Query psy6337
Match_columns 797
No_of_seqs 322 out of 2136
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:48:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 2E-126 8E-131 1113.8 27.9 489 5-580 208-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-120 5E-125 1064.7 26.1 478 5-580 207-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 1.9E-79 6.6E-84 670.2 14.6 234 1-276 203-439 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 2.1E-79 7.4E-84 673.5 10.9 239 2-277 187-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 1.1E-53 3.7E-58 446.7 22.7 219 315-585 15-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 1E-49 3.5E-54 410.5 18.4 183 358-577 29-214 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 1.1E-25 3.6E-30 220.4 13.6 143 433-580 4-152 (157)
8 1tke_A Threonyl-tRNA synthetas 99.9 5.2E-25 1.8E-29 227.9 13.4 168 399-578 39-222 (224)
9 1nyr_A Threonyl-tRNA synthetas 99.9 9.2E-22 3.2E-26 232.7 13.4 167 399-582 41-225 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.8 4.2E-21 1.4E-25 226.6 13.0 165 399-579 39-223 (642)
11 2zvf_A Alanyl-tRNA synthetase; 99.6 7E-16 2.4E-20 152.7 12.4 166 578-785 1-168 (171)
12 3g98_A Alanyl-tRNA synthetase; 99.3 2.2E-12 7.5E-17 118.9 8.7 102 672-784 5-110 (111)
13 1j5w_A Glycyl-tRNA synthetase 82.4 0.46 1.6E-05 48.9 1.8 28 27-54 162-189 (298)
14 3rf1_A Glycyl-tRNA synthetase 81.3 0.53 1.8E-05 48.7 1.8 26 29-54 176-201 (311)
15 2i9o_A MHB8A peptide; beta-hai 41.9 11 0.00037 26.2 1.5 13 742-754 12-24 (37)
16 2i7u_A Four-alpha-helix bundle 38.4 13 0.00045 28.4 1.7 17 732-748 17-33 (62)
17 1nnh_A Asparaginyl-tRNA synthe 35.5 13 0.00046 39.1 1.8 32 26-57 253-284 (294)
18 2atz_A H. pylori predicted cod 35.2 93 0.0032 29.9 7.2 102 416-524 65-168 (180)
19 3a5y_A GENX, putative lysyl-tR 29.8 19 0.00063 39.0 1.8 27 31-57 314-340 (345)
20 3bju_A Lysyl-tRNA synthetase; 26.5 22 0.00076 40.6 1.7 28 30-57 475-502 (521)
21 3nem_A Aspartyl-tRNA synthetas 26.4 23 0.00078 39.5 1.7 27 31-57 403-429 (438)
22 1wyd_A Hypothetical aspartyl-t 26.2 23 0.00078 39.4 1.7 30 27-57 391-420 (429)
23 1n9w_A Aspartyl-tRNA synthetas 25.5 24 0.00083 39.1 1.7 30 30-59 386-415 (422)
24 3m4p_A Ehasnrs, asparaginyl-tR 25.3 24 0.00083 39.5 1.7 26 32-57 422-447 (456)
25 4ex5_A Lysine--tRNA ligase; st 25.2 25 0.00084 40.2 1.8 24 34-57 499-522 (529)
26 1e1o_A Lysyl-tRNA synthetase, 24.9 25 0.00085 40.0 1.7 28 30-57 470-497 (504)
27 3a74_A Lysyl-tRNA synthetase; 24.8 25 0.00085 39.9 1.7 28 30-57 460-487 (493)
28 3i7f_A Aspartyl-tRNA synthetas 24.6 25 0.00087 40.3 1.7 25 33-57 515-539 (548)
29 1x54_A Asparaginyl-tRNA synthe 24.0 27 0.00092 38.9 1.8 28 30-57 398-425 (434)
30 2xgt_A Asparaginyl-tRNA synthe 23.8 27 0.00093 38.9 1.7 28 30-57 399-426 (435)
31 1eov_A ASPRS, aspartyl-tRNA sy 23.3 28 0.00096 39.3 1.8 28 30-57 451-478 (487)
32 1c0a_A Aspartyl tRNA synthetas 21.2 32 0.0011 39.8 1.7 29 30-58 527-555 (585)
33 1l0w_A Aspartyl-tRNA synthetas 20.7 34 0.0012 39.6 1.8 29 30-58 521-549 (580)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=2.3e-126 Score=1113.83 Aligned_cols=489 Identities=22% Similarity=0.361 Sum_probs=423.9
Q ss_pred eEEEeeeeeeee-------------ccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCC
Q psy6337 5 LIEIWNIVFISH-------------KRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK 71 (797)
Q Consensus 5 ~lEiWNlVFmQy-------------~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~ 71 (797)
.||||||||||| || ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|++
T Consensus 208 glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~ 285 (752)
T 2zze_A 208 GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIE 285 (752)
T ss_dssp TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCC
T ss_pred CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCC
Confidence 499999999999 88 69999999999999999999999999999999999 9999999999999985
Q ss_pred -----------CCCCcccCCCCCCC------------------------CceEEEEeecccceeeeecCCCcCCchh---
Q psy6337 72 -----------PYGRTFTTSNRTDL------------------------DTSYRMLSDYSRMITVALADNMFPDATA--- 113 (797)
Q Consensus 72 -----------~y~g~~~~~~~~~~------------------------d~a~RviaDH~R~~~~~iaDG~~Psn~~--- 113 (797)
+|+|.++.++...+ +.++||||||+||++|||+||++|||+|
T Consensus 286 y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGY 365 (752)
T 2zze_A 286 KIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGY 365 (752)
T ss_dssp CCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHH
T ss_pred ccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhH
Confidence 24455542221211 4688899999999999999999999994
Q ss_pred HHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCc
Q psy6337 114 KLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQP 193 (797)
Q Consensus 114 vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p 193 (797)
|||||||||+||+++++... + |++|||.|++.|+++||||.++++.|.+||+.||++|.+|
T Consensus 366 vlRrilRRa~r~~~~lg~~~--~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~T---------------- 426 (752)
T 2zze_A 366 LARLLIRKSIRHLRELGLEV--P-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAET---------------- 426 (752)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--C-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHhCCCc--c-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHH----------------
Confidence 99999999999999887766 7 9999999999999999999999999999999999999985
Q ss_pred chhhhccccchhHhhHHHHHHHHHhcCCC--CCccChhhhhhhhccCCCChHHHHHHHHHcCCccCHH-HHHHHHHHHHH
Q psy6337 194 ELEQFNIMEEPGLVLGVKYLTKQLARDPS--ITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKE 270 (797)
Q Consensus 194 ~~~~~~~~~~~~l~~g~~~l~~~~~~~~~--~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~ 270 (797)
|++|+++|++.+++.++ .+.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+
T Consensus 427 ------------l~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~ 494 (752)
T 2zze_A 427 ------------LRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAE 494 (752)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGG
T ss_pred ------------HHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHH
Confidence 56677777777665321 2579999999999999999999999999999999999 89999999998
Q ss_pred HHHhhhcCCCcchhhhcccCCCCCCCCCcceeeecCCCCcccccccceEEEEEEECCeeeecccccccccccCccccchh
Q psy6337 271 RSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQ 350 (797)
Q Consensus 271 ~s~~~~~~~~~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 350 (797)
++|++....+.... ....+|+|+..+ |+.. |. .+++|+|+++..
