Query psy6337
Match_columns 797
No_of_seqs 322 out of 2136
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:47:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 6E-157 1E-161 1367.4 66.2 669 1-785 193-877 (879)
2 KOG0188|consensus 100.0 1E-155 3E-160 1297.5 55.6 685 1-785 198-893 (895)
3 PLN02900 alanyl-tRNA synthetas 100.0 3E-149 6E-154 1339.5 69.2 691 1-784 210-935 (936)
4 TIGR00344 alaS alanine--tRNA l 100.0 1E-146 2E-151 1314.8 67.3 655 1-761 184-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 1E-144 2E-149 1303.3 69.2 662 1-785 190-863 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 2E-141 5E-146 1271.6 64.1 648 6-783 204-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 2E-139 4E-144 1255.0 65.3 648 6-785 208-898 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 2E-106 4E-111 924.2 39.2 392 1-578 195-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 1.8E-90 4E-95 799.7 7.8 358 1-430 191-552 (552)
10 PLN02961 alanine-tRNA ligase 100.0 9.3E-47 2E-51 391.7 23.8 208 357-577 3-222 (223)
11 COG2872 Predicted metal-depend 100.0 1.6E-46 3.6E-51 388.1 22.6 211 358-583 26-239 (241)
12 KOG2105|consensus 100.0 1.1E-38 2.3E-43 326.4 31.3 347 356-765 43-395 (415)
13 PRK12305 thrS threonyl-tRNA sy 99.8 5.1E-18 1.1E-22 199.9 15.7 143 434-582 7-160 (575)
14 PLN02837 threonine-tRNA ligase 99.8 1.1E-17 2.3E-22 197.7 16.7 153 419-581 29-200 (614)
15 PRK00413 thrS threonyl-tRNA sy 99.7 4.6E-17 1E-21 194.1 16.9 163 415-583 50-226 (638)
16 PRK12444 threonyl-tRNA synthet 99.6 1.7E-15 3.6E-20 180.6 17.4 141 434-580 73-227 (639)
17 TIGR00418 thrS threonyl-tRNA s 99.6 6.2E-15 1.3E-19 173.5 12.0 135 437-581 1-153 (563)
18 PLN02908 threonyl-tRNA synthet 99.5 6.6E-13 1.4E-17 159.2 18.0 146 433-584 119-278 (686)
19 PF07973 tRNA_SAD: Threonyl an 99.4 1.4E-13 3E-18 106.8 3.9 44 528-575 1-44 (44)
20 COG0441 ThrS Threonyl-tRNA syn 99.2 5.6E-11 1.2E-15 138.1 12.4 136 433-579 26-171 (589)
21 smart00863 tRNA_SAD Threonyl a 99.1 2.4E-11 5.1E-16 94.3 3.3 44 528-575 1-44 (44)
22 PF02272 DHHA1: DHHA1 domain; 97.5 0.00022 4.7E-09 60.2 5.8 67 700-781 1-68 (68)
23 PRK14799 thrS threonyl-tRNA sy 96.5 0.0061 1.3E-07 71.9 8.3 87 461-581 30-121 (545)
24 KOG1637|consensus 93.9 0.029 6.3E-07 63.3 2.0 34 436-471 69-103 (560)
25 PRK09348 glyQ glycyl-tRNA synt 81.8 0.78 1.7E-05 48.5 1.8 32 27-59 153-184 (283)
26 TIGR00388 glyQ glycyl-tRNA syn 81.1 0.82 1.8E-05 48.6 1.6 28 31-59 154-181 (293)
27 cd00733 GlyRS_alpha_core Class 80.9 0.88 1.9E-05 48.0 1.8 28 27-54 149-176 (279)
28 PF02091 tRNA-synt_2e: Glycyl- 79.7 0.95 2E-05 48.1 1.6 28 27-54 148-175 (284)
29 COG0752 GlyQ Glycyl-tRNA synth 78.4 1.1 2.5E-05 46.9 1.7 23 32-54 159-181 (298)
30 TIGR00644 recJ single-stranded 70.7 48 0.001 39.5 12.9 71 700-786 351-422 (539)
31 KOG1501|consensus 70.1 5 0.00011 45.7 4.2 87 31-119 72-165 (636)
32 PF01411 tRNA-synt_2c: tRNA sy 50.5 3.2 6.9E-05 49.5 -1.8 55 6-62 143-200 (552)
33 PRK14908 glycyl-tRNA synthetas 47.0 9.8 0.00021 48.1 1.6 33 26-59 153-185 (1000)
34 cd00777 AspRS_core Asp tRNA sy 38.2 15 0.00033 39.9 1.2 29 30-58 248-276 (280)
35 PF01409 tRNA-synt_2d: tRNA sy 36.1 17 0.00038 38.8 1.2 21 30-50 212-232 (247)
36 KOG2783|consensus 33.8 20 0.00043 40.4 1.2 27 33-62 298-324 (436)
37 cd00776 AsxRS_core Asx tRNA sy 31.4 23 0.00049 39.4 1.2 28 30-57 290-317 (322)
38 PF03962 Mnd1: Mnd1 family; I 30.6 4.9E+02 0.011 26.7 10.7 25 636-660 103-127 (188)
39 PF00152 tRNA-synt_2: tRNA syn 29.3 29 0.00063 38.6 1.6 29 30-58 303-331 (335)
40 cd00669 Asp_Lys_Asn_RS_core As 28.8 28 0.00061 37.6 1.4 28 30-57 237-264 (269)
41 COG0016 PheS Phenylalanyl-tRNA 28.4 30 0.00065 38.7 1.5 17 33-49 304-320 (335)
42 TIGR00457 asnS asparaginyl-tRN 28.4 27 0.00058 40.7 1.2 28 30-57 417-444 (453)
43 PTZ00425 asparagine-tRNA ligas 28.2 28 0.0006 41.9 1.2 29 30-58 550-578 (586)
44 PLN02532 asparagine-tRNA synth 27.2 29 0.00063 42.0 1.2 29 30-58 597-625 (633)
45 PLN02603 asparaginyl-tRNA synt 27.1 30 0.00064 41.5 1.3 29 29-57 528-556 (565)
46 TIGR00458 aspS_arch aspartyl-t 27.1 30 0.00065 40.0 1.3 29 30-58 392-420 (428)
47 COG1190 LysU Lysyl-tRNA synthe 26.9 23 0.00051 41.3 0.4 27 34-61 472-498 (502)
48 PLN02850 aspartate-tRNA ligase 26.5 29 0.00064 41.3 1.1 29 30-58 494-522 (530)
49 PRK00488 pheS phenylalanyl-tRN 26.4 34 0.00074 38.3 1.5 23 27-49 293-323 (339)
50 PRK03932 asnC asparaginyl-tRNA 26.0 32 0.00069 40.1 1.2 28 30-57 414-441 (450)
51 COG0017 AsnS Aspartyl/asparagi 25.7 38 0.00082 39.2 1.7 32 28-59 397-428 (435)
52 PRK06462 asparagine synthetase 25.3 34 0.00074 38.2 1.3 28 30-57 299-326 (335)
53 PLN02221 asparaginyl-tRNA synt 24.9 32 0.0007 41.2 1.1 28 30-57 536-563 (572)
54 TIGR00499 lysS_bact lysyl-tRNA 24.6 33 0.00072 40.5 1.1 25 34-58 466-490 (496)
55 PTZ00401 aspartyl-tRNA synthet 23.9 36 0.00077 40.7 1.1 28 31-58 515-542 (550)
56 PLN02502 lysyl-tRNA synthetase 23.4 37 0.00081 40.6 1.2 25 33-57 522-546 (553)
57 PRK05159 aspC aspartyl-tRNA sy 23.1 40 0.00086 39.1 1.3 28 30-57 401-428 (437)
58 PRK12445 lysyl-tRNA synthetase 22.9 38 0.00083 40.1 1.1 25 34-58 475-499 (505)
59 cd00775 LysRS_core Lys_tRNA sy 22.6 42 0.00091 37.4 1.3 27 31-57 298-324 (329)
60 PRK00484 lysS lysyl-tRNA synth 21.7 40 0.00086 39.8 0.9 28 30-57 457-484 (491)
61 KOG4603|consensus 20.1 7.2E+02 0.016 25.3 9.0 37 616-659 103-139 (201)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-157 Score=1367.35 Aligned_cols=669 Identities=27% Similarity=0.444 Sum_probs=580.8
Q ss_pred CCCCeEEEeeeeeeeeccC-CCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccC
Q psy6337 1 DRNDLIEIWNIVFISHKRV-SADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTT 79 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~-~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~ 79 (797)
|++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|||||||+|.|||+.+++++|. .|..
T Consensus 193 d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~~---- 267 (879)
T COG0013 193 DGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYGE---- 267 (879)
T ss_pred CCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCCc----
Confidence 6899999999999999999 799999999999999999999999999999999999999999999999986 4532
Q ss_pred CCCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhh
Q psy6337 80 SNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 156 (797)
Q Consensus 80 ~~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel 156 (797)
+...++++|||||||+||++|||+||++|||+ ||||||||||+||+++|+... |||++|||++++.|+++||||
T Consensus 268 -~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~--~fl~~LV~~~~~~m~~~ypel 344 (879)
T COG0013 268 -DEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKE--PFLYKLVDTVIDEMGDAYPEL 344 (879)
T ss_pred -cccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhcHHH
Confidence 22334789999999999999999999999999 599999999999999998877 799999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhc
Q psy6337 157 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYD 236 (797)
Q Consensus 157 ~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~Lyd 236 (797)
.++++.|+++|+.||++|.+ ||++|+++|++.+++.++++.|||++||+|||
T Consensus 345 ~~~~~~I~~vl~~EEe~F~~----------------------------TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYD 396 (879)
T COG0013 345 KEKEDFIKEVLKLEEERFAK----------------------------TLERGLKLLEKELAKLKKSKTLDGEDAFKLYD 396 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHhhccCCccChHHheeehh
Confidence 99999999999999999988 57778899999888766447899999999999
Q ss_pred cCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCC--Ccchhhhc-ccCCCCCCCCCcceeeecCCCCcccc
Q psy6337 237 TYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASN--VPDIDLMD-LKHFPVTDDKYKYDYHYDTNSKRYTF 313 (797)
Q Consensus 237 TyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~--~~~~~~~~-~~~~~~T~~~~ky~~~y~~~~~~Y~~ 313 (797)
|||||+|||++||+++|++||+++|+.+|++||++||+.+... ......+. ....++| +|. +|+.
T Consensus 397 TyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~~~~~~~~~~~~~~~~~~~~~t------ef~------gY~~ 464 (879)
T COG0013 397 TYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASAGSGEGAKESEDLELIDKLPET------EFL------GYDD 464 (879)
T ss_pred cCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhccccccccchhhhhhhhccCCCc------eee------eccc
Confidence 9999999999999999999999999999999999998753111 00111111 1123444 333 5677
Q ss_pred cccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEE
Q psy6337 314 PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVE 393 (797)
Q Consensus 314 ~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~ 393 (797)
+.++++|++|+.++.. |+++. +|+.++||||+||||||||||++|+|+|..+++ ..|.
T Consensus 465 ~~~~~~i~~l~~~~~~-------v~~~~-----------~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~----~~~~ 522 (879)
T COG0013 465 LEMEFKVLVLFVDGKE-------VSELN-----------EGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGG----GRFE 522 (879)
T ss_pred ccceEEEEEEEecCcc-------ccccc-----------CCceEEEEEecCCccCCCCCccCceEEEEecCC----cEEE
Confidence 7889999999987753 44444 688899999999999999999999999998642 5899
Q ss_pred EEEEEEeC-CEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEe
Q psy6337 394 IGELASLE-GKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDF 471 (797)
Q Consensus 394 V~dv~~~~-g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df 471 (797)
|.||||.+ +.++|.+.... |.|++|+.|.+.|||+||..+|+||||||||++|||++| +|++|+||+++++++||||
T Consensus 523 V~dvqK~~~~~~vH~~~~~~-G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDf 601 (879)
T COG0013 523 VTDVQKVGNGVIVHKGKVES-GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDF 601 (879)
T ss_pred EEEEEEcCCceEEEEEeecc-CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEee
Confidence 99999997 89999999864 689999999999999999999999999999999999999 9999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccC
Q psy6337 472 SVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVF 551 (797)
Q Consensus 472 ~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~ 551 (797)
+|+ +++|.|+|.+||++||++|++|+||.+.+|++++|++. |++++|||+||+.||||+||+ +|+|+||||||.
T Consensus 602 sH~-~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig~----~SvElCGGTHv~ 675 (879)
T COG0013 602 SHY-KALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIGD----FSVELCGGTHVS 675 (879)
T ss_pred cCC-CCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEECC----ceeeccCCcccC
Confidence 987 79999999999999999999999999999999999777 999999999999999999999 999999999999
Q ss_pred CccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhh
Q psy6337 552 NTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLED 631 (797)
Q Consensus 552 nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~ 631 (797)
|||+||.|||++++++++|+|||+|+||..|++++++.++++.+++ ..++. + .++..++.
