RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6337
(797 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 292 bits (750), Expect = 5e-86
Identities = 218/796 (27%), Positives = 354/796 (44%), Gaps = 122/796 (15%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPL 60
D IEIWN+VFI R + ++ PL ++DTG+G ERL +ILQNK S YDTDLF+P+
Sbjct: 210 DDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPI 269
Query: 61 LETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRN 117
+ I++ +GA+PY + +D +YR+++D+ R ++ A+AD + P + LR
Sbjct: 270 FDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRR 329
Query: 118 VVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIF 174
++R A+ + ++G LV+ + E+ GDV+PE++ + +I I+ EE F
Sbjct: 330 LLRRAVRYGRLLLGAEEGFFPALVEVV----VELSGDVFPEVKKNEKRITEIIAEEELSF 385
Query: 175 DNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQL--ARDPSITEISGDMAF 232
KT L G++ K L A+ +SG AF
Sbjct: 386 --------------GKT--------------LEKGIEKFKKALAAAKANGGPVLSGKDAF 417
Query: 233 TLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK-AKAASNVPDIDL------ 285
LYDTYG ++ + +A + +T+ E FE + E +ERS+ A + I+L
Sbjct: 418 LLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATS 477
Query: 286 -MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGA 344
+ + TDD KYD+ D + + I+ G G
Sbjct: 478 WLQKQGVAATDDFLKYDWLSDHEAV----------VKAILTG----------------GG 511
Query: 345 SIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKI 404
++S+ VG++ DKT+ YA +GGQI D GV + VE+ ++ G +
Sbjct: 512 FVESVSEGDE--VGIVLDKTSFYAESGGQIGDTGVLEGSG----GAVVEVSDVQKAGGFV 565
Query: 405 VHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVF 463
+H G V+ V+ G +VD R HT +HLLN+AL+ VL QK V
Sbjct: 566 LHIG-TVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVA 624
Query: 464 SDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEI 523
++ DFS +G+ ++ + + VE +N+ I D + V+ + M ++ + L + GE
Sbjct: 625 FEKLRFDFS-HGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEK 683
Query: 524 YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK 583
YPD V ++ + S E C GTHV NT E+ ++ + G+R I +TG
Sbjct: 684 YPDPVRVVSVGGV---YSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGG--- 737
Query: 584 AAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLE------DDLPYAV 637
AAVE + ++L + + + + L ++ +K+ + +++ V
Sbjct: 738 AAVEAINAADSLERELDS-----ALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARV 792
Query: 638 HKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKED-TPYLVHYIRDDAVEIQALPP- 695
L A ++ LR V EL K LV + D V+ AL
Sbjct: 793 SALQKELRA--AQKEAAALRAKLAVAKATELASKALSAGKSVLVARL-DVGVDAAALKEA 849
Query: 696 ----LSQISKPVLVLLYSLGELKAR----AYVPPQCTTPGFNAQAWLTPIMDRAEGKGVS 747
++++ P V+L S E K + A VPP G A WL I + G G
Sbjct: 850 AEKVIAKLGDPAAVVL-SSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAI-AKLCGGGGG 907
Query: 748 SK-------GSDVQHL 756
K G D + L
Sbjct: 908 GKPGFAQGQGRDAEKL 923
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 282 bits (724), Expect = 9e-83
Identities = 189/683 (27%), Positives = 296/683 (43%), Gaps = 137/683 (20%)
Query: 1 DRNDLIEIWNIVFISHKRVSAD-TIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLP 59
D + +EIWN+VF+ + R D PL K IDTG+G ER+ +LQ + YDTDLF P
Sbjct: 193 DGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRP 252
Query: 60 LLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LR 116
+++ IEK++G K YG + D D S+R+++D+ R + +AD + P + LR
Sbjct: 253 IIKAIEKLTG-KKYG-----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLR 306
Query: 117 NVVRDA------LLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEE 170
++R A L I E KLV + + +GD YPE+++ + I+ +L E
Sbjct: 307 RIIRRALRHGKLLGIKEPFL----YKLVDTV----IDEMGDAYPELKEKEDFIKEVLKLE 358
Query: 171 SRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDM 230
F KT L G+K L K+LA+ + G+
Sbjct: 359 EERFA--------------KT--------------LERGLKLLEKELAKLKKSKTLDGED 390
Query: 231 AFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASN--VPDIDLMDL 288
AF LYDTYG + +E+A + L + FE + +ER++A A S + + ++L