T Consensus 495 ~~r~~~~~~~~~~~--~~~~~~~T~~l~-----Y~~~---yl-~~~~a~Vl~i~~------------------------- 538 (752)
T 2zze_A 495 RTKEEKGEELVDFE--LLKDLPDTRRLY-----YEDP---FM-XEFDAXVLRVIX------------------------- 538 (752)
T ss_dssp CC-------CCCSS--SSSSSCCCEEHH-----HHCT---TC-CEEEEEEEEEET-------------------------
T ss_pred HHhhcccccchhhH--HhccCCCceeec-----ccCC---cc-ceEEEEEEEEEc-------------------------
Confidence 88754211110111 112345664332 3332 31 468999999862
Q ss_pred ccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhh
Q psy6337 351 LEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 430 (797)
Q Consensus 351 ~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~r 430 (797)
.+||||+|||||||||||+|+|+|..++ ..+.|.+|++.+|.++|++... +.+++|++|.+.|||+|
T Consensus 539 ------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~~--~~l~vGd~V~~~VD~~r 605 (752)
T 2zze_A 539 ------DWVILDATAFYPEGGGQPYDTGVLIVNG-----REVXVTNVQXVGXVIIHXVEDP--GAFXEGMIVHGXIDWXR 605 (752)
T ss_dssp ------TEEEESEECSCCSBTTBCCCCEEEEETT-----EEEEEEEEEEETTEEEEEESCG--GGCCTTCEEEEEECHHH
T ss_pred ------CEEEEeCCCCCCCCCCCCCCEEEEEeCC-----EEEEEEeeeecCcEEEEecccc--CccCcCCeEEEEEeHHH
Confidence 2599999999999999999999998755 4799999999999999999752 67889999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccc
Q psy6337 431 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASE 509 (797)
Q Consensus 431 R~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~e 509 (797)
|+.+|++|||+|||++||+++| .+++|.|+++.++++||||+++ +++|++++.+||+.||++|++++||.+.+++++|
T Consensus 606 R~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~-~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eE 684 (752)
T 2zze_A 606 RIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY-XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTT 684 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECS-SCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCccceeecCHHH
Confidence 9999999999999999999999 7899999999999999999985 6899999999999999999999999999999999
Q ss_pred ccccccccccC-CCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecH
Q psy6337 510 LPSLTHLTVIP-GEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 580 (797)
Q Consensus 510 A~~~~g~~~~~-ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~ 580 (797)
|++.++++.++ +++|.+.||||+||+ +|+++||||||.|||+||.|+|++++++++|++||+|+||.
T Consensus 685 A~~~~~~~lf~~ge~ygd~VRVV~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 685 AEQXYGFRLYQGGVVPGREIRVVXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp HHHHHCGGGCSSCCCCSSEEEEEEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred HhhcchhhhhcCCCCCCCeEEEEEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 98887765554 688888999999999 99999999999999999999999999999999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.6e-120 Score=1064.74 Aligned_cols=478 Identities=22% Similarity=0.342 Sum_probs=419.9
Q ss_pred eEEEeeeeeeeeccCCCCccc-------cCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCC------
Q psy6337 5 LIEIWNIVFISHKRVSADTIV-------PLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK------ 71 (797)
Q Consensus 5 ~lEiWNlVFmQy~r~~~g~l~-------~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~------ 71 (797)
.|||||+|||||||+++|.|+ |||+||||||||||||||+|||++||||| +|.|||++|++++|++
T Consensus 207 g~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~ 285 (739)
T 2ztg_A 207 GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDE 285 (739)
T ss_dssp TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCH
T ss_pred CEEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCcccccc
Confidence 499999999999999999998 99999999999999999999999999999 9999999999999984
Q ss_pred ----------CCCCcccCCCCCCCC------------------------ceEEEEeecccceeeeecCCCcCCchh---H
Q psy6337 72 ----------PYGRTFTTSNRTDLD------------------------TSYRMLSDYSRMITVALADNMFPDATA---K 114 (797)
Q Consensus 72 ----------~y~g~~~~~~~~~~d------------------------~a~RviaDH~R~~~~~iaDG~~Psn~~---v 114 (797)
+|+|.++.++...++ .++||||||+||++|||+||++|||+| |
T Consensus 286 ~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYv 365 (739)
T 2ztg_A 286 RVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYL 365 (739)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHH
T ss_pred chhhhhhhhhhcccccCcccchhHHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchH
Confidence 233444433211111 478899999999999999999999994 9
Q ss_pred HHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcc
Q psy6337 115 LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPE 194 (797)
Q Consensus 115 LRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~ 194 (797)
||||||||+||+++++... + |++|||+|++.|++ ||.++++.|.+||+.||++|.+
T Consensus 366 lRrilRRa~r~~~~lg~~~--~-l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~------------------ 421 (739)
T 2ztg_A 366 ARLMIRRSLRLAEELELGL--D-LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRT------------------ 421 (739)
T ss_dssp HHHHHHHHHHHHHHTTCSS--C-HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHhCCCc--c-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 9999999999999887766 7 99999999999999 9999999999999999999988
Q ss_pred hhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhccCCCChHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHH
Q psy6337 195 LEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSK 273 (797)
Q Consensus 195 ~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~s~ 273 (797)
||++|+++|++.+++.+ + |||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||
T Consensus 422 ----------Tl~~G~~~l~~~~~~~~--~-l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~ 488 (739)
T 2ztg_A 422 ----------TVSKGTRLVERLVERKK--K-LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAE 488 (739)
T ss_dssp ----------HHHHHHHHHHHHHHHHS--B-CCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCC
T ss_pred ----------HHHHHHHHHHHHHHHhc--C-CCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHh
Confidence 46778888888887654 2 9999999999999999999999999999999999 89999999988876
Q ss_pred hhhcCCCcchhhhcccCCCCCCCCCcceeeecCCCCcccccccceEEEEEEECCeeeecccccccccccCccccchhccC
Q psy6337 274 AKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEH 353 (797)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 353 (797)
++.. .+. .+ ....|+|+..| |+.. |. .+++|+|+++..
