Query psy6336
Match_columns 73
No_of_seqs 108 out of 300
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:46:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m95_A Autophagy related prote 100.0 3.5E-35 1.2E-39 190.4 8.6 72 2-73 36-107 (125)
2 3rui_B Autophagy-related prote 100.0 8E-35 2.7E-39 187.0 9.0 71 2-72 30-100 (118)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.1E-34 3.7E-39 186.7 8.5 71 2-72 31-101 (119)
4 2zjd_A Microtubule-associated 100.0 1.2E-32 4.1E-37 179.4 8.3 71 2-72 35-107 (130)
5 1eo6_A GATE-16, golgi-associat 100.0 3.8E-32 1.3E-36 173.9 8.6 71 2-72 28-98 (117)
6 2r2q_A Gamma-aminobutyric acid 100.0 6.1E-32 2.1E-36 171.2 8.7 71 2-72 27-97 (110)
7 4gdk_A Ubiquitin-like protein 99.9 2E-26 6.9E-31 142.2 7.7 63 11-73 12-75 (91)
8 1wz3_A Autophagy 12B, ATG12B, 99.9 1.1E-24 3.6E-29 135.6 7.7 67 2-73 13-80 (96)
9 3w1s_C Ubiquitin-like protein 99.9 1.4E-23 5E-28 129.5 6.7 59 12-73 16-75 (91)
10 3goe_A DNA repair protein RAD6 93.2 0.1 3.4E-06 31.2 3.5 47 19-65 20-66 (82)
11 1wh3_A 59 kDa 2'-5'-oligoadeny 87.7 1.6 5.4E-05 24.3 5.1 46 22-68 21-66 (87)
12 1wy8_A NP95-like ring finger p 87.6 1.6 5.5E-05 24.4 5.1 43 25-68 26-68 (89)
13 2uyz_B Small ubiquitin-related 86.8 1.4 4.9E-05 24.1 4.5 47 21-68 16-62 (79)
14 3mtn_B UBA80, ubcep1, ubiquiti 86.1 1.1 3.8E-05 24.6 3.8 46 21-67 16-61 (85)
15 3a9j_A Ubiquitin; protein comp 85.3 1.3 4.5E-05 23.6 3.8 45 22-67 14-58 (76)
16 3n3k_B Ubiquitin; hydrolase, p 85.3 1.1 3.7E-05 24.7 3.5 45 22-67 17-61 (85)
17 1ndd_A NEDD8, protein (ubiquit 84.2 1.7 5.8E-05 23.1 3.9 45 22-67 14-58 (76)
18 1oey_A P67-PHOX, neutrophil cy 83.9 0.93 3.2E-05 26.8 2.9 46 25-70 20-69 (83)
19 2dzi_A Ubiquitin-like protein 83.5 2.4 8.2E-05 23.0 4.4 45 22-67 21-65 (81)
20 2hj8_A Interferon-induced 17 k 83.5 1.8 6.2E-05 24.5 4.0 46 22-68 18-63 (88)
21 4dwf_A HLA-B-associated transc 81.9 2.2 7.4E-05 24.0 3.9 45 22-67 19-63 (90)
22 1wyw_B Ubiquitin-like protein 81.8 2.9 9.9E-05 24.2 4.5 46 22-68 35-80 (97)
23 1yqb_A Ubiquilin 3; structural 81.8 2.7 9.3E-05 24.6 4.4 47 21-68 34-80 (100)
24 2kk8_A Uncharacterized protein 81.7 2.3 8E-05 24.1 4.0 44 23-67 25-69 (84)
25 3a4r_A Nfatc2-interacting prot 80.9 5.6 0.00019 22.3 5.6 47 21-68 21-67 (79)
26 3dbh_I NEDD8; cell cycle, acti 80.9 2 6.9E-05 23.7 3.5 45 22-67 26-70 (88)
27 3phx_B Ubiquitin-like protein 80.1 3 0.0001 22.7 4.0 45 22-67 18-62 (79)
28 4eew_A Large proline-rich prot 79.9 2.8 9.4E-05 23.4 3.9 45 22-67 31-75 (88)
29 2l7r_A Ubiquitin-like protein 79.8 3.5 0.00012 23.6 4.4 47 21-68 30-76 (93)
30 3k9o_B Ubiquitin, UBB+1; E2-25 79.5 2.7 9.4E-05 23.7 3.8 45 22-67 15-59 (96)
31 1yx5_B Ubiquitin; proteasome, 79.1 2.8 9.7E-05 24.0 3.8 45 22-67 14-58 (98)
32 1wx7_A Ubiquilin 3; ubiquitin- 78.9 7.4 0.00025 22.6 5.9 47 21-68 29-75 (106)
33 2bwf_A Ubiquitin-like protein 78.8 2.1 7.3E-05 23.0 3.1 46 21-67 16-61 (77)
34 4fbj_B NEDD8; effector-HOST ta 78.6 2.5 8.6E-05 23.9 3.4 45 22-67 14-58 (88)
35 1wx8_A Riken cDNA 4931431F19; 78.6 3.7 0.00013 23.3 4.2 45 22-67 30-74 (96)
36 1wjn_A Tubulin-folding protein 78.4 2.6 9E-05 24.3 3.5 31 24-54 28-59 (97)
37 2faz_A Ubiquitin-like containi 78.2 2.1 7.1E-05 23.3 2.9 43 23-66 18-61 (78)
38 1ip9_A BEM1 protein; ubiquitin 77.9 3.3 0.00011 24.7 3.9 30 23-53 26-55 (85)
39 3v6c_B Ubiquitin; structural g 77.6 3.4 0.00012 23.3 3.8 45 22-67 31-75 (91)
40 1x1m_A Ubiquitin-like protein 77.2 6.9 0.00024 22.9 5.2 39 28-67 44-85 (107)
41 2kan_A Uncharacterized protein 77.2 4.4 0.00015 23.4 4.3 46 21-67 27-73 (94)
42 4hcn_B Polyubiquitin, ubiquiti 76.4 3.1 0.00011 23.9 3.5 45 22-67 36-80 (98)
43 1v5o_A 1700011N24RIK protein; 75.4 3.1 0.00011 24.3 3.3 45 23-67 26-70 (102)
44 1sif_A Ubiquitin; hydrophobic 75.4 3.4 0.00012 23.3 3.4 45 22-67 23-67 (88)
45 2kd0_A LRR repeats and ubiquit 75.3 2.9 0.0001 23.6 3.1 43 23-66 26-68 (85)
46 2lxa_A Ubiquitin-like protein 75.2 9.3 0.00032 22.0 5.3 43 25-68 20-63 (87)
47 1v5t_A 8430435I17RIK protein; 74.2 7.6 0.00026 22.0 4.8 44 24-67 23-68 (90)
48 3m63_B Ubiquitin domain-contai 74.1 2.6 8.7E-05 24.8 2.7 44 23-67 42-85 (101)
49 2kj6_A Tubulin folding cofacto 73.9 8.9 0.0003 22.5 5.1 47 21-67 29-81 (97)
50 1wgd_A Homocysteine-responsive 73.8 5.5 0.00019 22.5 4.1 43 25-68 26-70 (93)
51 2ojr_A Ubiquitin; lanthide-bin 73.0 6.5 0.00022 23.2 4.4 45 22-67 49-93 (111)
52 1uh6_A Ubiquitin-like 5; beta- 72.9 6.2 0.00021 23.7 4.3 45 22-67 42-86 (100)
53 1wxv_A BAG-family molecular ch 72.9 6.7 0.00023 22.1 4.2 46 22-67 20-70 (92)
54 1yfb_A Transition state regula 72.1 3.5 0.00012 22.6 2.7 21 36-56 28-48 (59)
55 1ttn_A DC-UBP, dendritic cell- 71.2 7.5 0.00026 22.7 4.3 44 23-67 38-81 (106)
56 3rt3_B Ubiquitin-like protein 69.9 5.5 0.00019 24.5 3.6 45 23-67 17-62 (159)
57 3vdz_A Ubiquitin-40S ribosomal 69.8 5.7 0.0002 23.5 3.6 45 22-67 49-93 (111)
58 2kc2_A Talin-1, F1; FERM, adhe 69.4 8.8 0.0003 24.1 4.5 41 14-55 17-57 (128)
59 2kjr_A CG11242; UBL, ubiquitin 69.3 14 0.00049 21.4 5.4 47 21-67 30-81 (95)
60 2k8h_A Small ubiquitin protein 69.3 16 0.00055 22.0 5.6 47 21-68 39-85 (110)
61 3plu_A Ubiquitin-like modifier 68.5 6.9 0.00024 23.4 3.7 45 21-66 34-78 (93)
62 2l66_A SSO7C4, transcriptional 68.4 4.8 0.00016 21.1 2.7 21 36-56 18-38 (53)
63 2klc_A Ubiquilin-1; ubiquitin- 68.2 4.8 0.00017 23.4 3.0 46 21-67 37-82 (101)
64 1v86_A DNA segment, CHR 7, way 67.8 4 0.00014 23.5 2.5 43 23-67 31-73 (95)
65 2dzm_A FAS-associated factor 1 67.7 8.2 0.00028 22.9 4.0 44 24-68 24-68 (100)
66 3m62_B UV excision repair prot 67.7 4.7 0.00016 23.7 2.9 44 23-67 16-59 (106)
67 1j8c_A Ubiquitin-like protein 67.6 6.2 0.00021 24.1 3.5 45 22-67 45-89 (125)
68 2e5i_A Heterogeneous nuclear r 67.4 5.1 0.00017 24.5 3.1 28 45-72 21-49 (124)
69 2wyq_A HHR23A, UV excision rep 67.1 13 0.00045 20.1 5.2 45 22-67 19-66 (85)
70 1we7_A SF3A1 protein; structur 66.5 9.1 0.00031 22.6 4.0 44 23-67 50-93 (115)
71 4dbg_A Ranbp-type and C3HC4-ty 64.5 21 0.00071 21.5 5.6 45 21-66 39-83 (105)
