BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6338
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VRJ1|SYAM_DROME Alanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster
GN=Aats-ala-m PE=2 SV=1
Length = 1012
Score = 140 bits (353), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/136 (50%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+KR+AC MALE L + P ++ RLY TYF G G+P D E +IW
Sbjct: 103 MLGNWSFGDYFKREACAMALELL-RGPYNIDPGRLYVTYFAGDKVLGIPADLECFEIWRS 161
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR---VNADRNDLIEI 117
LG P I G NFWEMG+TGPCG +EIH D + + S R VNA R+DL E+
Sbjct: 162 LGFPASRILPFGCADNFWEMGATGPCGPCTEIHIDHRPDLGSVEQRAKLVNAGRSDLTEL 221
Query: 118 WNIVFISHKRVSADTI 133
WN+VFI + R + +I
Sbjct: 222 WNLVFIQYNRHADGSI 237
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars
PE=2 SV=1
Length = 968
Score = 137 bits (344), Expect = 3e-32, Method: Composition-based stats.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLG+WSF DY+K AC+MALE LT+ ++P++RLY TYFGG + GL D E IW
Sbjct: 100 MLGSWSFGDYFKELACKMALELLTQE-FAIPVERLYVTYFGGDEAAGLEPDLECKQIWQN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ I MK NFWEMG TGPCG SEIHYD G +A VN D +++EIWN+
Sbjct: 159 LGLDDAKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNL 217
Query: 121 VFISHKRVSADTIVP 135
VFI + R + + P
Sbjct: 218 VFIQYNRETDGLLKP 232
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=aars-2 PE=2 SV=1
Length = 968
Score = 134 bits (338), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/135 (48%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++ A E LT +P +RLY + FGG + G+P D E DIW
Sbjct: 100 MLGNWSFGDYFKKEIITWAWELLTTV-YGIPAERLYVSVFGGDEANGVPADSEARDIWRS 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+GVP + I GMK NFWEMG GPCG SEIHYD G A VNAD ++EIWN+
Sbjct: 159 VGVPDERILNFGMKDNFWEMGDVGPCGPCSEIHYDRIGN-RDASHLVNADDPMVVEIWNL 217
Query: 121 VFISHKRVSADTIVP 135
VFI R + P
Sbjct: 218 VFIQFNREEGGVLKP 232
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-ala PE=2 SV=1
Length = 966
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++ C A EFLT+ ++LP DRLY TYFGG GL D E +WL+
Sbjct: 99 MLGNWSFGDYFKKEICSWAWEFLTQR-LALPKDRLYVTYFGGDAASGLEPDLECKQMWLD 157
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ +HI MK NFWEMG TGPCG SE+H+D G S VN D D++EIWN+
Sbjct: 158 LGLKPEHILPGSMKDNFWEMGETGPCGPCSELHFDRIG-GRSVPELVNMDDPDVLEIWNL 216
Query: 121 VFISHKRVS 129
VFI + R S
Sbjct: 217 VFIQYNRES 225
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1
Length = 968
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLG+WSF DY+K AC+MALE LT+ +P++RLY TYFGG + GL D E IW
Sbjct: 100 MLGSWSFGDYFKELACKMALELLTQE-FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ I MK NFWEMG TGPCG SEIHYD G +A VN D +++EIWN+
Sbjct: 159 LGLDEARILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNL 217
Query: 121 VFISHKRVSADTIVP 135
VFI + R S + P
Sbjct: 218 VFIQYNRESDGVLKP 232
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1
SV=3
Length = 968
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLG+WSF DY+K AC+MALE LT+ +P++RLY TYFGG + GL D E IW
