 40 (63)
+.+..++|.+.+|+-..|.++. ++.+.-+.|-.|..
T Consensus 117 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a 152 (156)
T 2fjc_A 117 FSQTQVLAAESGDAVTDGIITD-ILRTLGKAIWMLGA 152 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4456677777788888887764 56655555544433
No 52
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=36.43 E-value=21 Score=17.58 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHHH
Q psy6334 24 ESEFLQEQVDSIKSLA 39 (63)
Q Consensus 24 e~~fL~eQv~~Ik~l~ 39 (63)
|..| ++|++.+.+||
T Consensus 4 ~~~~-~~~i~~L~~MG 18 (46)
T 2bwb_A 4 EERY-EHQLRQLNDMG 18 (46)
T ss_dssp HHHT-HHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHHcC
Confidence 3455 88999999998
No 53
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=35.17 E-value=40 Score=18.46 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=26.3
Q ss_pred hhhccCCCccccchhHHHhhHHHH-----HHHHHHHHhhhhhh
Q psy6334 9 NLASNHKDANFTDFLESEFLQEQV-----DSIKSLADLLTNVR 46 (63)
Q Consensus 9 ~lA~~~~D~~l~dFle~~fL~eQv-----~~Ik~l~~~lt~L~ 46 (63)
.+..-..-||..+|++. ++++-+ ..||++.-.++.+.
T Consensus 26 kl~~~~ks~~y~~f~~~-lir~l~~~L~~~dikkv~s~l~~l~ 67 (80)
T 3bpj_A 26 KITQYEKSLYYASFLEV-LVRDVCISLEIDDLKKITNSLTVLC 67 (80)
T ss_dssp HHGGGTTSTTHHHHHHH-HHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhccCChhHHHHHHH-HHHHHHccCCHHHHHHHHHHHHHHH
Confidence 35555677888989985 777654 34788888887764
No 54
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=33.24 E-value=50 Score=19.90 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=20.3
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHH
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKS 37 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~ 37 (63)
+.+..++|.+.+||-..|.++. ++.+.-+.|--
T Consensus 126 ~r~~i~~aee~~D~~T~dll~~-il~~~Ek~~Wm 158 (164)
T 4eve_A 126 FKELSNTAEKEGDKVTVTYADD-QLAKLQKSIWM 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 4455667777788877777764 45554444433
No 55
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=32.91 E-value=49 Score=19.49 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=21.5
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHH
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSL 38 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l 38 (63)
+.+..++|.+.+||-..|.++. ++.+.-+.|--+
T Consensus 115 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L 148 (153)
T 2chp_A 115 SKFVIGLAEENQDNATADLFVG-LIEEVEKQVWML 148 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 4456677777788888877764 555544444433
No 56
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=32.43 E-value=41 Score=20.90 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=30.7
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+...+|.+.+||-..|.+.. ++.+.-|.|-.|..++.
T Consensus 128 ~r~~i~~a~e~~D~~Tadll~~-~~~~~EK~~WmL~a~L~ 166 (179)
T 1zuj_A 128 IGRAIKLAQKEEKFSLELAIRK-LYGYNLSIIPYFAGELG 166 (179)
T ss_dssp HHHHTHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4467778899999999999964 78888888877777665
No 57
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=32.24 E-value=47 Score=20.72 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+...+|.+.+|+-..|.+.. ++.+.=|.|-.|..++.