72 1vd2_A Protein kinase C, IOTA 64.4 13 0.00044 21.9 4.3 48 21-68 18-70 (89)
73 3b1l_X E3 ubiquitin-protein li 68.1 1.4 4.8E-05 23.8 0.0 44 23-67 15-58 (76)
74 1wm3_A Ubiquitin-like protein 63.5 16 0.00054 19.8 4.7 40 20-59 13-52 (72)
75 3b08_A Polyubiquitin-C, ubiqui 62.4 11 0.00039 22.4 4.0 46 21-67 89-134 (152)
76 2kdi_A Ubiquitin, vacuolar pro 62.2 4.4 0.00015 24.2 2.0 43 23-66 24-66 (114)
77 3b08_A Polyubiquitin-C, ubiqui 61.8 7.6 0.00026 23.2 3.1 45 22-67 14-58 (152)
78 3zzy_A Polypyrimidine tract-bi 61.2 6.8 0.00023 24.3 2.8 33 40-72 19-52 (130)
79 1v6e_A Cytoskeleton-associated 60.9 20 0.0007 20.3 5.9 47 2-53 7-54 (95)
80 1q1o_A Cell division control p 60.9 3.7 0.00013 24.9 1.5 30 20-49 24-53 (98)
81 1we6_A Splicing factor, putati 60.0 13 0.00045 21.7 3.9 44 22-66 44-88 (111)
82 2daf_A FLJ35834 protein; hypot 59.6 14 0.00047 23.0 4.0 44 23-67 31-74 (118)
83 2l32_A Small archaeal modifier 59.4 10 0.00035 21.2 3.1 35 23-62 15-49 (74)
84 2io0_B Small ubiquitin-related 58.3 23 0.00078 20.4 4.7 40 20-59 17-56 (91)
85 2fnj_B Transcription elongatio 58.2 12 0.0004 23.1 3.5 42 25-67 18-59 (118)
86 2kvr_A Ubiquitin carboxyl-term 58.2 8.8 0.0003 23.9 2.9 49 22-70 59-115 (130)
87 1uel_A HHR23B, UV excision rep 58.0 9.1 0.00031 21.8 2.8 44 22-66 14-60 (95)
88 2io1_B Small ubiquitin-related 57.5 18 0.00061 21.0 4.1 39 21-59 20-58 (94)
89 1pqs_A Cell division control p 57.3 8.2 0.00028 22.2 2.5 23 23-45 6-28 (77)
90 3rt3_B Ubiquitin-like protein 57.2 16 0.00053 22.4 4.0 45 22-67 95-139 (159)
91 3l0w_B Monoubiquitinated proli 54.3 10 0.00035 24.2 2.9 44 23-67 15-58 (169)
92 2jxx_A Nfatc2-interacting prot 53.9 32 0.0011 20.3 5.4 47 21-68 39-85 (97)
93 1ryj_A Unknown; beta/alpha pro 53.1 14 0.00049 20.0 3.0 37 22-63 17-53 (70)
94 4b6w_A Tubulin-specific chaper 52.5 14 0.00046 21.1 2.9 28 25-52 21-49 (86)
95 1wf9_A NPL4 family protein; be 52.5 5.1 0.00017 23.6 1.1 30 23-52 21-52 (107)
96 3u5e_m 60S ribosomal protein L 52.1 3 0.0001 25.3 0.0 44 23-67 15-58 (128)
97 3u30_A Ubiquitin, linear DI-ub 51.1 20 0.00068 22.3 3.8 44 23-67 35-78 (172)
98 1v2y_A 3300001G02RIK protein; 50.6 13 0.00043 22.4 2.7 50 18-67 15-81 (105)
99 4ajy_B Transcription elongatio 50.4 34 0.0011 21.1 4.7 43 23-66 15-58 (118)
100 1wju_A NEDD8 ultimate buster-1 49.3 39 0.0013 20.0 7.5 47 20-67 31-77 (100)
101 2kdb_A Homocysteine-responsive 49.2 17 0.00057 21.3 3.0 45 22-68 39-86 (99)
102 4a20_A Ubiquitin-like protein 49.2 12 0.00042 21.9 2.4 42 25-67 38-80 (98)
103 2d07_B Ubiquitin-like protein 48.1 27 0.00093 20.0 3.8 39 21-59 30-68 (93)
104 3u5c_f 40S ribosomal protein S 46.2 4.2 0.00014 25.9 0.0 44 23-67 15-58 (152)
105 2kzr_A Ubiquitin thioesterase 45.8 19 0.00065 20.0 2.8 29 25-53 17-45 (86)
106 3cmm_A Ubiquitin-activating en 45.2 23 0.00078 29.0 4.1 48 22-71 921-979 (1015)
107 2ylm_A Ubiquitin carboxyl-term 45.1 25 0.00086 26.4 4.1 32 23-54 151-182 (530)
108 2pjh_A Protein NPL4, nuclear p 43.7 14 0.00047 20.8 2.0 29 24-52 19-48 (80)
109 3q3f_A Ribonuclease/ubiquitin 43.6 25 0.00085 23.1 3.5 44 23-67 120-163 (189)
110 2eke_C Ubiquitin-like protein 42.0 42 0.0014 20.0 4.1 39 21-59 43-81 (106)
111 4efo_A Serine/threonine-protei 42.0 38 0.0013 20.0 3.9 37 20-56 25-61 (94)
112 2w1t_A Spovt, stage V sporulat 40.2 22 0.00074 23.5 2.8 20 36-55 20-39 (178)
113 1wz0_A Ubiquitin-like protein 39.7 42 0.0014 19.8 3.8 39 21-59 37-75 (104)
114 3gs2_A E3 ubiquitin-protein li 39.2 23 0.00079 22.0 2.6 54 19-72 21-96 (111)
115 1sjr_A Polypyrimidine tract-bi 37.3 33 0.0011 22.0 3.3 28 45-72 42-70 (164)
116 3hvz_A Uncharacterized protein 34.8 18 0.00062 20.5 1.5 39 20-61 15-53 (78)
117 2i1s_A Hypothetical protein; m 34.2 80 0.0027 20.2 4.8 28 21-48 24-51 (188)
118 2ylm_A Ubiquitin carboxyl-term 33.4 30 0.001 25.9 2.9 51 20-70 353-410 (530)
119 2dzj_A Synaptic glycoprotein S 33.1 22 0.00076 20.2 1.7 43 24-66 29-73 (88)
120 3u52_E Phenol hydroxylase comp 31.3 38 0.0013 21.2 2.7 47 21-67 40-95 (119)
121 2kmm_A Guanosine-3',5'-BIS(dip 30.5 46 0.0016 17.4 2.7 40 20-62 10-49 (73)
122 1wgg_A Ubiquitin carboxyl-term 30.2 43 0.0015 19.1 2.7 31 23-53 22-52 (96)
123 3po0_A Small archaeal modifier 29.5 30 0.001 19.2 1.9 42 22-63 21-72 (89)
124 3ai5_A Yeast enhanced green fl 29.5 30 0.001 24.5 2.2 44 23-67 248-291 (307)
125 3mly_P HIV-1 GP120 third varia 29.1 12 0.0004 16.2 -0.0 14 39-52 4-17 (23)
126 3ll7_A Putative methyltransfer 29.1 32 0.0011 25.1 2.4 19 37-55 376-394 (410)
127 1mvf_D MAZE protein, PEMI-like 28.2 49 0.0017 18.2 2.6 21 36-56 19-39 (82)
128 1fm0_D Molybdopterin convertin 28.1 30 0.001 18.6 1.7 37 26-63 23-64 (81)
129 3uji_P Envelope glycoprotein G 27.4 13 0.00044 16.1 -0.0 14 39-52 4-17 (23)
130 1vjk_A Molybdopterin convertin 26.1 47 0.0016 18.9 2.4 42 22-63 30-81 (98)
131 1wia_A Hypothetical ubiquitin- 24.7 60 0.002 18.0 2.6 28 22-51 21-48 (95)
132 2glw_A PHS018, 92AA long hypot 24.5 52 0.0018 19.1 2.3 22 35-56 65-86 (92)
133 4a3p_A Ubiquitin carboxyl-term 23.3 1.6E+02 0.0055 19.2 5.8 47 22-68 143-195 (217)
134 3na3_A DNA mismatch repair pro 22.0 54 0.0019 23.4 2.4 25 48-72 257-284 (348)
135 3shq_A UBLCP1; phosphatase, hy 21.8 20 0.00068 25.3 0.1 44 23-66 19-64 (320)
136 3kyd_D Small ubiquitin-related 21.2 1.5E+02 0.005 18.0 4.2 38 21-58 53-90 (115)
137 3mlz_P HIV-1 GP120 third varia 20.5 13 0.00044 16.4 -0.8 13 39-51 5-17 (25)
138 1t0y_A Tubulin folding cofacto 20.3 1.4E+02 0.0049 17.5 7.3 48 2-54 6-53 (122)
139 2do1_A Nuclear protein HCC-1; 20.3 64 0.0022 17.3 2.0 16 26-41 10-25 (55)
No 1
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=3.5e-35 Score=190.43 Aligned_cols=72 Identities=89% Similarity=1.307 Sum_probs=70.6
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhhC
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII 73 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f~ 73 (73)
||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++||+|++||+||++|.