T Consensus 676 ~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a---~~lk~-~--------~~~~~kv~-------- 735 (879)
T COG0013 676 NTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIA---SLLKV-P--------PELLPKVE-------- 735 (879)
T ss_pred CccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHH---HHhCC-C--------hhHHHHHH--------
Confidence 9999999999999999999999999999999999999998887655 44442 1 11222343
Q ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEc-CCHHHHhccCccccC---CCcEE
Q psy6337 632 DLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK---CKEDTPYLVHYIR-DDAVEIQALPPLSQI---SKPVL 704 (797)
Q Consensus 632 ~i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~~~~-~~~~~L~~~~~~~~~---~~~v~ 704 (797)
.|.+++++++|++.+++++++......+.... ++++.++++..++ .+++.|+.++..++. +.+++
T Consensus 736 --------~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~viv 807 (879)
T COG0013 736 --------RLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIV 807 (879)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 46666788888888888766655555544332 5889999998888 588889887765543 44555
Q ss_pred EEEeeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHHHHHHHH
Q psy6337 705 VLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSAD 784 (797)
Q Consensus 705 l~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~ 784 (797)
+++..++|+.++|++++++ ..+++|++|+++++..+||||||+ | .+|||+|+++ ..+++|++.+..|.+
T Consensus 808 l~~~~~~Kv~~~~~v~~~~-~~~~~a~~lvk~la~~~gG~GGGr----~-d~Aqggg~d~-----~~~~~al~~~~~~i~ 876 (879)
T COG0013 808 LASVADGKVSLVVAVSKDL-TDKVKAGELVKELAAIVGGKGGGR----P-DMAQGGGKDP-----EKLDEALELVIEWVK 876 (879)
T ss_pred EEEecCCeEEEEEEechhh-hcccCHHHHHHHHHHhcCCCCCCc----h-hhheeCCCCc-----ccHHHHHHHHHHHHH
Confidence 6677778999999999655 455999999999999999999986 3 5899999997 789999999998876
Q ss_pred h
Q psy6337 785 E 785 (797)
Q Consensus 785 ~ 785 (797)
.
T Consensus 877 ~ 877 (879)
T COG0013 877 E 877 (879)
T ss_pred h
Confidence 4
No 2
>KOG0188|consensus
Probab=100.00 E-value=1.3e-155 Score=1297.46 Aligned_cols=685 Identities=32% Similarity=0.495 Sum_probs=598.2
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|||+++||||||||||||++||+|.|||+||||||||||||+||||||.||||||+|.|||++|++.++++ |+| +
T Consensus 198 ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~ 272 (895)
T KOG0188|consen 198 DDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----E 272 (895)
T ss_pred CCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----C
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997 998 4
Q ss_pred CCCCCCceEEEEeecccceeeeecCCCcCCchh---HHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALADNMFPDATA---KLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 157 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~~---vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~ 157 (797)
+.+.+|+||||+|||+||+|||||||++|+|+| |||||||||+||++..++.++ +||.+|||+|++.||++||||.
T Consensus 273 d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~-g~~~~LVpvvv~~lgd~fPEl~ 351 (895)
T KOG0188|consen 273 DADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPP-GFFSTLVPVVVETLGDAFPELK 351 (895)
T ss_pred ccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCc-chhhhhhHHHHHHHhhhchhhh
Confidence 677899999999999999999999999999994 899999999999999999886 5899999999999999999999
Q ss_pred hcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhcc
Q psy6337 158 DSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDT 237 (797)
Q Consensus 158 ~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydT 237 (797)
.+.+.|.+||++||..|.+| |++|.++|++.+.+.+++++|||+.||.||||
T Consensus 352 ~~~~~v~diineEE~~F~kt----------------------------l~rg~~~f~r~~~~~~~s~tipGd~~w~LydT 403 (895)
T KOG0188|consen 352 RDPQHVIDIINEEEAQFLKT----------------------------LDRGRKLFDRVARELGSSKTIPGDVAWRLYDT 403 (895)
T ss_pred cCHHHHHHHhcHHHHHHHHH----------------------------HHHHHHHHHHHHHhcCCCCcCchHHHHHHHhh
Confidence 99999999999999999985 55667777777777777789999999999999
Q ss_pred CCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCC-cchhhhcccCCCCCCCCCcceeeecCCCCccccccc
Q psy6337 238 YGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV-PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCL 316 (797)
Q Consensus 238 yGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~ 316 (797)
||||+|||++||+|+|+++|+++|+++.++.+++|+.+...+. ...+-+ ..-+|||||++||+ +++.+
T Consensus 404 yGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~i~ldvl-~el~p~TdDs~KY~----------~~~~~ 472 (895)
T KOG0188|consen 404 YGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLSIDLDVL-SELVPPTDDSFKYN----------EFGVC 472 (895)
T ss_pred cCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCcccHHHH-HhhCCCCCCccccc----------cCccc
Confidence 9999999999999999999999999998888888876654321 111111 12279999999874 24579
Q ss_pred ceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEE
Q psy6337 317 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGE 396 (797)
Q Consensus 317 ~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~d 396 (797)
+++|+++..++.+ |+++. .|++++||||+|+||+|+|||.+|+|.|...+... ..|.|..
T Consensus 473 ~~~il~l~~e~~~-------v~~~~-----------~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~--~~fnV~~ 532 (895)
T KOG0188|consen 473 KTRILALYREDQF-------VESIP-----------KGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDED--FVFNVKR 532 (895)
T ss_pred hhhhhhhhcCCce-------eeecC-----------CCceEEEEeecceeehhcCCcccccceEEEecCcc--ceeehhh
Confidence 9999999988776 55543 78999999999999999999999999999877432 3667777
Q ss_pred EEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCC
Q psy6337 397 LASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGE 476 (797)
Q Consensus 397 v~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~ 476 (797)
++. ||+|+|.+... +.+++|++|.+.+|.+||+.+|+|||||||||+|||+++..+.|+||+|.||++||||++- .
T Consensus 533 ~~~-gg~vvh~g~l~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k-~ 608 (895)
T KOG0188|consen 533 VQV-GGYVVHIGVLE--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTK-G 608 (895)
T ss_pred ccc-CCEEEEEeeec--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccC-C
Confidence 777 89999999874 7899999999999999999999999999999999999998899999999999999999973 5
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCcccc
Q psy6337 477 TLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHI 556 (797)
Q Consensus 477 ~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeI 556 (797)
++|.+|+.++|+.||++|.++.+|....+++++|++++|++++|+|.||++||||++|.. ..+++|+|||||+.|||+|
T Consensus 609 ~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~-~~~svE~CgGTH~~~t~~i 687 (895)
T KOG0188|consen 609 ALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAG-QLTSVEFCGGTHLTNTSHI 687 (895)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccc-cccceeecCCccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999852 4479999999999999999
Q ss_pred ccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHh-hcccH
Q psy6337 557 ESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLE-DDLPY 635 (797)
Q Consensus 557 g~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~-~~i~~ 635 (797)
|.|.|++++++++|+|||.+|||..|.++.+.++.+.+ .+.. . ...++++++.+...+. +.||+
T Consensus 688 ~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~~~~-------~~~~----~----~~~~~kei~~l~~~~~~a~iP~ 752 (895)
T KOG0188|consen 688 GDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAEDLDK-------DLRK----T----DKALEKEIQELGENLDHAVIPY 752 (895)
T ss_pred ceEEEechhhhhhceeEEEEeccHHHHHHHHHHHHHHh-------hhcc----c----chhhHHHHHHHHHhhccccchH
Confidence 99999999999999999999999999999988874222 2210 0 1356888999999885 67999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh-ccCCCCEEEEEEcCCHHHHhccCccccCCCcEEEEEe-e
Q psy6337 636 AVHKQNDHLLAELSKNVKLKLRQFAKVRITEELI----EK-CKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLY-S 709 (797)
Q Consensus 636 ~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~----~~-~~~~~~~iv~~~~~~~~~L~~~~~~~~~~~~v~l~s~-~ 709 (797)
|.|+++++.++.++|.++++.+.......++.++ .. ...+.|++|++++.+ +.++. ...+++|+++|. .
T Consensus 753 ~~k~~~~~~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~~-~~~k~----~~~~~~i~llsd~~ 827 (895)
T KOG0188|consen 753 WQKDEIRELLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKESNPNQPLLVHYIESS-KLLKK----QAPDKSIMLLSDDE 827 (895)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEecch-HHHHh----cCCCCeeEEeccCC
Confidence 9999999999999999988766554432332222 22 367789999999865 22211 112788999992 2
Q ss_pred CCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHHHHHHHHh
Q psy6337 710 LGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADE 785 (797)
Q Consensus 710 ~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~~ 785 (797)
.+||.+.|.||+.++.+|++|.+|+++++..+||||||++ .++|+.|.++ ++|++|++.|..||+.
T Consensus 828 ~gkv~~~c~V~~~a~~~gl~a~~w~q~v~~~~ggk~ggK~-----~~~q~~g~~~-----~~l~~av~~a~~~a~~ 893 (895)
T KOG0188|consen 828 SGKVTCLCQVPQNAANKGLKASEWVQSVSGTMGGKGGGKG-----VLAQATGNNV-----GCLDEAVSLATEFALL 893 (895)
T ss_pred CCeEEEEEeecHHHhhccCCHHHHHHHHHHhhCCccCCcc-----chhhhhCCcH-----HHHHHHHHHHHHHhhc
Confidence 3599999999999999999999999999999999998742 2567777665 8999999999999974
No 3
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=2.8e-149 Score=1339.52 Aligned_cols=691 Identities=28% Similarity=0.448 Sum_probs=585.1
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|+|+||||||||||||||++||+|+|||+||||||||||||||||||++||||||+|.|||+.|++++|+++|+|....+
T Consensus 210 ~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~ 289 (936)
T PLN02900 210 DDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289 (936)
T ss_pred CCCCEEEEeeeeeeeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999998999875433
Q ss_pred CCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHH-hhcccccccHHHHHHHHHHHhcccChhh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISED-VFKVKQGKLVKELSYNIAEILGDVYPEI 156 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~-~~~~~~~~~l~~Lv~~v~~~~~~~ypel 156 (797)
+....++||||||||+||++|||+||++|||+ ||||||||||+||++. ++... +||++|||.|++.|+++||||
T Consensus 290 ~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~~lg~~~--~fl~~lv~~v~~~~~~~ypel 367 (936)
T PLN02900 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEE--GFFPALVEVVVELSGDVFPEV 367 (936)
T ss_pred cccccceeeeeehhhHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhccCcHH
Confidence 32456899999999999999999999999999 4999999999999998 45555 799999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCC--CCccChhhhhhh
Q psy6337 157 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPS--ITEISGDMAFTL 234 (797)
Q Consensus 157 ~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~--~~~l~g~~af~L 234 (797)
.++++.|++||..||++|.+| |++|+++|++.+++.++ .+.|||++||+|
T Consensus 368 ~~~~~~I~~ii~~EE~~F~~t----------------------------l~~G~~~l~~~i~~~~~~~~~~l~g~~af~L 419 (936)
T PLN02900 368 KKNEKRITEIIAEEELSFGKT----------------------------LEKGIEKFKKALAAAKANGGPVLSGKDAFLL 419 (936)
T ss_pred HHhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhhcCCCcCCHHHHHHH
Confidence 999999999999999999884 66778888888865431 257999999999
Q ss_pred hccCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCC---cchh-----hhcccCCC-CCCCCCcceeeec
Q psy6337 235 YDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV---PDID-----LMDLKHFP-VTDDKYKYDYHYD 305 (797)
Q Consensus 235 ydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~---~~~~-----~~~~~~~~-~T~~~~ky~~~y~ 305 (797)
|||||||+|||++||+++|++||+++|+++|++||++||++++... ...+ .+....++ +|+ |.
T Consensus 420 ydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~------f~-- 491 (936)
T PLN02900 420 YDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSWLQKQGVAATDD------FL-- 491 (936)
T ss_pred HhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHhccCCCCCc------cc--
Confidence 9999999999999999999999999999999999999987642111 1111 11111122 332 21
Q ss_pred CCCCcccccc-cceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCC
Q psy6337 306 TNSKRYTFPC-LDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTN 384 (797)
Q Consensus 306 ~~~~~Y~~~~-~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~ 384 (797)
+|+.+. ++|+|++|+.+++. |+++. +|+.++|+||+|+|||||||||+|+|+|.+++
T Consensus 492 ----gY~~~~~~~~~v~~i~~~~~~-------v~~~~-----------~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~ 549 (936)
T PLN02900 492 ----KYDWLSDHEAVVKAILTGGGF-------VESVS-----------EGDEVGIVLDKTSFYAESGGQIGDTGVLEGSG 549 (936)
T ss_pred ----ccccCCccceEEEEEEECCce-------eeecc-----------CCCeEEEEEeCCCCCCCCCCCCCCEEEEecCC
Confidence 466666 89999999987665 55554 56778999999999999999999999998655
Q ss_pred Cccccc-eEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEeccccc
Q psy6337 385 TTQENG-KVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRV 462 (797)
Q Consensus 385 ~~~~~~-~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v 462 (797)
. .+.|.+|++.+|.++|++...+ +.+.+|++|.+.|||+||+.+|++|||||||++||+++| .+++|+|+++
T Consensus 550 -----~~~~~V~dv~k~~g~i~H~~~~~~-g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v 623 (936)
T PLN02900 550 -----GAVVEVSDVQKAGGFVLHIGTVTE-GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLV 623 (936)
T ss_pred -----CCEEEEEEEEEECCEEEEEEEecc-CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccc
Confidence 3 6899999999999999987543 568899999999999999999999999999999999999 8899999999
Q ss_pred CCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccc-c
Q psy6337 463 FSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVI-S 541 (797)
Q Consensus 463 ~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~-~ 541 (797)
+++++||||+++ +++|++++.+||+.||++|++|+||++.+++++||++..|++++++++|++.||||+|++ + |
T Consensus 624 ~~d~~r~Df~~~-~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~----~~d 698 (936)
T PLN02900 624 AFEKLRFDFSHG-KPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGG----VYS 698 (936)
T ss_pred cCCeEEEEeeCC-CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEECC----ccc
Confidence 999999999985 689999999999999999999999999999999998879999999999999999999999 8 9
Q ss_pred CCCcccCccCCccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHH
Q psy6337 542 REPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHE 621 (797)
Q Consensus 542 ~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 621 (797)
.++||||||.|||+||.|+|++++++++|++||+|+||.+|++++++.+.++++++.+.+. . ...++++
T Consensus 699 ~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~-~----------~~~~~~~ 767 (936)
T PLN02900 699 MELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKV-E----------GSDLEKK 767 (936)
T ss_pred eeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCC-C----------cccchhh
Confidence 9999999999999999999999999999999999999999999999999888776644332 0 0234667
Q ss_pred HHHHHHHHh-hcccHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEc--CCHHHH
Q psy6337 622 IKTLRELLE-DDLPYAVHKQ-------NDHLLAELSKNVKLKLRQFAKVRITEELIEK-CKEDTPYLVHYIR--DDAVEI 690 (797)
Q Consensus 622 v~~l~~~l~-~~i~~~~k~~-------l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~~~--~~~~~L 690 (797)
+.+|+..+. ..+|.+...+ +.+++++++|+++.++++++...++.++++. .+++ .+++..++ .+++.|
T Consensus 768 ~~~~~~~~~~~~~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~-~~~v~~~~~~~d~~~L 846 (936)
T PLN02900 768 VASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGK-SVLVARLDVGVDAAAL 846 (936)
T ss_pred hhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEEecCCCCHHHH
Confidence 777777774 3345444433 4555566666666666666666667666554 3444 67777776 477888
Q ss_pred hccCccccC--CC-cEEEEEe--eCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCcccccccccccccc
Q psy6337 691 QALPPLSQI--SK-PVLVLLY--SLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKIS 765 (797)
Q Consensus 691 ~~~~~~~~~--~~-~v~l~s~--~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~ 765 (797)
+.++..++. +. .+++++. .++++.++++++++++.++++|++|++++++.+||||||+ | .+|||+|+++
T Consensus 847 r~la~~l~~~~~~~~vvl~~~~~~~~k~~~~~~~~~~~~~~~~~A~~lvk~~~~~~gGkGGG~----~-~~AQggg~~~- 920 (936)
T PLN02900 847 KEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGK----P-GFAQGQGRDA- 920 (936)
T ss_pred HHHHHHHHhhcCCceEEEEEecCCCCeEEEEEEEChHHhhcCCCHHHHHHHHHHhcCCCCCCc----H-HHeeeCCCCH-
Confidence 887765543 33 5555543 4789999999998877778999999999999999999885 3 5899999886
Q ss_pred ccchHHHHHHHHHHHHHHH
Q psy6337 766 NNVEDLVKQLVDIARRSAD 784 (797)
Q Consensus 766 ~~~~~~l~~Al~~A~~fa~ 784 (797)
+.+++|++.|+++++
T Consensus 921 ----~~l~~al~~~~~~~~ 935 (936)
T PLN02900 921 ----EKLDAALEKARAFAV 935 (936)
T ss_pred ----HHHHHHHHHHHHHHh
Confidence 689999999999875
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.1e-146 Score=1314.79 Aligned_cols=655 Identities=27% Similarity=0.432 Sum_probs=557.7
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|+|+||||||||||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||++|++++|+..|.+..+..
