RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6337
(797 letters)
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 76.8 bits (188), Expect = 2e-16
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 53 DTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT 112
+ D+ PL++ E+VSG K YG + + D + R+++D+ R IT A++D + P
Sbjct: 1 EIDIIFPLIQFGEEVSG-KKYG------EKFETDVALRVIADHLRAITFAISDGVIPSNE 53
Query: 113 ---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGE 169
+R ++R A + +L + V + +
Sbjct: 54 GRGYVIRRILRRA------------MRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELS 101
Query: 170 ESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGD 229
+ ++ E ++F + G+ + + K L +SG
Sbjct: 102 REFVKGIVKG--------------EEKRFIKTLKAGMEYIQEVIQKALEEGRKT--LSGK 145
Query: 230 MAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDID 284
FT YDTYG ++I E+A K L + E F+ +L E +ER++ +
Sbjct: 146 EVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVK 200
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 66.1 bits (160), Expect = 2e-13
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 15/148 (10%)
Query: 435 MRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIND 492
+R H+ H++ A+ +VL + S V ++ L + +
Sbjct: 6 VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65
Query: 493 VIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVI-----SREPCCG 547
V + R + GE D + + V+ + C
Sbjct: 66 VKENAPIKIYELPREEAEK-------MFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNK 118
Query: 548 THVFNTGHIESCTVIGYK-SYNHGVRSI 574
H TG I + + + G+ I
Sbjct: 119 EHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 67.3 bits (164), Expect = 4e-13
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 1 DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTY 52
+EIWN+VF+ + R + PL IDTG+G ER+ ++LQ K S +
Sbjct: 185 GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 236
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 63.6 bits (154), Expect = 1e-12
Identities = 26/149 (17%), Positives = 38/149 (25%), Gaps = 24/149 (16%)
Query: 427 DARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAV 486
D R MR HT HLL L VL + + + +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQI 60
Query: 487 EKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCC 546
N + + +V D I D PC
Sbjct: 61 ISLFNKYVDEGGEVKIWWEG--------------------DRRYTQIRD----FEVIPCG 96
Query: 547 GTHVFNTGHIESCTVIGYKSYNHGVRSIK 575
GTHV + I + S G + ++
Sbjct: 97 GTHVKDIKEIGHIKKLKRSSIGRGKQRLE 125
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 50.9 bits (121), Expect = 6e-08
Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 438 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 497
H+T+HL+ A++R+ V DF + + +S D +EK + ++ +
Sbjct: 13 HSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDID-QNISSDDFEQIEKTMKQIVNEN 71
Query: 498 VQVDRRHMRASELPSL----THLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 553
++++R+ + E L + + I D+ + + + + + C G HV +T
Sbjct: 72 MKIERKVVSRDEAKELFSNDEYKLELIDAIPEDEN--VTLYSQGDFT--DLCRGVHVPST 127
Query: 554 GHIESCTVIGYKS-YNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLA 600
I+ ++ Y G + K L A + K+L A ++ L
Sbjct: 128 AKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAF-FDKKELKAHLQMLE 174
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 36.4 bits (84), Expect = 0.001
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 347 DSIQLEHNAWV------GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL 400
D+ E V ++ D+T Y T GGQ D G + + +
Sbjct: 12 DAYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRG--TINGVEVLDVYKDEE----- 64
Query: 401 EGKIVHFGNVVSSFKV 416
G + H FKV
Sbjct: 65 -GNVWHVVKEPEKFKV 79
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 34.0 bits (77), Expect = 0.029
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 6/123 (4%)
Query: 438 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 497
H+ +HLL A++++ T V + D + D A ++ +
Sbjct: 11 HSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNY 70
Query: 498 VQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCC----GTHVFNT 553
+ ++ T I DK + E G HV N
Sbjct: 71 DVIKKKVSW--HEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM 128
Query: 554 GHI 556
Sbjct: 129 RFC 131
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase
2C, C-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 27.7 bits (62), Expect = 0.98
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 663 RITEELIEKCKEDTPYLVHYIRDDAVE-IQALPP 695
EE+I+K E P LVH +R A E I +LPP
Sbjct: 18 CRVEEIIKKQGEGVPDLVHVMRTLASENIPSLPP 51
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus
cereus [TaxId: 1396]}
Length = 103
Score = 26.6 bits (59), Expect = 5.1
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 188 LVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDP--SITEISGDMAFTLYDTYGLSKNII 245
+V T ++ I+E +V G + + RD S+ ++ G G + +
Sbjct: 2 IVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVG----------GRAGSYE 51
Query: 246 QELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDL 285
+L A+ + ++E+KE +K K A+ + +D+
Sbjct: 52 SKLKEAR---------DIAMDEMKELAKQKGANAIVGVDV 82
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 27.8 bits (61), Expect = 5.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 35 GLGFERLVTILQNKTSTYDTDLF 57
G+G ERLV + + F
Sbjct: 261 GIGVERLVRFIVGAKHIAEVQPF 283
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 27.5 bits (60), Expect = 6.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 35 GLGFERLVTILQNKTSTYDTDLF 57
G+G ER+V + + LF
Sbjct: 322 GIGLERVVMFYLDLKNIRRASLF 344
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 27.6 bits (60), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 35 GLGFERLVTILQNKTSTYDTDLF 57
GLG ERL+ + + + + LF
Sbjct: 304 GLGAERLIKQMLDLPNIREVILF 326
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 27.4 bits (60), Expect = 7.3
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 35 GLGFERLVTILQNKTSTYDTDLF 57
+G ERL L + F
Sbjct: 281 AIGAERLTQKLLGLPNVRYARAF 303
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 27.1 bits (59), Expect = 8.1
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 35 GLGFERLVTILQNKTSTYDTDLFLPLL 61
G+G +R++ + N + D LF P +
Sbjct: 315 GIGIDRMIMLFTNSHTIRDVILF-PAM 340
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 27.0 bits (59), Expect = 9.4
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 35 GLGFERLVTILQNKTSTYDTDLF 57
G +RL +L + D F
Sbjct: 293 AFGLDRLTMLLTGTDNIRDVIAF 315
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,870,709
Number of extensions: 135952
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 21
Length of query: 797
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 704
Effective length of database: 1,130,706
Effective search space: 796017024
Effective search space used: 796017024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)