T Consensus 36 rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~k 107 (125)
T 3m95_A 36 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH 107 (125)
T ss_dssp EEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHC
T ss_pred eEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999983
No 2
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=8e-35 Score=186.99 Aligned_cols=71 Identities=58% Similarity=0.958 Sum_probs=70.2
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI 72 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f 72 (73)
||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|
T Consensus 30 riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 100 (118)
T 3rui_B 30 RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEH 100 (118)
T ss_dssp EEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.1e-34 Score=186.65 Aligned_cols=71 Identities=49% Similarity=0.804 Sum_probs=70.3
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI 72 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f 72 (73)
||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|
T Consensus 31 rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 101 (119)
T 3h9d_A 31 RLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKY 101 (119)
T ss_dssp EEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHH
T ss_pred eEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998
No 4
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=99.98 E-value=1.2e-32 Score=179.39 Aligned_cols=71 Identities=27% Similarity=0.506 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCC-CCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEE-EEcCcCCCCcchHHHHHhhh
Q psy6336 2 MWRVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNNVIPPTSATMGSLYQEI 72 (73)
Q Consensus 2 ~iPvIvEr~~~~~-lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl-~Vn~~lp~~~~~m~~lY~~f 72 (73)
||||||||+++++ +|+|||+|||||+++||+||+++||+||+|++++|||| ||||++|+++++||+||++|
T Consensus 35 kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~ 107 (130)
T 2zjd_A 35 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107 (130)
T ss_dssp EEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHH
T ss_pred ceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHh
Confidence 8999999999999 99999999999999999999999999999999999999 99999999999999999998
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=99.97 E-value=3.8e-32 Score=173.89 Aligned_cols=71 Identities=54% Similarity=0.879 Sum_probs=70.1
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI 72 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f 72 (73)
|||||||+++++++|.|||+||+||.++|++||+.+||+||+|++++||||||||.+|++|++|++||++|
T Consensus 28 ~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~ 98 (117)
T 1eo6_A 28 RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98 (117)
T ss_dssp EEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred eEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=99.97 E-value=6.1e-32 Score=171.19 Aligned_cols=71 Identities=82% Similarity=1.259 Sum_probs=70.1
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI 72 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f 72 (73)
|||||||+++++++|.|||+||+||.++|++||+.+||+||+|++++||||||||.+|+++++|++||++|
T Consensus 27 ~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~ 97 (110)
T 2r2q_A 27 RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 97 (110)
T ss_dssp EEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred ceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=99.93 E-value=2e-26 Score=142.19 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=59.6
Q ss_pred CCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336 11 PKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII 73 (73)
Q Consensus 11 ~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~ 73 (73)
+-+++|+|+|+||+||+++|++||+.+|||||+|++++|||+|||| ++|++|++|++||++|.
T Consensus 12 ~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 12 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG 75 (91)
T ss_dssp ECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred ecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence 3468999999999999999999999999999999999999999998 68999999999999983
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=99.91 E-value=1.1e-24 Score=135.62 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=62.7
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII 73 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~ 73 (73)
+|+|+.+.. +++|.|+|+||+||+++|++||+.+|||||+|+ |||||||| ++|++|++|++||++|.
T Consensus 13 KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~k 80 (96)
T 1wz3_A 13 KIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFG 80 (96)
T ss_dssp EEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHC
T ss_pred eEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhC
Confidence 688888776 559999999999999999999999999999998 99999999 89999999999999983
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=1.4e-23 Score=129.51 Aligned_cols=59 Identities=17% Similarity=0.479 Sum_probs=48.8
Q ss_pred CCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336 12 KARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII 73 (73)
Q Consensus 12 ~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~ 73 (73)
-.++|+|+|+||+||+++|++||+.+|||||+| +|+|+|||| ++|++|++|++||++|.
T Consensus 16 ~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk 75 (91)
T 3w1s_C 16 IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK 75 (91)
T ss_dssp CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC
T ss_pred cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC
Confidence 358999999999999999999999999999999 799999999 68999999999999983
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.23 E-value=0.1 Score=31.23 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=38.7
Q ss_pred cceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchH
Q psy6336 19 DKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 65 (73)
Q Consensus 19 dk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m 65 (73)
+.-+|-||.+.++++++..-|++=++++++++.|..++.-..++++.
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp 66 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV 66 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence 35689999999999999999999999999999998887433333333
No 11
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.67 E-value=1.6 Score=24.28 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.8
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk~L~d~~tL~~~ 66 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGIY 66 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHHH
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE-CCEEccCCCCHHHC
Confidence 45689999999999999999999887655554 55444566777753
No 12
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.62 E-value=1.6 Score=24.42 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=33.3
Q ss_pred ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk~L~d~~tL~~~ 68 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRLFY-RGKQLENGYTLFDY 68 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTEECCSSSBHHHH
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCeECCCCCCHHHC
Confidence 89999999999999999999887655554 55444566777763
No 13
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.78 E-value=1.4 Score=24.07 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=36.2
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..+-|.++.|++++...+.++.++++++--++|-+..+ ..+.++++.
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L-~d~~tl~~~ 62 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 62 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEe-CCCCCHHHc
Confidence 34669999999999999999999998877666644344 456777763
No 14
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=86.07 E-value=1.1 Score=24.58 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=33.4
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~~L~d~~tL~~ 61 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 61 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBTGG
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-CCEECCCCCCHHH
Confidence 345689999999999999999999987544443 5544445566554
No 15
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=85.33 E-value=1.3 Score=23.59 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.3
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.|++++...|.++.++++++--.+| ++.....+.++++
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~ 58 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCeECCCCCcHHH
Confidence 45689999999999999999999887554444 5433344555543
No 16
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=85.27 E-value=1.1 Score=24.67 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=32.8
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~~L~d~~tL~~ 61 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 61 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TBEECCTTCBTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CCeECCCCCCHHH
Confidence 45588999999999999999999987654444 5544445555544
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=84.18 E-value=1.7 Score=23.15 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=32.4
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.|++++...|.++.++++++--.+| ++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~ 58 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAAD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCEECCCCCcHHH
Confidence 45689999999999999999999887544444 5443344555543
No 18
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=83.93 E-value=0.93 Score=26.80 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=34.8
Q ss_pred ecCCCChhhHHHHHHhhhcCCCCCeEEEEEc---C-cCCCCcchHHHHHh
Q psy6336 25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---N-VIPPTSATMGSLYQ 70 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn---~-~lp~~~~~m~~lY~ 70 (73)
||.+.+++++..-|++||++++++...-|=. + .++..+..|.+..+
T Consensus 20 vp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~ 69 (83)
T 1oey_A 20 TQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWG 69 (83)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHH
Confidence 8999999999999999999987766665654 1 24566666665543
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.51 E-value=2.4 Score=22.99 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=32.4
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-KGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHH
Confidence 45689999999999999999999877554444 4433344555554
No 20
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=83.48 E-value=1.8 Score=24.46 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=34.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~~ 63 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGEY 63 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES-SSSCCCTTSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCcHHHc
Confidence 34589999999999999999999987665555 44444567777763
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=81.87 E-value=2.2 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=33.3
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|..+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~d~~tL~~ 63 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQE 63 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCeECCCCCCHHH
Confidence 35588999999999999999999887655454 5444455666654
No 22
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=81.83 E-value=2.9 Score=24.17 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=35.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
.+-|..+.|++.+...|..+.++++++--++|-+..+ ..+.++++.