Sbjct: 391 AFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASAGSGEGAKESEDLEL 450
Query: 289 KHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDS 348
+ YD L+ +V+ G +
Sbjct: 451 IDKLPETEFLGYDD-------------LEMEFKVLVLFV--------------DGKEVSE 483
Query: 349 IQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNT-------TQENGKVEIGELASLE 401
+ +V + D+T YA +GGQ+ D G + Q+ G
Sbjct: 484 LNEGQEVYV--VLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGN---------- 531
Query: 402 GKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSC 460
G IVH G V S ++ G EVD R MR HT +HLL+AALR+VL +Q
Sbjct: 532 GVIVHKGKVESG-ELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGS 590
Query: 461 RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHM----------RASEL 510
V ++ DFS + + L+ + + +E+ +N++I + + V M A
Sbjct: 591 LVDPEKLRFDFS-HYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALF- 648
Query: 511 PSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 570
GE Y D+V +++I D S E C GTHV NTG I +I + G
Sbjct: 649 ----------GEKYGDEVRVVEIGD----FSVELCGGTHVSNTGDIGLFKIISEEGIAAG 694
Query: 571 VRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLE 630
VR I+ +TGE AA+E ++ +K++A+ + E + + E+K L + LE
Sbjct: 695 VRRIEAVTGE---AALEYLQEQEDLLKEIASLLKVPPEL--LPKVERLLEELKELEKELE 749
Query: 631 DDLPYAVHKQNDHLLAELSKNVK 653
K LA+L N K
Sbjct: 750 R----LKKKLAAAELADLLSNAK 768
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 270 bits (692), Expect = 3e-78
Identities = 214/775 (27%), Positives = 319/775 (41%), Gaps = 171/775 (22%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
IEIWN+VF+ R + PL K IDTG+G ER+ +LQ S Y+TDLF PL++ IE
Sbjct: 195 IEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIE 254
Query: 66 KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK-------LRNV 118
+++G K D S+R+++D+ R + +AD + P + LR
Sbjct: 255 ELTGVKYED-----------DVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRA 303
Query: 119 VRDA-LL-ISEDVFKVKQGKLVKELSYNIAEILGDVYPEI---QDSINKIQLILGEESRI 173
VR LL I E KLV + + +GD YPE+ QD I K+ + EE R
Sbjct: 304 VRHGRLLGIKEPFL----YKLVPVV----IDEMGDAYPELKEKQDLIEKV--LKAEEERF 353
Query: 174 FDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFT 233
KT LE+ G+K L + LA+ + +SG+ AF
Sbjct: 354 L---------------KT---LER-----------GLKLLEEALAKLKAGKVLSGEDAFK 384
Query: 234 LYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPV 293
LYDTYG ++ E+A + LT+ E FE + E +ER++A L +L
Sbjct: 385 LYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDYNALEELL---- 440
Query: 294 TDDKYKYDYH-YDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLE 352
D ++ YDT + ++ + G S+DS +
Sbjct: 441 --DDLATEFVGYDTLEA-------EAKVLALF----------------VDGESVDSAKAG 475
Query: 353 HNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGE-LASLEGKIVHFGNVV 411
V + DKT YA +GGQ+ D G + + G E+ + G IVH G V
Sbjct: 476 EEVEV--VLDKTPFYAESGGQVGDTG--VIED----GGVFEVTDTQKPPNGLIVHRGKVE 527
Query: 412 SSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL----TCTYQKSCRVFSDEC 467
++ G EVD R R H+ +HLL+AALR VL T Q V D
Sbjct: 528 EG-ELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVT---QAGSLVAPDRL 583
Query: 468 ALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASE--------LPSLTHLTVI 519
DFS + E L+ + + +E +N+ I + + V+ M E L
Sbjct: 584 RFDFS-HFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGAMAL--------- 633
Query: 520 PGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTG 579
GE Y D+V ++ I D S E C GTHV NTG I ++ GVR I+ +TG
Sbjct: 634 FGEKYGDEVRVVSIGD----FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTG 689
Query: 580 ESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHK 639
E AA+E + A +K+LAA + + E + E+K L K
Sbjct: 690 E---AALEYLNEQEALLKELAALLKAKPSEL-PERVEALLEELKELE------------K 733
Query: 640 QNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKE--DTPYLVHYIRDDAVEIQALPPL- 696
+ + L A+L+ +L+ + KE L + + V+ +AL L
Sbjct: 734 ELEQLKAKLAAA------------AAGDLLAQAKEVNGVKVLAAQV--EGVDAKALRTLA 779
Query: 697 ----SQISKPVLVLLYSLGELKAR--AYVPPQCTTPGFNAQAWLTPIMDRAEGKG 745