Sbjct: 100 MLGSWSFGDYFKELACKMALELLTQE-FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ I MK NFWEMG TGPCG SEIHYD G +A VN D +++EIWN+
Sbjct: 159 LGLDEAKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNL 217
Query: 121 VFISHKRVSADTIVP 135
VFI + R S + P
Sbjct: 218 VFIQYNRESDGVLKP 232
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2
Length = 968
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLG+WSF DY+K AC+MALE LT+ +P++RLY TYFGG + GL D E IW
Sbjct: 100 MLGSWSFGDYFKELACKMALELLTQE-FGIPIERLYVTYFGGDEAAGLEADLECKQIWQN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ I MK NFWEMG TGPCG SEIHYD G +A VN D +++EIWN+
Sbjct: 159 LGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNL 217
Query: 121 VFISHKRVSADTIV 134
VFI + R AD I+
Sbjct: 218 VFIQYNR-EADGIL 230
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ALA1 PE=1 SV=1
Length = 969
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 86/128 (67%), Gaps = 4/128 (3%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A + E LTK L DRLY TYFGG ++ GL D E + WL+
Sbjct: 119 MLGNWSFGDYFKKEAIDYSWELLTKV-YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLK 177
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-MKGEPSSALARVNADRNDLIEIWN 119
+GVP DHI ++ NFWEMG GPCG SEIHYD + G +SAL VN D +++E+WN
Sbjct: 178 VGVPEDHILPGSVEDNFWEMGDQGPCGPCSEIHYDRIGGRNASAL--VNMDDPNVLEVWN 235
Query: 120 IVFISHKR 127
+VFI + R
Sbjct: 236 VVFIQYNR 243
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1
Length = 968
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLG+WSF DY+K AC+MALE LT+ +P++RLY TYFGG + GL D E IW
Sbjct: 100 MLGSWSFGDYFKELACKMALELLTQE-FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LG+ I MK NFWEMG TGPCG SEIHYD G +A VN D +++EIWN+
Sbjct: 159 LGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNL 217
Query: 121 VFISHKRVSADTIV 134
VFI + R AD I+
Sbjct: 218 VFIQYNR-EADGIL 230
>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2
SV=1
Length = 980
Score = 129 bits (325), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 11/128 (8%)
Query: 1 MLGNWSFN-DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
MLGNW+F +Y+K +AC MA E LT+ +P DRL+ +YF G Q GL D ET DIWL
Sbjct: 128 MLGNWAFGGEYFKEEACSMAWELLTQV-YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWL 186
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
LGVP + G + NFWEMG TGPCG +EIHYD+ G S L+E+WN
Sbjct: 187 SLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGSP---------QLVELWN 237
Query: 120 IVFISHKR 127
+VF+ H R
Sbjct: 238 LVFMQHYR 245
>sp|D3ZX08|SYAM_RAT Alanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Aars2
PE=2 SV=1
Length = 985
Score = 129 bits (323), Expect = 7e-30, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 80/128 (62%), Gaps = 11/128 (8%)
Query: 1 MLGNWSFN-DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
MLGNW+F +Y+K++AC MA E LT+ +P DRL+ +YF G + GL D ET DIWL
Sbjct: 128 MLGNWAFGGEYFKKEACSMAWELLTQV-YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWL 186
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
LGVP + G++ NFWEMG TGPCG +EIHYD+ G L+E+WN
