RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6334
(63 letters)
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 85.5 bits (212), Expect = 5e-23
Identities = 25/60 (41%), Positives = 44/60 (73%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKEL 61
+ LL LH++A+ + D DF+E+E+L EQV++IK +++ + +RRVG+G G++ FD+ L
Sbjct: 145 EKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQML 204
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 84.7 bits (210), Expect = 8e-23
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKEL 61
Q L L +A HKDA DF+E L EQVD++K A ++ +RRVG+G+G+++ D+EL
Sbjct: 140 QKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYVSQLRRVGKGVGVYLLDQEL 199
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 80.2 bits (198), Expect = 4e-21
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFD 58
QALL+LH L S D + DFLE+ FL E+V IK + D LTN+ R+G GLG ++
Sbjct: 109 QALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSS 168
Query: 59 KEL 61
K
Sbjct: 169 KGS 171
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 79.3 bits (196), Expect = 6e-21
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFD 58
QALL+LH +A++ D + TDFLES +L E V++IK L D +T+++++ G+ ++F+
Sbjct: 109 QALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFN 168
Query: 59 KEL 61
K
Sbjct: 169 KHT 171
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 79.3 bits (196), Expect = 6e-21
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFD 58
Q+LLELH LA++ D + DF+E+ +L EQV +IK L D +TN+R++G GL ++FD
Sbjct: 113 QSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFD 172
Query: 59 KEL 61
K
Sbjct: 173 KHT 175
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A
3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Length = 176
Score = 78.9 bits (195), Expect = 9e-21
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG---EGLGIFVFD 58
QALL+LH LA++ D + DFLESE+L+EQV IK + D +TN++R+G G+G ++FD
Sbjct: 109 QALLDLHKLATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFD 168
Query: 59 KEL 61
K
Sbjct: 169 KHS 171
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X
3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 78.2 bits (193), Expect = 1e-20
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG---EGLGIFVFD 58
QALL+LH L S D + DFLES FL E+V IK + D LTN++R+ GLG ++F+
Sbjct: 108 QALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFE 167
Query: 59 KEL 61
+
Sbjct: 168 RLT 170
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 73.2 bits (180), Expect = 1e-18
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 2 QALLELHNLASNHKD---ANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIF 55
+++ + + + + D+L +FL+EQ + LA + ++++ + LG F
Sbjct: 121 KSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEF 180
Query: 56 VFDKEL 61
+FDK+L
Sbjct: 181 IFDKKL 186
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 71.5 bits (176), Expect = 5e-18
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
+++ EL LA KD + FLE F+ EQV+ S+ +L ++ + +F+ DKE
Sbjct: 99 KSIYELAALAEEEKDYSTRAFLEW-FINEQVEEEASVKKILDKLKFAKDSPQILFMLDKE 157
Query: 61 LKS 63
L +
Sbjct: 158 LSA 160
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 70.7 bits (174), Expect = 1e-17
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
+ + EL +A KD +FL+ ++ EQV+ S D++ +R +GE + DKE
Sbjct: 101 KRIHELVEMAMQEKDFATYNFLQW-YVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKE 159
Query: 61 LKS 63
L
Sbjct: 160 LSL 162
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 70.0 bits (172), Expect = 2e-17
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
Q++ + LAS KD FL+ F+ EQV+ + ++L + + IF D+
Sbjct: 113 QSIYNILELASEEKDHATVSFLKW-FVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRY 171
Query: 61 L 61
L
Sbjct: 172 L 172
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 70.0 bits (172), Expect = 3e-17
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
Q + +L ++A +D + +FL+ ++ EQ + K +L + VGE G +F DK+
Sbjct: 108 QQINKLAHVAFTSQDYSTFNFLQW-YVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKD 166
Query: 61 LKS 63
L +
Sbjct: 167 LAA 169
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 69.6 bits (171), Expect = 3e-17
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
+++ L HKD + +FL+ ++ EQ + ++ ++ +GE G G+++ D+
Sbjct: 99 KSINTLVEHMLTHKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQY 157
Query: 61 LKS 63
+K+
Sbjct: 158 IKN 160
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 69.2 bits (170), Expect = 5e-17
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGLGIFVFDKEL 61
+ L +A + D F++ FLQEQ++ + +A L+ R G L F + +
Sbjct: 104 DQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGANL--FELENFV 160
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 68.4 bits (168), Expect = 7e-17
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
Q + EL + A ++D +FL+ ++ EQ + K ++ + G+ G G++ DKE
Sbjct: 99 QKINELAHAAMTNQDYPTFNFLQW-YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKE 157
Query: 61 LKS 63
L +
Sbjct: 158 LST 160
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 69.3 bits (169), Expect = 8e-17
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 1 MQALLELHNLASNH----KDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE------ 50
+ +H A+ + D +LE EF+++ + I++LA +++++
Sbjct: 137 AERAFYIHREATRNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHD 196
Query: 51 -GLGIFVFDKELK 62
L ++VFD+ L+
Sbjct: 197 LSLALYVFDEYLQ 209
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 67.8 bits (166), Expect = 2e-16
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
+++ + + A KD +FL+ ++ EQ + D+L + +G G+++ D+
Sbjct: 113 ESINNIVDHAIKSKDHATFNFLQW-YVAEQHEEEVLFKDILDKIELIGNENHGLYLADQY 171
Query: 61 LKS 63
+K
Sbjct: 172 VKG 174
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 67.2 bits (165), Expect = 2e-16
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGEGL-GIFVFDKE 60
++LL L AS D FL F +QV+ + +L V + D
Sbjct: 100 RSLLNLAEAASTCHDFAVMAFLN-PFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVV 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 0.74
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 8 HNLASNHKDANF---TDFLESEFLQEQVDSIKSLADLLTNVRRV 48
+ + + D +S +E++D I D ++ R+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.361
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 893,921
Number of extensions: 38039
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 21
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)