T Consensus 489 ~~~~---~~~-~~-~~~~~~T~~l~-----Y~~~---y~-~~~~a~Vl~i~~---------------------------- 526 (739)
T 2ztg_A 489 KVQE---KKI-TL-QNEYPATEKLY-----YDDP---TL-LEFEAEVIGVEG---------------------------- 526 (739)
T ss_dssp CCCC---CCC-CC-SSCCCCCEECT-----TTCT---TC-CEEEEEEEEEET----------------------------
T ss_pred hccc---cch-hh-hccCCCceeec-----ccCC---cc-cEEEEEEEEEEc----------------------------
Confidence 5421 111 11 11245664333 3321 21 468999999862
Q ss_pred CCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCccc-CCCCeEEEEechhhhH
Q psy6337 354 NAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKV-TPGLTSRVEVDARMRL 432 (797)
Q Consensus 354 ~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l-~~G~~V~~~VD~~rR~ 432 (797)
.+||||+|||||||||||+|+|+|..++ ..+.|.+|++.+|.++|++.. .+ ++|++|.+.|||+||+
T Consensus 527 ---~~VVLD~TpFYpEgGGQ~~D~G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~----~~~~~Gd~V~~~VD~~rR~ 594 (739)
T 2ztg_A 527 ---DFVILNRSAFYPESGGQDNDVGYLIANG-----GKFEVVDVLEADGVVLHVVKG----AKPEVGTKVKGVIDSDVRW 594 (739)
T ss_dssp ---TEEEESEECCCCSBTTBCCCCEEEEETT-----EEEEECEEEEETTEEEEECCS----SCCCTTCEEEEEECHHHHH
T ss_pred ---CEEEEeCCCCCCCCCCCCCCEEEEEECC-----EEEEEEEEEEECCEEEEEEcc----cCCCCCCEEEEEEcHHHHH
Confidence 2599999999999999999999998755 479999999999999999863 34 6899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccccc
Q psy6337 433 GCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELP 511 (797)
Q Consensus 433 ~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~ 511 (797)
.+|++|||+|||++||+++| .+++|.||++.++++||||+++ .++|++++.+||+.||++|++++||.+.+++++||.
T Consensus 595 ~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~-~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~ 673 (739)
T 2ztg_A 595 RHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHF-RRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAE 673 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECS-SCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 99999999999999999999 7899999999999999999975 689999999999999999999999999999999998
Q ss_pred ccccccccC-CCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecH
Q psy6337 512 SLTHLTVIP-GEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 580 (797)
Q Consensus 512 ~~~g~~~~~-ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~ 580 (797)
+.++++.++ +++|.+.||||+||+ +.++||||||+|||+||.|+|++++++++|++||+|+||.
T Consensus 674 ~~~~l~L~~~~~~~~d~VRVV~IGd-----~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 674 RKFGFRLYQGGVPPGRKIRVVQVGD-----DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp HHHCGGGGTTCCCCSSEEEEEEETT-----EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESC
T ss_pred HhCCHhhhcCCCCCCCeEEEEEECC-----eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEecC
Confidence 888777665 567777899999998 8999999999999999999999999999999999999996
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=1.9e-79 Score=670.16 Aligned_cols=234 Identities=28% Similarity=0.524 Sum_probs=221.5
Q ss_pred CCCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCC
Q psy6337 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS 80 (797)
Q Consensus 1 d~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~ 80 (797)
|+|+||||||||||||||+++|+|+|||+||||||||||||||||||++||||||+|.|||++|++++|+. |
T Consensus 203 d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~------- 274 (441)
T 3hy0_A 203 DGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D------- 274 (441)
T ss_dssp TSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C-------
T ss_pred CCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c-------
Confidence 67899999999999999999999999999999999999999999999999999999999999999999973 3
Q ss_pred CCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhh
Q psy6337 81 NRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 157 (797)
Q Consensus 81 ~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~ 157 (797)
..+++|||||||+||++|||+||++|||+ ||||||||||+||+++++... +||++|||+|++.|+++||||.
T Consensus 275 ---~~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~~Lg~~~--~fl~~Lv~~v~~~m~~~yPeL~ 349 (441)
T 3hy0_A 275 ---LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKE--TFFYKLVGPLIDVMGSAGEDLK 349 (441)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCS--CCGGGGHHHHHHHHGGGGHHHH
T ss_pred ---cccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhhhhhHHH
Confidence 13789999999999999999999999999 499999999999999887776 7999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhcc
Q psy6337 158 DSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDT 237 (797)
Q Consensus 158 ~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~LydT 237 (797)
++++.|.+||..||++|.+ ||++|+++|++.+++.++ +.|||++||+||||
T Consensus 350 ~~~~~I~~vi~~EE~~F~~----------------------------TL~~G~~~l~~~~~~~~~-~~l~g~~af~LyDT 400 (441)
T 3hy0_A 350 RQQAQVEQVLKTEEEQFAR----------------------------TLERGLALLDEELAKLSG-DTLDGETAFRLYDT 400 (441)
T ss_dssp HTHHHHHHHHHHHHHHHHT----------------------------THHHHHHHHHHHHHSCCS-SEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhcC-CCCCHHHHHhhhhc
Confidence 9999999999999999987 678899999999987764 78999999999999
Q ss_pred CCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhh
Q psy6337 238 YGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 276 (797)
Q Consensus 238 yGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~ 276 (797)
||||+|||++||+|+|++||+++|+++|++||++||++.
T Consensus 401 yGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~~ 439 (441)
T 3hy0_A 401 YGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREAS 439 (441)
T ss_dssp HCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998763
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=2.1e-79 Score=673.50 Aligned_cols=239 Identities=30% Similarity=0.540 Sum_probs=218.7
Q ss_pred CCCeEEEeeeeeeeeccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccCCC
Q psy6337 2 RNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSN 81 (797)
Q Consensus 2 ~p~~lEiWNlVFmQy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~~~ 81 (797)
+|+||||||||||||||+++|+|.|||+||||||||||||||||||++||||||+|.|||++|++++|+ +|..