Sbjct: 187 SLGVPASRVLSFGLQENFWEMGDTGPCGPCTEIHYDLAGGMGPP---------QLVELWN 237
Query: 120 IVFISHKR 127
+VF+ H R
Sbjct: 238 LVFMQHYR 245
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1
Length = 967
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 79/127 (62%), Gaps = 2/127 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
M+GNWSF DY+K++ C A E LT L +RLY TYF G GL D E +IWL
Sbjct: 100 MMGNWSFGDYFKKEICAWAWELLTDV-FKLSRERLYVTYFEGDPSSGLEPDLECRNIWLN 158
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
LGVP HI MK NFWEMG TGPCG SE+HYD G+ +A VN D D++EIWN+
Sbjct: 159 LGVPEAHILPGSMKDNFWEMGETGPCGPCSELHYDRIGDREAA-HLVNMDDPDVLEIWNL 217
Query: 121 VFISHKR 127
VFI R
Sbjct: 218 VFIQFNR 224
>sp|Q5JTZ9|SYAM_HUMAN Alanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1
SV=1
Length = 985
Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/136 (44%), Positives = 83/136 (61%), Gaps = 11/136 (8%)
Query: 1 MLGNWSFN-DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
MLGNW+F +Y+K +AC MA E LT+ +P +RL+ +YF G + GL D ET DIWL
Sbjct: 133 MLGNWAFGGEYFKEEACNMAWELLTQV-YGIPEERLWISYFDGDPKAGLDPDLETRDIWL 191
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
LGVP + G + NFWEMG TGPCG +EIHYD+ G + L+E+WN
Sbjct: 192 SLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAP---------QLVELWN 242
Query: 120 IVFISHKRVSADTIVP 135
+VF+ H R + ++ P
Sbjct: 243 LVFMQHNREADGSLQP 258
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3
Length = 1003
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E LTK LP DR+Y TYFGG ++ GL D E DIWL+
Sbjct: 154 MLGNWSFGDYFKKEAIEWAWELLTKV-YGLPTDRIYATYFGGDEKAGLQPDNEARDIWLK 212
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+ +P + G K NFWEMG TGPCG +EIHYD G +A + VN D +EIWN+
Sbjct: 213 V-LPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAA-SLVNNDDPTCLEIWNL 270
Query: 121 VFISHKRVSADTIVP 135
VFI R S ++ P
Sbjct: 271 VFIQFNRESDGSLKP 285
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3
Length = 983
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A + LT+ +P DRLY TYF G ++ GL D E ++W
Sbjct: 129 MLGNWSFGDYFKKEAITYSWTLLTEV-YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN 187
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+GVP DHI K NFWEMG GPCG SEIHYD G ++A + VN D D++E+WN+
Sbjct: 188 VGVPDDHILPGNAKDNFWEMGDQGPCGPCSEIHYDRIGGRNAA-SLVNMDDPDVLEVWNL 246
Query: 121 VFISHKRVSADTIVP 135
VFI R ++ P
Sbjct: 247 VFIQFNREQDGSLKP 261
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=alaS PE=2 SV=1
Length = 946
Score = 126 bits (316), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF +Y+K++A A E LT+ L +RLY TYF G + GL D E ++WL+
Sbjct: 97 MLGNWSFGNYFKKEAITWAWELLTEV-YKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQ 155
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+P + + GMK NFWEMG GPCG SEIHYD K E + VNAD LIEIWN+
Sbjct: 156 Y-LPEERVLPFGMKENFWEMGDQGPCGPCSEIHYD-KVEGRDGASFVNADDPTLIEIWNL 213
Query: 121 VFISHKRVSADTIVP 135
VFI + R + ++ P
Sbjct: 214 VFIQYNREADKSLRP 228
>sp|Q5AQL1|SYA_EMENI Alanine--tRNA ligase OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ala1 PE=3 SV=2