++ V+VL K V T G A + + GKG
Sbjct: 780 DDLKDKLGSGVVVLATVEDG-KVSLVVAVTKDLTDKGLKAGDLVKELAKIVGGKG 833
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 266 bits (681), Expect = 5e-77
Identities = 198/764 (25%), Positives = 320/764 (41%), Gaps = 126/764 (16%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPL 60
+ + +E+WN+VF+ R PL K IDTG+G ER V +LQ + YDTD+FLPL
Sbjct: 184 ENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLPL 243
Query: 61 LETIEKVSGAKPYGRTFTTSNRTDLDT--SYRMLSDYSRMITVALADNMFPDATAK---L 115
+E IE+++G K + ++ S R+++D++R + LAD + P + L
Sbjct: 244 IEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVL 303
Query: 116 RNVVRDALL------ISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGE 169
R ++R AL + E KLV + E+LGD YPE+++ ++ IL
Sbjct: 304 RRLIRRALRHGKKLGLKEAFLY----KLVPT----LIEVLGDYYPELKEKQEFVEQILEL 355
Query: 170 ESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGD 229
E E+F E GL L K L K E+ G+
Sbjct: 356 EE------------------------ERFAKTLERGLRLFEKLLKKL-----GKKELDGE 386
Query: 230 MAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLK 289
AF LYDTYG + +E+A + LT+ FE + E +ERSKA + + ++ + L
Sbjct: 387 DAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFELQEIALA 446
Query: 290 HFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSI 349
+ + Y+ D VIG +F G +D
Sbjct: 447 NVYPATEFLGYE---------------DLEFEAKVIG--LF----------EDGKPVDEA 479
Query: 350 QLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIV-HFG 408
E V +I D+T YA +GGQI D G YL +GK + +V HFG
Sbjct: 480 --EAGQSVYVILDQTPFYAESGGQIGDTG--YLIA---NDGKFRV-VDVQKPNGVVFHFG 531
Query: 409 NVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDEC 467
V + G +D + RL MR H+ +HLL+AAL++VL +Q V +
Sbjct: 532 EVEGG-SLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKL 590
Query: 468 ALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDD 527
DFS Y L+ + + +E +N+ I + + M E + + GE Y +
Sbjct: 591 RFDFSHY-RALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALF-GEKYGEK 648
Query: 528 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 587
V ++ + D +S E C GTHV NTG I ++ GVR I+ +TG ++ +
Sbjct: 649 VRVVSVGD----VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLN 704
Query: 588 NGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAE 647
+ +K+LA + + + + + E K L+ K+ + L +
Sbjct: 705 EQEDK---LKELADILKVTPNELP-KKIERFFEEWKALQ------------KELESLKLK 748
Query: 648 LSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPL-----SQISKP 702
++ +L+ A E + LV + DA ++++L + S++
Sbjct: 749 IADQKIDELKDKA-----ETI-----NGVKVLVEVV--DAKDMKSLKTMADRLKSKLGSA 796
Query: 703 VLVLLYSL-GELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKG 745
+ VL G++K V G A + I GKG
Sbjct: 797 IYVLASFANGKVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKG 840
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 208 bits (531), Expect = 2e-58
Identities = 127/427 (29%), Positives = 197/427 (46%), Gaps = 75/427 (17%)
Query: 4 DLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLET 63
+EIWN+VF+ R S T+ PL K IDTG+G ERLV +LQN S YDTDLF+PL+E
Sbjct: 194 RFLEIWNLVFMQFNRESDGTLKPLPKKSIDTGMGLERLVAVLQNVRSNYDTDLFIPLIEL 253
Query: 64 IEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVR 120
IE++SGAK Y + T D +YR+++D++R +T A+AD + P + LR ++R
Sbjct: 254 IEEISGAKYYTKDET-------DEAYRVIADHTRALTFAIADGVVPSNEGRGYVLRRILR 306
Query: 121 DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKA 180
A+ ++ +K+ L +L + E +GD YPE+++ + IQ IL E F
Sbjct: 307 RAVRHAKK-LGLKEPFL-YKLVPTVIEEMGDAYPELKEKEDTIQEILELEEERFA----- 359
Query: 181 AVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGL 240
KT L G++ L + + + G+ AF LYDTYG
Sbjct: 360 ---------KT--------------LERGLRLLERLIKSLKKSKTLPGEDAFKLYDTYGF 396
Query: 241 SKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKY 300
++ QE+A + LT+ FE+ + E +ERSK ++D+ L P T + Y
Sbjct: 397 PVDLTQEIAEERGLTVDMPGFEKAMVEQRERSKQAVKEKGEELDVSALVELPATSEFLGY 456
Query: 301 DYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLI 360
D + ++ + + + + V I