T Consensus 187 ~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~-~Y~~------ 259 (465)
T 1yfs_A 187 DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGK-KYGE------ 259 (465)
T ss_dssp HHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCC-CTTS------
T ss_pred CCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCccchhhhHHHHHHHHHHHhCC-CCCC------
Confidence 478999999999999999999999999999999999999999999999999999999999999999998 4753
Q ss_pred CCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhhh
Q psy6337 82 RTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQD 158 (797)
Q Consensus 82 ~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~ 158 (797)
....|++|||||||+||++|||+||++|||+ ||||||||||+|||++++... +||++|||+|++.|+++||||.+
T Consensus 260 ~~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~--~fl~~Lv~~v~~~m~~~yPel~~ 337 (465)
T 1yfs_A 260 KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIEN--PFLYKGVDLVVDIMKEPYPELEL 337 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCS--CCHHHHHHHHHHHHTTTCTHHHH
T ss_pred CcccceeEEEEcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhccCchhhh
Confidence 1235789999999999999999999999999 499999999999999987766 79999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCC--CCCccChhhhhhhhc
Q psy6337 159 SINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDP--SITEISGDMAFTLYD 236 (797)
Q Consensus 159 ~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~--~~~~l~g~~af~Lyd 236 (797)
+++.|.+||+.||++|.+| |++|+++|++.+++.+ .+++|||++||+|||
T Consensus 338 ~~~~I~~vi~~EE~~F~~T----------------------------L~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyD 389 (465)
T 1yfs_A 338 SREFVKGIVKGEEKRFIKT----------------------------LKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYD 389 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHhcCCCcCCHHHHHhhhh
Confidence 9999999999999999985 5667777777776532 124799999999999
Q ss_pred cCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6337 237 TYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA 277 (797)
Q Consensus 237 TyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~ 277 (797)
|||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 390 TyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 390 TYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred ccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999987754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.1e-53 Score=446.66 Aligned_cols=219 Identities=17% Similarity=0.291 Sum_probs=197.4
Q ss_pred ccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEE
Q psy6337 315 CLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEI 394 (797)
Q Consensus 315 ~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V 394 (797)
+++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .++|
T Consensus 15 ~~~a~V~~~~~~---------------------------~~~~~vvLd~T~FYpegGGQ~~D~G~i~---------~~~V 58 (241)
T 3kew_A 15 EFKGEIIEVKEI---------------------------DGKFHVLLDQTAFFPGGGGQMGDLGLID---------GIKV 58 (241)
T ss_dssp EEEECEEEEEEE---------------------------TTEEEEEESEECCCCCBTTBCCCCEEET---------TEEE
T ss_pred eeEEEEEEEEec---------------------------CCeEEEEEeCCcccCCCCCCCCCEEEEe---------eEEE
Confidence 589999988742 2447899999999999999999999993 4789
Q ss_pred EEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeec
Q psy6337 395 GELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSV 473 (797)
Q Consensus 395 ~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~ 473 (797)
.+|++.+|.++|++. +.+++|++|.+.|||+||+.+|++|||+|||++||+++| .+ +.|+++.++++||||+
T Consensus 59 ~~v~~~~g~i~H~~~----~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~- 131 (241)
T 3kew_A 59 LDVYEEEGKVYHVLE----KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV- 131 (241)
T ss_dssp EEEEEETTEEEEEES----SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE-
T ss_pred EEEEEeCCEEEEEEC----CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC-
Confidence 999999999999986 457899999999999999999999999999999999999 44 5799999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCc
Q psy6337 474 YGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 553 (797)
Q Consensus 474 ~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nT 553 (797)
+++|++++.+||+.||++|++|+||.+.+++++||++.+ ++.+ .++|++.+|||+||+ +|.+|||||||+||
T Consensus 132 --~~lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~-~~~~-~e~~~~~VRvv~ig~----~~~~~CgGtHV~~T 203 (241)
T 3kew_A 132 --GFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVK-TRRA-LPKTDEEIRIVEIVG----LDLNACCGVHPRNT 203 (241)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCC-CSSC-CCCCSSCCCEEEETT----TEEEECCSCCCSBS
T ss_pred --CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcC-hhhc-CCccCCcEEEEEECC----eEEEcCCCCCcCCH
Confidence 479999999999999999999999999999999997664 5554 577889999999999 99999999999999
Q ss_pred cccccEEEeeeecccCCeEEEEEEecHHHHHH
Q psy6337 554 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAA 585 (797)
Q Consensus 554 geIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~ 585 (797)
|+||.|+|+++++++.| +||+|+||.+|++.
T Consensus 204 geIg~fkI~~~~~~~~~-~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 204 RDLQVIKIRRWEKHKNA-TRIEYVAGNRAVSE 234 (241)
T ss_dssp GGGCCEEEEEEEEETTE-EEEEEEEGGGGC--
T ss_pred hhcCCEEEEEEeccCCc-EEEEEEECHHHHhc
Confidence 99999999999987654 69999999999753
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=1e-49 Score=410.46 Aligned_cols=183 Identities=25% Similarity=0.293 Sum_probs=169.7
Q ss_pred EEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEe-CCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHH
Q psy6337 358 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL-EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMR 436 (797)
Q Consensus 358 ~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~-~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~ 436 (797)
+|+||+|||||||||||+|+|+|. . ++|.+|++. +|.++|++.. .+.+++|++|.+.|||+||+.+|+
T Consensus 29 ~vvld~T~Fype~GGQ~~D~G~i~--------~-~~V~~v~~~~~~~i~H~~~~--~~~l~~g~~v~~~vD~~rR~~~~~ 97 (216)
T 2e1b_A 29 AILLDQTIFYPTGGGQPHDRGTIN--------G-VEVLDVYKDEEGNVWHVVKE--PEKFKVGDEVELKIDWDYRYKLMR 97 (216)
T ss_dssp CCCBSCCCSCCCCTTCCCCCEEET--------T-EEEEEEECCTTCCCEEEESC--GGGCCSSSCEEEEECHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCCCCCEEEEc--------c-EEEEEEEECcCCEEEEEEcc--CCCcCCCCEEEEEECHHHHHHHHH
Confidence 599999999999999999999994 2 799999997 9999999975 257899999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhcc--eEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccc
Q psy6337 437 AHTTSHLLNAALRRVLTC--TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLT 514 (797)
Q Consensus 437 ~HTAtHLL~~Al~~vl~~--v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~ 514 (797)
+|||+|||++||+++|+. +.+.|+++.++++||||+++ +++|++ +.+||+.||++|++++||.+.++++
T Consensus 98 ~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~-~~lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~------- 168 (216)
T 2e1b_A 98 IHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYP-ENLNKY-KEQIISLFNKYVDEGGEVKIWWEGD------- 168 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECS-SCGGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------
T ss_pred HhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCC-CCCCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------
Confidence 999999999999999944 56679999999999999974 579987 9999999999999999999988764
Q ss_pred cccccCCCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEE
Q psy6337 515 HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 577 (797)
Q Consensus 515 g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~v 577 (797)
+|||+||+ +|.+|||||||+|||+||.|+|++++++++|+|||+|.