T Consensus 35 ~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L-~d~~tl~dy 80 (97)
T 1wyw_B 35 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 80 (97)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEc-CCCCCHHHC
Confidence 4669999999999999999999999877666644444 456677653
No 23
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.78 E-value=2.7 Score=24.57 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=35.0
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~y 80 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-AGKILKDPDSLAQC 80 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCEECCCcCcHHHC
Confidence 345689999999999999999999876555444 55444566777753
No 24
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=81.70 E-value=2.3 Score=24.09 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=33.5
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcC-CCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVI-PPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~l-p~~~~~m~~ 67 (73)
.-|+.+.||+++...|..+.++++++--.+| ++.. ...+.++++
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~lL~D~~tL~~ 69 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-DGIVILREDLTVEQ 69 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCCSSSBHHH
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCEEecCCcCCHHH
Confidence 4589999999999999999999887554444 4433 566777775
No 25
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=80.88 E-value=5.6 Score=22.32 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=37.2
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..|-|.++.+++.+....+++.++++++--|+|-++.+ ..+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKL-SGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEEC-CSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 46789999999999999999999999987777744444 445666654
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=80.86 E-value=2 Score=23.74 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=32.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~ 70 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAAD 70 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHH
Confidence 45689999999999999999999876544444 5544445666654
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=80.06 E-value=3 Score=22.69 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=33.2
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~ 62 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGE 62 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-CCEECCCCCcHHH
Confidence 35689999999999999999999987654444 5444445666654
No 28
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=79.93 E-value=2.8 Score=23.39 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=33.7
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 31 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 31 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQE 75 (88)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCCCcHHH
Confidence 35589999999999999999999987665444 5544455666654
No 29
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.82 E-value=3.5 Score=23.64 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=34.9
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~y 76 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL-AGAPLEDEATLGQC 76 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE-TTEECCTTSBHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE-CCEECCCCCcHHHC
Confidence 345689999999999999999999877554444 45444567777763
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=79.49 E-value=2.7 Score=23.73 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.7
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~ 59 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 59 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE-CCEECCCCCcHHH
Confidence 45689999999999999999999877544443 5544445556554
No 31
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=79.13 E-value=2.8 Score=23.99 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.1
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~-~Gk~L~D~~tL~~ 58 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCEECCCCCCHHH
Confidence 45688999999999999999999887554444 4433344555543
No 32
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.91 E-value=7.4 Score=22.60 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=34.5
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~~ 75 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-AGKILKDPDSLAQC 75 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE-TTEECCTTSCHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCEECCCcCcHHHc
Confidence 345689999999999999999999876544444 55444566777653
No 33
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=78.81 E-value=2.1 Score=22.97 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=32.9
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk~L~d~~tL~~ 61 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIY-SGKILKDDQTVES 61 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE-CCeEcCCCCCHHH
Confidence 345689999999999999999999887655444 4433344555543
No 34
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=78.62 E-value=2.5 Score=23.91 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=32.6
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 58 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAAD 58 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-CCeECCCCCcHHH
Confidence 35588999999999999999999887554444 5444445555554
No 35
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.57 E-value=3.7 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=33.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~ 74 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLIF-TGKILRDQDILSQ 74 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-TTEECCTTSCHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCcCCHHH
Confidence 45589999999999999999999887654444 4443456677776
No 36
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.42 E-value=2.6 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=26.3
Q ss_pred eecCCCChhhHHHHHHhhhcCCCC-CeEEEEE
Q psy6336 24 LVPSDLTVGQFYFLIRKRVQLRPE-DALFFFV 54 (73)
Q Consensus 24 LVp~~~tv~qf~~~iRk~L~L~~~-~alfl~V 54 (73)
-+|.++||+++...|.+..+++++ +.|+++-
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 489999999999999999999875 6676653
No 37
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=78.20 E-value=2.1 Score=23.26 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=31.1
Q ss_pred ee-ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 23 YL-VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 23 fL-Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
+- |+.+.|++++...|..+.++++++--.+| ++.....+.+++
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~-~g~~L~d~~tL~ 61 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLFY-RGKQMEDGHTLF 61 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTT
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCEECCCCCCHH
Confidence 44 88999999999999999999887655444 443334455554
No 38
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=77.93 E-value=3.3 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=23.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEE
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFF 53 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~ 53 (73)
-.||.+.++.|+..-|+.||+++ +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 35999999999999999999994 3334443
No 39
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=77.62 E-value=3.4 Score=23.31 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CCeECCCcCcHHH
Confidence 34589999999999999999999987554444 5544455566554
No 40
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.22 E-value=6.9 Score=22.94 Aligned_cols=39 Identities=8% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCChhhHHHHHHhhh--cCCCCC-eEEEEEcCcCCCCcchHHH
Q psy6336 28 DLTVGQFYFLIRKRV--QLRPED-ALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 28 ~~tv~qf~~~iRk~L--~L~~~~-alfl~Vn~~lp~~~~~m~~ 67 (73)
+.||+++...|..+. ++++++ --.+|-+..+ ..+.++++
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L-~D~~tL~~ 85 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKL-KDDQTLDF 85 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEEC-CTTCBHHH
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeEC-CCCCcHHH
Confidence 599999999999999 999877 4444443344 56677765
No 41
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=77.17 E-value=4.4 Score=23.39 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=33.4
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCc-chHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS-ATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~-~~m~~ 67 (73)
...-|+.+.||+++...|..+.++++++--.+|-+..+ ..+ .++++
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~~tL~~ 73 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIEL-ADDYRNLNE 73 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEE-CCTTSBHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEEC-CCCcccHHH
Confidence 34558999999999999999999987765544433344 445 67765
No 42
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=76.36 E-value=3.1 Score=23.95 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=32.7
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 36 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 80 (98)
T 4hcn_B 36 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 80 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTCBSGG
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCcHHH
Confidence 45588999999999999999999887554444 5444455555554
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.45 E-value=3.1 Score=24.27 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=30.9
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.=|+.+.||+++...|..+.++++++--.+|-+..+-..+.++++
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ 70 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGS 70 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHH
Confidence 448999999999999999999987654444433333222246665
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=75.44 E-value=3.4 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=31.5
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~ 67 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 67 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBSGG
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhEEEEE-CCEECCCCCcHHH
Confidence 34588999999999999999999876544444 4433344555543
No 45
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.30 E-value=2.9 Score=23.61 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
.-|+.+.||+++...|....++++++--.+| ++.....+.+++
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~ 68 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIF-KGKVLVETSTLK 68 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEE-TTEECCTTCBTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEE-CCeECCCcCCHH
Confidence 3488999999999999999999876443333 444334455554
No 46
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=75.18 E-value=9.3 Score=21.96 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=31.7
Q ss_pred ecCCCChhhHHHHH-HhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 25 VPSDLTVGQFYFLI-RKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 25 Vp~~~tv~qf~~~i-Rk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
++++.||+++..-| ..+-++++++--.+| ++.....+.++++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLLL-KGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEEE-TTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEEE-CCEECcCcCCHHHc
Confidence 34899999999999 777788887765555 44445667777753
No 47
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=74.23 E-value=7.6 Score=21.97 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=32.0
Q ss_pred eecCCCChhhHHHHHHhhhcCCCCCeEEEE--EcCcCCCCcchHHH
Q psy6336 24 LVPSDLTVGQFYFLIRKRVQLRPEDALFFF--VNNVIPPTSATMGS 67 (73)
Q Consensus 24 LVp~~~tv~qf~~~iRk~L~L~~~~alfl~--Vn~~lp~~~~~m~~ 67 (73)
-|+.+.||++|...|..+-++++++--.+. .++.....+.++++
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~ 68 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHH
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHH
Confidence 468999999999999999999886554440 24444455667765
No 48
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=74.06 E-value=2.6 Score=24.78 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=31.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRLIY-SGKILKDDQTVES 85 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-TTEECCTTSBTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-CCEECCCcCcHHH
Confidence 4578999999999999999999887544444 5444455555544
No 49
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=73.91 E-value=8.9 Score=22.52 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=33.4
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC--c----CCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN--V----IPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~--~----lp~~~~~m~~ 67 (73)
...-|+.+.||+++..-|..+-++++++---+|.+. . +-..+.++++
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 344699999999999999999999987654455542 2 2244556654
No 50
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.82 E-value=5.5 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=31.6
Q ss_pred ecCCCChhhHHHHHHhhh--cCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 25 VPSDLTVGQFYFLIRKRV--QLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L--~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
|+.+.||+++...|.... ++++++-=.+| ++.....+.++++.