Sbjct: 457 DDLEA-----------EAKILALFKDGE----------------FVAEVLEGQEGGV--I 487
Query: 361 FDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGL 420
D+T YA +GGQI D G Y+ E G+ + ++ G +VH G + S + G
Sbjct: 488 LDRTPFYAESGGQIGDTG--YIIG---EGGEFRVTDVQKYGGVVVHKGK-LESGSLKVGD 541
Query: 421 TSRVEVD 427
T VD
Sbjct: 542 TVIAVVD 548
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 130 bits (329), Expect = 1e-31
Identities = 82/277 (29%), Positives = 130/277 (46%), Gaps = 44/277 (15%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
EIWN VF+ + + L + +DTG+G ER + LQ K+S YDT+ F P+++ IE
Sbjct: 200 FEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIE 259
Query: 66 KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADN--MFPDATAK---LRNVVR 120
K+SG K YG+ N D D S R+++D+ R L D + P + LR ++R
Sbjct: 260 KISG-KIYGQ-----NEED-DRSIRIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIR 312
Query: 121 DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILG-EESRIFDNLRK 179
++ ++ + + + +L ++ EI G YPE+ + + I+ L EE + F LRK
Sbjct: 313 RSIRHAKKL--GIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRK 370
Query: 180 AAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYG 239
G + K + S I GD+AF LYDTYG
Sbjct: 371 -----------------------------GEQEFIKLIPNLGSSKIIPGDIAFKLYDTYG 401
Query: 240 LSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 276
I +ELA+ T+ E F++ + ++ SK A
Sbjct: 402 FPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGA 438
Score = 62.9 bits (153), Expect = 4e-10
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 436 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 494
+ HT +HLL+ ALR VL QK + ++ DFS + E ++ D + VE +N I
Sbjct: 455 KLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFS-HPEKMTDDEIKKVEDIVNLQI 513
Query: 495 ADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTG 554
+ + V + M E + + GE Y D V + +I S+E C G HV NTG
Sbjct: 514 KNDLSVKKEVMSLEEAREKGAMALF-GEKYEDIVKVYEIDG----FSKEVCGGPHVENTG 568
Query: 555 HIESCTVIGYKSYNHGVRSIK 575
+ + + +S + GVR I+
Sbjct: 569 ELGTFKIQKEQSSSSGVRRIR 589
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 116 bits (292), Expect = 1e-26
Identities = 136/685 (19%), Positives = 254/685 (37%), Gaps = 161/685 (23%)
Query: 6 IEIWNIVFISHKRVSADTIVPLSKNY-------IDTGLGFERLVTILQNKTSTYDTDLFL 58
+E+ +VF+ ++ I Y +DTG G ER V Q + YD +F
Sbjct: 204 LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFP 262
Query: 59 PLLETIEKVSGAK------------------PYG------RTFTTSNRTDLDTSYRM--- 91
+++ +++ +G + +++ +D
Sbjct: 263 EIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKII 322
Query: 92 --------LSDYSRMITVALADNMFPDAT-----AKLRNVVRDALLISEDV-FKVKQGKL 137
++D++R + L D + P A+L V+R L + ++ + L
Sbjct: 323 APVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARL--VIRRTLRLMRELGLDIPLSDL 380
Query: 138 VKELSYNIAEILGDVYPEIQDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELE 196
V+ E L +YPE++++ + I IL EE + + L +
Sbjct: 381 VEM----QLEELKKIYPELKENKDYILDILDLEEEKYRETLERG---------------- 420
Query: 197 QFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAK--KL 254
+V ++L + + EI D LYD++G+ I++E+AA ++
Sbjct: 421 -------RRIV-------ERLLK--TKKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEV 464
Query: 255 TLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFP 314
+ F + E E+ + + + K P T + Y+ +
Sbjct: 465 EIPDN-FYSIVAERHEKEEKEEELPKDYEER--AKDLPETRRLF-YEDPTMREFE----- 515
Query: 315 CLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQI 374
V+G D + ++ D+T Y GGQ
Sbjct: 516 -------AKVLG----VFDNY-----------------------VVLDQTAFYPEGGGQP 541
Query: 375 DDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGC 434
D G G+ + ++ + G IVH V + G + E+D RL
Sbjct: 542 ADTGY-----LITNGGEYRVVDVQKVGGVIVH---KVDGEGIKEGDEVKGEIDWERRLRL 593
Query: 435 MRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 493
MR HT +H+L AA RRVL +Q + +D+ LD + Y + +S + + +E+ N +
Sbjct: 594 MRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHY-KRISEEEIKEIERLANRI 652