T Consensus 169 -------------vRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 169 -------------RRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp -------------CEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred -------------EEEEEECC----EEEECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEE
Confidence 78999999 99999999999999999999999999999999999986
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=1.1e-25 Score=220.43 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=118.7
Q ss_pred HHHHHhhHHHHHHHHHHHhhc-ceEeccc-ccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccc
Q psy6337 433 GCMRAHTTSHLLNAALRRVLT-CTYQKSC-RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEL 510 (797)
Q Consensus 433 ~~~~~HTAtHLL~~Al~~vl~-~v~q~Gs-~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA 510 (797)
..|++|||+|||++|++++|+ ++.+.++ .+.++++|+||+. +.++|++++.+||+.||++|++++||...+++++||
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~-~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA 82 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 468999999999999999995 5655555 5666678888875 368999999999999999999999999999999999
Q ss_pred cccccccccCCCcCCC---cEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeec-ccCCeEEEEEEecH
Q psy6337 511 PSLTHLTVIPGEIYPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-YNHGVRSIKCLTGE 580 (797)
Q Consensus 511 ~~~~g~~~~~ge~y~~---~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~-~~~gv~RI~~vtG~ 580 (797)
.++++...+..+.+|+ .+|||+||+ +|.++||||||+|||+||.|+|++.++ .+++..||+|..+.
T Consensus 83 ~~~f~~~~~~~~~~~~~~~~vrv~~ig~----~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HHhhCccccccccCCCCCCeEEEEEECC----eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 8887654333333453 589999999 899999999999999999999999975 34555689887764
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.92 E-value=5.2e-25 Score=227.86 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=134.8
Q ss_pred EeCCEEEEEEEeecCcccCCCCeEEEEechhhhH-HHHHHhhHHHHHHHHHHHhhcceEecccccCCCceEEEeecCCCC
Q psy6337 399 SLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRL-GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGET 477 (797)
Q Consensus 399 ~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~-~~~~~HTAtHLL~~Al~~vl~~v~q~Gs~v~~d~~r~Df~~~~~~ 477 (797)
+.+|.+++.- ..+..|+.|. -|+++.+. ..|++|||+|||++|++++|+.+....+++.++++||||++. .+
T Consensus 39 kvNg~l~dL~-----~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~-~~ 111 (224)
T 1tke_A 39 RVNGELVDAC-----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLD-RT 111 (224)
T ss_dssp EETTEEEETT-----CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECS-SC
T ss_pred EECCEEeccc-----eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCC-CC
Confidence 3577777631 3467788777 47887764 899999999999999999995332222355689999999974 68
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccc------cccCCC-c-CCCcEEEEEeCCCCccccCCCcccCc
Q psy6337 478 LSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHL------TVIPGE-I-YPDDVILIDISDKENVISREPCCGTH 549 (797)
Q Consensus 478 lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~------~~~~ge-~-y~~~vrVV~Ig~~~~~~~~e~CgGTH 549 (797)
+|++++.+||+.||++|++++||...+++++||.+.+.- ..++.+ . +.+.+|||+||+ + .++|||||
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~----~-~dlC~G~H 186 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPH 186 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT----E-EEEESCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCC----E-EEECCCcC
Confidence 999999999999999999999999999999999876531 111222 2 445789999999 5 79999999
Q ss_pred cCCccccccEEEeeeec-------ccCCeEEEEEEe
Q psy6337 550 VFNTGHIESCTVIGYKS-------YNHGVRSIKCLT 578 (797)
Q Consensus 550 V~nTgeIg~fkIl~~~~-------~~~gv~RI~~vt 578 (797)
|+|||+||.|+|++.++ .+++++||++++
T Consensus 187 v~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 187 VPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp CSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred CCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 99999999999999876 367899999986
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.86 E-value=9.2e-22 Score=232.71 Aligned_cols=167 Identities=19% Similarity=0.318 Sum_probs=138.0
Q ss_pred EeCCEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCC
Q psy6337 399 SLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGET 477 (797)
Q Consensus 399 ~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~ 477 (797)
+.+|.+++.- ..+..+.+|...-..+.+-..+.+|||+|||++|++++| .+..+.|+.+ ++++||||++. .+
T Consensus 41 ~vng~~~dl~-----~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~-~~ 113 (645)
T 1nyr_A 41 KFNGQLVDLT-----KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDID-QN 113 (645)
T ss_dssp EETTEEECTT-----SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECS-SC
T ss_pred EECCEEEeCC-----cccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCC-CC
Confidence 3467666522 235556666665555667799999999999999999999 6778889877 89999999974 68
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcC--------C--CcEEEEEeCCCCccccCCCccc
Q psy6337 478 LSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIY--------P--DDVILIDISDKENVISREPCCG 547 (797)
Q Consensus 478 lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y--------~--~~vrVV~Ig~~~~~~~~e~CgG 547 (797)
+|++++.+||+.||++|.+++||...+++++||.+.++- ++| | +.+|||+||+ + .++|||
T Consensus 114 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~-----~~yk~~li~~~~~~~~vrv~~~g~----~-~dlC~G 183 (645)
T 1nyr_A 114 ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSN-----DEYKLELIDAIPEDENVTLYSQGD----F-TDLCRG 183 (645)
T ss_dssp CCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSS-----CHHHHHHHCCCSSSCCCEEEEETT----E-EEECCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhh-----CcchHHHhhcCCCCCeeEEEEECC----E-EEecCC
Confidence 999999999999999999999999999999999776531 222 2 3689999999 6 799999
Q ss_pred CccCCccccccEEEeeee-------cccCCeEEEEEEecHHH
Q psy6337 548 THVFNTGHIESCTVIGYK-------SYNHGVRSIKCLTGESS 582 (797)
Q Consensus 548 THV~nTgeIg~fkIl~~~-------~~~~gv~RI~~vtG~~A 582 (797)
|||+|||+||.|+|++++ +.++.++||+.++....