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~-~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQRLIY-SGKLLLDHQCLRDL 70 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE-TTEECCSSSCHHHH
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeEEEE-CCEECcCcCCHHHH
Confidence 559999999999999998 88876544444 44444566777764
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=73.05 E-value=6.5 Score=23.17 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.4
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 93 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 93 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTEECCSSCBTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHH
Confidence 45589999999999999999999987655554 4433344555543
No 52
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.95 E-value=6.2 Score=23.68 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=34.3
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|.++.||+++...|..+-++++++--.+|- +.....+.++++
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~-Gk~L~D~~TL~d 86 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW-YTIFKDHVSLGD 86 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET-TEECCSSCBHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC-CEECCCCCCHHH
Confidence 355889999999999999999999876555544 444466777775
No 53
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.85 E-value=6.7 Score=22.07 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=31.7
Q ss_pred eeeecCC-----CChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSD-----LTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~-----~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+ .||+++...|..+.++++++--.+|-+..+...+.++++
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~ 70 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSA 70 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHH
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHH
Confidence 3457774 999999999999999987654444433345444556765
No 54
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=72.09 E-value=3.5 Score=22.57 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.6
Q ss_pred HHHHhhhcCCCCCeEEEEEcC
Q psy6336 36 FLIRKRVQLRPEDALFFFVNN 56 (73)
Q Consensus 36 ~~iRk~L~L~~~~alfl~Vn~ 56 (73)
.-+|++|++.+++.+.+++++
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999999874
No 55
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.23 E-value=7.5 Score=22.69 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 38 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 81 (106)
T 1ttn_A 38 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-SGRPLTDKMKFEE 81 (106)
T ss_dssp EEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-TTEECCTTSHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHH
Confidence 4589999999999999999999877555554 4444455667665
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=69.92 E-value=5.5 Score=24.51 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=32.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEE-EEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl-~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+ |-++.....+.++++
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~ 62 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGG
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHH
Confidence 458899999999999999999998655544 524433355556554
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=69.81 E-value=5.7 Score=23.50 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.4
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 93 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 93 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE-CCEECCCCCcHHH
Confidence 35589999999999999999999987554444 4444444555543
No 58
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=69.41 E-value=8.8 Score=24.14 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=34.8
Q ss_pred CCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEc
Q psy6336 14 RIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 55 (73)
Q Consensus 14 ~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn 55 (73)
.+|+..-+...|..+.+|++.+..|.+++++...+- |-++.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 377888888999999999999999999999996655 56664
No 59
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=69.30 E-value=14 Score=21.44 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=33.7
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEc-Cc----CCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NV----IPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn-~~----lp~~~~~m~~ 67 (73)
...-|+.+.||+++..-|..+.++++++---+|.+ +. +-..+.++++
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 34559999999999999999999998754444443 22 3455666765
No 60
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=69.25 E-value=16 Score=22.04 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=37.6
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..|-|.++.+++.+.....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 39 i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L-~~~~Tp~dl 85 (110)
T 2k8h_A 39 MFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI-DETKTPEEL 85 (110)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC-CSSSHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 45789999999999999999999999987777755555 445677665
No 61
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=68.51 E-value=6.9 Score=23.36 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=33.9
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
..+-+.++.||+++...|..+.++++++---.| ++..-..+.+++
T Consensus 34 ~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~ 78 (93)
T 3plu_A 34 VRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE 78 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH
Confidence 345688999999999999999999998766666 444445555554
No 62
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=68.36 E-value=4.8 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHhhhcCCCCCeEEEEEcC
Q psy6336 36 FLIRKRVQLRPEDALFFFVNN 56 (73)
Q Consensus 36 ~~iRk~L~L~~~~alfl~Vn~ 56 (73)
.-+|++|++.+++.+.+.+++
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999999874
No 63
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.16 E-value=4.8 Score=23.44 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=32.5
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
..+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 82 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF-AGKILKDQDTLSQ 82 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE-TTEEECTTCCTGG
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE-CCEECCCcCcHHH
Confidence 345689999999999999999999987554444 4433344555543
No 64
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.82 E-value=4 Score=23.54 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=30.7
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||++|...|..+.++++++--.+|-+..+ .+.++++
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L--dd~tL~~ 73 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP--EDKTLRE 73 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC--SSSBHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC--CcCcHHH
Confidence 458999999999999999999987644333322334 3446665
No 65
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.71 E-value=8.2 Score=22.92 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred eecCCCChhhHHHHHHhhhcCCCCCeEEEEEc-CcCCCCcchHHHH
Q psy6336 24 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTSATMGSL 68 (73)
Q Consensus 24 LVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn-~~lp~~~~~m~~l 68 (73)
-|+.+.|+++|..-|..+-+++|++.-.++.. +. ...+.+++++
T Consensus 24 ~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~ 68 (100)
T 2dzm_A 24 VLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL 68 (100)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH
T ss_pred EECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc
Confidence 48889999999999999999998765444322 33 3556677654
No 66
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=67.67 E-value=4.7 Score=23.71 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=30.5
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 59 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIKLIY-SGKVLQDSKTVSE 59 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-TTEECCTTSBTTT
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCEECCCcCCHHH
Confidence 4588999999999999999998876544444 4433344555543
No 67
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.60 E-value=6.2 Score=24.07 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=31.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~d 89 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF-AGKILKDQDTLIQ 89 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE-TTEEESTTSCGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE-CCEEcCCCCCHHH
Confidence 35589999999999999999999877655554 4433344555543
No 68
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.44 E-value=5.1 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCCCeEEEEEcC-cCCCCcchHHHHHhhh
Q psy6336 45 RPEDALFFFVNN-VIPPTSATMGSLYQEI 72 (73)
Q Consensus 45 ~~~~alfl~Vn~-~lp~~~~~m~~lY~~f 72 (73)
+|+..|++||+| .-+-+...|.+++..|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~y 49 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPV 49 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTT
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhc
Confidence 468899999998 4444555666666655
No 69
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=67.11 E-value=13 Score=20.15 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=30.6
Q ss_pred eeeecCCCChhhHHHHHHhh---hcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKR---VQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~---L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++...|..+ -++++++--.+| ++.....+.++++
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 66 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGKILSDDVPIRD 66 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE-CCEECcCCCCHHH
Confidence 35589999999999999998 467765544444 4443345555554
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=66.52 E-value=9.1 Score=22.63 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=32.9
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-EGIFIKDSNSLAY 93 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-TTEEECTTSBHHH
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEE-CCEECCCCCCHHH
Confidence 4589999999999999999999887655444 4433355667765
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=64.47 E-value=21 Score=21.52 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=32.8
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
-.+-|.++.||+++..-|-.+.++++++-= ++.++.+...+.+++
T Consensus 39 i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~ 83 (105)
T 4dbg_A 39 IWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLH 83 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTG
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHH
Confidence 345689999999999999999999987554 333455555555554
No 72
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=64.38 E-value=13 Score=21.93 Aligned_cols=48 Identities=4% Similarity=0.092 Sum_probs=35.8
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEE-EEcC----cCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNN----VIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl-~Vn~----~lp~~~~~m~~l 68 (73)
--+-+|.+.++.++..-+|.+.++.+++.+-+ |++. ..-+.+..+.+-
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eA 70 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEA 70 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHH
Confidence 35679999999999999999999998887766 4552 234555555543
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=68.08 E-value=1.4 Score=23.81 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=30.9
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.|++++...|.++.++++++--.+|-+..+ ..+.++++
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L-~d~~tL~~ 58 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKEL-PNHLTVQN 58 (76)
Confidence 447889999999999999999887655545433333 44555554
No 74
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=63.49 E-value=16 Score=19.84 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=33.6
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
...|-|.++.+++.+.....++.++++++--|+|=++.+.
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 3567899999999999999999999998888887655543
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=62.41 E-value=11 Score=22.43 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=32.9
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
..+-|+.+.|++++...|.++.++++++--++| ++.....+.++++
T Consensus 89 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~~L~d~~tL~~ 134 (152)
T 3b08_A 89 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 134 (152)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE-CCEECCCCCCHHH
Confidence 345689999999999999999999987655555 4433344555543
No 76
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=62.19 E-value=4.4 Score=24.22 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=30.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
.-|+.+.||+++...|..+.++++++--.+| ++.....+.+++
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~ 66 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIW-AGKQLEDGRTLS 66 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEE-CCEECCCCCcHH
Confidence 3488899999999999999999877554444 333223444444
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=61.78 E-value=7.6 Score=23.24 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.|++++...|..+.++++++--.+| ++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 58 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-CCeECcCcccHHH
Confidence 34589999999999999999999987655544 4433344555543
No 78
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=61.16 E-value=6.8 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=20.9
Q ss_pred hhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhh
Q psy6336 40 KRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEI 72 (73)
Q Consensus 40 k~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f 72 (73)
.-+.=.++.-|.+||+| .-+-+...|.+++..|
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~y 52 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF 52 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTS
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCc
Confidence 33445678999999998 5566666777777665
No 79
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.90 E-value=20 Score=20.29 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=33.0
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCC-CeEEEE
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPE-DALFFF 53 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~-~alfl~ 53 (73)
.|.|.|--...+ .....=|+.+.||+++..-|..+-+++++ +.|++.
T Consensus 7 ~v~l~I~~~~~~-----~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLNS-----FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTSS-----SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCCC-----eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 466766443221 23445699999999999999999999976 455543
No 80
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=60.86 E-value=3.7 Score=24.94 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.6
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCe
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDA 49 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~a 49 (73)
-...+||.+.++.+|..-|++|+++..++.