T Consensus 184 ~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~ 263 (851)
T TIGR00344 184 ENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIM 263 (851)
T ss_pred CCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999985444443322
Q ss_pred CCC--CCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChh
Q psy6337 81 NRT--DLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 155 (797)
Q Consensus 81 ~~~--~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ype 155 (797)
+.+ ..+++|||||||+||++||||||++|||+ ||||||||||+||++.++... +||++|||+|++.|+++|||
T Consensus 264 d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~lg~~~--~fl~~lv~~~~~~m~~~ype 341 (851)
T TIGR00344 264 DEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLGLKE--AFLYKLVPTLIEVLGDYYPE 341 (851)
T ss_pred cccccccchheeeehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhChH
Confidence 222 23469999999999999999999999999 499999999999999887776 79999999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhh
Q psy6337 156 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLY 235 (797)
Q Consensus 156 l~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~Ly 235 (797)
|.++++.|.+||..||++|.+ ||++|+++|++.+++.++ +.|||++||+||
T Consensus 342 l~~~~~~i~~ii~~Ee~~f~~----------------------------tl~~G~~~l~~~~~~~~~-~~i~g~~af~Ly 392 (851)
T TIGR00344 342 LKEKQEFVEQILELEEERFAK----------------------------TLERGLRLFEKLLKKLGK-KELDGEDAFKLY 392 (851)
T ss_pred hHHhHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhcC-CccCHHHHHHHH
Confidence 999999999999999999987 467788888888876533 679999999999
Q ss_pred ccCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCCcchh--hhcccCCCCCCCCCcceeeecCCCCcccc
Q psy6337 236 DTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDID--LMDLKHFPVTDDKYKYDYHYDTNSKRYTF 313 (797)
Q Consensus 236 dTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~ 313 (797)
||||||+|||++||+|+|++||+++|+++|++||++||++++......+ .+. ...++|+.. +|+.
T Consensus 393 dTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~~~~~~~~~~-~~~~~t~~l------------~Y~~ 459 (851)
T TIGR00344 393 DTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFELQEIALA-NVYPATEFL------------GYED 459 (851)
T ss_pred HccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhcccccccHHHHh-cccCCcccc------------ceec
Confidence 9999999999999999999999999999999999999876533211111 111 112344322 2455
Q ss_pred cccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEE
Q psy6337 314 PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVE 393 (797)
Q Consensus 314 ~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~ 393 (797)
.+++|+|++++.+++. |+++. .|+.++|+||+|||||||||||+|+|+|..++ ..++
T Consensus 460 ~~~~a~V~~i~~~~~~-------v~~~~-----------~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~-----~~~~ 516 (851)
T TIGR00344 460 LEFEAKVIGLFEDGKP-------VDEAE-----------AGQSVYVILDQTPFYAESGGQIGDTGYLIAND-----GKFR 516 (851)
T ss_pred ccccEEEEEEEeCCcc-------ceecc-----------cCCceEEEEeCCCCCCCCCCCCCCEEEEecCC-----cEEE
Confidence 5789999999976655 55444 46678999999999999999999999998544 4799
Q ss_pred EEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEee
Q psy6337 394 IGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFS 472 (797)
Q Consensus 394 V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~ 472 (797)
|.+|++.+|.++|++.... +.+++|++|.+.|||+||+.+|++|||+|||++||+++| .+++|+|++++++++||||+
T Consensus 517 V~dv~~~~g~i~H~~~~~~-g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~ 595 (851)
T TIGR00344 517 VVDVQKPNGVVFHFGEVEG-GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFS 595 (851)
T ss_pred EEEEEEECCEEEEEEEecc-CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEec
Confidence 9999999999999987543 568999999999999999999999999999999999999 89999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCC
Q psy6337 473 VYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFN 552 (797)
Q Consensus 473 ~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~n 552 (797)
++ .++|++++.+||+.||++|++++||.+.+++++||++.++. .+++++|++.+|||+||+ +|.++||||||.|
T Consensus 596 ~~-~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~-~~~~e~y~~~VRVV~Ig~----~d~e~CgGTHV~n 669 (851)
T TIGR00344 596 HY-RALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAF-ALFGEKYGEKVRVVSVGD----VSVELCGGTHVRN 669 (851)
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchh-hhcCCCCCCeEEEEEECC----eeccCCCCCccCC
Confidence 74 68999999999999999999999999999999999776654 457789988999999999 9999999999999
Q ss_pred ccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhhc
Q psy6337 553 TGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDD 632 (797)
Q Consensus 553 TgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~ 632 (797)
||+||.|+|++++++++|++||+|+||.+|++++++.++++.+++ ..++.. ..++..+++
T Consensus 670 TgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~---~~L~~~--------~~~i~~~v~--------- 729 (851)
T TIGR00344 670 TGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELA---DILKVT--------PNELPKKIE--------- 729 (851)
T ss_pred hhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHH---HHhCCC--------HHHHHHHHH---------
Confidence 999999999999999999999999999999999999888776655 444411 123333443
Q ss_pred ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEcC-CHHHHhccCccccC--CCcEEEE-E
Q psy6337 633 LPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK-CKEDTPYLVHYIRD-DAVEIQALPPLSQI--SKPVLVL-L 707 (797)
Q Consensus 633 i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~~~~-~~~~L~~~~~~~~~--~~~v~l~-s 707 (797)
+|.+++++++|+++.++++++...++++.+.. .+++.++++..++. +++.|+.++..++. +..++++ +
T Consensus 730 -------~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~~~d~~~lr~la~~l~~~~~~~vvll~~ 802 (851)
T TIGR00344 730 -------RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVDAKDMKSLKTMADRLKSKLGSAIYVLAS 802 (851)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEccCCCHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 45666788888888888888877777776654 56778888888874 78888887765543 4455555 4
Q ss_pred eeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCcccccccccc
Q psy6337 708 YSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNP 761 (797)
Q Consensus 708 ~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g 761 (797)
..++++.++++++++++.++++|++|++++++.+||||||+ | .+|||+|
T Consensus 803 ~~~~k~~~v~~~~~~~~~~~~~A~~lvk~~~~~~gGkGGG~----~-~~AQggg 851 (851)
T TIGR00344 803 FANGKVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKGGGR----P-DLAQAGG 851 (851)
T ss_pred cCCCeEEEEEEEChhHhhcCCCHHHHHHHHHHHcCCCCCCc----H-HhcccCC
Confidence 55889999999998877778999999999999999999985 3 4788764
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.8e-145 Score=1303.28 Aligned_cols=662 Identities=28% Similarity=0.418 Sum_probs=568.0
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|+|+||||||||||||||+++|+|.|||+||||||||||||+|||||++||||||+|.|||++|++++|+ +|.
T Consensus 190 ~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~------ 262 (865)
T PRK00252 190 DGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE------ 262 (865)
T ss_pred CCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC------
Confidence 5789999999999999999999999999999999999999999999999999999999999999999998 574
Q ss_pred CCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 157 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~ 157 (797)
.++||||||||+||++|||+||++|||+ ||||||||||+||++.++... +||++|||.|++.|+++||||.
T Consensus 263 ----~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~--~~l~~lv~~~~~~~~~~ypel~ 336 (865)
T PRK00252 263 ----DDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKE--PFLYKLVPVVIDEMGDAYPELK 336 (865)
T ss_pred ----CCceEEEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhChhhH
Confidence 2689999999999999999999999999 499999999999998877766 7999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhcc
Q psy6337 158 DSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDT 237 (797)
Q Consensus 158 ~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydT 237 (797)
++++.|++||+.||++|.+| |.+|+++|++.+++.++.+.|||++||+||||
T Consensus 337 ~~~~~i~~ii~~Ee~~f~~t----------------------------l~~G~~~~~~~~~~~~~~~~l~g~~~f~Lydt 388 (865)
T PRK00252 337 EKQDLIEKVLKAEEERFLKT----------------------------LERGLKLLEEALAKLKAGKVLSGEDAFKLYDT 388 (865)
T ss_pred HhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHhccCCCccCHHHHHHHHhc
Confidence 99999999999999999874 66788888888876532257999999999999
Q ss_pred CCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCC--cchhhhcccCCCCCCCCCcceeeecCCCCcccccc
Q psy6337 238 YGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV--PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPC 315 (797)
Q Consensus 238 yGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~--~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~ 315 (797)
||||+|||++||+++|++||+++|+++|++||++|++.+.... .....+.. .. +| .|. +|+..+
T Consensus 389 yGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~-~t------~f~------~Y~~~~ 454 (865)
T PRK00252 389 YGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDYNALEELLD-DL-AT------EFV------GYDTLE 454 (865)
T ss_pred cCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccchhHHHHHhh-cC-CC------eee------eeeecc
Confidence 9999999999999999999999999999999999886653221 01111111 11 22 222 466668
Q ss_pred cceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEE
Q psy6337 316 LDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIG 395 (797)
Q Consensus 316 ~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~ 395 (797)
++|+|++|+.+++. |+++. +|+.++|+||+|+|||||||||+|+|+|.. + ..++|.
T Consensus 455 ~~a~v~~i~~~~~~-------~~~~~-----------~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~-----~~~~V~ 510 (865)
T PRK00252 455 AEAKVLALFVDGES-------VDSAK-----------AGEEVEVVLDKTPFYAESGGQVGDTGVIED-G-----GVFEVT 510 (865)
T ss_pred ccEEEEEEEeCCce-------eeecc-----------CCCeEEEEEeCCCCCCCCCCCCCCEEEEee-C-----cEEEEE
Confidence 99999999987665 55544 577789999999999999999999999986 4 479999
Q ss_pred EEEEe-CCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeec
Q psy6337 396 ELASL-EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSV 473 (797)
Q Consensus 396 dv~~~-~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~ 473 (797)
+|++. +|+++|++...+ +.+++|++|.+.|||+||+.+|++|||+|||++||+++| .+++|+|++++++++||||++
T Consensus 511 ~v~~~~~g~i~H~~~~~~-~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~ 589 (865)
T PRK00252 511 DTQKPPNGLIVHRGKVEE-GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSH 589 (865)
T ss_pred EEEEccCCEEEEEEEecc-CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeec
Confidence 99998 999999997543 568999999999999999999999999999999999999 789999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCc
Q psy6337 474 YGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 553 (797)
Q Consensus 474 ~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nT 553 (797)
+ +++|++++.+||+.||++|++++||++.+++++||++ .+++.+++++|++.+|||+||+ +|.++||||||.||
T Consensus 590 ~-~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~-~~~~~~~~~~y~~~VRVV~Ig~----~d~~~CgGTHV~nT 663 (865)
T PRK00252 590 F-EALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKK-MGAMALFGEKYGDEVRVVSIGD----FSIELCGGTHVSNT 663 (865)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh-CCchhhccccCCCeEEEEEECC----ceeeCCCCCccCCc
Confidence 5 6899999999999999999999999999999999976 4566777889999999999999 99999999999999
Q ss_pred cccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhhcc
Q psy6337 554 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDL 633 (797)
Q Consensus 554 geIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~i 633 (797)
|+||.|+|++++++++|++||+|+||.+|+++++..++++++++ ..++. + ..++.+.++
T Consensus 664 geIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~---~~l~~-----~---~~~l~~~v~---------- 722 (865)
T PRK00252 664 GDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELA---ALLKA-----K---PSELPERVE---------- 722 (865)
T ss_pred ccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHH---HHhCC-----C---HHHHHHHHH----------
Confidence 99999999999999999999999999999999999888877655 44431 1 133444444
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEc-CCHHHHhccCccccC--CCcEEEE-Ee
Q psy6337 634 PYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK-CKEDTPYLVHYIR-DDAVEIQALPPLSQI--SKPVLVL-LY 708 (797)
Q Consensus 634 ~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~~~-~~~~~L~~~~~~~~~--~~~v~l~-s~ 708 (797)
++.+++++++|+++.++++++...+++++++. .+++.++++..++ .+++.|+.++..++. +..++++ +.