Length = 961
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A + + E LT+ L RLY TYF G+ + GL D E +W
Sbjct: 106 MLGNWSFGDYFKKEAIQYSWELLTQV-YGLDPGRLYVTYFEGNKEGGLQPDLEAKALWKA 164
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+GVP DHI MK NFWEMG GPCG SEIHYD G ++A + VN D +++EIWN
Sbjct: 165 VGVPEDHILPGNMKDNFWEMGDQGPCGPCSEIHYDRIGGRNAA-SLVNQDDPNVLEIWNN 223
Query: 121 VFISHKR 127
VFI + R
Sbjct: 224 VFIQYNR 230
>sp|Q1IJG7|SYA_KORVE Alanine--tRNA ligase OS=Koribacter versatilis (strain Ellin345)
GN=alaS PE=3 SV=1
Length = 1098
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 86/144 (59%), Gaps = 11/144 (7%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
MLGN+SF DY+K+DA A E +T P + D+LY T F G + G+P D+E +WL
Sbjct: 105 MLGNFSFGDYFKKDAIAYAWELVTSPDWYGMQQDKLYATIFKGEN--GVPRDDEAYQLWL 162
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDM------KGEPSSALA--RVNADR 111
++GVP++ + + GMK NFW MG TGPCG SE+HYDM K P A + +
Sbjct: 163 DVGVPKERVFEMGMKDNFWAMGDTGPCGPCSELHYDMGVASSDKKNPECAAGECKFPCEC 222
Query: 112 NDLIEIWNIVFISHKRVSADTIVP 135
+EIWN+VF+ R ++ T+ P
Sbjct: 223 GRYVEIWNLVFMQFDRDASGTLNP 246
>sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ala1 PE=1 SV=1
Length = 959
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A MA + LT L D+LY TYFGG ++ GL D E +WL+
Sbjct: 105 MLGNWSFGDYFKKEAIAMAWDLLTNV-YGLKKDQLYVTYFGGHEESGLEPDLEARQLWLD 163
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
+G+ + +K NFWEMG GPCG SEIHYD G + VN D +++EIWNI
Sbjct: 164 IGIDESRVIPGSLKDNFWEMGDQGPCGPCSEIHYDRIGN-RTVPELVNMDDPNVLEIWNI 222
Query: 121 VFISHKRVSADTIVP 135
VFI R ++ P
Sbjct: 223 VFIQFNREKDGSLRP 237
>sp|A6LEZ8|SYA_PARD8 Alanine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=alaS PE=3 SV=1
Length = 873
Score = 115 bits (287), Expect = 9e-26, Method: Composition-based stats.
Identities = 61/139 (43%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L + + L +RLY T F GS GL D E W E
Sbjct: 92 MLGNWSFGDYFKKEAINWAWEYLVEV-LKLNPERLYATVFEGSPAEGLDRDNEAAGYW-E 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR----VNADRNDLIE 116
+P+DHI NFWEMG TGPCG SEIH D++ + A VN D +IE
Sbjct: 150 QYLPKDHILNGNKHDNFWEMGDTGPCGPCSEIHIDLRSDEERAAVSGADMVNKDHPQVIE 209
Query: 117 IWNIVFISHKRVSADTIVP 135
IWN+VF+ R + ++ P
Sbjct: 210 IWNLVFMQFNRKADGSLEP 228
>sp|Q64YB4|SYA_BACFR Alanine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=alaS
PE=3 SV=1
Length = 872
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L + L + LY T F GS + GL D E W E
Sbjct: 92 MLGNWSFGDYFKKEAISWAWEYLVDV-LKLNPEHLYATVFEGSPEEGLERDNEAASYW-E 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR------VNADRNDL 114
+P+DHI NFWEMG TGPCG SEIH D++ P+ A+ VN D +
Sbjct: 150 QYLPKDHIINGNKHDNFWEMGDTGPCGPCSEIHIDLR--PAEERAKISGRDLVNHDHPQV 207
Query: 115 IEIWNIVFISHKRVSADTIVP 135
IEIWN+VF+ + R + T+ P
Sbjct: 208 IEIWNLVFMQYNRKADSTLEP 228
>sp|Q5LHE6|SYA_BACFN Alanine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=alaS PE=3 SV=1
Length = 872
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L + L + LY T F GS + GL D E W E