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~ 53 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNTHNNN 53 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCSSC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCCcccc
Confidence 345679999999999999999999864443
No 81
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=59.95 E-value=13 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=31.0
Q ss_pred eeeecC-CCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 22 KYLVPS-DLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 22 KfLVp~-~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
.+-|++ +.||+++...|....++++++--.+| ++.....+.+++
T Consensus 44 ~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk~L~D~~tL~ 88 (111)
T 1we6_A 44 EITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAGFLKDNMSLA 88 (111)
T ss_dssp EEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSSBCCTTSBTT
T ss_pred EEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCEECCCCCcHH
Confidence 456887 99999999999999999876544333 444444444544
No 82
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.60 E-value=14 Score=23.04 Aligned_cols=44 Identities=5% Similarity=-0.012 Sum_probs=35.1
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.-++.+.|+++|...+-...+.+++.--.+|-+..+ ..+.|+++
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiL-KD~eTL~~ 74 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKIL-KNNETLVQ 74 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEE-CSSCCHHH
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEc-CCcchHHH
Confidence 348899999999999999999998887777765555 56667765
No 83
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=59.36 E-value=10 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=26.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCc
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS 62 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~ 62 (73)
.=+|...|++++. ++|++++++.+ +.+|+...+.|
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~Vv-V~vNG~~v~~d 49 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEVT-VLVDGRPVPED 49 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCCC-EECCCCCCCTT
T ss_pred EEcCCCCcHHHHH----HHcCCCcceEE-EEECCEECCHH
Confidence 5689999999854 68899999885 77897544444
No 84
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=58.32 E-value=23 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=33.4
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
...|-|.++.+++.+.....++.++++++--|+|=++.+.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~ 56 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 56 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC
Confidence 4568899999999999999999999998877877555543
No 85
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=58.25 E-value=12 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=33.2
Q ss_pred ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
|..+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 18 v~~sdTV~~lK~kI~~~egIP~~qQrLi~-~Gk~LeD~~TLsd 59 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGILKRPPEEQRLYK-DDQLLDDGKTLGE 59 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBHHH
T ss_pred eCCcChHHHHHHHHHHHhCCCHHHeEEEE-CCeECCCCCCHHH
Confidence 89999999999999999999987654444 5555567777775
No 86
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=58.25 E-value=8.8 Score=23.88 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=35.7
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCC-CeEEEEEc--Cc-----CCCCcchHHHHHh
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPE-DALFFFVN--NV-----IPPTSATMGSLYQ 70 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~-~alfl~Vn--~~-----lp~~~~~m~~lY~ 70 (73)
-|-|++++|+++|...+-+.++++++ ..|...+| |. ++..+++|++.+.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~ 115 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMI 115 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTH
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHH
Confidence 47899999999999999999999876 55666665 22 3444555555443
No 87
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.03 E-value=9.1 Score=21.75 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=28.2
Q ss_pred eeeecCCCChhhHHHHHHhh---hcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKR---VQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~---L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
.+-|+.+.||+++...|..+ -++++++--.+| ++.....+.+++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~-~Gk~L~D~~tL~ 60 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY-AGKILNDDTALK 60 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-TTEECCTTSBGG
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE-CCEECCCcCcHH
Confidence 34588999999999999988 456665444333 333334444444
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=57.49 E-value=18 Score=20.97 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
..|-|.++.+++.+....+++.++++++--|+|-++.+-
T Consensus 20 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~ 58 (94)
T 2io1_B 20 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 58 (94)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC
Confidence 467899999999999999999999998877877655543
No 89
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=57.35 E-value=8.2 Score=22.20 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCC
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLR 45 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~ 45 (73)
..||.+.++.+|..-|++|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999975
No 90
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=57.24 E-value=16 Score=22.36 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=32.9
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~~L~d~~tL~~ 139 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGE 139 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE-CCeecCCCCCHHH
Confidence 35589999999999999999999987655555 4443344555554
No 91
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=54.28 E-value=10 Score=24.18 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=32.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 58 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTEECCTTSBGGG
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCccccCcCcHHH
Confidence 4588999999999999999999987765554 4433355556654
No 92
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=53.89 E-value=32 Score=20.31 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=35.9
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
..|-|.++-+++.+...-+++.+++++.--|+| ++.-...++|.+++
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 368899999999999999999999998766766 54333445566554
No 93
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=53.14 E-value=14 Score=20.04 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=24.1
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcc
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 63 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~ 63 (73)
.+-+|...|++++.. .|+++++. +-+.+|+...+.+.
T Consensus 17 ~~~~~~~~tv~~Ll~----~l~~~~~~-v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 17 ILESGAPRRIKDVLG----ELEIPIET-VVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEESSCCBHHHHHH----HTTCCTTT-EEEEETTEECCTTS
T ss_pred eEECCCCCcHHHHHH----HhCCCCCC-EEEEECCEECCCcc
Confidence 356788889999765 45666554 45788985444333
No 94
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=52.53 E-value=14 Score=21.09 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=24.2
Q ss_pred ecCCCChhhHHHHHHhhhcCCCCC-eEEE
Q psy6336 25 VPSDLTVGQFYFLIRKRVQLRPED-ALFF 52 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L~L~~~~-alfl 52 (73)
++.+.|++++..-|..+-+.++++ .|.+
T Consensus 21 ~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp EETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred cCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 799999999999999999999864 4444
No 95
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=52.47 E-value=5.1 Score=23.64 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=24.2
Q ss_pred eeec-CCCChhhHHHHHHhhhcCCCC-CeEEE
Q psy6336 23 YLVP-SDLTVGQFYFLIRKRVQLRPE-DALFF 52 (73)
Q Consensus 23 fLVp-~~~tv~qf~~~iRk~L~L~~~-~alfl 52 (73)
.-|+ .+.|++++..-|..+.+++++ +.|++
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 4478 899999999999999998865 45543
No 96
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=52.12 E-value=3 Score=25.35 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 58 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (128)
T ss_dssp ---------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEE-CCEECCCCCchhh
Confidence 4588899999999999999888876544444 3333344455544
No 97
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=51.07 E-value=20 Score=22.31 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=32.3
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus 35 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~-~g~~L~d~~tL~~ 78 (172)
T 3u30_A 35 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 78 (172)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTGG
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEE-CCccccccCCHhH
Confidence 4589999999999999999999987654444 4444455555554
No 98
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.61 E-value=13 Score=22.35 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred Ccceeee--ecCCCChhhHHHHHHhhhcCCCC--------------CeEEEEEcC-cCCCCcchHHH
Q psy6336 18 LDKKKYL--VPSDLTVGQFYFLIRKRVQLRPE--------------DALFFFVNN-VIPPTSATMGS 67 (73)
Q Consensus 18 Ldk~KfL--Vp~~~tv~qf~~~iRk~L~L~~~--------------~alfl~Vn~-~lp~~~~~m~~ 67 (73)
++.++|- |+++.||+++...|..+.+++++ +.+-|.-++ .|-..+.++++
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d 81 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH
Confidence 3444443 88999999999999999887663 133444344 45445677776
No 99
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=50.37 E-value=34 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=31.7
Q ss_pred ee-ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336 23 YL-VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 66 (73)
Q Consensus 23 fL-Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~ 66 (73)
|+ +..+.||+++...|..+.++++++--.+|-+ .....+.|++
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~G-k~LeD~kTL~ 58 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYKDD-QLLDDGKTLG 58 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETT-EECCTTSBTT
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCC-eECCCcCCHH
Confidence 44 7899999999999999999998766555543 3334455554
No 100
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.35 E-value=39 Score=20.04 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=35.9
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+...=|+.+.||+++..-|..+.++++++--.+|- +.....+.+|++
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~-GKiL~D~~TL~~ 77 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGLQENYIKIVIN-KKQLQLGKTLEE 77 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET-TEECCTTSBHHH
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC-CeECCCCCcHHH
Confidence 33445899999999999999999999877666654 444466777776
No 101
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=49.19 E-value=17 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred eeeecCCCChhhHHHHHHhhh--cCC-CCCeEEEEEcCcCCCCcchHHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRV--QLR-PEDALFFFVNNVIPPTSATMGSL 68 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L--~L~-~~~alfl~Vn~~lp~~~~~m~~l 68 (73)
.+-|+.+.||+++...|..++ ..+ .++.| +| ++.....+.++++.