T Consensus 723 ------~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~~~d~~~L~~la~~l~~~~~~~vvll~~~ 796 (865)
T PRK00252 723 ------ALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVEGVDAKALRTLADDLKDKLGSGVVVLATV 796 (865)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEecCCCHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 45556678888888888888777777776654 4667778887776 478888887765543 3344444 44
Q ss_pred eCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHHHHHHHHh
Q psy6337 709 SLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADE 785 (797)
Q Consensus 709 ~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~~ 785 (797)
.++++.+++++++++..++++|++|++++++.+||||||+ | .+|||+|+++ +.+++|++.|++++..
T Consensus 797 ~~~k~~~vv~v~~~~~~~gl~A~~l~k~l~~~lgGkGGGk----~-~~AQGgg~~~-----~~l~~al~~a~~~l~~ 863 (865)
T PRK00252 797 EDGKVSLVVAVTKDLTDKGLKAGDLVKELAKIVGGKGGGR----P-DMAQAGGKDP-----AKLDEALAAVKEWLAA 863 (865)
T ss_pred cCCeEEEEEEEChhHhhcCcCHHHHHHHHHHhcCCCCCCc----H-HHeeeCCCCH-----HHHHHHHHHHHHHHHh
Confidence 4778999999988877778999999999999999999885 3 4799999876 6899999999999854
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=2.2e-141 Score=1271.57 Aligned_cols=648 Identities=21% Similarity=0.307 Sum_probs=555.3
Q ss_pred EEEeeeeeeeeccCC-------CCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCC-------
Q psy6337 6 IEIWNIVFISHKRVS-------ADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK------- 71 (797)
Q Consensus 6 lEiWNlVFmQy~r~~-------~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~------- 71 (797)
|||||||||||||++ ||+|+|||+||||||||||||+|||||+|||||| +|.|||+.|++++|++
T Consensus 204 lEiwnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~ 282 (902)
T TIGR03683 204 LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEIL 282 (902)
T ss_pred EeeeeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhh
Confidence 899999999999998 9999999999999999999999999999999999 9999999999999985
Q ss_pred ----CCCCcccCCCCCCC-------------------C-----ceEEEEeecccceeeeecCCCcCCch---hHHHHHHH
Q psy6337 72 ----PYGRTFTTSNRTDL-------------------D-----TSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVR 120 (797)
Q Consensus 72 ----~y~g~~~~~~~~~~-------------------d-----~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilR 120 (797)
+|+|.++.++...+ + .++||||||+||++|||+||++|||+ ||||||||
T Consensus 283 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilR 362 (902)
T TIGR03683 283 AENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIR 362 (902)
T ss_pred hhhhhhccccCccccchhhHHhhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHH
Confidence 46777765443211 2 58899999999999999999999999 49999999
Q ss_pred HHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhcc
Q psy6337 121 DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 200 (797)
Q Consensus 121 Ra~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~ 200 (797)
||+||++.++.+. + |++|||.|++.|+++||||.++++.|.+||+.||++|.+
T Consensus 363 Ra~r~~~~lg~~~--~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~------------------------ 415 (902)
T TIGR03683 363 RTLRLMRELGLDI--P-LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRE------------------------ 415 (902)
T ss_pred HHHHHHHHhCCCc--c-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHH------------------------
Confidence 9999998887766 6 999999999999999999999999999999999999988
Q ss_pred ccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhccCCCChHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHHhhhcCC
Q psy6337 201 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSKAKAASN 279 (797)
Q Consensus 201 ~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~ 279 (797)
||++|+++|++.+++ + +.|||++||+||||||||+|||++||+++|++||++ +|+++|++||+++++....
T Consensus 416 ----Tl~~G~~~~~~~~~~-~--~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~- 487 (902)
T TIGR03683 416 ----TLERGRRIVERLLKT-K--KEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL- 487 (902)
T ss_pred ----HHHHHHHHHHHHHhc-C--CcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-
Confidence 466788888888865 2 579999999999999999999999999999999998 9999999999998765321
Q ss_pred CcchhhhcccCCCCCCCCCcceeeecCCCCcccccccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEE
Q psy6337 280 VPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGL 359 (797)
Q Consensus 280 ~~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 359 (797)
...... ...++|+|+..| |+.. |. .+++|+|++++. .+|
T Consensus 488 ~~~~~~-~~~~~~~T~~l~-----y~~~---~~-~e~~a~Vl~i~~-------------------------------~~v 526 (902)
T TIGR03683 488 PKDYEE-RAKDLPETRRLF-----YEDP---TM-REFEAKVLGVFD-------------------------------NYV 526 (902)
T ss_pred ccchhH-HHhcCCCceEec-----cccC---cc-ceEEEEEEEEEc-------------------------------CEE
Confidence 111111 123567775443 3332 21 358899998871 269
Q ss_pred EeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhh
Q psy6337 360 IFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHT 439 (797)
Q Consensus 360 vLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HT 439 (797)
+||+|+|||||||||+|+|+|..++ ..++|.+|++.+|.|+|++.. +.+++|++|.+.|||+||+.+|++||
T Consensus 527 vLd~T~FYpEgGGQ~~D~G~I~~~~-----~~~~V~dv~k~~g~i~H~~~~---~~l~~G~~V~~~VD~~rR~~~m~~HT 598 (902)
T TIGR03683 527 VLDQTAFYPEGGGQPADTGYLITNG-----GKIRVVDVQKVGGVIVHKVDG---EGIKEGDEVKGEIDWERRLRLMRHHT 598 (902)
T ss_pred EEeCCCCCCCCCCCCCCEEEEEeCC-----cEEEEEEEEEECCEEEEEeCC---CCCCCCCEEEEEECHHHHHHHHHHHH
Confidence 9999999999999999999998765 479999999999999999963 34789999999999999999999999
Q ss_pred HHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccc
Q psy6337 440 TSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTV 518 (797)
Q Consensus 440 AtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~ 518 (797)
|||||++||+++| .|++|+|++++++++||||+|+ +++|++++.+||+.||++|++|+||++.+++++||++.++++.
T Consensus 599 AtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~-~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l 677 (902)
T TIGR03683 599 ATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHY-KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRL 677 (902)
T ss_pred HHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhh
Confidence 9999999999999 8999999999999999999985 6899999999999999999999999999999999988888776
Q ss_pred cCC-CcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHH
Q psy6337 519 IPG-EIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVK 597 (797)
Q Consensus 519 ~~g-e~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~ 597 (797)
+++ ++|++.+|||+||+ +|+++||||||.|||+||.|+|++++++++|++||+|+||.+|+++++..++++++++
T Consensus 678 ~~~~~~~~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a 753 (902)
T TIGR03683 678 YQGGVPPGREIRVVEIED----WDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESS 753 (902)
T ss_pred hccCCCCCCeEEEEEECC----eeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHH
Confidence 654 56778899999999 9999999999999999999999999999999999999999999999999988887665
Q ss_pred HHHHHhccccccchHHHHHhHHHHHHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCC
Q psy6337 598 QLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK-CKEDT 676 (797)
Q Consensus 598 ~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~-~~~~~ 676 (797)
..++.. .+++.++++ ++.+++++++|++..++++++...+++++... .+++.
T Consensus 754 ---~~L~~~--------~~~l~~~v~----------------~l~~e~k~l~k~l~~l~~~l~~~~~~~l~~~~~~i~g~ 806 (902)
T TIGR03683 754 ---DILKVP--------PEQLPETVK----------------RFFEEWKEQRKEIERLKKKLAELKIYELISEAERIGGV 806 (902)
T ss_pred ---HHhCCC--------hHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCE
Confidence 444311 123344444 45566788889988888888887777776554 56778
Q ss_pred CEEEEEEcCCHHHHhccCccccC-CCcEEEEEeeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCcccc
Q psy6337 677 PYLVHYIRDDAVEIQALPPLSQI-SKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQH 755 (797)
Q Consensus 677 ~~iv~~~~~~~~~L~~~~~~~~~-~~~v~l~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~ 755 (797)
++++..++.+++.|+.++..++. +.++++++..++++.+++++++++ +++|++|++++++.+||||||+ | .
T Consensus 807 ~vi~~~~~~d~~~lr~la~~l~~~~~vvvl~~~~~~k~~~v~~~~~~~---~~~A~~lvk~l~~~lgGkGGGk----~-~ 878 (902)
T TIGR03683 807 EVIVELVDADMDELQEIAEKLAEKGLVVVLVSGGGGNGRVVISSGEKA---GVDAGELVREIAKELGGGGGGK----P-D 878 (902)
T ss_pred EEEEEEeCCCHHHHHHHHHHHhcCCcEEEEEEccCCcEEEEEEEChhH---hhhHHHHHHHHHHhcCCCcCCc----h-h
Confidence 88888777788888887765544 444455565568888888888765 7999999999999999999886 3 4
Q ss_pred ccccccccccccchHHHHHHHHHHHHHH
Q psy6337 756 LYSMNPVKISNNVEDLVKQLVDIARRSA 783 (797)
Q Consensus 756 ~aqg~g~~~~~~~~~~l~~Al~~A~~fa 783 (797)
+|||+|+++ +.+++|++.|++++
T Consensus 879 ~AQGgg~~~-----~~l~~al~~~~~~l 901 (902)
T TIGR03683 879 LAQGGGPDD-----LKIDEALEKIKSFL 901 (902)
T ss_pred heeecCCCH-----HHHHHHHHHHHHHh
Confidence 799999886 68999999999875
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-139 Score=1254.98 Aligned_cols=648 Identities=21% Similarity=0.310 Sum_probs=553.5
Q ss_pred EEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCC-----------CCC
Q psy6337 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK-----------PYG 74 (797)
Q Consensus 6 lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~-----------~y~ 74 (797)
|||||||||||||+ +|+|+|||+||||||||||||+|||||+|||||| +|.|||+.|++++|++ +|+
T Consensus 208 lEiwnlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~ 285 (900)
T PRK13902 208 LELATLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLA 285 (900)
T ss_pred EEeeeeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhc
Confidence 89999999999998 9999999999999999999999999999999999 9999999999999974 366
Q ss_pred CcccCCCCC------------------------CCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhH
Q psy6337 75 RTFTTSNRT------------------------DLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISE 127 (797)
Q Consensus 75 g~~~~~~~~------------------------~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~ 127 (797)
|.++.++.. ....++||||||+||++|||+||++|||+ ||||||||||+||++
T Consensus 286 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~ 365 (900)
T PRK13902 286 GLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLD 365 (900)
T ss_pred ccCCcccchhHHHHHHHHHhhcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHH
Confidence 776633211 01269999999999999999999999999 499999999999999
Q ss_pred HhhcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHh
Q psy6337 128 DVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLV 207 (797)
Q Consensus 128 ~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~ 207 (797)
.++.+. + |++||+.|++.|+++||||.++++.|++||..||++|.+| |+
T Consensus 366 ~lg~~~--~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~t----------------------------l~ 414 (900)
T PRK13902 366 ELGLDV--P-LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRET----------------------------LE 414 (900)
T ss_pred HhCCCc--c-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHH----------------------------HH
Confidence 887766 6 9999999999999999999999999999999999999885 66
Q ss_pred hHHHHHHHHHhcCCCCCccChhhhhhhhccCCCChHHHHHHHHHcCCccCH-HHHHHHHHHHHHHHHhhhcCCCcchhhh
Q psy6337 208 LGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCH-EAFEQKLNELKERSKAKAASNVPDIDLM 286 (797)
Q Consensus 208 ~g~~~l~~~~~~~~~~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~-~~f~~~~~~~~~~s~~~~~~~~~~~~~~ 286 (797)
+|.++|++.+++. +.|||++||+||||||||+|||++||+++|++||+ ++|+++|++||+++++..... ... ..