T Consensus 129 ~r~~i~~A~e~~D~~Tadll~~-~~~~~EK~~WmL~a~L~ 167 (182)
T 1zs3_A 129 ITRAIKLANKEEKFALAAGVVE-LYGYNLQVIRNLAGDLG 167 (182)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4467788999999999999964 77887788777777664
No 58
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=32.15 E-value=38 Score=20.13 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=19.9
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHH
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSL 38 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l 38 (63)
+.+...+|.+.+|+-..|.++. ++.+.-+.+--|
T Consensus 121 ~r~~i~~ae~~~D~~T~dll~~-~l~~~Ek~~WmL 154 (159)
T 3iq1_A 121 QRDILELAGETGDEGTSALMSD-YIREQEKLVWML 154 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhHcCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566777777777777664 455544444333
No 59
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=32.14 E-value=22 Score=20.13 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=28.0
Q ss_pred CCCccccchhHHH---hhHHHHHH-HHHHHHhhhhhhhhc
Q psy6334 14 HKDANFTDFLESE---FLQEQVDS-IKSLADLLTNVRRVG 49 (63)
Q Consensus 14 ~~D~~l~dFle~~---fL~eQv~~-Ik~l~~~lt~L~r~g 49 (63)
-+||.+..||+.| .=++.|+. +-+|-.|+.+-+++.
T Consensus 29 l~dP~V~~Fl~~h~~~l~~~~I~~s~~kL~ey~~e~~~c~ 68 (106)
T 2k7r_A 29 MKDQDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCS 68 (106)
T ss_dssp TTCHHHHHHHHHSTTTCCHHHHHHTHHHHHHHHHSCSSCT
T ss_pred HcCHHHHHHHHHChhhCCHHHHHhhHHHHHHHHHHHHhhc
Confidence 4899999999987 44555555 888999999887663
No 60
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=31.38 E-value=41 Score=18.71 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhhhhh
Q psy6334 28 LQEQVDSIKSLADLLTNV 45 (63)
Q Consensus 28 L~eQv~~Ik~l~~~lt~L 45 (63)
|..+=..||+|-|||-+|
T Consensus 30 l~~k~~~v~eLEdYID~L 47 (75)
T 3tso_C 30 LRRKDTHIRELEDYIDNL 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666789999999886
No 61
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=31.30 E-value=32 Score=20.72 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=26.3
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+...+|.+.+||-..|.++. ++.+.-+.|-.|..++.
T Consensus 122 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a~L~ 160 (165)
T 2cf7_A 122 FQKGFDVSDEEGDSVTNDIFNV-AKASIEKHIWMLQAELG 160 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4456677777788888888875 56666666665555543
No 62
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=30.40 E-value=62 Score=19.22 Aligned_cols=36 Identities=11% Similarity=-0.139 Sum_probs=23.0
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADL 41 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~ 41 (63)
+.+.. +|.+.+||-..|.++. ++.+.-+.+-.|..+
T Consensus 123 ~r~~i-~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a~ 158 (161)
T 2yjk_A 123 LQAAI-DGLDEVDLTSQDVAIE-IKRGVDKDRWFLLAH 158 (161)
T ss_dssp HHHHH-HHHTTTCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHH-HhcccCCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44566 7777788888888764 566555555444433
No 63
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.14 E-value=35 Score=17.66 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=13.5
Q ss_pred hHHHhhHHHHHHHHHHH
Q psy6334 23 LESEFLQEQVDSIKSLA 39 (63)
Q Consensus 23 le~~fL~eQv~~Ik~l~ 39 (63)
-|+.| ++|++.+++||
T Consensus 13 pe~~~-~~qi~~L~~MG 28 (58)
T 1wr1_B 13 PEERY-EHQLRQLNDMG 28 (58)
T ss_dssp HHHHT-HHHHHHHHHHT
T ss_pred hHHHH-HHHHHHHHHcC
Confidence 46666 88999999999
No 64
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=29.77 E-value=40 Score=19.92 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+..++|.+.+||-..|.++. ++.+.-+.|-.|..++.