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL-Iy-~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL-VY-SGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE-EE-TTEEECTTSBTHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE-EE-CCEECCCCCCHHHH
Confidence 344699999999999999876 343 33444 33 44444566777763
No 102
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=49.16 E-value=12 Score=21.91 Aligned_cols=42 Identities=5% Similarity=0.005 Sum_probs=29.0
Q ss_pred ecCCCChhhHHHHH-HhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 25 VPSDLTVGQFYFLI-RKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 25 Vp~~~tv~qf~~~i-Rk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
|+.+.||+++..-| ..+-++++++--.+| ++.....+.++++
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk~L~D~~tL~d 80 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIKLLL-KGKVLHDNLFLSD 80 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEEEEE-TTEEECTTCBGGG
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEEEEE-CCEECcCcCCHHH
Confidence 45999999999999 777788877655555 4443345555554
No 103
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=48.13 E-value=27 Score=20.01 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=32.4
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
..|-|.++.+++.+....+++.++++++--|+|=+..+-
T Consensus 30 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 68 (93)
T 2d07_B 30 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 68 (93)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC
Confidence 457899999999999999999999998777777555543
No 104
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=46.21 E-value=4.2 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~d 58 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (152)
T ss_dssp ---------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEEccccCcHHH
Confidence 3488899999999999999999887654444 4433345566654
No 105
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=45.80 E-value=19 Score=20.00 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=23.1
Q ss_pred ecCCCChhhHHHHHHhhhcCCCCCeEEEE
Q psy6336 25 VPSDLTVGQFYFLIRKRVQLRPEDALFFF 53 (73)
Q Consensus 25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~ 53 (73)
++.+.|++++...|.++.+++++.--.+|
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 67899999999999999998765433344
No 106
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=45.22 E-value=23 Score=28.97 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=33.5
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCC-----CeEEEEEcCcCC------CCcchHHHHHhh
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPE-----DALFFFVNNVIP------PTSATMGSLYQE 71 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~-----~alfl~Vn~~lp------~~~~~m~~lY~~ 71 (73)
+|-|..++|+.+|+..++++.++... .++ ||- .++| -.+.+|++|++.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~-ly~-~~~~~~~~~~~l~~~l~~l~~~ 979 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSL-LYA-SFFPPKKLKERLNLPITQLVKL 979 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTEE-EEE-TTCCHHHHHHHTTSBHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCcE-EEe-cCCCchhhHHhccCCHHHHHHh
Confidence 45677799999999999998887543 121 332 3444 357789999875
No 107
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.08 E-value=25 Score=26.37 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=29.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEE
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 54 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~V 54 (73)
..|+.+.+++++...||++++++++..|=+|=
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyE 182 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYE 182 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEE
Confidence 57899999999999999999999998888874
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=43.66 E-value=14 Score=20.81 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=23.3
Q ss_pred eecCCCChhhHHHHHHhhhcCCC-CCeEEE
Q psy6336 24 LVPSDLTVGQFYFLIRKRVQLRP-EDALFF 52 (73)
Q Consensus 24 LVp~~~tv~qf~~~iRk~L~L~~-~~alfl 52 (73)
-++++-|++++..-|.+.++.+. .+++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 37788899999999999999874 456654
No 109
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=43.65 E-value=25 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=32.0
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~-~Gk~L~D~~tL~d 163 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 163 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTEECCTTCBGGG
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEEEEE-CCEECCCCCCHHH
Confidence 4589999999999999999999876544444 4444445666654
No 110
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=42.05 E-value=42 Score=20.03 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=32.6
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
..|-|.++.++..+.....++.++++++--|+|-++.+.
T Consensus 43 i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~ 81 (106)
T 2eke_C 43 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ 81 (106)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC
Confidence 457799999999999999999999999877887554543
No 111
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=41.99 E-value=38 Score=20.04 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=32.9
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN 56 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~ 56 (73)
-.++.+-++-|+..|..-|.++-++++++-.+||=+.
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 3568889999999999999999999999889998874
No 112
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=40.19 E-value=22 Score=23.52 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.2
Q ss_pred HHHHhhhcCCCCCeEEEEEc
Q psy6336 36 FLIRKRVQLRPEDALFFFVN 55 (73)
Q Consensus 36 ~~iRk~L~L~~~~alfl~Vn 55 (73)
.-+|++|++.+++.+.++++
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999997
No 113
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.72 E-value=42 Score=19.83 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=32.8
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP 59 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp 59 (73)
..|-|.++.++..+.....++.++++++--|+|=+..+-
T Consensus 37 i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~ 75 (104)
T 1wz0_A 37 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 75 (104)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC
T ss_pred EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 457899999999999999999999998877877655543
No 114
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=39.23 E-value=23 Score=21.95 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=40.3
Q ss_pred cceeee-ecCCCChhhHHHHHHhhhcCCC------------------CCeEEEEEc--C-cCCCCcchHHHHHhhh
Q psy6336 19 DKKKYL-VPSDLTVGQFYFLIRKRVQLRP------------------EDALFFFVN--N-VIPPTSATMGSLYQEI 72 (73)
Q Consensus 19 dk~KfL-Vp~~~tv~qf~~~iRk~L~L~~------------------~~alfl~Vn--~-~lp~~~~~m~~lY~~f 72 (73)
...+|+ -+.+.||.++-..|.-||.|+. +=.||+.-+ + ...+.++++.++-|+|
T Consensus 21 ~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneKy 96 (111)
T 3gs2_A 21 AQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEKY 96 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHHH
T ss_pred hceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhhh
Confidence 355777 7899999999999998887761 223444433 2 3688999999999887
No 115
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=37.35 E-value=33 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=19.5
Q ss_pred CCCCeEEEEEcC-cCCCCcchHHHHHhhh
Q psy6336 45 RPEDALFFFVNN-VIPPTSATMGSLYQEI 72 (73)
Q Consensus 45 ~~~~alfl~Vn~-~lp~~~~~m~~lY~~f 72 (73)
+++..+.|||+| .-+-+...|.+++..|
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~f 70 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKF 70 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhc
Confidence 467889999998 4444555667776665
No 116
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=34.83 E-value=18 Score=20.50 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=29.4
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCC
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT 61 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~ 61 (73)
...+.+|+..|+.+|.+.|...+. .+++..-||+.+.+.
T Consensus 15 G~~~~lp~GaT~~D~A~~Ih~~lg---~~~v~AkVNG~~v~L 53 (78)
T 3hvz_A 15 GDVISLPIGSTVIDFAYAIHSAVG---NRMIGAKVDGRIVPI 53 (78)
T ss_dssp SCEEEEETTCBHHHHHHHHCHHHH---HTEEEEEETTEEECT
T ss_pred CCEEEecCCCCHHHHHHHhhhhhh---cceEEEEECCEEcCC
Confidence 455689999999999999987774 456777888754433
No 117
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=34.18 E-value=80 Score=20.19 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=24.7
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPED 48 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~ 48 (73)
..+.||.+.|+.++-.+|+.-++...+.
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 5678999999999999999999987654
No 118
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.42 E-value=30 Score=25.94 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=36.0
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCC--CCeEEEE-E-cC---cCCCCcchHHHHHh
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRP--EDALFFF-V-NN---VIPPTSATMGSLYQ 70 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~--~~alfl~-V-n~---~lp~~~~~m~~lY~ 70 (73)
...++||++-||+++..-++++.++++ ...|-++ | |+ ...+.+..++.|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 677899999999999999999999975 3334333 2 33 24555556665543
No 119
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.08 E-value=22 Score=20.15 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=28.0
Q ss_pred eecCCCChhhHHHHHHhh-hcCCCCCeEEEEEc-CcCCCCcchHH
Q psy6336 24 LVPSDLTVGQFYFLIRKR-VQLRPEDALFFFVN-NVIPPTSATMG 66 (73)
Q Consensus 24 LVp~~~tv~qf~~~iRk~-L~L~~~~alfl~Vn-~~lp~~~~~m~ 66 (73)
-|+++.||+++...|.+. =++++++.-.+|.. +.....+.+++
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~ 73 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQ 73 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTT
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHH
Confidence 489999999999999984 56776654444443 23333444443
No 120
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=31.30 E-value=38 Score=21.17 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=29.8
Q ss_pred eeeeecCCCChhhHHHHHHh-hhc-------CCCCCeEEEEEcC-cCCCCcchHHH
Q psy6336 21 KKYLVPSDLTVGQFYFLIRK-RVQ-------LRPEDALFFFVNN-VIPPTSATMGS 67 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk-~L~-------L~~~~alfl~Vn~-~lp~~~~~m~~ 67 (73)
.-|.||+++++++|+.-+=. -.. ++=+++-++.-++ ..|-.+.++++
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLae 95 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKE 95 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTT
