BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6336
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/67 (95%), Positives = 66/67 (98%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKAR+GDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 39 VIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 98
Query: 65 MGSLYQE 71
MGSLYQE
Sbjct: 99 MGSLYQE 105
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92
Query: 65 MGSLYQE 71
MG LYQE
Sbjct: 93 MGQLYQE 99
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap,
Gabaa Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap,
Gabaa Receptor Associated Protein
Length = 117
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90
Query: 65 MGSLYQE 71
MG LYQE
Sbjct: 91 MGQLYQE 97
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92
Query: 65 MGSLYQE 71
MG LYQE
Sbjct: 93 MGQLYQE 99
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 35 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 94
Query: 65 MGSLYQE 71
MG LY++
Sbjct: 95 MGQLYED 101
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 30 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 89
Query: 65 MGSLYQE 71
MG LY++
Sbjct: 90 MGQLYED 96
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 34 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 94 MSAIYQE 100
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 32 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 91
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 92 MSAIYQE 98
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 93 MSAIYQE 99
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 93 MSAIYQE 99
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 31 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 90
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 91 MSAIYQE 97
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 34 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 65 MGSLYQE 71
M ++YQE
Sbjct: 94 MSAIYQE 100
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
VIVEK ++I D+DK+KYLVPSD+TV QF ++IRKR+QL E A+F FV+ +P +S T
Sbjct: 31 VIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90
Query: 65 MGSLYQE 71
MG LY++
Sbjct: 91 MGQLYEK 97
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
+I EK + IG+LD+ K+LVPSDLTVGQF ++RKRVQL E ALF + N+ + P+SA
Sbjct: 34 IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQ 93
Query: 65 MGSLYQE 71
M +Y +
Sbjct: 94 MADIYSK 100
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Query: 5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRV---------QLRPEDALFFFVN 55
V++E+A ++ + ++KKK+LVP ++ VG+F F++ + + +L E ++ FVN
Sbjct: 34 VVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVN 93
Query: 56 NVIPPTSATMGSLYQ 70
N++P T M LY+
Sbjct: 94 NIVPKTGLLMQDLYE 108
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 5 VIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTS 62
V+VE+ P+ + LDK K+LVP +LT+ QF +IR R+ LR +A + VNN + S
Sbjct: 41 VVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMS 100
Query: 63 ATMGSLYQE 71
ATM +Y++
Sbjct: 101 ATMAEIYRD 109
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTSATMGSLYQE 71
LDK K+LVP + + + +IR+R+QL P A F VN + + S + +Y++
Sbjct: 48 LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQ 102
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN 56
LDK K+LVP + + + +IR+R+QL A F VN
Sbjct: 52 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNG 90
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN 56
LDK K+LVP + + + +IR+R+QL A F VN
Sbjct: 52 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNG 90
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN 56
LDK K+LVP + + + +IR+R+QL A F VN
Sbjct: 52 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNG 90
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 55
LDK K+LVP + + + +IR+R+QL A F VN
Sbjct: 48 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVN 85
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein
Light Chain-3
Length = 120
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 18 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 55
LDK K+LVP + + + +IR+R+QL A F VN
Sbjct: 47 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVN 84
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67
KY+ P V F + V E + F+ N PPTS +G+
Sbjct: 97 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGT 142
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 15 IGD---LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT-SATMGSLYQ 70
+GD + KK+ V T+ I+K ++L + LF +VN P+ +G+LY+
Sbjct: 13 VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYE 72
>pdb|1TN0|A Chain A, Structure Of Bacterorhodopsin Mutant A51p
pdb|1TN0|B Chain B, Structure Of Bacterorhodopsin Mutant A51p
Length = 249
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 29 LTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 65
+ +G YFL++ P+ F+ + ++PP + TM
Sbjct: 20 MGLGTLYFLVKGMGVSDPDAKKFYAITTLVPPIAFTM 56
>pdb|4AYJ|A Chain A, Molecular Structure Of A Metal-Independent Bacterial
Glycosyltransferase That Catalyzes The Synthesis Of
Histo- Blood Group A Antigen
pdb|4AYJ|B Chain B, Molecular Structure Of A Metal-Independent Bacterial
Glycosyltransferase That Catalyzes The Synthesis Of
Histo- Blood Group A Antigen
pdb|4AYJ|C Chain C, Molecular Structure Of A Metal-Independent Bacterial
Glycosyltransferase That Catalyzes The Synthesis Of
Histo- Blood Group A Antigen
pdb|4AYJ|D Chain D, Molecular Structure Of A Metal-Independent Bacterial
Glycosyltransferase That Catalyzes The Synthesis Of
Histo- Blood Group A Antigen
pdb|4AYL|A Chain A, Molecular Structure Of A Metal-Independent Bacterial
Glycosyltransferase That Catalyzes The Synthesis Of
Histo- Blood Group A Antigen
Length = 246
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 20 KKKYLVPSDLTVGQFYFLIRKRVQL-RPEDALFFFVNNVI 58
K+K L D T+ +F+ +R + QL R D LFFF N++
Sbjct: 60 KQKNLGWPDNTLKRFHIFLRIKEQLERETDYLFFFNANLL 99
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 10 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 60
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 66 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 116
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 10 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 60
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 10 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 60
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,092,860
Number of Sequences: 62578
Number of extensions: 67770
Number of successful extensions: 247
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 30
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)