Sbjct: 92 MLGNWSFGDYFKKEAISWAWEYLVDV-LKLNPEHLYATVFEGSPEEGLERDNEAASYW-E 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR------VNADRNDL 114
+P+DHI NFWEMG TGPCG SEIH D++ P+ A+ VN D +
Sbjct: 150 QYLPKDHIINGNKHDNFWEMGDTGPCGPCSEIHIDLR--PAEERAKISGRDLVNHDHPQV 207
Query: 115 IEIWNIVFISHKRVSADTIVP 135
IEIWN+VF+ + R + T+ P
Sbjct: 208 IEIWNLVFMQYNRKADSTLEP 228
>sp|Q23122|SYAM_CAEEL Alanine--tRNA ligase, mitochondrial OS=Caenorhabditis elegans
GN=aars-1 PE=1 SV=2
Length = 793
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 1 MLGNWSFNDYY-KRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
M+GNWSFND + K +ACR A E+L + + + DRLY +YFGG ++ GLP D E +IW
Sbjct: 111 MMGNWSFNDAFSKEEACRYAWEYLVEI-LGINADRLYVSYFGGIEKLGLPEDRECREIWK 169
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-MKGEPSSALARVNADRNDLIEIW 118
+GV + I + NFWEMG+ GPCG +EIHYD + G +S L VN D + ++EIW
Sbjct: 170 RIGVSSNRILP-FVAENFWEMGAAGPCGPCTEIHYDRIGGRDASRL--VNID-DSVVEIW 225
Query: 119 NIVFISHKRVSADTI 133
NIVF+S R S I
Sbjct: 226 NIVFMSSVRDSCGQI 240
>sp|A5FIP9|SYA_FLAJ1 Alanine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=alaS PE=3 SV=1
Length = 879
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E LT+ +P + LY + F GS + +P D+E DIW
Sbjct: 91 MLGNWSFGDYFKKEAINWAWELLTEV-YKIPKENLYVSVFEGSKEDNVPFDQEAWDIWKT 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR----VNADRNDLIE 116
L + D I K NFWEMG GPCG SEIH D++ AL VN D ++E
Sbjct: 150 L-IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVDLRSAEEKALVSGKSLVNNDHPQVVE 208
Query: 117 IWNIVFISHKR 127
IWN VF+ R
Sbjct: 209 IWNNVFMEFNR 219
>sp|Q2S2B6|SYA_SALRD Alanine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=alaS PE=3 SV=1
Length = 966
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGNWSF DY+K +A R A E L + L DRLY T G D +GL D E D+WL
Sbjct: 108 MLGNWSFGDYFKAEAIRWAWELLVER-WGLAPDRLYATVHEGDDDFGLSADAEAYDLWLS 166
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKG----EPSSALARVNADRNDLI 115
E +P + + E K NFW MG TGPCG SE+H D++ + + VN D ++
Sbjct: 167 ETPLPEERVLYEPSKENFWMMGDTGPCGPCSELHVDLRPPEARQETPGRELVNVDHPQVM 226
Query: 116 EIWNIVFISHKRVSADTIVP 135
E+WN+VFI + + ++ P
Sbjct: 227 ELWNLVFIQYNAQTDGSLEP 246
>sp|Q8KG04|SYA_CHLTE Alanine--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=alaS PE=3 SV=1
Length = 885
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 11/136 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGNWSF DYYK++A A E +T+ LP +RLY T + DEE+ +W
Sbjct: 91 MLGNWSFGDYYKKEAIGWAWELMTEV-WKLPKERLYATVYHD--------DEESFKLWQS 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
E + HI K G K NFWEMG TGPCG SEIH D+ + S VN + +IE+WN
Sbjct: 142 ETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTPDGSGG-PLVNVGDHRVIELWN 200
Query: 120 IVFISHKRVSADTIVP 135
+VFI + R + T+VP
Sbjct: 201 LVFIQYDRQADGTLVP 216
>sp|A6L1L8|SYA_BACV8 Alanine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=alaS PE=3 SV=1
Length = 871
Score = 110 bits (274), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/131 (46%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L P D LY T F GS + GL D E W E
