BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6337
(797 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 54/279 (19%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
+EIWN+VF+ + R + PL IDTG+G ER+ ++LQ K S ++ D+ PL++ E
Sbjct: 190 LEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGE 249
Query: 66 KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA 122
+VSG K YG F T D + R+++D+ R IT A++D + P + +R ++R A
Sbjct: 250 EVSGKK-YGEKFET------DVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 302
Query: 123 LLIS-----EDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLIL-GEESRIFDN 176
+ E+ F K LV +I+ + YPE++ S ++ I+ GEE R
Sbjct: 303 MRFGYKLGIENPFLYKGVDLV-------VDIMKEPYPELELSREFVKGIVKGEEKRFIKT 355
Query: 177 LRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK--QLARDPSITEISGDMAFTL 234
L+ G++Y+ + Q A + +SG FT
Sbjct: 356 LKA-----------------------------GMEYIQEVIQKALEEGRKTLSGKEVFTA 386
Query: 235 YDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 273
YDTYG ++I E+A K L + E F+ +L E +ER++
Sbjct: 387 YDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 425
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 54/279 (19%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
+EIWN+VF+ + R + PL IDTG+G ER+ ++LQ K S ++ D+ PL++ E
Sbjct: 191 LEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGE 250
Query: 66 KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA 122
+VSG K YG F T D + R+++D+ R IT A++D + P + +R ++R A
Sbjct: 251 EVSGKK-YGEKFET------DVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 303
Query: 123 LLIS-----EDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLIL-GEESRIFDN 176
+ E+ F K LV +I+ + YPE++ S ++ I+ GEE R
Sbjct: 304 MRFGYKLGIENPFLYKGVDLV-------VDIMKEPYPELELSREFVKGIVKGEEKRFIKT 356
Query: 177 LRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK--QLARDPSITEISGDMAFTL 234
L+ G++Y+ + Q A + +SG FT
Sbjct: 357 LKA-----------------------------GMEYIQEVIQKALEEGRKTLSGKEVFTA 387
Query: 235 YDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 273
YDTYG ++I E+A K L + E F+ +L E +ER++
Sbjct: 388 YDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 130/275 (47%), Gaps = 46/275 (16%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
+EIWN+VF + R + PL IDTG G ER+ ++LQ K S ++ D+ PL++ E
Sbjct: 191 LEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNSNFEIDIIFPLIQFGE 250
Query: 66 KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLI 125
+VSG K YG F T D + R+++D+ R IT A++D + P R V +L
Sbjct: 251 EVSGKK-YGEKFET------DVALRVIADHLRAITFAISDGVIPSNEG--RGYVIRRILR 301
Query: 126 SEDVFKVKQGKLVKELSYNIAEILGDV----YPEIQDSINKIQLIL-GEESRIFDNLRKA 180
F K G + Y +++ D+ YPE++ S ++ I+ GEE R L+
Sbjct: 302 RAXRFGYKLG-IENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIKTLKA- 359
Query: 181 AVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK--QLARDPSITEISGDMAFTLYDTY 238
G +Y+ + Q A + +SG FT YDTY
Sbjct: 360 ----------------------------GXEYIQEVIQKALEEGRKTLSGKEVFTAYDTY 391
Query: 239 GLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 273
G ++I E+A K L + E F+ +L E +ER++
Sbjct: 392 GFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 137/287 (47%), Gaps = 55/287 (19%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPL 60
D + IEIWNIVF+ R + T+ PL K +DTG+G ER+ +LQ+ S YD DLF L
Sbjct: 203 DGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTL 262
Query: 61 LETIEKVSGAKPYGRTFTTSNRTDL-DTSYRMLSDYSRMITVALADNMFPDATAK---LR 116
++ + KV+GA TDL + S R+++D+ R +AD + P + LR
Sbjct: 263 IQAVAKVTGA------------TDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 310
Query: 117 NVVRDALLISEDVFKVKQGKLV---KELSYNIAEILGDVYPEIQDSINKIQLILGEESRI 173
++R A V+ G ++ + Y + L DV + + + Q
Sbjct: 311 RIIRRA---------VRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQ--------- 352
Query: 174 FDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFT 233
A V++ ++KT E EQF E GL L L ++LA+ T + G+ AF
Sbjct: 353 ------AQVEQ---VLKT--EEEQFARTLERGLAL----LDEELAKLSGDT-LDGETAFR 396
Query: 234 LYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV 280
LYDTYG ++ ++ + + + FE + E +R +A+ AS
Sbjct: 397 LYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEE--QRRRAREASGF 441
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 136/287 (47%), Gaps = 55/287 (19%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPL 60