T Consensus 415 ~G~~~~~~~~~~~---~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~~-~~~-~~ 489 (900)
T PRK13902 415 RGKRIVERLAKKK---EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEEP-VVE-EE 489 (900)
T ss_pred HHHHHHHHHHHhc---CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhccccc-cch-hh
Confidence 7778888888764 46999999999999999999999999999999999 799999999999987642111 111 11
Q ss_pred cccCCCCCCCCCcceeeecCCCCcccccccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeeccee
Q psy6337 287 DLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNL 366 (797)
Q Consensus 287 ~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~F 366 (797)
...++|+|+..| |+.. |. .+++|+|++++. .+|+||+|+|
T Consensus 490 ~~~~~~~T~~l~-----y~~~---~~-~~~~a~Vl~i~~-------------------------------~~vvLD~T~F 529 (900)
T PRK13902 490 RLKDLPETEKLF-----YEDP---YM-REFEAKVLGVID-------------------------------NYVVLDQTAF 529 (900)
T ss_pred HhhcCCCceEec-----cccC---cc-ceEEEEEEEEEc-------------------------------CEEEEeCCCC
Confidence 234667775443 3332 21 358999998872 2699999999
Q ss_pred eeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHH
Q psy6337 367 YATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNA 446 (797)
Q Consensus 367 YpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~ 446 (797)
||||||||+|+|+|..++ ..++|.+|++.+|.++|.+.. +.+.+|++|.++|||+||+++|+||||||||++
T Consensus 530 YpEgGGQ~~D~G~I~~~~-----~~~~V~dv~k~~g~i~H~~~~---~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~ 601 (900)
T PRK13902 530 YPEGGGQPADTGVLIVDG-----KGYKVVDVQKVGGVIVHVLEG---EPPKKGDEVRGEIDWERRYRLMRHHTATHIILA 601 (900)
T ss_pred CCCCCCCCCCEEEEEeCC-----cEEEEEEEEEECCEEEEEeCC---CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765 479999999999999999953 334569999999999999999999999999999
Q ss_pred HHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccC-CCcC
Q psy6337 447 ALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIP-GEIY 524 (797)
Q Consensus 447 Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~-ge~y 524 (797)
||+++| .|+||+|++++++++||||+|+ +++|++++.+||+.||++|++|+||++.+++++||++.++++.++ +++|
T Consensus 602 al~~vlG~~v~q~Gs~v~~d~~r~Df~~~-~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~ 680 (900)
T PRK13902 602 AARKVLGDHVWQAGAQKTVDKARLDITHY-KRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPP 680 (900)
T ss_pred HHHHHhCCceeecCccccCCCEEEEEeCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCC
Confidence 999999 8999999999999999999986 689999999999999999999999999999999999888887765 4678
Q ss_pred CCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6337 525 PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATIN 604 (797)
Q Consensus 525 ~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~ 604 (797)
++.+|||+|++ +|+++||||||.|||+||.|+|++++++++|++||+|+||.+|+++++..++++.+++ ..++
T Consensus 681 ~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a---~~L~ 753 (900)
T PRK13902 681 GKTIRVVEIGD----WDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELEDLLKEAA---EILG 753 (900)
T ss_pred CCeEEEEEECC----eeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHH---HHhC
Confidence 88999999999 9999999999999999999999999999999999999999999999999988887665 4443
Q ss_pred cccccchHHHHHhHHHHHHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEE
Q psy6337 605 QNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK-CKEDTPYLVHYI 683 (797)
Q Consensus 605 ~~~~~~~~~~~~~~~~~v~~l~~~l~~~i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~~ 683 (797)
.. .+++.++++ ++.+++++++|+++.++++++...++++..+. .+++.++++..+
T Consensus 754 ~~--------~~el~~~v~----------------kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~~g~~~i~~~~ 809 (900)
T PRK13902 754 VP--------PEQLPKTVE----------------RFFEEWKEQKKEIEKLRKELAELLASELLSKAEEVGGVKVVVEEV 809 (900)
T ss_pred CC--------hHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEeCCEEEEEEEe
Confidence 11 123444444 46666788899998888888888888776654 577888888877
Q ss_pred cCCHHHHhccCccccC-CCcEEEEEeeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccc
Q psy6337 684 RDDAVEIQALPPLSQI-SKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPV 762 (797)
Q Consensus 684 ~~~~~~L~~~~~~~~~-~~~v~l~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~ 762 (797)
+.+++.|+.++..++. ...+++++ .++++.+++++++++ .++|++|++++++.+||||||+ | .+|||+|+
T Consensus 810 ~~d~~~Lr~~a~~l~~~~~~vvl~~-~~~k~~~v~~~~~~~---~~~a~~lvk~l~~~~gGkGGGk----~-~~AQGgg~ 880 (900)
T PRK13902 810 DADEDELRKIANELAKEGKVALVVL-GNGGGQIVVGVGEDV---GVNAGEIVRELAKVLGGKGGGK----P-DLAQGGGP 880 (900)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEE-cCCcEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCCCc----h-HheeeCCC
Confidence 7688888887665543 33344555 677888888888765 3899999999999999999986 3 47999998
Q ss_pred cccccchHHHHHHHHHHHHHHHh
Q psy6337 763 KISNNVEDLVKQLVDIARRSADE 785 (797)
Q Consensus 763 ~~~~~~~~~l~~Al~~A~~fa~~ 785 (797)
++ +++++|++.|++++..
T Consensus 881 ~~-----~~l~~al~~~~~~l~~ 898 (900)
T PRK13902 881 DP-----KKKEEALEAAKEVLKE 898 (900)
T ss_pred CH-----HHHHHHHHHHHHHHHh
Confidence 86 7899999999998754
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-106 Score=924.20 Aligned_cols=392 Identities=31% Similarity=0.483 Sum_probs=354.5
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|.++||||||||||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||+.|++++|+ +|..
T Consensus 195 ~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~----- 268 (594)
T PRK01584 195 SCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ----- 268 (594)
T ss_pred CCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC-----
Confidence 3468999999999999999999999999999999999999999999999999999999999999999997 5742
Q ss_pred CCCCCCceEEEEeecccceeeeecC--CCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALAD--NMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 155 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaD--G~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ype 155 (797)
....++||||||||+||++|||+| |++|||+ ||||||||||+|||++++.+. +||++||+.|++.|+++|||
T Consensus 269 -~~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r~~~~lg~~~--~fl~~lv~~v~~~~~~~ype 345 (594)
T PRK01584 269 -NEEDDRSIRIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKLGIES--HFLADLVDSVEEIYGSFYPE 345 (594)
T ss_pred -CCCCceeEEEEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhhhChH
Confidence 123478999999999999999999 9999999 499999999999999877766 79999999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhh
Q psy6337 156 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLY 235 (797)
Q Consensus 156 l~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~Ly 235 (797)
|.++++.|++||+.||++|.+ ||++|+++|++.++++++++.|||++||+||
T Consensus 346 l~~~~~~I~~ii~~EE~~F~~----------------------------tl~~G~~~l~~~i~~~~~~~~~~g~~af~Ly 397 (594)
T PRK01584 346 LTEKKDFIKEELNKEEEKFFK----------------------------TLRKGEQEFIKLIPNLGSSKIIPGDIAFKLY 397 (594)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhccCCccCHHHHHhhh
Confidence 999999999999999999988 4677888888888765433689999999999
Q ss_pred ccCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCCcchhhhcccCCCCCCCCCcceeeecCCCCcccccc
Q psy6337 236 DTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPC 315 (797)
Q Consensus 236 dTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~ 315 (797)
||||||+|||++||+++|++||+++|+++|++|+++||++. .
T Consensus 398 dTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~~--------------------------------------~ 439 (594)
T PRK01584 398 DTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGA--------------------------------------D 439 (594)
T ss_pred ccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhcc--------------------------------------c
Confidence 99999999999999999999999999999999987775310 0
Q ss_pred cceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEE
Q psy6337 316 LDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIG 395 (797)
Q Consensus 316 ~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~ 395 (797)
.++ . ||++|+|.
T Consensus 440 -----------~~f-----------------------~------------------g~~~d~g~---------------- 451 (594)
T PRK01584 440 -----------KVF-----------------------K------------------GGLADHSY---------------- 451 (594)
T ss_pred -----------ccc-----------------------c------------------CCcCcccc----------------
Confidence 011 0 35666652
Q ss_pred EEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecC
Q psy6337 396 ELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVY 474 (797)
Q Consensus 396 dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~ 474 (797)
.+|++|||+|||++||+++| .++.|+|+++.++++||||+++
T Consensus 452 -------------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~ 494 (594)
T PRK01584 452 -------------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHP 494 (594)
T ss_pred -------------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCC
Confidence 37999999999999999999 7889999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCcc
Q psy6337 475 GETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTG 554 (797)
Q Consensus 475 ~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTg 554 (797)
+++|++++.+||+.||++|++++||.+.+++++||++.. ...+++++|++.+|||+||+ +|.++||||||.|||
T Consensus 495 -~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~~-~~~lf~e~y~~~VRVV~Igd----~d~elCGGTHV~nTg 568 (594)
T PRK01584 495 -EKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAREKG-AMALFGEKYEDIVKVYEIDG----FSKEVCGGPHVENTG 568 (594)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhcc-hhhhccccCCCcEEEEEECC----eeeeCCCCCCCCCcc
Confidence 689999999999999999999999999999999997764 45667788999999999999 999999999999999
Q ss_pred ccccEEEeeeecccCCeEEEEEEe
Q psy6337 555 HIESCTVIGYKSYNHGVRSIKCLT 578 (797)
Q Consensus 555 eIg~fkIl~~~~~~~gv~RI~~vt 578 (797)
+||.|+|++++++++|+|||++++
T Consensus 569 eIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 569 ELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred cCceEEEEecccccCCeEEEEEEe
Confidence 999999999999999999999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=1.8e-90 Score=799.65 Aligned_cols=358 Identities=32% Similarity=0.561 Sum_probs=277.8
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|+++|+||||+|||||||++||+++|||++||||||||||++++|||++||||||+|.|+++.|++++++ +|.
T Consensus 191 ~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------ 263 (552)
T PF01411_consen 191 DDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------ 263 (552)
T ss_dssp HHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------
T ss_pred ccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------
Confidence 4679999999999999999999999999999999999999999999999999999999999999999998 773
Q ss_pred CCCCCCceEEEEeecccceeeeecCCCcCCchh---HHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALADNMFPDATA---KLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 157 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~~---vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~ 157 (797)
+....+++|||||||+||++|||+||++|||+| |||||||||+|+++.++... +||++||+.|++.|+++||||.
T Consensus 264 ~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~~~lg~~~--~fl~~lv~~vi~~~~~~ypel~ 341 (552)
T PF01411_consen 264 DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFGRKLGIEE--PFLYELVPVVIESMGDFYPELK 341 (552)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SS----HHHHHHHHHHHHTTTGTHHH
T ss_pred cccccccEEEEEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHHHHhCCCc--cchHHHHHHHHHHhhccChhhh
Confidence 234568999999999999999999999999994 99999999999998888777 7999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhcc
Q psy6337 158 DSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDT 237 (797)
Q Consensus 158 ~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydT 237 (797)
++++.|.+||+.||++|.+ ||++|+++|++.++++++++.|||++||+||||
T Consensus 342 ~~~~~I~~ii~~EE~~F~~----------------------------TL~~G~~~l~~~i~~~~~~~~lsge~aF~LYDT 393 (552)
T PF01411_consen 342 ENKDYIKDIIKEEEERFLK----------------------------TLERGLKLLEKLIKKLKKKKELSGEDAFKLYDT 393 (552)
T ss_dssp HCHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHCCSEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHhhhccccCCChHHheeehhc
Confidence 9999999999999999987 467788888888887544579999999999999
Q ss_pred CCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCCC-cchhhhcccCCCCCCCCCcceeeecCCCCccccccc
Q psy6337 238 YGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV-PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCL 316 (797)
Q Consensus 238 yGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~ 316 (797)
||||+|||++||+++|++||+++|+++|++||++||++++... ...+......++.|+ .| .+|+..++
T Consensus 394 yGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~~~~~~~~~~~l~~~t-----eF------~gYe~~~~ 462 (552)
T PF01411_consen 394 YGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSSIEEDVSALAELPKTT-----EF------VGYEYLEC 462 (552)
T ss_dssp H---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH--------SSSTTTTCHHHE-----ET------CCCC----
T ss_pred cCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccchhhhHHHHhhhhccc-----cc------ceeecccc
Confidence 9999999999999999999999999999999999987664321 111111122333332 22 25776788
Q ss_pred ceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEE
Q psy6337 317 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGE 396 (797)
Q Consensus 317 ~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~d 396 (797)
+|+|++|+.+++. +..+. +++..+||||+|||||||||||||+|+|..++ ..+.|.+
T Consensus 463 ~akVlal~~~~~~-------~~~v~-----------~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~-----~~~~V~d 519 (552)
T PF01411_consen 463 EAKVLALFKDGEF-------VAKVE-----------EGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDG-----GEFEVTD 519 (552)
T ss_dssp --TT---TT--EE-------EEEEE-----------EEETTEEEESEE-S--SBTTB----EEECCTT-----EEEEEEE
T ss_pred cceEEEEEeCCEE-------Eeeec-----------CCceEEEEECCccccCCCCCCCCCeEEEeecc-----eEEEEEE
Confidence 9999999876654 33332 34557899999999999999999999998776 5899999
Q ss_pred EEEeCCEEEEEEEeecCcccCCCCeEEEEechhh
Q psy6337 397 LASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 430 (797)
Q Consensus 397 v~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~r 430 (797)
|++.+|+++|.+.... +.+++|+.|.++|||+|
T Consensus 520 v~k~~g~i~H~~~~~~-g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 520 VQKVGGVILHIGEVES-GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp EEEETTEEEEEESSG--GG--TTSEEEEEE-HHH
T ss_pred EEEECCEEEEEEeccC-CCCCCCCEEEEEecCCC
Confidence 9999999999998753 67999999999999997
No 10
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=9.3e-47 Score=391.69 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=176.0
Q ss_pred EEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeec-----CcccCCCCeEEEEechhhh
Q psy6337 357 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVS-----SFKVTPGLTSRVEVDARMR 431 (797)
Q Consensus 357 ~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~-----~~~l~~G~~V~~~VD~~rR 431 (797)
++|+||+|+|||||||||+|+|+|...++. ..|+|.+|++.+|+++|++.... .+.|.+|++|.++|||+||
T Consensus 3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~~---~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR 79 (223)
T PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIVISGGD---TKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRR 79 (223)
T ss_pred eEEEeCCceEcCCCCCCCCcEEEEEecCCC---cEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHH
Confidence 689999999999999999999999874421 36899999999999999986431 2468899999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHh-h-cceEecccccCCCceEEEeecCCCCCCHHHH----HHHHHHHHHHHHccCCeEEEEc
Q psy6337 432 LGCMRAHTTSHLLNAALRRV-L-TCTYQKSCRVFSDECALDFSVYGETLSVDSV----AAVEKYINDVIADQVQVDRRHM 505 (797)
Q Consensus 432 ~~~~~~HTAtHLL~~Al~~v-l-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel----~~IE~~vNe~I~~~~pV~~~~~ 505 (797)
+.+|++|||+|||++||+++ + .++.++|++ .+++.++||. ..++.+++ .+||+.||++|++++||++.++
T Consensus 80 ~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~-~~~~~~v~~~---~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~ 155 (223)
T PLN02961 80 KLHSRLHSAGHLLDVCMARVGLGPLEPGKGYH-FPDGPFVEYK---GKIPQGELDSKQDELEAEANELIAEGGKVSAAVL 155 (223)
T ss_pred hhhhccCcHHHHHHHHHHHcCCCccccccccc-cCCccceeec---ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEe
Confidence 99999999999999999997 5 456667776 4678899985 45777654 7999999999999999999999
Q ss_pred CcccccccccccccCCCcC-CCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEE
Q psy6337 506 RASELPSLTHLTVIPGEIY-PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 577 (797)
Q Consensus 506 ~~~eA~~~~g~~~~~ge~y-~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~v 577 (797)
+++||+++.+. ..+.... .+.+|||+|++ ++.+|||||||.||+|||.|+|++.+ +++|.+||+|.