Sbjct: 91 MLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKD-LYATVFEGSPEEGLERDNEAASYW-E 148
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSAL----ARVNADRNDLIE 116
+P+DHI NFWEMG TGPCG SEIH D + E A VN D +IE
Sbjct: 149 QFLPKDHILNGNKHDNFWEMGDTGPCGPCSEIHIDSRSEEEKAQIPGNQLVNKDHPQVIE 208
Query: 117 IWNIVFISHKR 127
IWN+VF+ R
Sbjct: 209 IWNLVFMQFNR 219
>sp|A1BD33|SYA_CHLPD Alanine--tRNA ligase OS=Chlorobium phaeobacteroides (strain DSM
266) GN=alaS PE=3 SV=1
Length = 888
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/136 (46%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DYYK++A A E LT LP +RLY T + DEE+ +W E
Sbjct: 91 MLGNWSFGDYYKKEAISWAWELLTSV-WHLPKERLYATVYYD--------DEESYLLWQE 141
Query: 61 -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
+P DHI K K NFWEMG TGPCG SEIH D+ E S VNA +IE+WN
Sbjct: 142 ETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLT-EDGSGKPLVNAGDYRVIELWN 200
Query: 120 IVFISHKRVSADTIVP 135
+VFI + R + + P
Sbjct: 201 LVFIQYNRQADGRLEP 216
>sp|Q7MV54|SYA_PORGI Alanine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=alaS PE=3 SV=1
Length = 876
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L + L RLY T F G+ + GL D E W +
Sbjct: 92 MLGNWSFGDYFKKEAIEWAWEYLVTV-LGLDPQRLYATVFEGNPEEGLDRDNEAASYWAQ 150
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSA----LARVNADRNDLIE 116
+P + I NFWEMG TGPCG SEIH D++ + A L +N +IE
Sbjct: 151 F-LPEERIINGNKHDNFWEMGDTGPCGPCSEIHIDLRSDEERAQINGLELINKSHPQVIE 209
Query: 117 IWNIVFISHKRVSADTIVP 135
IWN+VF+ + R + ++ P
Sbjct: 210 IWNLVFMQYNRKADASLTP 228
>sp|Q1D084|SYA_MYXXD Alanine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622) GN=alaS
PE=3 SV=1
Length = 898
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 16/141 (11%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGN+SF DY+K DA EF+T+ + L DRL T F G + G P DEE ++W +
Sbjct: 95 MLGNFSFGDYFKADAIAYGWEFVTRT-LGLSTDRLAVTVFNG--EGGTPWDEEAYELWKK 151
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY----------DMKGEPSSALARVNAD 110
GVP + + K G+K NFW MG TGPCG SEIHY + +G+ +A D
Sbjct: 152 QGVPAERLYKLGLKDNFWAMGDTGPCGPCSEIHYHQGDDIPCVEEAEGKKCQGVA---CD 208
Query: 111 RNDLIEIWNIVFISHKRVSAD 131
+ +EIWN+VF+ +R D
Sbjct: 209 CDRWLEIWNLVFMQFERKEKD 229
>sp|Q2YD40|SYA_NITMU Alanine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC 25196
/ NCIMB 11849) GN=alaS PE=3 SV=1
Length = 862
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 79/137 (57%), Gaps = 11/137 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+KR+A R A EFLT + +P +RL+ T + D+E DIWL
Sbjct: 91 MLGNFSFGDYFKRNAIRFAWEFLTDI-LKIPRERLWITVYAE--------DDEAADIWLN 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-MKGEPSSALARVNADRNDLIEIW 118
E+G+ + + NFW+MG TGPCG SEI YD P NAD + +EIW
Sbjct: 142 EVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHGPEIPGGPPGTPNADGDRYVEIW 201
Query: 119 NIVFISHKRVSADTIVP 135
N+VF+ + R SA T+ P
Sbjct: 202 NLVFMQYNRDSAGTLHP 218
>sp|A4SGJ6|SYA_PROVI Alanine--tRNA ligase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=alaS PE=3 SV=2
Length = 885
Score = 108 bits (270), Expect = 9e-24, Method: Composition-based stats.