T Consensus 184 ~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~ 225 (645)
T 1nyr_A 184 VHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK 225 (645)
T ss_dssp CCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH
T ss_pred cccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCH
Confidence 999999999999999996 45778999999987543
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.84 E-value=4.2e-21 Score=226.57 Aligned_cols=165 Identities=17% Similarity=0.147 Sum_probs=131.7
Q ss_pred EeCCEEEEEEEeecCcccCCCCeEEEEechh-hhHHHHHHhhHHHHHHHHHHHhhcc-eEecccccCCCceEEEeecCCC
Q psy6337 399 SLEGKIVHFGNVVSSFKVTPGLTSRVEVDAR-MRLGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGE 476 (797)
Q Consensus 399 ~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~-rR~~~~~~HTAtHLL~~Al~~vl~~-v~q~Gs~v~~d~~r~Df~~~~~ 476 (797)
+.+|.+++.- .++..+.+|. -|+++ .+-..+.+|||+|||++|++++|+. -.+.|+++. +++||||++. .
T Consensus 39 ~vng~~~dl~-----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~-~ 110 (642)
T 1qf6_A 39 RVNGELVDAC-----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLD-R 110 (642)
T ss_dssp EETTEEEETT-----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECS-S
T ss_pred EECCEEeccc-----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCC-C
Confidence 3477776522 2344454454 34554 6678999999999999999999943 346788764 8899999974 6
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCc----------CC-CcEEEEEeCCCCccccCCCc
Q psy6337 477 TLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEI----------YP-DDVILIDISDKENVISREPC 545 (797)
Q Consensus 477 ~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~----------y~-~~vrVV~Ig~~~~~~~~e~C 545 (797)
++|++++.+||+.||++|.+++||...+++++||.+.+.. +|++ ++ +.+|||+||+ + .++|
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~---~~e~yk~~li~~~~~~~~~v~vy~~g~----~-~dlC 182 (642)
T 1qf6_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN---RGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMC 182 (642)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHH---HTCHHHHHHHHHHSCTTCCCEEEEETT----E-EECC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhh---hCCcchhhhhhcccCCCCceEEEEECC----E-EEec
Confidence 8999999999999999999999999999999999876532 2222 22 3689999999 5 7999
Q ss_pred ccCccCCccccccEEEeeeec-------ccCCeEEEEEEec
Q psy6337 546 CGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTG 579 (797)
Q Consensus 546 gGTHV~nTgeIg~fkIl~~~~-------~~~gv~RI~~vtG 579 (797)
|||||+|||+||.|+|+++++ .+..++||+.++-
T Consensus 183 ~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~ 223 (642)
T 1qf6_A 183 RGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223 (642)
T ss_dssp SSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred CCCccCCCCcceeEEEeeeccccccCccCCceeEeeecccc
Confidence 999999999999999999987 2567899999874
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.64 E-value=7e-16 Score=152.68 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=126.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHH
Q psy6337 578 TGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLR 657 (797)
Q Consensus 578 tG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~i~~~~k~~l~~~l~~l~k~i~~~~~ 657 (797)
.|.+|+++++..++++.+++ ..++..+ .++.+++.+ |.+++++++|++..+++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a---~~Lk~~~--------~~l~~~v~~----------------l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREAS---SILRVEP--------AKLPKTVER----------------FFEEWKDQRKEIERLKS 53 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHH---HTTTCCT--------TSHHHHHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH---HHhCCCh--------HHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 48899999999888876554 5554221 244555554 55566889999988888
Q ss_pred HHHHHHHHHHHHhh-ccCCCCEEEEEEcCCHHHHhccCccccC-CCcEEEEEeeCCeEEEEEecCCCCCCCCcCHHHHHH
Q psy6337 658 QFAKVRITEELIEK-CKEDTPYLVHYIRDDAVEIQALPPLSQI-SKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLT 735 (797)
Q Consensus 658 ~~~~~~~~~~~~~~-~~~~~~~iv~~~~~~~~~L~~~~~~~~~-~~~v~l~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k 735 (797)
+++...+.+++... .+++.++++..+..+++.|+.++..++. +.+++|++..++ +.++++++++ +++|++|++
T Consensus 54 ~~a~~~~~~l~~~~~~i~g~~~~~~~~~~d~~~lr~~~~~l~~~~~vv~l~~~~~~-~~~v~~~~~~----~~~a~~lvk 128 (171)
T 2zvf_A 54 VIADLWADILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEKGAVGCLMAKGEG-KVFVVTFSGQ----KYDARELLR 128 (171)
T ss_dssp HHHHHHHHHHHTTCEESSSCEEEEEECSCCHHHHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEESS----SSCHHHHHH
T ss_pred HHHHHHHHHHHhhcEEeCCEEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEEEcCCC-eEEEEEECCC----CCCHHHHHH
Confidence 88887777777664 6788888887665578888887665443 555566676677 8888888775 699999999
Q ss_pred HHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHHHHHHHHh
Q psy6337 736 PIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADE 785 (797)
Q Consensus 736 ~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~~ 785 (797)
++++.+||||||+ | .+|||+|+++ +.+++|++.+++|+..
T Consensus 129 ~~~~~~gGkGGGk----p-~~AQggg~~~-----~~l~~al~~~~~~~~~ 168 (171)
T 2zvf_A 129 EIGRVAKGSGGGR----K-DVAQGAVQQL-----LDREEMLDVIFRFLSE 168 (171)
T ss_dssp HHHHHHTEECCBC----S-SEEEEEESSC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCc----H-HHcccCCCCh-----hHHHHHHHHHHHHHHh
Confidence 9999999999886 3 4799999887 6899999999999854
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.33 E-value=2.2e-12 Score=118.88 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=84.0
Q ss_pred ccCCCCEEEEEEc-CCHHHHhccCccccC--CCcEEE-EEeeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCC
Q psy6337 672 CKEDTPYLVHYIR-DDAVEIQALPPLSQI--SKPVLV-LLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVS 747 (797)
Q Consensus 672 ~~~~~~~iv~~~~-~~~~~L~~~~~~~~~--~~~v~l-~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG 747 (797)
++++.++++..++ .+++.||++++.++. +..+++ ++..++|+.++|+++++++.+ ++|++|++++++.+||||||
T Consensus 5 ~i~g~~~~~~~~~~~d~~~Lr~~~~~l~~~~~~~vvvl~~~~~~kv~~v~~v~~~~~~~-~~A~~lvk~v~~~~gGkGGG 83 (111)
T 3g98_A 5 NVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGDKINFVIGVSKEISDK-VNAKEVIREVGKVLKGGGGG 83 (111)
T ss_dssp EETTEEEEEEEEESCCHHHHHHHHHHHTTSSSSEEEEEEEEETTEEEEEEEECGGGTTT-SCHHHHHHHHHHHTTBCCEE
T ss_pred EECCEEEEEEEeCCCCHHHHHHHHHHHHhhcCCcEEEEEEecCCcEEEEEEECHHHhcc-CCHHHHHHHHHHHcCCCcCC
Confidence 4678889988888 578889887765544 344544 466788999999999988666 99999999999999999998
Q ss_pred CCCCccccccccccccccccchHHHHHHHHHHHHHHH
Q psy6337 748 SKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSAD 784 (797)
Q Consensus 748 ~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~ 784 (797)
+ | .+||+.|+++ +.+++|++.|++|+.
