RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6334
(63 letters)
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 173
Score = 67.3 bits (164), Expect = 9e-17
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG---EGLGIFVFD 58
QALL+LH + S+ D + DFLE+E+ +EQV SIK L D +TN++R+G G+G ++FD
Sbjct: 108 QALLDLHKVGSDKVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFD 167
Query: 59 KEL 61
K
Sbjct: 168 KHT 170
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),
mitocondial isoform [TaxId: 9606]}
Length = 171
Score = 65.1 bits (158), Expect = 6e-16
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVF 57
Q+LLELH LAS+ D + DFLE+ +L EQV SIK L D + N+ ++G GL ++F
Sbjct: 106 NQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLF 165
Query: 58 DKEL 61
D
Sbjct: 166 DTHT 169
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 64.7 bits (157), Expect = 9e-16
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE---GLGIFVFD 58
QALL+LH +A++ D + TDFLES +L E V++IK L D +T+++++ G+ ++F+
Sbjct: 107 QALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFN 166
Query: 59 KEL 61
K
Sbjct: 167 KHT 169
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 64.6 bits (157), Expect = 2e-15
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 2 QALLELHNLASNH----KDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG-------E 50
+ +H A+ + D +LE EF+++ + I++LA +++++
Sbjct: 126 ERAFYIHREATRNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDL 185
Query: 51 GLGIFVFDKELK 62
L ++VFD+ L+
Sbjct: 186 SLALYVFDEYLQ 197
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), H chain [TaxId: 7111]}
Length = 191
Score = 64.2 bits (156), Expect = 2e-15
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 2 QALLELHNLAS---NHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG---EGLGIF 55
+++ + D + D+L +FL+EQ + LA + ++++ E LG F
Sbjct: 121 KSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEF 180
Query: 56 VFDKEL 61
+FDK+L
Sbjct: 181 IFDKKL 186
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 63.5 bits (154), Expect = 3e-15
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVG----------- 49
QALL+LH L S D + DFLES +L ++V IK + + LTN+RRV
Sbjct: 106 NQALLDLHALGSARADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRVAGPQPAQTGAPQ 165
Query: 50 EGLGIFVFDKEL 61
LG ++F++
Sbjct: 166 GSLGEYLFERLT 177
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 58.8 bits (142), Expect = 1e-13
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDK 59
+++ L HKD + +FL+ ++ EQ + ++ ++ +GE G G+++ D+
Sbjct: 98 TKSINTLVEHMLTHKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQ 156
Query: 60 ELKS 63
+K+
Sbjct: 157 YIKN 160
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 162
Score = 58.0 bits (140), Expect = 3e-13
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDK 59
+ + EL +A KD +FL+ ++ EQV+ S D++ +R +GE + DK
Sbjct: 98 TKRIHELVEMAMQEKDFATYNFLQ-WYVAEQVEEEASALDIVEKLRLIGEDKRALLFLDK 156
Query: 60 EL 61
EL
Sbjct: 157 EL 158
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
2336]}
Length = 164
Score = 55.8 bits (134), Expect = 2e-12
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
Q++ + LAS KD FL+ F+ EQV+ + ++L + + IF D+
Sbjct: 101 QSIYNILELASEEKDHATVSFLK-WFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRY 159
Query: 61 LKS 63
L
Sbjct: 160 LGQ 162
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 55.7 bits (134), Expect = 2e-12
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE-GLGIFVFDKE 60
Q + EL + A ++D +FL+ ++ EQ + K ++ + G+ G G++ DKE
Sbjct: 98 QKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKE 156
Query: 61 LKS 63
L +
Sbjct: 157 LST 159
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 35.0 bits (80), Expect = 1e-04
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50
+ L E A + D D + E L+++ I L L ++++G
Sbjct: 98 AKNLREAIGYADSVHDYVSRDMMI-EILRDEEGHIDWLETELDLIQKMGL 146
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1)
{Azotobacter vinelandii [TaxId: 354]}
Length = 154
Score = 34.3 bits (78), Expect = 2e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50
L + D + LE + L+ + D I L L + ++G
Sbjct: 99 PDLKAAIAYCESVGDYASRELLE-DILESEEDHIDWLETQLDLIDKIGL 146
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 33.9 bits (77), Expect = 4e-04
Identities = 5/49 (10%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 2 QALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50
+A + + D E ++E+ + ++ ++++ +G+
Sbjct: 101 EAYSQFLKVCKEQGDIVTARLFE-RIIEEEQAHLTYYENIGSHIKNLGD 148
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 33.5 bits (76), Expect = 6e-04
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 1 MQALLELHNLASNHKDANFTDFLESEFLQEQVDSIKSLADLLTNVRRVGE 50
++ E + + D + E + ++ + L ++ R+G
Sbjct: 98 LKLYREARDYCAEVGDIVSKNIFE-SLITDEEGHVDFLETQISLYDRLGP 146
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 22.8 bits (48), Expect = 4.4
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 46 RRVGEGLGIFVFDKE 60
R++G+ L +F +
Sbjct: 3 RKIGKELELFTNSQL 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.361
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 204,449
Number of extensions: 6425
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 21
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)