T Consensus 113 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a~l~ 151 (156)
T 2bk6_A 113 YKQGIELTDKEGDDVTNDMLIA-FKASIDKHIWMFKAFLG 151 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4456677777788888888864 66666666655555443
No 65
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=29.57 E-value=27 Score=24.75 Aligned_cols=10 Identities=50% Similarity=0.886 Sum_probs=9.2
Q ss_pred Cchhhhcccc
Q psy6334 51 GLGIFVFDKE 60 (63)
Q Consensus 51 glg~ylfD~~ 60 (63)
|||++.|||+
T Consensus 217 GLG~pvfdkL 226 (370)
T 1sq1_A 217 GLGEVLYDKL 226 (370)
T ss_dssp SCSBTTTBCH
T ss_pred CCCCcccccc
Confidence 9999999985
No 66
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=29.55 E-value=64 Score=19.87 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHhhhccC-CCccccchhHHHhhHHHHHHHHHHHHhhhhhh
Q psy6334 6 ELHNLASNH-KDANFTDFLESEFLQEQVDSIKSLADLLTNVR 46 (63)
Q Consensus 6 ~Lh~lA~~~-~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~ 46 (63)
+.-++|.++ .||.+..|=+ .....|-+.|.+|..+++...
T Consensus 25 ~ma~lal~~~~d~~Vk~lA~-~Ii~~q~~ei~~m~~~l~~~g 65 (179)
T 2qf9_A 25 EMSYIVRDRTDDEEVRRLAY-DIAQTQANQRGMMIGWLDLWA 65 (179)
T ss_dssp HHHHHHHTTCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 455666544 5999998877 589999999999999888764
No 67
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=29.26 E-value=34 Score=19.68 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhhhhhccCchhh
Q psy6334 32 VDSIKSLADLLTNVRRVGEGLGIF 55 (63)
Q Consensus 32 v~~Ik~l~~~lt~L~r~g~glg~y 55 (63)
-+.||+++..++.+... +|++|
T Consensus 31 ~qvikEIs~Kv~~Iqn~--~L~E~ 52 (92)
T 1x4t_A 31 RQIIGEISKKVAQIQNA--GLGEF 52 (92)
T ss_dssp HHHHHHHHHHHHHHHHC--CSCHH
T ss_pred HHHHHHHHHHHHHhhCC--CCCHH
Confidence 34588888888887774 66665
No 68
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.53 E-value=47 Score=20.93 Aligned_cols=43 Identities=2% Similarity=-0.025 Sum_probs=36.3
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRR 47 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r 47 (63)
.-++-++|...+|....+|++. ++.+|..-.+.+...+.+++.
T Consensus 123 y~~~a~~A~eEgd~~~a~~f~~-i~~~E~~H~~~~~~ll~~l~~ 165 (202)
T 1yuz_A 123 YPAFIRKAQEEGNSKAVHVFTR-AKLAESVHAERYLAAYNDIDA 165 (202)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888999999999995 999999999998888887764
No 69
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=27.66 E-value=43 Score=20.02 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcc
Q psy6334 29 QEQVDSIKSLADLLTNVRRVGE 50 (63)
Q Consensus 29 ~eQv~~Ik~l~~~lt~L~r~g~ 50 (63)
.||.+.+||+-.++++|.+++.