Query: 494 IADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVI-LIDISDKENVISREPCCGTHVFN 552
+ + V + M +E + G + P I +++I D + C GTH N
Sbjct: 653 VMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIED----WDVQACGGTHCRN 708
Query: 553 TGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAV--------ENGKQLSAAVKQLAATIN 604
TG I ++ + GV I+ GE++ + E+ L +QL T+
Sbjct: 709 TGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESSDILKVPPEQLPETV- 767
Query: 605 QNSEQTDEETLNQQNHEIKTLRELL 629
++ EE +Q EI+ L++ L
Sbjct: 768 ---KRFFEE-WKEQRKEIERLKKKL 788
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 108 bits (271), Expect = 5e-24
Identities = 145/690 (21%), Positives = 265/690 (38%), Gaps = 165/690 (23%)
Query: 7 EIWNIVFISHKRVSADTIVPLSKNYI-DTGLGFERLVTILQNKTST-YDTDLFLPLLETI 64
E+ +VF+ +K+ + V + I DTG G ER+ Q T T YD +F L++ +
Sbjct: 209 ELATLVFMQYKKDG-NRYVEM-PLKIVDTGYGLERIAWASQ-GTPTAYDA-IFGELVDKL 264
Query: 65 EKVSGAKPYGRTF------------------------TTSNRTDLDTSYRM--------- 91
++ +G + + + +D
Sbjct: 265 KENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAI 324
Query: 92 --LSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNI- 145
++D++R + L D + P + R V+R L +L+ EL ++
Sbjct: 325 YAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTL------------RLLDELGLDVP 372
Query: 146 --------AEILGDVYPEIQDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELE 196
+ L + YPE++++ + I I+ EE + + L +
Sbjct: 373 LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERG---------------- 416
Query: 197 QFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTL 256
+V ++LA+ EI D LYD++G+ I++E+A K + +
Sbjct: 417 -------KRIV-------ERLAK--KKEEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEV 460
Query: 257 -CHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPC 315
+ F + E E+++ + V + + LK P T + ++ D + +
Sbjct: 461 EVPDNFYSLVAERHEKAEEEEEEPVVEEER--LKDLPET----EKLFYEDPYMREFEAKV 514
Query: 316 LDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQID 375
L VI + V + D+T Y GGQ
Sbjct: 515 LG------VIDNYV------------------------------VLDQTAFYPEGGGQPA 538
Query: 376 DIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 435
D GV + ++ ++ + G IVH V+ G R E+D R M
Sbjct: 539 DTGV-----LIVDGKGYKVVDVQKVGGVIVH---VLEGEPPKKGDEVRGEIDWERRYRLM 590
Query: 436 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 494
R HT +H++ AA R+VL +Q + D+ LD + Y + ++ + V +E+ N+++
Sbjct: 591 RHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHY-KRITREEVKEIERLANEIV 649
Query: 495 ADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVI-LIDISDKENVISREPCCGTHVFNT 553
+ V M +E + G + P I +++I D +V E C GTHV NT
Sbjct: 650 MENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDW-DV---EACGGTHVSNT 705
Query: 554 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDE- 612
G I ++ + GV ++ G+ AAVE ++L +K+ A + EQ +
Sbjct: 706 GEIGPIKILKTERIQDGVERLEFAAGD---AAVEYIQELEDLLKEAAEILGVPPEQLPKT 762
Query: 613 -----ETLNQQNHEIKTLRELLEDDLPYAV 637
E +Q EI+ LR+ L + L +
Sbjct: 763 VERFFEEWKEQKKEIEKLRKELAELLASEL 792
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 76.3 bits (188), Expect = 2e-15
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 358 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEG-KIVHFGNVVSSFKV 416
++ D+T Y T GGQ D G G + E + +G +IVH + KV
Sbjct: 26 EIVLDRTIFYPTGGGQPGDTGTLIW------AGGEYVVEDVTKDGEEIVHVLAEHAKLKV 79
Query: 417 TPGLTSRVEVD--ARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVY 474
G ++++D R R MR HT HLL+A L +V + D +DF
Sbjct: 80 --GDKVKLKIDWERRYRH--MRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGE 134
Query: 475 GETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPD---DVILI 531
++ VE N+++ + + V + E L L + ++ PD + ++
Sbjct: 135 DTEDEIE---EVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIV 191
Query: 532 DISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKA 584
+I D I +PC GTHV NTG I ++ + G R + GE + A
Sbjct: 192 EIGD----IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERASA 240
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 66.2 bits (162), Expect = 5e-12
