RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6336
         (73 letters)



>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
          Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 116

 Score = 94.4 bits (235), Expect = 7e-28
 Identities = 38/67 (56%), Positives = 52/67 (77%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEK   ++I D+DK+KYLVPSD+TV QF ++IRKR+QL  E A+F FV+  +P +S T
Sbjct: 31 VIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYEK 97


>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
          GABARAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 89.8 bits (223), Expect = 5e-26
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 93 MGQLYQE 99


>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
           light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 74.8 bits (184), Expect = 4e-20
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 5   VIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTS 62
           VI+E+    + +  LDK K+LVP  + + +   +IR+R+QL    A F  VN + +   S
Sbjct: 32  VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVS 91

Query: 63  ATMGSLYQE 71
             +  +Y+ 
Sbjct: 92  TPISEVYES 100


>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
          GABA-aminotransferase {Escherichia coli [TaxId: 562]}
          Length = 425

 Score = 23.3 bits (49), Expect = 4.3
 Identities = 5/24 (20%), Positives = 14/24 (58%)

Query: 1  MMWRVIVEKAPKARIGDLDKKKYL 24
           +  +  ++A   R+ D++ ++YL
Sbjct: 20 QIHPIFADRAENCRVWDVEGREYL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,280
Number of extensions: 11287
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 4
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)