D + IEIWNIVF+ R + T+ PL K +DT +G ER+ +LQ+ S YD DLF L
Sbjct: 203 DGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTL 262
Query: 61 LETIEKVSGAKPYGRTFTTSNRTDL-DTSYRMLSDYSRMITVALADNMFPDATAK---LR 116
++ + KV+GA TDL + S R+++D+ R +AD + P + LR
Sbjct: 263 IQAVAKVTGA------------TDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 310
Query: 117 NVVRDALLISEDVFKVKQGKLV---KELSYNIAEILGDVYPEIQDSINKIQLILGEESRI 173
++R A V+ G ++ + Y + L DV + + + Q
Sbjct: 311 RIIRRA---------VRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQ--------- 352
Query: 174 FDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFT 233
A V++ ++KT E EQF E GL L L ++LA+ T + G+ AF
Sbjct: 353 ------AQVEQ---VLKT--EEEQFARTLERGLAL----LDEELAKLSGDT-LDGETAFR 396
Query: 234 LYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV 280
LYDTYG ++ ++ + + + FE + E +R +A+ AS
Sbjct: 397 LYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEE--QRRRAREASGF 441
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 133/630 (21%), Positives = 251/630 (39%), Gaps = 141/630 (22%)
Query: 6 IEIWNIVFISHKR------------VSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYD 53
+E+ +VF+ +K+ + + +P+ +DTG G ERLV + Q + YD
Sbjct: 209 LEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMETKVVDTGYGLERLVWMSQGTPTAYD 268
Query: 54 TDLFLPLLETIEKVSGAKPYGRTFTTSNR-----------------------------TD 84
L ++E ++K++G + N +
Sbjct: 269 AVLGY-VVEPLKKMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEE 327
Query: 85 LDTSYR------MLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLV 138
L+ + R ++D+++ +T LAD + P + K + R LLI + + +++ L
Sbjct: 328 LEKAIRPYELIYAIADHTKALTFMLADGVVP-SNVKAGYLAR--LLIRKSIRHLRELGLE 384
Query: 139 KELSYNIA---EILGDVYPEIQDSINKI-QLILGEESRIFDNLRKAAVKEWKPLVKTQPE 194
LS +A + L +PE ++ + I ++I EE + + LR+ + LV+ +
Sbjct: 385 VPLSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKKYAETLRRGS-----DLVRRE-- 437
Query: 195 LEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKL 254
+ L K+ I EI + T Y+++GL+ I++E+A + +
Sbjct: 438 ---------------IAKLKKK-----GIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGV 477
Query: 255 TL-CHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTXXXXXXXXXXXTNSKRYTF 313
+ + F + + ER+K + + D +L LK P T Y
Sbjct: 478 KVNIPDNFYSMVAKEAERTKEEKGEELVDFEL--LKDLP------------DTRRLYYED 523
Query: 314 PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQ 373
P + D +R + WV I D T Y GGQ
Sbjct: 524 PFMKE-------------FDAKVLRVIKD-------------WV--ILDATAFYPEGGGQ 555
Query: 374 IDDIGVAYLTNTTQENGK-VEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRL 432
D GV + NG+ V++ + + I+H +FK G+ ++D + R+
Sbjct: 556 PYDTGVLIV------NGREVKVTNVQKVGKVIIHKVEDPGAFK--EGMIVHGKIDWKRRI 607
Query: 433 GCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIN 491
MR HT +H+L AL RVL +Q ++ +D LD S Y + +S + + +E N
Sbjct: 608 QHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY-KRISEEELKEIEMLAN 666
Query: 492 DVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPD-DVILIDISDKENVISREPCCGTHV 550
++ + +V + + + G + P ++ ++ I D + + C GTH+
Sbjct: 667 RIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPGREIRVVKIEDWDV----QACGGTHL 722
Query: 551 FNTGHIESCTVIGYKSYNHGVRSIKCLTGE 580
+TG + ++ + GV I GE
Sbjct: 723 PSTGLVGPIKILRTERIQDGVERIIFACGE 752
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 133/614 (21%), Positives = 232/614 (37%), Gaps = 147/614 (23%)
Query: 19 VSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLF-----LPLLETIEKVS----- 68
+ + +P+ +DTG G ERLV + Q + YD L L + IEK+
Sbjct: 234 IXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILM 293
Query: 69 --------------GAKPYGRTFTTSNRT-----DLDTSYR------MLSDYSRMITVAL 103
G Y R + R +L+ + R ++D+++ +T L
Sbjct: 294 ENSRLAGMFDIEDLGDLRYLRE-QVAKRVGITVEELEKAIRPYELIYAIADHTKALTFML 352
Query: 104 ADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIA---EILGDVYPEIQDSI 160
AD + P + + R LLI + + +++ L LS +A L +PE +
Sbjct: 353 ADGVVP-SNVXAGYLAR--LLIRKSIRHLRELGLEVPLSEIVALHIXELHKTFPEFXEME 409
Query: 161 NKI-QLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLAR 219
+ I ++I EE + LR+ + LV+ + + L K+
Sbjct: 410 DIILEMIELEEKXYAETLRRGS-----DLVRRE-----------------IAKLKKK--- 444
Query: 220 DPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTL-CHEAFEQKLNELKERSKAKAAS 278