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNK 48
D + +EIWN+VF+ + R + T PL K +DTG+G ERLV +LQ
Sbjct: 185 DDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 41.3 bits (98), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 540 ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 574
+ C GTHV NTG I + ++ S N G++ I
Sbjct: 9 FDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRI 43
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 45.5 bits (108), Expect = 4e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 359 LIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFK--- 415
L+ D+T + GGQ D G ++ + ++ +G + H+G S
Sbjct: 5 LVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDV---RRKDGVVYHYGVFEGSNPESA 61
Query: 416 --VTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRV 451
G V VD R R H+ HLL+ + RV
Sbjct: 62 SPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARV 99
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 37.7 bits (89), Expect = 5e-04
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 540 ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 574
S E C GTHV NTG I + ++ G++ I
Sbjct: 9 FSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|179490 PRK02877, PRK02877, hypothetical protein; Provisional.
Length = 106
Score = 32.1 bits (73), Expect = 0.30
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 189 VKTQPELEQFNIMEEPGLVLGVKYLTKQLARD--PSITEISGDMAFTLYDTYGLSKNIIQ 246
T P LE I+E G+V G L + RD I +I G G S +
Sbjct: 3 FSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG----------GRSGAYEK 52
Query: 247 ELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDL 285
EL A+++ AFE EL E+++A A V ID+
Sbjct: 53 ELRKAREI-----AFE----ELGEQARALGADAVVGIDI 82
>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit,
Proteobacterial. This model represents DnaQ, the DNA
polymerase III epsilon subunit, as found in most
Proteobacteria. It consists largely of an exonuclease
domain as described in Pfam model pfam00929. In
Gram-positive bacteria, closely related regions are
found both in the Gram-positive type DNA polymerase III
alpha subunit and as an additional N-terminal domain of
a DinG-family helicase. Both are excluded from this
model, as are smaller proteins, also outside the
Proteobacteria, that are similar in size to the epsilon
subunit but as different in sequence as are the
epsilon-like regions found in Gram-positive bacteria
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 225
Score = 32.0 bits (73), Expect = 0.99
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 85 LDTSYRMLSDYSRMI-TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSY 143
L + + + ++ R+I T+A+A FP L DAL FKV +
Sbjct: 104 LGPTIKKIGEFCRVIDTLAMARERFPGQRNSL-----DALC---KRFKVDNSHRTLHGAL 155
Query: 144 NIAEILGDVYPEI---QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 200
A +L +VY + Q+S+ + L + A +K L P +
Sbjct: 156 LDAHLLAEVYLALTGGQESLLE--LAESNSGEAAKPSKSAEMKLGATLRVLAPREAELQA 213
Query: 201 MEE 203
E
Sbjct: 214 HEA 216
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal. This
domain is often found in association with the kinase
domains pfam00069 or pfam07714. In many proteins it is
duplicated. It contains six conserved cysteines which
are involved in disulphide bridges. It has a role in
salt stress response and has antifungal activity.
Length = 106
Score = 29.7 bits (67), Expect = 1.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 444 LNAALRRVLT-CTYQKSCRVFSDECALDFSVY 474
L A+ + C +K R++ D C L + Y
Sbjct: 73 LATAVSELRRCCPNKKGGRIWYDSCFLRYESY 104
>gnl|CDD|218775 pfam05844, YopD, YopD protein. This family consists of several
bacterial YopD like proteins. Virulent Yersinia species
harbour a common plasmid that encodes essential
virulence determinants (Yersinia outer proteins [Yops]),
which are regulated by the extracellular stimuli Ca2+
and temperature. YopD is thought to be a possible
transmembrane protein and contains an amphipathic
alpha-helix in its carboxy terminus.