T Consensus 156 ~~~ea~~~~~~-~~~~~~~~~~~vRiV~I~~----~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~ 222 (223)
T PLN02961 156 PYDEAAELCGG-SLPDYIAKDSTPRIVKIGD----SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT 222 (223)
T ss_pred CHHHHHHhcCC-cCCCcCCCCCceEEEEECC----CccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence 99999776442 2332111 35799999999 99999999999999999999999986 56889999974
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=1.6e-46 Score=388.10 Aligned_cols=211 Identities=27% Similarity=0.423 Sum_probs=192.5
Q ss_pred EEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHH
Q psy6337 358 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRA 437 (797)
Q Consensus 358 ~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~ 437 (797)
.|+||+|+|||+|||||+|+|+|.+.+ ....|.++.+.+..|+|++... ..+++|++|.+.|||+||+.+||+
T Consensus 26 ~i~ld~T~Fyp~~GGQp~D~G~l~~~~-----~~~~~~~~~~~~~~I~H~~~~~--~~~~vG~~V~~~IDW~rRy~~mr~ 98 (241)
T COG2872 26 EIVLDRTIFYPTGGGQPGDTGTLIWAG-----GEYVVEDVTKDGEEIVHVLAEH--AKLKVGDKVKLKIDWERRYRHMRM 98 (241)
T ss_pred eEEEEeccccCCCCCCcCCceEEEeCC-----ceEEEEEEEecceEEEEEecCc--ccCCCCCEEEEEECcHHHHHHHhh
Confidence 699999999999999999999999988 5788999999999999999864 457899999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccccccccccc
Q psy6337 438 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLT 517 (797)
Q Consensus 438 HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~ 517 (797)
|||+|||++++.+.+. .+-.|++++++++|+||+.. . +++.+.+++.++|++|.+|+||...+++.+||.+.+++.
T Consensus 99 HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e--~-~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~ 174 (241)
T COG2872 99 HTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGE--D-TEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLV 174 (241)
T ss_pred hHHHHHHHHHhhcccc-ceeecceecccccccccccc--c-chhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChh
Confidence 9999999999999885 33469999999999999852 3 899999999999999999999999999999999999988
Q ss_pred ccCCCcCCC---cEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecHHHH
Q psy6337 518 VIPGEIYPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK 583 (797)
Q Consensus 518 ~~~ge~y~~---~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~ 583 (797)
.+....+|. .+|+|+|++ +|.+|||||||+||+|||.|+|++.++++++.+||+|.+|.+|.
T Consensus 175 ~~~~~~~~~~~g~iRiV~I~d----id~qpCgGtHVk~T~EIG~Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 175 KLKNKVPPDVEGKIRIVEIGD----IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred hhcccCCccccceEEEEEECC----eeccCCCCcccCCccceEEEEEEEEEEecCceEEEEEEeccccc
Confidence 776644442 578999999 99999999999999999999999999999999999999998875
No 12
>KOG2105|consensus
Probab=100.00 E-value=1.1e-38 Score=326.37 Aligned_cols=347 Identities=21% Similarity=0.276 Sum_probs=248.0
Q ss_pred eEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHH
Q psy6337 356 WVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 435 (797)
Q Consensus 356 ~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~ 435 (797)
.+.+.|.+|++||||||||+|.|++. .+.|..|.+.|...-|+.. ..+.+|.+|.+.|||+||+++|
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~---------~v~V~~VsR~G~~A~H~~~----~~iePGt~V~V~VD~qkR~D~M 109 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLK---------IVEVSHVSRFGLHAKHHVN----DYIEPGTTVEVAVDEQKRMDYM 109 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccc---------ceeEEEeeccccchhhccC----CCCCCCCeEEEEecHHHHhHHH
Confidence 36799999999999999999999995 4568899888888888776 4588999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccc--cc
Q psy6337 436 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEL--PS 512 (797)
Q Consensus 436 ~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA--~~ 512 (797)
++||++|||.+++.++| -.+..| .++.-...+..+. .++|.||+..||+.+|+.|..-+||.+.+.++++- .+
T Consensus 110 QQHsGQHLitAvad~~fKlkTtSW--elG~~~sa~e~~~--~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeq 185 (415)
T KOG2105|consen 110 QQHSGQHLITAVADHLFKLKTTSW--ELGRFRSAIELDT--PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQ 185 (415)
T ss_pred HHhcchhHHHHHHHhhhccceeee--eccceeeccccCC--CCccHHHHHHHHHHHHHHHHhccchheeecccCCcchhh
Confidence 99999999999999998 333222 2222233344443 57999999999999999999999999998876542 22
Q ss_pred cccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHH
Q psy6337 513 LTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 592 (797)
Q Consensus 513 ~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~ 592 (797)
..| +-.|+ .-.+++|+|.|++ +|.++||||||+||++|+.++|++.++-.+|..-..|..|.+.+.|++..+.+
T Consensus 186 VS~-~~~~D-~haG~iRvvnI~~----vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mersh~t 259 (415)
T KOG2105|consen 186 VSG-RGLPD-DHAGPIRVVNIEG----VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGT 259 (415)
T ss_pred ccC-CCCcc-cccCceEEEeecC----ccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHhcch
Confidence 222 11111 1123688999999 99999999999999999999999998887776667788899999999998888
Q ss_pred HHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6337 593 SAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKC 672 (797)
Q Consensus 593 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~~ 672 (797)
+..+..|.+-- .++..+.++++++ ..+.|+|.-..+++.++-..+.++.....
T Consensus 260 ~~a~taLLkCg-----------aed~vEavkk~qn----------------stk~LqKnn~~~lr~LA~~iahsL~Ns~d 312 (415)
T KOG2105|consen 260 EKALTALLKCG-----------AEDHVEAVKKLQN----------------STKILQKNNLNLLRDLAVHIAHSLRNSPD 312 (415)
T ss_pred HHHHHHHHhcc-----------hHHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHHHHhcCcC
Confidence 76655443332 1344555554444 34677776666777777666666655545
Q ss_pred cCCCCEEEEEEcCCHHHHhccCccccCCCcEEEEEeeC---CeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCC
Q psy6337 673 KEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSL---GELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSK 749 (797)
Q Consensus 673 ~~~~~~iv~~~~~~~~~L~~~~~~~~~~~~v~l~s~~~---~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~ 749 (797)
.+|. +|.+..+.+.+.+.-++.-....-.++++.+.+ |.+.+++..|.. ...+-..+++.+.|||||++
T Consensus 313 ~gG~-vi~~~~e~~sE~~N~ianei~s~EtlL~~~~~dek~GgLflLa~~~as-------vetLg~rvae~LeG~Ga~K~ 384 (415)
T KOG2105|consen 313 WGGV-VILHRKEGDSEFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPAS-------VETLGPRVAEVLEGKGAGKK 384 (415)
T ss_pred cCce-EEeehhhccHHHHHHHhhccCCeeEEEEEEeeccCCceEEEecCCchh-------hhhhhHHHHHHhhcCCCCcC
Confidence 5553 445666666654422221111122344445443 344444444432 34555588999999999877
Q ss_pred CCcccccccccccccc
Q psy6337 750 GSDVQHLYSMNPVKIS 765 (797)
Q Consensus 750 g~~~~~~aqg~g~~~~ 765 (797)
|. +||+.+++|
T Consensus 385 Gr-----~QGKaTkmS 395 (415)
T KOG2105|consen 385 GR-----FQGKATKMS 395 (415)
T ss_pred cc-----cccchhhhh
Confidence 54 888888873
No 13
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=5.1e-18 Score=199.93 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=116.7
Q ss_pred HHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccccccc
Q psy6337 434 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSL 513 (797)
Q Consensus 434 ~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~ 513 (797)
.+.+|||+|||++|++++|+.....+++..++++|+||+.. .++|++++.+||+.||++|.+++||....++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~-~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVP-EPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 46899999999999999995444456667789999999963 67999999999999999999999999999999999876
Q ss_pred ccccc----cCCCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeec-------ccCCeEEEEEEecHHH
Q psy6337 514 THLTV----IPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGESS 582 (797)
Q Consensus 514 ~g~~~----~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~-------~~~gv~RI~~vtG~~A 582 (797)
+.-.. ++...+++.+|||+||+ + .++||||||+|||+||.|+|++.++ .+++++||++++-...
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~----~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~~ 160 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD----F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWETK 160 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC----E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCCH
Confidence 53111 11122234589999998 4 4889999999999999999999954 4789999999875443
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.75 E-value=1.1e-17 Score=197.72 Aligned_cols=153 Identities=17% Similarity=0.230 Sum_probs=127.6
Q ss_pred CCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhhc-ceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHcc
Q psy6337 419 GLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 497 (797)
Q Consensus 419 G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl~-~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~ 497 (797)
-.+|.+.+|...|...+.+||++|||++|++++|+ ...+.|.. .++++|+||+. .++|++++.+||+.||++|.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~-~~~g~y~D~~~--~~lt~edl~~IEk~m~~iI~~n 105 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPW-IENGFYYDFDM--EPLTDKDLKRIKKEMDRIISRN 105 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cCCCEEEEecC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999999999999994 33444544 56899999984 4899999999999999999999
Q ss_pred CCeEEEEcCcccccccccccccCCCcC---------CCcEEEEEeCCCCccccCCCcccCccCCcccc--ccEEEeeeec
Q psy6337 498 VQVDRRHMRASELPSLTHLTVIPGEIY---------PDDVILIDISDKENVISREPCCGTHVFNTGHI--ESCTVIGYKS 566 (797)
Q Consensus 498 ~pV~~~~~~~~eA~~~~g~~~~~ge~y---------~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeI--g~fkIl~~~~ 566 (797)
+||...+++++||.+.+.- .++.| .+.+|||+||+ .+.++||||||+|||+| +.|+|+++++
T Consensus 106 ~pI~~~~v~~eEA~~~f~~---~~~~~k~~Ll~~~~~~~Iriy~ig~----~~~D~c~GpHv~sTg~I~~~~~kl~~~~g 178 (614)
T PLN02837 106 LPLVREEVSREEAQKRIMA---INEPYKLEILEGIKEEPITIYHIGE----EWWDLCAGPHVERTGKINKKAVELESVAG 178 (614)
T ss_pred CCEEEEEecHHHHHHHHHH---cCCchhHHHhccCCCCeEEEEEECC----eEEEecCCCCcccccccccceEEEEEeeh
Confidence 9999999999999775311 11222 23588999997 56888999999999999 8999999987
Q ss_pred c-------cCCeEEEEEEecHH
Q psy6337 567 Y-------NHGVRSIKCLTGES 581 (797)
Q Consensus 567 ~-------~~gv~RI~~vtG~~ 581 (797)
. +..++||++++-..
T Consensus 179 ~ywrg~~~~~~l~ri~g~~~~~ 200 (614)
T PLN02837 179 AYWRGDEKNQMLQRIYGTAWES 200 (614)
T ss_pred hhhcccccCcceEEEEEEecCC
Confidence 3 56789999998654
No 15
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.72 E-value=4.6e-17 Score=194.09 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=131.7
Q ss_pred ccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHH
Q psy6337 415 KVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 494 (797)
Q Consensus 415 ~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I 494 (797)
.+..+.+|...-....+-..+.+||++|||++|++++|+.....+.+..++++|+||+. +.++|++++.+||+.||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~-~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDR-ERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeC-CCCCCHHHHHHHHHHHHHHH
Confidence 35567788887778888888899999999999999999554445666678999999985 46799999999999999999
Q ss_pred HccCCeEEEEcCcccccccccccccCC------CcCCC-cEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeec-
Q psy6337 495 ADQVQVDRRHMRASELPSLTHLTVIPG------EIYPD-DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS- 566 (797)
Q Consensus 495 ~~~~pV~~~~~~~~eA~~~~g~~~~~g------e~y~~-~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~- 566 (797)
.+++||...+++++||.+++.-...+. ....+ .++|++||+ ..++||||||+|||+||.|+|++.++
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~-----~~d~c~G~hv~~Tg~i~~f~i~~~~~g 203 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE-----FVDLCRGPHVPSTGKIKAFKLLKVAGA 203 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC-----EEEECCCCCCCcccCCceeEEEEEcce
Confidence 999999999999999987643211111 11122 578999998 46899999999999999999999854
Q ss_pred ------ccCCeEEEEEEecHHHH
Q psy6337 567 ------YNHGVRSIKCLTGESSK 583 (797)
Q Consensus 567 ------~~~gv~RI~~vtG~~A~ 583 (797)
.+++++||++++-....
T Consensus 204 ~~l~~~~~~~l~Ri~g~~~~~~~ 226 (638)
T PRK00413 204 YWRGDSKNKMLQRIYGTAFADKK 226 (638)
T ss_pred EEcCCCcchheEEEEeeecCCHH
Confidence 37899999997765543
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.65 E-value=1.7e-15 Score=180.63 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=113.7
Q ss_pred HHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccccccc
Q psy6337 434 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSL 513 (797)
Q Consensus 434 ~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~ 513 (797)
...+||++|||.+|++++++.......+..++++|+||+. +.++|++++.+||+.||++|.+++||...+++++||.+.