T Consensus 84 k----p-~~AQggg~~~-----~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 84 R----A-DLAQGGGKAP-----DKFPEAVKLLKEILS 110 (111)
T ss_dssp C----S-SEEEEEESCG-----GGHHHHHHHHHHHHH
T ss_pred c----H-HHeeecCCCH-----HHHHHHHHHHHHHhc
Confidence 6 3 4799999887 789999999999874
No 13
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=82.43 E-value=0.46 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCCCcccCCchHHHHHHHHhCCCCcccc
Q psy6337 27 LSKNYIDTGLGFERLVTILQNKTSTYDT 54 (797)
Q Consensus 27 Lp~k~IDTGmGLERl~~vlQg~~snYdt 54 (797)
+..-.+--=+||||||..|||+.|.||-
T Consensus 162 c~pv~~EITYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 162 LKDIPLEITYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp CSSCCEEEEEEHHHHHHHHHTCSSGGGC
T ss_pred cCccceeecccHHHHHHHHhCCCceecc
Confidence 3444556679999999999999999997
No 14
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=81.33 E-value=0.53 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCcccCCchHHHHHHHHhCCCCcccc
Q psy6337 29 KNYIDTGLGFERLVTILQNKTSTYDT 54 (797)
Q Consensus 29 ~k~IDTGmGLERl~~vlQg~~snYdt 54 (797)
.-.+--=+||||||..|||+.|.||-
T Consensus 176 pv~~EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 176 LVSAEITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp SCCEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred ccceeeehhHHHHHHHHhCCCeeeec
Confidence 33455669999999999999999986
No 15
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=41.93 E-value=11 Score=26.18 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=5.7
Q ss_pred CCccCCCCCCccc
Q psy6337 742 EGKGVSSKGSDVQ 754 (797)
Q Consensus 742 gGkGGG~~g~~~~ 754 (797)
.|+|||.+|+.+.
T Consensus 12 eggggggggsaae 24 (37)
T 2i9o_A 12 EGGGGGGGGSAAE 24 (37)
T ss_dssp CCSCCCCSCSSHH
T ss_pred ecCCCCCcchHHH
Confidence 3444443445443
No 16
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=38.41 E-value=13 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCCccCCC
Q psy6337 732 AWLTPIMDRAEGKGVSS 748 (797)
Q Consensus 732 ~~~k~v~~~~gGkGGG~ 748 (797)
++..+.++.+.|+|||.
T Consensus 17 klaeeaakllegggggg 33 (62)
T 2i7u_A 17 KLAEEAAKLLEGGGGGG 33 (62)
T ss_dssp HHHHHHHHHHHCSSCSS
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 34456667776666553
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=35.49 E-value=13 Score=39.06 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=26.3
Q ss_pred cCCCCcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 26 PLSKNYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 26 ~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
=+|.+|.=-|||+|||+.++.|.++.=|+=+|
T Consensus 253 G~p~P~~G~glGieRL~mll~g~~~Irdvi~F 284 (294)
T 1nnh_A 253 GKLKPSAGAGIGVERLVRFIVGAKHIAEVQPF 284 (294)
T ss_dssp TCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred CCCCCceEEEEcHHHHHHHHhCCCCHHHEEec
Confidence 36778999999999999999999886665443
No 18
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=35.18 E-value=93 Score=29.85 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=73.2
Q ss_pred cCCCCeEE-EEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHH
Q psy6337 416 VTPGLTSR-VEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 493 (797)
Q Consensus 416 l~~G~~V~-~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~ 493 (797)
+..|+.|. +.+|..-|..-...|-|++||.. .=| .-+.-.| .+|..+.+=. | .+..+-++..++-+.+-..
T Consensus 65 i~~~~kveniVfdYnG~~pErF~hraqlLlRe---eGfinftaY~t--KtpghlhlyI-h-kghttL~E~~ql~~~lS~k 137 (180)
T 2atz_A 65 ILRNDKVENIVFDYNGRNPERFYHKAQLLLRE---EGFMNFTAYNT--KTPGHLHLYV-H-KGHTELGEGERLVKTLSMK 137 (180)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHHHH---TTCCCEEEEEC--SSTTCEEEEE-C-CCSEEHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEeCCCCHHHHHHHHHHHHHH---hCcceeEeecc--CCCCeEEEEE-e-cCCccHHHHHHHHHHHHHH
Confidence 45677676 67899999999999999998752 112 2221112 3566666633 2 3567788888888888889
Q ss_pred HHccCCeEEEEcCcccccccccccccCCCcC
Q psy6337 494 IADQVQVDRRHMRASELPSLTHLTVIPGEIY 524 (797)
Q Consensus 494 I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y 524 (797)
.++.+|.+++..|-.+.-..+.+-.+|-+.|
T Consensus 138 La~klpkeWr~fPs~dlP~~fNIltLPYevy 168 (180)
T 2atz_A 138 LAQGLPKEWKVFPSNEWPKEFNILALPYEVF 168 (180)
T ss_dssp HHTTSCCCEEEESCTTSCGGGCEEECCCEEE
T ss_pred HHhhCccceeeCCCccCChhcceeeccHHHH
Confidence 9999999999988777767777767776555
No 19
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=29.80 E-value=19 Score=38.95 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred cccCCchHHHHHHHHhCCCCcccccch
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
|==-|+|||||+++|-|.+|.=|.=.|
T Consensus 314 hgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 314 CSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp EEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 333489999999999999987776444
No 20
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=26.47 E-value=22 Score=40.55 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.5
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+++|.|.+|.=|+=+|
T Consensus 475 P~gG~GlGiDRLvMlltg~~~IRdVi~F 502 (521)
T 3bju_A 475 PTAGWGMGIDRVAMFLTDSNNIKEVLLF 502 (521)
T ss_dssp SEEEEEEEHHHHHHHHTTCSSGGGSCSS
T ss_pred CceeEEEcHHHHHHHHhCCCcHHhEecC
Confidence 4445699999999999999997777444
No 21
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=26.35 E-value=23 Score=39.55 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=21.5
Q ss_pred cccCCchHHHHHHHHhCCCCcccccch
Q psy6337 31 YIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 31 ~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
|==-|||+|||++.+-|.+|.=|+=+|
T Consensus 403 ~~G~GlGidRLvm~l~g~~~Irdvi~F 429 (438)
T 3nem_A 403 HGGFGLGAERLIKQMLDLPNIREVILF 429 (438)
T ss_dssp EEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred ceEEEEhHHHHHHHHhCCCcHHHcccC
Confidence 445589999999999999887666444
No 22
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=26.18 E-value=23 Score=39.39 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCCcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 27 LSKNYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 27 Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+| +|-=-|||+|||+++|.|.+|.=|+=+|
T Consensus 391 ~P-P~~G~glGiDRLvmll~g~~~Irdvi~F 420 (429)
T 1wyd_A 391 MP-PHAGFGMGLARLMVMLTGIQSVKEIVPF 420 (429)
T ss_dssp CC-CEEEEEEEHHHHHHHHHCCCCGGGTSSS
T ss_pred CC-CceEEEEcHHHHHHHHcCCCcHHhEEec
Confidence 44 7778899999999999999987666444
No 23
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=25.50 E-value=24 Score=39.11 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=24.5
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchHH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFLP 59 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~p 59 (797)
+|==-|+|+|||+++|.|.+|.=|+=+|+.