Length = 296
Score = 31.3 bits (71), Expect = 2.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 582 SKAAVENGK-QLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLE 630
S VE GK Q A ++ ATI Q +Q E+ ++ + +K + +L++
Sbjct: 230 SAVQVEQGKSQAEAKEDEVNATIAQAEKQKAEDNMSFNANFMKDVLQLMQ 279
>gnl|CDD|226023 COG3492, COG3492, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 104
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 246 QELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHF 291
QEL+ ++ L AF + + L+ER S+V +IDLM+L F
Sbjct: 4 QELSEEQRDRLEAAAFRRLVEHLQER------SDVQNIDLMNLAGF 43
>gnl|CDD|222970 PHA03072, PHA03072, putative viral membrane protein; Provisional.
Length = 190
Score = 30.0 bits (68), Expect = 3.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 156 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELE 196
Q S N + L + +RI K VK W+PLV+++ +LE
Sbjct: 48 FQTSDNSVFSELTKYARI-----KNNVKSWRPLVESKTKLE 83
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.0 bits (70), Expect = 3.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 105 DNMFPDATAKLRNVVRDALLISEDVFKVKQ---GKLVKE 140
D+M D T LR+ VR +L+S D+ V+ GK VKE
Sbjct: 1293 DSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKE 1331
>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated.
Length = 205
Score = 29.8 bits (67), Expect = 4.7
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 587 ENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLA 646
KQ + + + A ++N+ +E ++Q N+E L+ LE + +
Sbjct: 92 NELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQ 151
Query: 647 ELSKNVKLKLRQFAKVRI------TEELIEK--CKEDTPYLV-HYIRD 685
E+ K + Q K + EELI+K +ED LV +IR+
Sbjct: 152 EIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIRE 199
>gnl|CDD|146144 pfam03356, Pox_LP_H2, Viral late protein H2. All Members of this
family show similarity to the vaccinia virus late
protein H2. This protein is often referred to by its
gene name of H2R. Members from this family all belong to
the viral taxon Poxviridae.
Length = 189
Score = 29.6 bits (67), Expect = 4.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 156 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELE 196
Q S N + L + +RI K +K WKPLV+++ ++E
Sbjct: 48 FQTSDNSVLSELAKYARI-----KNNIKSWKPLVESKTKIE 83
>gnl|CDD|200395 TIGR04144, archaeo_VPXXXP, archaeosortase B, VPXXXP-CTERM-specific.
Members of this protein family are found so far in
Methanohalophilus mahii DSM 5219 and Methanohalobium
evestigatum Z-7303, along with five and nine proteins,
respectively, with the VPXXXP-CTERM protein sorting
signal (TIGR04143). In these species, this boutique
system represents a second
exosortase/archaeosortase-type system.
Length = 156
Score = 29.1 bits (65), Expect = 5.1
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 375 DDIGVAYLTNTTQENGKVEIGELA---SLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMR 431
DD+ + N T + +G S++ I+HF N + + KV T E+ +
Sbjct: 24 DDLE--FFRNITADGFSAILGLFGIQNSVDENIIHFENGIIALKVIDECTGIYEL--LVY 79
Query: 432 LGCMRAHTTSH 442
GC+ A++T+
Sbjct: 80 SGCVLAYSTTF 90
>gnl|CDD|151880 pfam11441, MxiM, Pilot protein MxiM. MxiM, a Shigella pilot
protein, is essential for the assembly and membrane
association of the Shigella secretin MxiD. MxiM contains
an orthologous secretin component and has a specific
binding domain for the acyl chains of bacterial lipids.
The C terminal domain of MxiD hinders lipid binding to
MxiM.
Length = 115
Score = 28.5 bits (63), Expect = 6.0
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 566 SYNHGVRSI----KCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHE 621
S+N +SI KC++G++ + GK + N N ++ D ++ Q
Sbjct: 28 SFNTTNKSINVYSKCISGKAV-YSFNAGKFMG----------NFNVKEVDGCFMDAQKIA 76
Query: 622 IKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKL 656
I L +L+D + +K ND +L E VKLKL
Sbjct: 77 IDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKL 111
>gnl|CDD|164862 PHA01631, PHA01631, hypothetical protein.
Length = 176
Score = 29.1 bits (65), Expect = 6.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 465 DECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIY 524
DE D+ V +T + + + KY +I + R +R + LT +
Sbjct: 14 DELDFDYVVVDKTFNDMTECQIPKYQEKIIWIMTNTEIRWLRIA-KQLLTIVNFAKN--I 70
Query: 525 PDDVILIDISD 535
DD+I I SD
Sbjct: 71 EDDIIAIIDSD 81
>gnl|CDD|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy
production and conversion].