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~-~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDL-PSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 5679999999999999999544333345558999999986 357999999999999999999999999999999999876
Q ss_pred ccccccC------CCcCC-CcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecc-------cCCeEEEEEEec
Q psy6337 514 THLTVIP------GEIYP-DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTG 579 (797)
Q Consensus 514 ~g~~~~~------ge~y~-~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~-------~~gv~RI~~vtG 579 (797)
+.-...+ ..... +.++|++||+ ..+.|+||||+|||+|+.|+|++.++. +++++||++++-
T Consensus 152 F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~ 226 (639)
T PRK12444 152 FQEMNDRLKLELLEAIPSGESITLYKQGE-----FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAF 226 (639)
T ss_pred HhhcCCchHHHHHhcCCCCCeEEEEEECC-----EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEec
Confidence 4311000 01111 3478999998 578899999999999999999998764 688999999765
Q ss_pred H
Q psy6337 580 E 580 (797)
Q Consensus 580 ~ 580 (797)
.
T Consensus 227 ~ 227 (639)
T PRK12444 227 S 227 (639)
T ss_pred C
Confidence 3
No 17
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.58 E-value=6.2e-15 Score=173.48 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=113.3
Q ss_pred HhhHHHHHHHHHHHhhc-ceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccccccccc
Q psy6337 437 AHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTH 515 (797)
Q Consensus 437 ~HTAtHLL~~Al~~vl~-~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g 515 (797)
+||++|||++|++++++ ...+.|+.+ ++++|+||+. +.++|++++.+||+.||++|.+++||....++++||.+.+.
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~-~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~ 78 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFEL-DRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK 78 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh
Confidence 59999999999999994 445567666 6779999985 36799999999999999999999999999999999987653
Q ss_pred ccccCCCcC----------CCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecc-------cCCeEEEEEEe
Q psy6337 516 LTVIPGEIY----------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT 578 (797)
Q Consensus 516 ~~~~~ge~y----------~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~-------~~gv~RI~~vt 578 (797)
++..| .+.++|+.+|+ ++.+.|+||||+|||.|+.|+|.+..+. +..++||++++
T Consensus 79 ----~~~~~k~~Ll~~~~~~~~v~vy~~g~----~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~ 150 (563)
T TIGR00418 79 ----VLEPYKLELLDEIPNGVKRTPYGWGK----AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTA 150 (563)
T ss_pred ----ccChhHHHHHhcCCCCCeEEEEEeCC----EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeecc
Confidence 22333 34688999998 8999999999999999999999987653 46789999987
Q ss_pred cHH
Q psy6337 579 GES 581 (797)
Q Consensus 579 G~~ 581 (797)
-..
T Consensus 151 ~~~ 153 (563)
T TIGR00418 151 WAD 153 (563)
T ss_pred CCC
Confidence 433
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.47 E-value=6.6e-13 Score=159.23 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=114.7
Q ss_pred HHHHHhhHHHHHHHHHHHhh-cceEecccccCC-CceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccc
Q psy6337 433 GCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFS-DECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEL 510 (797)
Q Consensus 433 ~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~-d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA 510 (797)
.-+.+||++|||..|++++| ..+. .|.++.+ +++|+||...+.++|++++.+||+.|+++|.+++||+...++++||
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~~~~l~-ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA 197 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEYGCKLC-IGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEA 197 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEE-ecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHH
Confidence 45789999999999999988 3333 3656644 7889999743347999999999999999999999999999999999
Q ss_pred cccccccccCC---CcCC--CcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecc-------cCCeEEEEEEe
Q psy6337 511 PSLTHLTVIPG---EIYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT 578 (797)
Q Consensus 511 ~~~~g~~~~~g---e~y~--~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~-------~~gv~RI~~vt 578 (797)
.+++.-..+.- ...| +.++|++||+ ..++|.||||+|||.|+.|+|++.++. +..++||++++
T Consensus 198 ~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~-----~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~s 272 (686)
T PLN02908 198 LEMFSENKFKVEIINDLPEDATITVYRCGP-----LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGIS 272 (686)
T ss_pred HHHHhhCCcHHHHHhhCCCCCeeEEEEECC-----EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeec
Confidence 87542110000 1123 2477999998 567899999999999999999998743 46789999998
Q ss_pred cHHHHH
Q psy6337 579 GESSKA 584 (797)
Q Consensus 579 G~~A~~ 584 (797)
-+....
T Consensus 273 fp~~~~ 278 (686)
T PLN02908 273 FPDKKL 278 (686)
T ss_pred cCChHH
Confidence 766543
No 19
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.41 E-value=1.4e-13 Score=106.83 Aligned_cols=44 Identities=36% Similarity=0.548 Sum_probs=38.4
Q ss_pred EEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEE
Q psy6337 528 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 575 (797)
Q Consensus 528 vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~ 575 (797)
+|||+||+ ++.++||||||.||++||.|+|++.++.++|++|||
T Consensus 1 vRvv~i~~----~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD----FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETT----TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECC----eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 58999999 999999999999999999999999999999999996
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5.6e-11 Score=138.11 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=109.5
Q ss_pred HHHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccc
Q psy6337 433 GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPS 512 (797)
Q Consensus 433 ~~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~ 512 (797)
.-..+||++|||..|+.++++. ...| .+.+++|++||+. +.++|++++..||..+++++.+++++....+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~-~~~g-p~ie~gfyyd~~~-~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD-VTIG-PVIEEGFYYDFDV-KEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC-cccc-CcccceeEEeecc-CCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 3457899999999999999955 3346 6778999999996 35699999999999999999999999999999999977
Q ss_pred cccccccCC---CcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecc-------cCCeEEEEEEec
Q psy6337 513 LTHLTVIPG---EIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTG 579 (797)
Q Consensus 513 ~~g~~~~~g---e~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~-------~~gv~RI~~vtG 579 (797)
.++ -+.- +.-|.++.+++-|+ ..++|-|+||++||.| .|++++.++. +...+||+.++-
T Consensus 103 ~f~--~yK~~~i~~~~~~~s~y~~~~-----~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~ 171 (589)
T COG0441 103 PFG--PYKAELIDCKGHPLSEYSQGE-----FVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF 171 (589)
T ss_pred Hhh--hhHHHHHhcCCCCceeEecCc-----cccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc
Confidence 654 1100 01123455777665 7899999999999999 9999998753 677899987765
No 21
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.15 E-value=2.4e-11 Score=94.27 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=40.9
Q ss_pred EEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEE
Q psy6337 528 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 575 (797)
Q Consensus 528 vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~ 575 (797)
+|+|.||+ +|.+|||||||.||++||.|+|++.++.+.+++||+
T Consensus 1 vriv~i~~----~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD----FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECC----EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 47999999 899999999999999999999999999888888984
No 22
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.48 E-value=0.00022 Score=60.24 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCcEEEEEeeCCeEEEEEecCCCCCCCCcCHH-HHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHH
Q psy6337 700 SKPVLVLLYSLGELKARAYVPPQCTTPGFNAQ-AWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDI 778 (797)
Q Consensus 700 ~~~v~l~s~~~~kv~~~~~v~~~~~~~~~~A~-~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~ 778 (797)
++++++++..++++.+.+.++++ ++.. +|++.++..+||+|||.+ ..||+++++. ..++++++.
T Consensus 1 ~~~~i~~~~~~~~~~~s~rs~~~-----~~~~~~~~~~~~~~~~G~GGGh~-----~aAg~~~~~~-----~~l~~~~~~ 65 (68)
T PF02272_consen 1 DKPVIVFSEEDGKIKVSARSSKG-----VDDKGEILKELAEKLGGKGGGHP-----DAAGGSIPKP-----EKLEEFLKA 65 (68)
T ss_dssp -SEEEEEEEESSTEEEEEEESSS-----STHH-HHHHHCHHHGTCEEEEES-----SEEEEEESCG-----GHHHHHHHH
T ss_pred CeEEEEEEEcCCEEEEEEEECCc-----hhhHHHHHHHHHHHcCCCCCCCH-----HHhcccCCCc-----hhHHHHHHH
Confidence 35778888889999999888765 4555 999999999999998852 3578887774 448888877
Q ss_pred HHH
Q psy6337 779 ARR 781 (797)
Q Consensus 779 A~~ 781 (797)
+.+
T Consensus 66 ~~e 68 (68)
T PF02272_consen 66 LEE 68 (68)
T ss_dssp HHH
T ss_pred hcC
Confidence 654
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.54 E-value=0.0061 Score=71.90 Aligned_cols=87 Identities=8% Similarity=0.084 Sum_probs=62.0
Q ss_pred ccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccc
Q psy6337 461 RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVI 540 (797)
Q Consensus 461 ~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~ 540 (797)
.+++..||+|.... ..+|.++..++ ...| |.....++ ...|+.+|.
T Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~-~~~~~~~~--------------------~~~~~~~~~----- 75 (545)
T PRK14799 30 GLGERDFYIDVKSD-TSITLDEVKKA-------INEN-VLANVSIE--------------------NNQIVYKGN----- 75 (545)
T ss_pred cccceeEEEecCCC-ccccHHHHHHH-------HhcC-cceeeEee--------------------cCcEEEccC-----
Confidence 46788999999853 57887765442 3322 32222211 112446777
Q ss_pred cCCCccc-CccCCccccccEEEeeeecc----cCCeEEEEEEecHH
Q psy6337 541 SREPCCG-THVFNTGHIESCTVIGYKSY----NHGVRSIKCLTGES 581 (797)
Q Consensus 541 ~~e~CgG-THV~nTgeIg~fkIl~~~~~----~~gv~RI~~vtG~~ 581 (797)
-+.+|+| +||+|||.|+.|+++++++. +..++||++++-..
T Consensus 76 ~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~ 121 (545)
T PRK14799 76 KVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET 121 (545)
T ss_pred ceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC
Confidence 7899999 99999999999999999875 47799999998644
No 24
>KOG1637|consensus
Probab=93.93 E-value=0.029 Score=63.25 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEe
Q psy6337 436 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDF 471 (797)
Q Consensus 436 ~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df 471 (797)
.+||++|+|..|+.+.+ .+.+ .|. ..+++|++|+
T Consensus 69 fwhssahvlg~a~e~~~g~~lc-~Gp-p~~~gf~yd~ 103 (560)
T KOG1637|consen 69 FWHSSAHVLGEALEQEYGAHLC-IGP-PIEEGFYYDM 103 (560)
T ss_pred eeehhhhHhhHHHHHhcCeeEe-eCC-CCcCceehhh
Confidence 78999999999999999 6665 365 3578888887
No 25
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=81.76 E-value=0.78 Score=48.47 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCCcccCCchHHHHHHHHhCCCCcccccchHH
Q psy6337 27 LSKNYIDTGLGFERLVTILQNKTSTYDTDLFLP 59 (797)
Q Consensus 27 Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~p 59 (797)
+..-.+--=+||||||..|||+.|.||. .+.+
T Consensus 153 ~~pv~~EITYGLERiamylQ~vd~v~dl-~w~~ 184 (283)
T PRK09348 153 CKPVTGEITYGLERLAMYLQGVDNVYDL-VWND 184 (283)
T ss_pred ccccceeeehhHHHHHHHHhCCCceeee-ecCC
Confidence 4444556679999999999999999997 4443
No 26
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=81.09 E-value=0.82 Score=48.55 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.2
Q ss_pred cccCCchHHHHHHHHhCCCCcccccchHH
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLFLP 59 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF~p 59 (797)
.+--=+||||||..|||+.|.||- .|..
T Consensus 154 ~~EITYGLERiaMylQ~vd~v~dl-~w~~ 181 (293)
T TIGR00388 154 SVEITYGLERLAMYIQGVENVYDL-EWSD 181 (293)
T ss_pred ceeeehhHHHHHHHHhCCCeeeee-eecC
Confidence 355679999999999999999997 4443
No 27
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=80.89 E-value=0.88 Score=48.02 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCCcccCCchHHHHHHHHhCCCCcccc
Q psy6337 27 LSKNYIDTGLGFERLVTILQNKTSTYDT 54 (797)
Q Consensus 27 Lp~k~IDTGmGLERl~~vlQg~~snYdt 54 (797)
+..-.+--=+||||||..|||+.|.||.
T Consensus 149 ~~pv~~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 149 CKPISVEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred ccccceeeehhHHHHHHHHhCCCceecc
Confidence 4444456679999999999999999997
No 28
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=79.72 E-value=0.95 Score=48.08 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=21.2
Q ss_pred CCCCcccCCchHHHHHHHHhCCCCcccc
Q psy6337 27 LSKNYIDTGLGFERLVTILQNKTSTYDT 54 (797)
Q Consensus 27 Lp~k~IDTGmGLERl~~vlQg~~snYdt 54 (797)
+..-.+--=+||||||..|||+.+.||.
T Consensus 148 ~~pv~~EITYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 148 CKPVSVEITYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp -SS--EEEEEEHHHHHHHHCT-SSGGGS
T ss_pred ccccceehhhhHHHHHHHHhCCCeeEee
Confidence 4445566679999999999999999997
No 29
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=78.37 E-value=1.1 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred ccCCchHHHHHHHHhCCCCcccc
Q psy6337 32 IDTGLGFERLVTILQNKTSTYDT 54 (797)
Q Consensus 32 IDTGmGLERl~~vlQg~~snYdt 54 (797)
+.--+||||||..+||+.+.||-
T Consensus 159 ~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 159 GEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred eeeehhHHHHHHHHhCccceeEE
Confidence 44569999999999999999997
No 30
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=70.74 E-value=48 Score=39.50 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=42.2
Q ss_pred CCcEEEEEeeCCe-EEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHH
Q psy6337 700 SKPVLVLLYSLGE-LKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDI 778 (797)
Q Consensus 700 ~~~v~l~s~~~~k-v~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~ 778 (797)
++|+++++..++. .+.-+.+. .|++..++++.+...++++|||= . .|- |-.+ ..+++++-.+.
T Consensus 351 ~kP~ivls~~~~~~~kgS~Rs~-----~g~nl~~~l~~~~~~~l~~~GGH--~----~Aa--G~~i---~~~~~~~f~~~ 414 (539)
T TIGR00644 351 NKPVIVLAIDEGKGAKGSARSI-----SGIDLYDLLSELREALFLKFGGH--A----MAA--GLTL---KRENLEEFREK 414 (539)
T ss_pred CCCEEEEEEcCCceEEEeeccC-----CCCcHHHHHHHHHHhhccccCCh--H----HcC--eeEE---cHHHHHHHHHH
Confidence 8899888876653 22222222 47999999999988677777762 1 121 2111 13566666666
Q ss_pred HHHHHHhh
Q psy6337 779 ARRSADEL 786 (797)
Q Consensus 779 A~~fa~~~ 786 (797)
..+++...