T Consensus 386 PhgG~glGiDRLvm~l~g~~~Irdvi~FPr 415 (422)
T 1n9w_A 386 PHGGFAIGAERLTQKLLGLPNVRYARAFPR 415 (422)
T ss_dssp SEEEEEEEHHHHHHHHTTCSSGGGGCSCC-
T ss_pred CceEEEEcHHHHHHHHhCCCcHHhEEecCC
Confidence 566679999999999999999888766644
No 24
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=25.30 E-value=24 Score=39.51 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred ccCCchHHHHHHHHhCCCCcccccch
Q psy6337 32 IDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 32 IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
==-|||+|||++.+-|..+.=|+=+|
T Consensus 422 gG~GlGidRLvm~ltg~~~Irdvi~F 447 (456)
T 3m4p_A 422 GGYGLGVERLVMWLLGEDHIRKVCLY 447 (456)
T ss_dssp EEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred cEEEEcHHHHHHHHcCCccHHHeecc
Confidence 34589999999999999887666444
No 25
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=25.21 E-value=25 Score=40.24 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=20.7
Q ss_pred CCchHHHHHHHHhCCCCcccccch
Q psy6337 34 TGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 34 TGmGLERl~~vlQg~~snYdtDlF 57 (797)
-|||+|||+.+|.|.+|.=|+=+|
T Consensus 499 ~GlGiDRLvMlltg~~~IRdVi~F 522 (529)
T 4ex5_A 499 CGIGIDRLVMLLTDSPTIRDVLLF 522 (529)
T ss_dssp EEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred EEEeHHHHHHHHcCCCcHHHeecC
Confidence 489999999999999998777555
No 26
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=24.86 E-value=25 Score=39.99 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=22.5
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|||+|||+++|.|.+|.=|+=+|
T Consensus 470 PhgG~glGiDRLvmlltg~~~IRdVi~F 497 (504)
T 1e1o_A 470 PTAGLGIGIDRMIMLFTNSHTIRDVILF 497 (504)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred CceeEEEcHHHHHHHHhCCCcHHhEecc
Confidence 4444699999999999999997776444
No 27
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=24.82 E-value=25 Score=39.86 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=22.4
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|+|+|||+++|.|.+|.=|+=+|
T Consensus 460 PhgG~glGiDRLvmlltg~~~IRdVi~F 487 (493)
T 3a74_A 460 PTGGLGIGVDRLVMLLTNSPSIRDVLLF 487 (493)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred CceeEEEcHHHHHHHHhCCCcHHhEecc
Confidence 3444589999999999999997776544
No 28
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=24.60 E-value=25 Score=40.29 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=20.5
Q ss_pred cCCchHHHHHHHHhCCCCcccccch
Q psy6337 33 DTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 33 DTGmGLERl~~vlQg~~snYdtDlF 57 (797)
=-|||+|||++++-|..|.=|+=+|
T Consensus 515 G~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 515 GCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp EEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred EEEEcHHHHHHHHhCCccHHHhhcC
Confidence 4589999999999999887666444
No 29
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=23.98 E-value=27 Score=38.87 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=22.6
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|-=-|+|+|||+++|.|.+|.=|.=+|
T Consensus 398 P~~G~glGiDRLvmll~g~~~Irdvi~F 425 (434)
T 1x54_A 398 PHSGFGLGVERLVAWVLKLDHIRWAALF 425 (434)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGSSS
T ss_pred CceEEEEcHHHHHHHHcCCCcHHhEEEc
Confidence 6777799999999999999886665333
No 30
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=23.83 E-value=27 Score=38.85 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=21.8
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|+|+|||+++|.|.+|.=|+=+|
T Consensus 399 PhgG~glGiDRLvmll~g~~~Irdvi~F 426 (435)
T 2xgt_A 399 PHGGYGLGLERFICWLTNTNHIRDVCLY 426 (435)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred CCceEEEhHHHHHHHHcCCCcHHhEecc
Confidence 4444589999999999999987666444
No 31
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=23.35 E-value=28 Score=39.34 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=21.9
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccch
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLF 57 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF 57 (797)
+|==-|+|||||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 4445589999999999999987666444
No 32
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=21.20 E-value=32 Score=39.76 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.1
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|+|||||+++|-|.+|.=|.=.|+
T Consensus 527 PhgG~glGlDRLvmlltg~~sIRdVi~FP 555 (585)
T 1c0a_A 527 PHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555 (585)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSSC
T ss_pred CceeEEEcHHHHHHHHcCCCcHHheecCC
Confidence 45556999999999999999977764544
No 33
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=20.70 E-value=34 Score=39.56 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.3
Q ss_pred CcccCCchHHHHHHHHhCCCCcccccchH
Q psy6337 30 NYIDTGLGFERLVTILQNKTSTYDTDLFL 58 (797)
Q Consensus 30 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 58 (797)
+|==-|+|||||+++|.|.+|.=|.=.|+
T Consensus 521 PhgG~glGlDRLvMll~g~~sIRdVi~FP 549 (580)
T 1l0w_A 521 PHGGIAWGLDRLLALMTGSPSIREVIAFP 549 (580)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred CCceEEEcHHHHHHHHcCCCcHHeEecCC
Confidence 56666999999999999999877664443
Done!