Length = 383
Score = 29.5 bits (66), Expect = 6.8
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 36/173 (20%)
Query: 159 SINKIQLILGEESRIFDNLRKAAVKEW--------KPLVKTQPELEQF---NIMEEPGLV 207
SI K L++ E R + +E+ K KT+ L I+E +V
Sbjct: 116 SIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRGSLSDISLGIIVEREDVV 175
Query: 208 LGVKYLTK-----QLARDP----------------SITEISGDMAFTLYDTYGLSKNI-- 244
G ++LT A P S +++ D + L+ Y K
Sbjct: 176 EGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEED 235
Query: 245 IQELAAAKKLTLCHEAFEQKLNE--LKERSKAKAASNVPDIDLMDLKHFPVTD 295
+ +A +K + L+E + ER +A + + LM H +T+
Sbjct: 236 FRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAMEKILMRFAHVALTE 288
>gnl|CDD|219915 pfam08578, DUF1765, Protein of unknown function (DUF1765). This
region represents a conserved region found in
hypothetical proteins from fungi, mycetozoa and
entamoebidae.
Length = 123
Score = 28.3 bits (64), Expect = 7.4
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 38 FERLVTILQNKTSTYDTD----LFLPLLETIEKVSGAKPYGRTFTTSNRTD----LDTSY 89
+ ++ L KTS YD++ L L E I + + + P TF D L
Sbjct: 2 LDLILKALAKKTSLYDSNAVFLLLDLLEEFIFQFNRSLPSIPTF-----FDWEFWLKGIR 56
Query: 90 RML-SDYSRMITVALAD--NMFPDATAKLRNVVRDALLISEDVF 130
ML SD+++ + ALA N++P A LR + D L+ E+VF
Sbjct: 57 MMLNSDHAQSLLRALAFLFNIWPLIPADLRKKILD-FLLEEEVF 99
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 29.3 bits (66), Expect = 8.3
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 39/139 (28%)
Query: 44 ILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI---- 99
I + KT T L LPLLE R ++ + L D+ ++
Sbjct: 326 IAKGKTRFGPTALPLPLLE-------------------RYNMSS----LPDFLKVWNPDL 362
Query: 100 -TVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV-----KELSYNIAEILG 150
+A+ ++F D+T + LRN + + L+++ +F K+V K+L Y + G
Sbjct: 363 NLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDLRYCVG--YG 420
Query: 151 DVYPEIQDSINKIQLILGE 169
V P++ D ++K +L+LGE
Sbjct: 421 GVRPQLIDKVSK-KLLLGE 438
>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease
domain of the epsilon subunit of Escherichia coli DNA
polymerase III and similar proteins. This subfamily is
composed of the epsilon subunit of Escherichia coli DNA
polymerase III (Pol III) and similar proteins. Pol III
is the main DNA replicating enzyme in bacteria,
functioning as the chromosomal replicase. It is a
holoenzyme complex of ten different subunits, three of
which (alpha, epsilon, and theta) compose the catalytic
core. The Pol III epsilon subunit, encoded by the dnaQ
gene, is a DEDDh-type 3'-5' exonuclease which is
responsible for the proofreading activity of the
polymerase, increasing the fidelity of DNA synthesis. It
contains three conserved sequence motifs termed ExoI,
ExoII and ExoIII, with a specific Hx(4)D conserved
pattern at ExoIII. These motifs are clustered around the
active site and contain four conserved acidic residues
that serve as ligands for the two metal ions required
for catalysis. The epsilon subunit of Pol III also
functions as a stabilizer of the holoenzyme complex.
Length = 167
Score = 28.3 bits (64), Expect = 9.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 90 RMLSDYSRMI-TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEI 148
+ + D+ R+I T+ALA FP L DAL F + + AE+
Sbjct: 107 KKIIDFCRVIDTLALARKKFPGKPNSL-----DALC---KRFGIDNSHRTLHGALLDAEL 158
Query: 149 LGDVYPE 155
L +VY E
Sbjct: 159 LAEVYLE 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,405,309
Number of extensions: 4039964
Number of successful extensions: 3912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3864
Number of HSP's successfully gapped: 59
Length of query: 797
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 692
Effective length of database: 6,280,432
Effective search space: 4346058944
Effective search space used: 4346058944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.7 bits)