I EI + T Y+++GL+ I+ E+A + + + + F + + ER+K +
Sbjct: 445 --GIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGE 502
Query: 279 NVPDIDLMDLKHFPVTXXXXXXXXXXXTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIR 338
+ D +L LK P T Y P + D +R
Sbjct: 503 ELVDFEL--LKDLP------------DTRRLYYEDPFMXE-------------FDAXVLR 535
Query: 339 HARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGK-VEIGEL 397
WV I D T Y GGQ D GV + NG+ V + +
Sbjct: 536 VIXD-------------WV--ILDATAFYPEGGGQPYDTGVLIV------NGREVXVTNV 574
Query: 398 ASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT-CTY 456
+ I+H +F G+ +D R+ MR HT +H+L AL RVL +
Sbjct: 575 QXVGXVIIHXVEDPGAF--XEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVW 632
Query: 457 QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLT-- 514
Q ++ +D LD S Y ++ E +++A+++ ++ R + LP T
Sbjct: 633 QAGSQLTTDWARLDISHY------XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAE 686
Query: 515 --------HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS 566
V+PG ++ ++ I D + + GTH+ +TG + ++ +
Sbjct: 687 QXYGFRLYQGGVVPGR----EIRVVXIEDWDV----QAXGGTHLPSTGLVGPIXILRTER 738
Query: 567 YNHGVRSIKCLTGE 580
GV I GE
Sbjct: 739 IQDGVERIIFACGE 752
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 32/233 (13%)
Query: 359 LIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTP 418
+I +++ Y +GGQ +D+G YL GK E+ ++ +G ++H VV K
Sbjct: 529 VILNRSAFYPESGGQDNDVG--YLIAN---GGKFEVVDVLEADGVVLH---VVKGAKPEV 580
Query: 419 GLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVY--- 474
G + +D+ +R R H+ +H+L +L++VL +Q R + LD + +
Sbjct: 581 GTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRP 640
Query: 475 --GETLSVDSVAAVEKYINDVI----ADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDV 528
E ++ +A E N I D+++ +R+ L V PG +
Sbjct: 641 SEEEIKEIEXLANREILANKPIKWEWXDRIEAERKFGF-----RLYQGGVPPGR----KI 691
Query: 529 ILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGES 581
++ + D + C GTH +TG I ++ +S GV + GE+
Sbjct: 692 RVVQVGD-----DVQACGGTHCRSTGEIGXLKILKVESIQDGVIRFEFAAGEA 739
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 349 IQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFG 408
+++ NA ++ D+T Y T GGQ D G NG + EG + H
Sbjct: 23 LEIRDNA---ILLDQTIFYPTGGGQPHDRGTI--------NGVEVLDVYKDEEGNVWHVV 71
Query: 409 NVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL 452
FKV + +++ D R +L MR HT HLL L VL
Sbjct: 72 KEPEKFKVGDEVELKIDWDYRYKL--MRIHTGLHLLEHVLNEVL 113
>pdb|3Q5Z|A Chain A, Crystal Structure Of Virulent Allele Rop5b Pseudokinase
Domain
pdb|3Q60|A Chain A, Crystal Structure Of Virulent Allele Rop5b Pseudokinase
Domain Bound To Atp
Length = 371
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 590 KQLSAAVKQLAATI-NQNSEQTDEETLNQQNHEIKTLRELLEDD-----LPYAVHKQNDH 643
K+ +A V+ + AT+ QN+E T + L+Q ++K + L D L V + D
Sbjct: 31 KEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDF 90
Query: 644 LL------AELSKNVKLKLRQ--FAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPP 695
L AE S++ +L + FA R+ E E+ ++ L + DAV +Q+ PP
Sbjct: 91 ALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLL---LPSDAVAVQSQPP 147
Query: 696 LSQIS 700
+Q+S
Sbjct: 148 FAQLS 152
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 380 AYLTNTTQENGKVEIGELASLE----GKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 435
A L + +N K ++ L+ +E G + G V + G+ AR+RL +
Sbjct: 40 AQLISWKPQNAKQDVLWLSEVEPFKNGNAIR-GGVPICYPWFGGVKQPAHGTARIRLWQL 98
Query: 436 RAHTTS-H--LLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIND 492
+ S H L L L K VF+D+C L F+ YGE + AA+ Y N
Sbjct: 99 SHYYISVHKVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEE---SAQAALHTYFNI 155
Query: 493 VIADQVQVD 501
+QV+V
Sbjct: 156 GDINQVEVQ 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,187,106
Number of Sequences: 62578
Number of extensions: 895279
Number of successful extensions: 2387
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2361
Number of HSP's gapped (non-prelim): 28
length of query: 797
length of database: 14,973,337
effective HSP length: 107
effective length of query: 690
effective length of database: 8,277,491
effective search space: 5711468790
effective search space used: 5711468790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)