Identities = 63/128 (49%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DYYK +A A E LT LP +RLY T + D+E+ IW E
Sbjct: 91 MLGNWSFGDYYKEEAITWAWELLTVV-WKLPEERLYATVYHD--------DDESFRIWEE 141
Query: 61 LGVPR-DHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
R DHI + G K NFWEMG TGPCG SEIH D+ + S A VNAD IE+WN
Sbjct: 142 KTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTPD-GSGRALVNADDPQAIELWN 200
Query: 120 IVFISHKR 127
+VFI + R
Sbjct: 201 LVFIQYDR 208
>sp|Q28QV8|SYA_JANSC Alanine--tRNA ligase OS=Jannaschia sp. (strain CCS1) GN=alaS PE=3
SV=1
Length = 884
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 18/140 (12%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGN+SF DY+K DA R A E +TK L RLY T + D+E +IW +
Sbjct: 92 MLGNFSFGDYFKEDAIRYAWELITKD-FGLDKARLYVTVYH--------TDDEAFEIWKK 142
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLI 115
+GVP D I + NFW+MG TGPCG +EI YD G P SA D + I
Sbjct: 143 VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHGEHIWGGPPGSA----EEDGDRFI 198
Query: 116 EIWNIVFISHKRVSADTIVP 135
EIWNIVF+ +++ + T+VP
Sbjct: 199 EIWNIVFMQNEQFADGTMVP 218
>sp|Q8A0M6|SYA_BACTN Alanine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=alaS
PE=3 SV=1
Length = 872
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 10/141 (7%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E+L + + L + LY T F GS + GL D+E W E
Sbjct: 92 MLGNWSFGDYFKKEAINWAWEYLVEV-LKLNPEHLYATVFEGSPEEGLSRDDEAASYW-E 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR------VNADRNDL 114
+P+DHI NFWEMG TGPCG SEIH D++ P+ A+ VN D +
Sbjct: 150 QYLPKDHIINGNKHDNFWEMGDTGPCGPCSEIHIDLR--PAEERAKISGRDLVNHDHPQV 207
Query: 115 IEIWNIVFISHKRVSADTIVP 135
IEIWN+VF+ + R + ++ P
Sbjct: 208 IEIWNLVFMQYNRKADGSLEP 228
>sp|A5CVU0|SYA_VESOH Alanine--tRNA ligase OS=Vesicomyosocius okutanii subsp. Calyptogena
okutanii (strain HA) GN=alaS PE=3 SV=1
Length = 865
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 19/128 (14%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+KR+A A EFLTK ++LP L+ + F DQ D E DIW+
Sbjct: 91 MLGNFSFGDYFKREAIHYAWEFLTKE-LNLPKKNLWVSVF---DQ-----DNEAEDIWVN 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-----MKGEPSSALARVNADRNDL 114
E+G P++ I + G K NFW+MG TGPCG SSEI YD G P A N D +
Sbjct: 142 EIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGEHIAGGPPGHA----NEDGDRY 197
Query: 115 IEIWNIVF 122
IEIWN+VF
Sbjct: 198 IEIWNLVF 205
>sp|Q5QUV7|SYA_IDILO Alanine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=alaS PE=3 SV=1
Length = 865
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 19/141 (13%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
M+GN+SF DY+K+ A + A +FLTK + LP ++L+ T F D+E DIW+
Sbjct: 93 MMGNFSFGDYFKKQAIQYAWDFLTKE-LKLPAEKLWVTVFTE--------DDEAYDIWVK 143
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-----MKGEPSSALARVNADRNDL 114
++GVP D I + G K NFW MG TGPCG SE+ YD G P + D +
Sbjct: 144 DIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGEEVWGGPPGTP----EEDGDRY 199
Query: 115 IEIWNIVFISHKRVSADTIVP 135
IEIWN+VF+ + R + T+ P