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHH
Confidence 45789999999999864432 222 2223555555444 67877777754
No 121
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=30.54 E-value=46 Score=17.43 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=27.0
Q ss_pred ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCc
Q psy6336 20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS 62 (73)
Q Consensus 20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~ 62 (73)
...+-+|...|+.++..-+...+ +.+++-.-||+.+.+.+
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l---~~~~vaa~vNg~lvdl~ 49 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDL---GDHCIGAKVNHKLVPLS 49 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHH---HHTEEEEEETTEECCTT
T ss_pred CCEEEcCCCCcHHHHHHHHhhcc---ccceEEEEECCEEeCCC
Confidence 34567899999999988764443 23566667887654444
No 122
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.17 E-value=43 Score=19.07 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=24.8
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEE
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFF 53 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~ 53 (73)
+-|+.+.||++|...|..+-++++++--.+|
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4489999999999999999999876443333
No 123
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=29.52 E-value=30 Score=19.17 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=26.7
Q ss_pred eeeecCCCChhhHHHHHHhhhc------CCCC----CeEEEEEcCcCCCCcc
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQ------LRPE----DALFFFVNNVIPPTSA 63 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~------L~~~----~alfl~Vn~~lp~~~~ 63 (73)
.+-+|...|++++...|..+-. ++.+ ..+-++||+...+.+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 3457788999999998876642 2221 2367889985433333
No 124
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=29.45 E-value=30 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=31.1
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 67 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~ 67 (73)
.-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 248 leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~-~Gk~L~D~~TLsd 291 (307)
T 3ai5_A 248 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 291 (307)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBTGG
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEe-CCeecCCCCCHHH
Confidence 4489999999999999999999876544444 4433344555543
No 125
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=29.13 E-value=12 Score=16.24 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=10.9
Q ss_pred HhhhcCCCCCeEEE
Q psy6336 39 RKRVQLRPEDALFF 52 (73)
Q Consensus 39 Rk~L~L~~~~alfl 52 (73)
|+++.+.|.+++|-
T Consensus 4 rk~i~iGpG~~fy~ 17 (23)
T 3mly_P 4 KKSIKIRPRQAFYA 17 (26)
T ss_pred EEEEeecCCeeEEe
Confidence 67788889888873
No 126
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=29.08 E-value=32 Score=25.09 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=16.2
Q ss_pred HHHhhhcCCCCCeEEEEEc
Q psy6336 37 LIRKRVQLRPEDALFFFVN 55 (73)
Q Consensus 37 ~iRk~L~L~~~~alfl~Vn 55 (73)
-|||||+|..+.+.|||.-
T Consensus 376 ~LRkklkl~~~~~~~l~~T 394 (410)
T 3ll7_A 376 ELRQRSKMADGGEKTLMGT 394 (410)
T ss_dssp HHHHHHTCCCCSSEEEEEE
T ss_pred HHHHhcCCCCCCcEEEEEE
Confidence 4999999998888888873
No 127
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=28.18 E-value=49 Score=18.23 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=18.0
Q ss_pred HHHHhhhcCCCCCeEEEEEcC
Q psy6336 36 FLIRKRVQLRPEDALFFFVNN 56 (73)
Q Consensus 36 ~~iRk~L~L~~~~alfl~Vn~ 56 (73)
.-+|++|+|.+++.+.+.+.+
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~ 39 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVD 39 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 447899999999999998864
No 128
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=28.08 E-value=30 Score=18.64 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=22.6
Q ss_pred cCCCChhhHHHHHHhhhc-----CCCCCeEEEEEcCcCCCCcc
Q psy6336 26 PSDLTVGQFYFLIRKRVQ-----LRPEDALFFFVNNVIPPTSA 63 (73)
Q Consensus 26 p~~~tv~qf~~~iRk~L~-----L~~~~alfl~Vn~~lp~~~~ 63 (73)
+...|++++...+..+-. ++. ..+.+.||+...+.+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~~ 64 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFDH 64 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTTC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCCC
Confidence 567799998888765421 322 3456889984333333
No 129
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=27.38 E-value=13 Score=16.08 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=10.9
Q ss_pred HhhhcCCCCCeEEE
Q psy6336 39 RKRVQLRPEDALFF 52 (73)
Q Consensus 39 Rk~L~L~~~~alfl 52 (73)
|+++.+.|.+++|-
T Consensus 4 rk~i~iGpG~~fy~ 17 (23)
T 3uji_P 4 RKRIHIGPGRAFYT 17 (26)
T ss_pred EEEEeecCCeeEEe
Confidence 57788888888873
No 130
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=26.09 E-value=47 Score=18.87 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=26.6
Q ss_pred eeeecCCCChhhHHHHHHhhh-cCC---------CCCeEEEEEcCcCCCCcc
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRV-QLR---------PEDALFFFVNNVIPPTSA 63 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L-~L~---------~~~alfl~Vn~~lp~~~~ 63 (73)
.+-+|...|++++...+..+- .+. ..+.+-++||+...+.++
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 344688899999999887653 111 124566889985433343
No 131
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.67 E-value=60 Score=17.98 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=20.5
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCCeEE
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALF 51 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alf 51 (73)
.+-|+.+.||+++...|..+. ...+.|+
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~--~~~qrLi 48 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ--ESQMKLI 48 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST--TTTCEEE
T ss_pred EEEECCCCcHHHHHHHHHhhC--cCcEEEE
Confidence 345899999999999988765 4444443
No 132
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=24.53 E-value=52 Score=19.12 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHhhhcCCCCCeEEEEEcC
Q psy6336 35 YFLIRKRVQLRPEDALFFFVNN 56 (73)
Q Consensus 35 ~~~iRk~L~L~~~~alfl~Vn~ 56 (73)
-.-+|+.|++.+.+.+-+++.+
T Consensus 65 PkeiR~~lgi~~Gd~l~~~~~~ 86 (92)
T 2glw_A 65 PKALRDVIGIKPGEVIEVLLLG 86 (92)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEE
T ss_pred cHHHHHHcCCCCCCEEEEEEeC
Confidence 3568999999999999888764
No 133
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=23.34 E-value=1.6e+02 Score=19.16 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=34.1
Q ss_pred eeeecCCCChhhHHHHHHhhhcCCCCC--eEEEEEc-Cc---CCCCcchHHHH
Q psy6336 22 KYLVPSDLTVGQFYFLIRKRVQLRPED--ALFFFVN-NV---IPPTSATMGSL 68 (73)
Q Consensus 22 KfLVp~~~tv~qf~~~iRk~L~L~~~~--alfl~Vn-~~---lp~~~~~m~~l 68 (73)
...+.+..|+.++...+++.+++++++ .|+.+-+ ++ +-..+.++.+.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~ 195 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA 195 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh
Confidence 467899999999999999999999864 4444433 32 44456677664
No 134
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=22.01 E-value=54 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=17.7
Q ss_pred CeEEEEEcCc---CCCCcchHHHHHhhh
Q psy6336 48 DALFFFVNNV---IPPTSATMGSLYQEI 72 (73)
Q Consensus 48 ~alfl~Vn~~---lp~~~~~m~~lY~~f 72 (73)
...|+|||+. -+.....+.+.|+.|
T Consensus 257 ~~q~~fVNgR~v~~~~l~~ai~~~y~~~ 284 (348)
T 3na3_A 257 CIFLLFINHRLVESTSLRKAIETVYAAY 284 (348)
T ss_dssp CEEEEEETTEECCCTTHHHHHHHHHHTT
T ss_pred ccEEEEECCeEecCHHHHHHHHHHHHHh
Confidence 4579999984 345556677888765
No 135
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=21.83 E-value=20 Score=25.26 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=30.4
Q ss_pred eeecCCCChhhHHHHHHhhhcCCCCCeEEEE--EcCcCCCCcchHH
Q psy6336 23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFF--VNNVIPPTSATMG 66 (73)
Q Consensus 23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~--Vn~~lp~~~~~m~ 66 (73)
.-|+.+.|+++|...|....+.++++.=.++ .++.....+.+++
T Consensus 19 v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~ 64 (320)
T 3shq_A 19 VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKIS 64 (320)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHH
Confidence 3588999999999999999999886544342 2344444444443
No 136
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=21.22 E-value=1.5e+02 Score=17.96 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=32.6
Q ss_pred eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcC
Q psy6336 21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVI 58 (73)
Q Consensus 21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~l 58 (73)
..|-|-++.++..+.....+|.+++.++--|+|=++.+
T Consensus 53 v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI 90 (115)
T 3kyd_D 53 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 90 (115)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC
T ss_pred EEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC
Confidence 35889999999999999999999999988888855444
No 137
>3mlz_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 2.99A {Human immunodeficiency virus 1}
Probab=20.55 E-value=13 Score=16.40 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=10.2
Q ss_pred HhhhcCCCCCeEE
Q psy6336 39 RKRVQLRPEDALF 51 (73)
Q Consensus 39 Rk~L~L~~~~alf 51 (73)
|+++.+.|.+++|
T Consensus 5 rk~i~iGpG~~fy 17 (25)
T 3mlz_P 5 RKGIHIGPGRAFY 17 (26)
T ss_dssp CCCCEECTTCCCC
T ss_pred EEEEeecCCeeEE
Confidence 6778888888876
No 138
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.35 E-value=1.4e+02 Score=17.50 Aligned_cols=48 Identities=4% Similarity=0.047 Sum_probs=32.8
Q ss_pred eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEE
Q psy6336 2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 54 (73)
Q Consensus 2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~V 54 (73)
.|.|.|--..++ .....-++.+.||+++..-|..+-++++++---.|.
T Consensus 6 ~v~l~V~~~~~~-----~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 6 VYDLEITTNATD-----FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp EEEEEEEESSCC-----SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred EEEEEEEECCCC-----ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 366666443222 223346899999999999999999999865433343
No 139
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.27 E-value=64 Score=17.25 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=13.3
Q ss_pred cCCCChhhHHHHHHhh
Q psy6336 26 PSDLTVGQFYFLIRKR 41 (73)
Q Consensus 26 p~~~tv~qf~~~iRk~ 41 (73)
...+||.++...+|+|
T Consensus 10 l~klkV~eLK~~L~~r 25 (55)
T 2do1_A 10 LHKLKLAELKQECLAR 25 (55)
T ss_dssp TTTSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHc
Confidence 3578999999999876
Done!