T Consensus 13 ~e~~~nvkKck~FL~tLi~las 34 (114)
T 2p6v_A 13 TETMENVXXCXNFLSTLIXLAS 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999984
No 70
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=27.44 E-value=45 Score=20.27 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
+.+...+|.+.+|+-..|.++. ++.+.-+.|-.|..++
T Consensus 132 ~r~~i~~ae~~~D~~T~dll~~-il~~~Ek~~w~L~a~L 169 (175)
T 2wlu_A 132 YQVGLDITDEEGDAGTNDLFTA-AKTEAEKTIWMLQAER 169 (175)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4456667777788888888764 6666666665555444
No 71
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=26.66 E-value=71 Score=20.18 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=24.6
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLL 42 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~l 42 (63)
+.+...+|.+.+|+-..|.++. ++.+.-+.|-.|..++
T Consensus 164 ~re~i~~aee~~D~~T~dLl~~-il~~~EkhiW~L~a~L 201 (207)
T 2c2u_A 164 YRDDSQACDEANDPVTADMYNG-YAATIDKIRWMLQAIM 201 (207)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4466677788888888888764 6666555555544443
No 72
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=25.90 E-value=28 Score=21.91 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhhhhc-cCc-hhhhcccc
Q psy6334 34 SIKSLADLLTNVRRVG-EGL-GIFVFDKE 60 (63)
Q Consensus 34 ~Ik~l~~~lt~L~r~g-~gl-g~ylfD~~ 60 (63)
.++.++..+. ++. +.| ++|+||++
T Consensus 17 ~~~~l~rll~---k~~~~~w~~vy~~dre 42 (162)
T 3eea_A 17 VIKDLSRLLR---KLVKTRWIAVYFFDRE 42 (162)
T ss_dssp HHHHHHHHHH---HHSCCSEEEEEEECC-
T ss_pred HHHHHHHHHH---HHhCCceEEEEEeehh
Confidence 3444444443 332 354 58999986
No 73
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=25.72 E-value=64 Score=18.15 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhh
Q psy6334 27 FLQEQVDSIKSLADLLTNVRR 47 (63)
Q Consensus 27 fL~eQv~~Ik~l~~~lt~L~r 47 (63)
=+.++|..+|+.=+-++.++|
T Consensus 56 QideeV~~LKe~IdaLNK~Kk 76 (83)
T 1zke_A 56 QLSEEVERLKELINALNKIKK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999998888888777
No 74
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.46 E-value=46 Score=17.88 Aligned_cols=25 Identities=12% Similarity=0.428 Sum_probs=17.8
Q ss_pred hHHHhhHHHHHHHHHHH--Hhhhhhhhh
Q psy6334 23 LESEFLQEQVDSIKSLA--DLLTNVRRV 48 (63)
Q Consensus 23 le~~fL~eQv~~Ik~l~--~~lt~L~r~ 48 (63)
-|..| .+|++.++.|| +.-.+++-+
T Consensus 15 pe~~y-~~ql~qL~~MGF~d~~an~~AL 41 (67)
T 2dna_A 15 PEVRF-SKEMECLQAMGFVNYNANLQAL 41 (67)
T ss_dssp HHHHT-HHHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHcCCCcHHHHHHHH
Confidence 47777 88999999999 443444444
No 75
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=24.39 E-value=37 Score=19.98 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADL 41 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~ 41 (63)
+.+..++|.+.+||-..|.++. ++.+.-+.|-.|..+
T Consensus 110 ~r~~i~~a~~~~D~~T~dll~~-il~~~Ek~~w~L~a~ 146 (151)
T 2pyb_A 110 IFGMRKLIDTAGDYGTANIMDD-IMSDLEKHLWMHKAL 146 (151)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4466677777788888888764 566555555444433
No 76
>1tt8_A Chorismate-pyruvate lyase; NEW fold, ubiquinone pathway, 123654 antiparallel sheet; HET: PHB; 1.00A {Escherichia coli} SCOP: d.190.1.1 PDB: 1fw9_A* 2ahc_A* 1g81_A* 1xlr_A* 1jd3_A* 1g1b_A*
Probab=23.71 E-value=25 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=18.1
Q ss_pred HHHHhhhhhhhhcc-Cchhhhcccc
Q psy6334 37 SLADLLTNVRRVGE-GLGIFVFDKE 60 (63)
Q Consensus 37 ~l~~~lt~L~r~g~-glg~ylfD~~ 60 (63)
.+.+....+.++|. .+|++||...