T Consensus 415 l~~~~~~~ 422 (539)
T TIGR00644 415 LEEKFKKI 422 (539)
T ss_pred HHHHHHhh
Confidence 66555443
No 31
>KOG1501|consensus
Probab=70.14 E-value=5 Score=45.73 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=60.7
Q ss_pred cccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEE----eecccce---eeee
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRML----SDYSRMI---TVAL 103 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~~~~~~d~a~Rvi----aDH~R~~---~~~i 103 (797)
.|+||-||=-|-++-.|..+.|-..+|.|+.+...++....+++.++..-+.. .+-..++ ||-+-+- |=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr--Stev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR--STEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc--cceeeecCcchhhhhhHhhhhhhhh
Confidence 48999999999999999999999999999999999988765555444321111 1223344 4433332 3368
Q ss_pred cCCCcCCchhHHHHHH
Q psy6337 104 ADNMFPDATAKLRNVV 119 (797)
Q Consensus 104 aDG~~Psn~~vLRril 119 (797)
..|++||=+.-+|+++
T Consensus 150 geGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 150 GEGALPSLQHAHDMLL 165 (636)
T ss_pred ccccchhHHHHHHHhc
Confidence 8899998776566554
No 32
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=50.46 E-value=3.2 Score=49.51 Aligned_cols=55 Identities=20% Similarity=-0.028 Sum_probs=44.9
Q ss_pred EEEeeeee---eeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHH
Q psy6337 6 IEIWNIVF---ISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLE 62 (797)
Q Consensus 6 lEiWNlVF---mQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~ 62 (797)
.|.-+++| |+|-...++ ....|..-||+|+|+||.+|..++.++.|+. .|..|.+
T Consensus 143 ~~~~i~~~~~~~nfw~~g~~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 143 PEERILVFGKKDNFWEMGDT-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp ECCCEEEE-CCEEEEESSTS-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred CHHHeEecCCCCceEECCCC-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 45567899 999965544 6899999999999999999999999997776 5665433
No 33
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=46.99 E-value=9.8 Score=48.05 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=26.0
Q ss_pred cCCCCcccCCchHHHHHHHHhCCCCcccccchHH
Q psy6337 26 PLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLP 59 (797)
Q Consensus 26 ~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~p 59 (797)
++..-.+--=||||||+..|||+.+.||. .|.+
T Consensus 153 ~~~~~~~eitygler~~m~~q~~~~~~~~-~~~~ 185 (1000)
T PRK14908 153 PLDPISGEITYGIERIAMYLQKVNHFKDI-AWND 185 (1000)
T ss_pred eccccceeeeccHHHHHHHHhCCCeeeee-ecCC
Confidence 34445566679999999999999999997 4443
No 34
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=38.15 E-value=15 Score=39.93 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=23.2
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|||+|||++.+-|..|.=|+-+|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 55556899999999999999877765543
No 35
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=36.10 E-value=17 Score=38.81 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=16.3
Q ss_pred CcccCCchHHHHHHHHhCCCC
Q psy6337 30 NYIDTGLGFERLVTILQNKTS 50 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~s 50 (797)
..+==||||||||.+..|.+.
T Consensus 212 ~~~A~G~GleRlam~~~gi~d 232 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPD 232 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SS
T ss_pred eEEEecCCHHHHHHHHcCCch
Confidence 344459999999999999874
No 36
>KOG2783|consensus
Probab=33.84 E-value=20 Score=40.44 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=19.2
Q ss_pred cCCchHHHHHHHHhCCCCcccccchHHHHH
Q psy6337 33 DTGLGFERLVTILQNKTSTYDTDLFLPLLE 62 (797)
Q Consensus 33 DTGmGLERl~~vlQg~~snYdtDlF~pl~~ 62 (797)
=-||||||||.+|=+-| |.-+|...=+
T Consensus 298 afglgLerLAMll~~Ip---DiRlfWs~De 324 (436)
T KOG2783|consen 298 AFGLGLERLAMLLFDIP---DIRLFWSFDE 324 (436)
T ss_pred eeeccHHHHHHHHhcCc---chheeeccch
Confidence 35999999999997776 3445554433
No 37
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=31.44 E-value=23 Score=39.36 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=22.8
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+..+-|..+.=|+=+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5556699999999999999987776444
No 38
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.60 E-value=4.9e+02 Score=26.66 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6337 636 AVHKQNDHLLAELSKNVKLKLRQFA 660 (797)
Q Consensus 636 ~~k~~l~~~l~~l~k~i~~~~~~~~ 660 (797)
..|..+++++++|++++..+++++.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888877777666554
No 39
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=29.30 E-value=29 Score=38.55 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=21.6
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==.|||+|||++++-|.++.=|+-.|.
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv~~FP 331 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDVIPFP 331 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGGSSS-
T ss_pred ccCcceehHHHHHHHHcCCCcHHheecCC
Confidence 34456899999999999999887775553
No 40
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=28.84 E-value=28 Score=37.65 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=22.4
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|+|+|||+.++-|..+.=|+-+|
T Consensus 237 p~~G~glGieRL~m~~~g~~~Irdv~~F 264 (269)
T cd00669 237 PHGGLGIGIDRLIMLMTNSPTIREVIAF 264 (269)
T ss_pred CCceEeeHHHHHHHHHhCCCcHHHcccC
Confidence 5667799999999999999886555443
No 41
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=30 Score=38.66 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=15.0
Q ss_pred cCCchHHHHHHHHhCCC
Q psy6337 33 DTGLGFERLVTILQNKT 49 (797)
Q Consensus 33 DTGmGLERl~~vlQg~~ 49 (797)
==|||+||||.+.-|.+
T Consensus 304 AfGlGlERlAMLkygI~ 320 (335)
T COG0016 304 AFGLGLERLAMLKYGIP 320 (335)
T ss_pred EEeecHHHHHHHHhCCc
Confidence 56999999999998875
No 42
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=28.40 E-value=27 Score=40.73 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=21.1
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||++.+-|.++.=|+-+|
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~F 444 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPF 444 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccC
Confidence 4444599999999999999875555444
No 43
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=28.20 E-value=28 Score=41.89 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=23.9
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|||||||++.|-|..+.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 56667999999999999999877775553
No 44
>PLN02532 asparagine-tRNA synthetase
Probab=27.20 E-value=29 Score=42.00 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=23.5
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|||||||++.|-|.++.=|+=+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 56667999999999999999877774443
No 45
>PLN02603 asparaginyl-tRNA synthetase
Probab=27.11 E-value=30 Score=41.52 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=23.4
Q ss_pred CCcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 29 KNYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 29 ~k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
.+|==-|||||||+..|-|..+.=|+-+|
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~F 556 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPF 556 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeec
Confidence 35667799999999999999887666444
No 46
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=27.07 E-value=30 Score=40.04 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.0
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|||+|||+..+-|.++.=|+-+|.
T Consensus 392 P~~G~GiGidRL~m~l~g~~~Irdv~~FP 420 (428)
T TIGR00458 392 PHAGWGLGAERFVMFLLGLKNIREAVLFP 420 (428)
T ss_pred CcCceeecHHHHHHHHcCCCchheEEecc
Confidence 45556999999999999999877765543
No 47
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=23 Score=41.29 Aligned_cols=27 Identities=37% Similarity=0.755 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHhCCCCcccccchHHHH
Q psy6337 34 TGLGFERLVTILQNKTSTYDTDLFLPLL 61 (797)
Q Consensus 34 TGmGLERl~~vlQg~~snYdtDlF~pl~ 61 (797)
.|||..||+.+|.|.+|.=|. ++.|.+
T Consensus 472 ~GiGIDRLvMllT~~~sIRdV-ilFP~m 498 (502)
T COG1190 472 LGIGIDRLVMLLTNSPSIRDV-ILFPAM 498 (502)
T ss_pred ccccHHHHHHHHcCCCchhhe-eccccc
Confidence 699999999999999999988 555543
No 48
>PLN02850 aspartate-tRNA ligase
Probab=26.55 E-value=29 Score=41.25 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=23.0
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|||||||+..+-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 34456999999999999999877775554
No 49
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=26.35 E-value=34 Score=38.34 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=18.3
Q ss_pred CCCCcccC--------CchHHHHHHHHhCCC
Q psy6337 27 LSKNYIDT--------GLGFERLVTILQNKT 49 (797)
Q Consensus 27 Lp~k~IDT--------GmGLERl~~vlQg~~ 49 (797)
|..-.||. |||+||||.+.-|.+
T Consensus 293 l~~~gid~~~~~G~AfG~GleRlaMl~ygi~ 323 (339)
T PRK00488 293 LRNVGIDPEEYSGFAFGMGIERLAMLKYGID 323 (339)
T ss_pred HHHcCCCcccceEEEEeecHHHHHHHHhCCc
Confidence 44555665 999999999998876
No 50
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=26.02 E-value=32 Score=40.09 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=22.3
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+..+-|..+.=|+-+|
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv~~F 441 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDVIPF 441 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccC
Confidence 6777799999999999999885555333
No 51
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=25.74 E-value=38 Score=39.17 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCcccCCchHHHHHHHHhCCCCcccccchHH
Q psy6337 28 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLP 59 (797)
Q Consensus 28 p~k~IDTGmGLERl~~vlQg~~snYdtDlF~p 59 (797)
+.+|==-|+|||||++.+-|..+.=|+-+|+.
T Consensus 397 ~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 397 MPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred CCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 45666779999999999999988777766653
No 52
>PRK06462 asparagine synthetase A; Reviewed
Probab=25.26 E-value=34 Score=38.21 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+..+-|..+.=|+-+|
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~F 326 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPF 326 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeec
Confidence 3444589999999999999886555433
No 53
>PLN02221 asparaginyl-tRNA synthetase
Probab=24.94 E-value=32 Score=41.23 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.5
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||||||++.+-|.++.=|+-+|
T Consensus 536 Ph~G~GlGiERLvm~l~g~~nIRdvi~F 563 (572)
T PLN02221 536 KHCGFGLGFERMILFATGIDNIRDVIPF 563 (572)
T ss_pred CCceEEEeHHHHHHHHcCCCchheEeec
Confidence 4555689999999999999987777544
No 54
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=24.63 E-value=33 Score=40.48 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHhCCCCcccccchH
Q psy6337 34 TGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 34 TGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
-|||+|||+.+|-|..|.=|+=+|.
T Consensus 466 ~GiGiDRLvMlltg~~~Irdvi~FP 490 (496)
T TIGR00499 466 LGIGIDRLVMLLTDSKSIRDVILFP 490 (496)
T ss_pred EEEhHHHHHHHHhCCCcHheeccCC
Confidence 4899999999999999877775543
No 55
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=23.92 E-value=36 Score=40.75 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.0
Q ss_pred cccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
|==-|+|||||+.++-|..+.=|+-+|.
T Consensus 515 hgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 515 HGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 3345999999999999998876665553
No 56
>PLN02502 lysyl-tRNA synthetase
Probab=23.36 E-value=37 Score=40.59 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.9
Q ss_pred cCCchHHHHHHHHhCCCCcccccch
Q psy6337 33 DTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 33 DTGmGLERl~~vlQg~~snYdtDlF 57 (797)
=-|||+|||+.+|-|.+|.=|+=+|
T Consensus 522 G~GiGiDRLvMlltg~~sIrdVi~F 546 (553)
T PLN02502 522 GWGLGIDRLVMLLTDSASIRDVIAF 546 (553)
T ss_pred eEEehHHHHHHHHcCCcchheeecC
Confidence 3589999999999999998777444
No 57
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=23.13 E-value=40 Score=39.14 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=22.6
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+..+-|..+.=|+-+|
T Consensus 401 p~~G~giGidRl~m~~~g~~~Irdv~~F 428 (437)
T PRK05159 401 PHGGFGLGLERLTMKLLGLENIREAVLF 428 (437)
T ss_pred CCCeeeEhHHHHHHHHcCCCchhEEeec
Confidence 5556799999999999999887666444
No 58
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=22.87 E-value=38 Score=40.07 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=21.0
Q ss_pred CCchHHHHHHHHhCCCCcccccchH
Q psy6337 34 TGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 34 TGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
-|+|+|||+.+|-|.+|.=|+=+|+
T Consensus 475 ~GiGiDRLvMlltg~~sIrdvi~FP 499 (505)
T PRK12445 475 LGIGIDRMIMLFTNSHTIRDVILFP 499 (505)
T ss_pred EEEhHHHHHHHHcCCCchheEecCC
Confidence 4899999999999999987775553
No 59
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=22.58 E-value=42 Score=37.40 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=20.5
Q ss_pred cccCCchHHHHHHHHhCCCCcccccch
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
|==-|+|||||+..+-|.++.=|+-.|
T Consensus 298 ~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 298 TGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 334589999999999999886555333
No 60
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=21.72 E-value=40 Score=39.79 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=21.6
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+..+-|..|.=|+=+|
T Consensus 457 P~gG~GiGiDRLvm~ltg~~~Irdvi~F 484 (491)
T PRK00484 457 PTGGLGIGIDRLVMLLTDSPSIRDVILF 484 (491)
T ss_pred CCCeEEEeHHHHHHHHhCCCcHHhcccC
Confidence 3334589999999999999887666444
No 61
>KOG4603|consensus
Probab=20.07 E-value=7.2e+02 Score=25.31 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6337 616 NQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQF 659 (797)
Q Consensus 616 ~~~~~~v~~l~~~l~~~i~~~~k~~l~~~l~~l~k~i~~~~~~~ 659 (797)
..++.+++.|...|.. .++++++.+|.+++....+.+
T Consensus 103 s~veaEik~L~s~Lt~-------eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 103 SYVEAEIKELSSALTT-------EEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666532 256666667766665554443
Done!