T Consensus 98 ~l~~~~~~l~~lg~~PLG~~LF~~~ 122 (164)
T 1tt8_A 98 TLSGPELALQKLGKTPLGRYLFTSS 122 (164)
T ss_dssp GCSGGGGGGGSCTTSCCCGGGCTTC
T ss_pred HhCchhHHHHhcCCCcHHHHHhcCC
Confidence 34456677888886 9999999863
No 77
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=22.90 E-value=80 Score=18.60 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=29.7
Q ss_pred hhccCCCccccchhHHHhhHHHHHHHHHHHHhhhhhhhh
Q psy6334 10 LASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRV 48 (63)
Q Consensus 10 lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~ 48 (63)
.|.+-.||.+..++.. +..+--..+.+|..+|.++-.-
T Consensus 33 aae~~~d~~lk~~f~~-~a~~~~~~~~eL~~~i~~lGg~ 70 (153)
T 4etr_A 33 CAEDLRDPQLKAAMLE-QSRDCAAAADELERIVLELGGK 70 (153)
T ss_dssp HHHTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 3455689999999885 7888888899998888876543
No 78
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.72 E-value=34 Score=18.49 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCccccchhHHHhhHHHHHH------HHHHHHhhhhhhhh
Q psy6334 15 KDANFTDFLESEFLQEQVDS------IKSLADLLTNVRRV 48 (63)
Q Consensus 15 ~D~~l~dFle~~fL~eQv~~------Ik~l~~~lt~L~r~ 48 (63)
.|.---||=++.-+-+++-. -.++++|+|.+-+.
T Consensus 21 ~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~ 60 (67)
T 3j20_S 21 PNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRM 60 (67)
T ss_dssp GGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHH
Confidence 33344578777665555443 36899999987654
No 79
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=22.18 E-value=1.2e+02 Score=18.56 Aligned_cols=39 Identities=13% Similarity=-0.081 Sum_probs=27.9
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTN 44 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~ 44 (63)
+.+...+|.+. |+-..|.++. ++.+.-+.|-.|..++.+
T Consensus 120 ~r~~i~~ae~~-D~~T~dll~~-il~~~Ek~~w~L~a~L~~ 158 (183)
T 2yw6_A 120 TRKSIEKLEDL-DLVSQDLLIA-HAGELEKFQWFVRAHLES 158 (183)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcc-CHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 45667788887 9988888874 677767777666665543
No 80
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=21.94 E-value=96 Score=19.70 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=26.5
Q ss_pred HHHHHhhhccCCCccccchhHHHhhHHHHHHHHHHHHhhh
Q psy6334 4 LLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLT 43 (63)
Q Consensus 4 Ll~Lh~lA~~~~D~~l~dFle~~fL~eQv~~Ik~l~~~lt 43 (63)
+.+..++|.+. |+-..|.++. ++.+.-+.|-.|..++.
T Consensus 151 ~re~i~~aee~-D~~T~dLl~~-il~~~EkhiW~L~a~L~ 188 (211)
T 2c2j_A 151 IHQRVGDVEKV-DPTTANLLQE-VEHIIEKYQWQMRAFLQ 188 (211)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHH-HHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcc-CHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 45677778887 8888888874 66666666666655544
No 81
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.56 E-value=39 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.4
Q ss_pred HHHhhHHHHHHHHHHH
Q psy6334 24 ESEFLQEQVDSIKSLA 39 (63)
Q Consensus 24 e~~fL~eQv~~Ik~l~ 39 (63)
+..| ++||+.|++||
T Consensus 26 e~~y-e~qi~qL~eMG 40 (74)
T 1vej_A 26 EGRY-QQELEELKALG 40 (74)
T ss_dssp TTTS-HHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHcC
Confidence 4455 88999999999
No 82
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=21.19 E-value=75 Score=14.58 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchh
Q psy6334 29 QEQVDSIKSLADLLTNVRRVGEGLGI 54 (63)
Q Consensus 29 ~eQv~~Ik~l~~~lt~L~r~g~glg~ 54 (63)
++||+.+=+-+--..||.++=.|+..
T Consensus 6 ~~QV~~LI~~At~~~NL~~my~GW~p 31 (33)
T 1w1n_A 6 PEQVDKLIQQATSIERLCQHYIGWCP 31 (33)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCSCCT
T ss_pred HHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 46777654445456788877555543
No 83
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.05 E-value=26 Score=24.86 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=13.9
Q ss_pred CCccccchhHHHhhHHHHHHHHHHHHhhhhhhhhccCch
Q psy6334 15 KDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLG 53 (63)
Q Consensus 15 ~D~~l~dFle~~fL~eQv~~Ik~l~~~lt~L~r~g~glg 53 (63)
+.-.|-||+ +|.+.|++||. ++++-.+-||++
T Consensus 326 ~~f~l~d~~------~q~~~~~kmg~-~~~~~~m~pg~~ 357 (443)
T 3dm5_A 326 GKFTLKDMY------AQLEAMRKMGP-LKQILRMIPGLG 357 (443)
T ss_dssp TCCCHHHHH------HHHHHHHTTCC-------------
T ss_pred CCcCHHHHH------HHHHHHHhccC-HHHHHHHCCCch
Confidence 344555554 48999999997 666666656665
No 84
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=20.76 E-value=43 Score=19.64 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=13.4
Q ss_pred HhhHHHHHHHHHHHH
Q psy6334 26 EFLQEQVDSIKSLAD 40 (63)
Q Consensus 26 ~fL~eQv~~Ik~l~~ 40 (63)
||-.+|-+.|++||.
T Consensus 68 ~ft~~qe~li~~L~~ 82 (103)
T 2bl8_A 68 RFTEYQEELIRNLSE 82 (103)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 688899999999987
No 85
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=20.49 E-value=46 Score=23.73 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=16.9
Q ss_pred HHHHHHhhhhhhhhc---------------cCchhhhc--ccc
Q psy6334 35 IKSLADLLTNVRRVG---------------EGLGIFVF--DKE 60 (63)
Q Consensus 35 Ik~l~~~lt~L~r~g---------------~glg~ylf--D~~ 60 (63)
.++|-.+|..+++-| +|||++.| ||+
T Consensus 205 ~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GLG~pvf~d~kL 247 (398)
T 4ecd_A 205 EVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVESDRRL 247 (398)
T ss_dssp HHHHHHHHHTC--CGGGCCEEEEEEEESCCSCCBCSSSSTTSH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCCCCCcccccCh
Confidence 455666666666654 29999999 875
No 86
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.18 E-value=49 Score=19.78 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.4
Q ss_pred hhhccCCCccccchhHHHhhHHHHH
Q psy6334 9 NLASNHKDANFTDFLESEFLQEQVD 33 (63)
Q Consensus 9 ~lA~~~~D~~l~dFle~~fL~eQv~ 33 (63)
++|. ++||.++.|--+ ++||+.
T Consensus 94 ~la~-sg~p~~q~Fa~g--~req~~ 115 (116)
T 2p58_C 94 RLAR-SQDPRIQTFVNG--MREQLK 115 (116)
T ss_dssp HHTT-CCCHHHHHHHHH--HHHHHC
T ss_pred HHHh-CCCHHHHHHHHH--HHHHhc
Confidence 4444 499999999886 577763
No 87
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.12 E-value=51 Score=16.40 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=11.8
Q ss_pred HHHhhHHHHHHHHHHH
Q psy6334 24 ESEFLQEQVDSIKSLA 39 (63)
Q Consensus 24 e~~fL~eQv~~Ik~l~ 39 (63)
+..| ++||+.+.+||
T Consensus 8 e~~~-~~~l~~L~~MG 22 (53)
T 2knz_A 8 EVRF-QQQLEQLNSMG 22 (53)
T ss_dssp HHHH-HHHHHHHHTTT
T ss_pred hhHH-HHHHHHHHHcC
Confidence 4455 77899999998
Done!