Sbjct: 200 IEIWNLVFMQYNRQADGTLEP 220
>sp|A6H0Y3|SYA_FLAPJ Alanine--tRNA ligase OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=alaS PE=3 SV=1
Length = 887
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/131 (43%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K++A A E LT+ +P LY + F GS + +P D+E DIW
Sbjct: 91 MLGNWSFGDYFKKEAINWAWELLTEV-YKIPKQNLYVSVFEGSKEDNVPFDQEAWDIWKG 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPS----SALARVNADRNDLIE 116
L + D I K NFWEMG GPCG SEIH D++ S + VN D ++E
Sbjct: 150 L-IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVDLRTPEEKAQVSGKSLVNNDHPQVVE 208
Query: 117 IWNIVFISHKR 127
IWN VF+ R
Sbjct: 209 IWNNVFMEFNR 219
>sp|Q3B1I7|SYA_PELLD Alanine--tRNA ligase OS=Pelodictyon luteolum (strain DSM 273)
GN=alaS PE=3 SV=1
Length = 887
Score = 105 bits (263), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DYYK +A A E LT+ LP DRLY T + D+E+ IW E
Sbjct: 91 MLGNWSFGDYYKEEAISWAWELLTEV-WKLPADRLYATVYHD--------DDESARIWAE 141
Query: 61 -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
+ HI + G K NFWEMG TGPCG SEIH D+ + S VNA + IE+WN
Sbjct: 142 KTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHIDLTPD-GSGKELVNAGDHRAIELWN 200
Query: 120 IVFISHKR 127
+VFI + R
Sbjct: 201 LVFIQYDR 208
>sp|A5UY81|SYA_ROSS1 Alanine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=alaS PE=3
SV=2
Length = 905
Score = 105 bits (263), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGN+SF DY+K +A MA E LTK LP++RL+FT F G D+ +P D+E +W+
Sbjct: 94 MLGNFSFGDYFKSEAIPMAWELLTKV-FELPVERLWFTVFEGDDE--VPPDDEAAQLWVA 150
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR-VNADRNDLIEIWN 119
G D + + G K NFW M TGPCG SEI + + + A+ VN+D + +EIWN
Sbjct: 151 AGADPDRVLRFGRKDNFWVMADTGPCGPCSEITIYIGDDLRAMSAQGVNSDDPNYVEIWN 210
Query: 120 IVFISHKR 127
VF+ +R
Sbjct: 211 NVFMQFER 218
>sp|A0LXX3|SYA_GRAFK Alanine--tRNA ligase OS=Gramella forsetii (strain KT0803) GN=alaS
PE=3 SV=1
Length = 871
Score = 105 bits (262), Expect = 7e-23, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQY-GLPCDEETLDIWL 59
MLGNWSF DY+K +A A E LT+ P + LY + F GSD L D E L++W
Sbjct: 91 MLGNWSFGDYFKEEAISWAWELLTEVYKISP-ENLYVSVFEGSDDRDDLGLDTEALELWK 149
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR----VNADRNDLI 115
++ VP + I K NFWEMG GPCG SEIH D++ E A VN D ++
Sbjct: 150 KI-VPEERIIYGNKKDNFWEMGDQGPCGPCSEIHIDIRSEEEKAKTPGRDLVNMDHPQVV 208
Query: 116 EIWNIVFISHKR 127
EIWN+VF+ + R
Sbjct: 209 EIWNLVFMQYNR 220
>sp|P61701|SYA_GEOSL Alanine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573
/ DSM 12127 / PCA) GN=alaS PE=3 SV=1
Length = 875
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 78/141 (55%), Gaps = 18/141 (12%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIW-L 59
MLGN+SF DY+K++A A EFLTK + L DRLY T + D+E DIW L
Sbjct: 91 MLGNFSFGDYFKKEAIAFAWEFLTKD-LGLDKDRLYVTVYTD--------DDEAADIWHL 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMK-----GEPSSALARVNADRNDL 114
+ GVPR+ I + G K NFW MG TGPCG SEI +D G P A V D +
Sbjct: 142 QEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGPEVGCGSPDCA---VGCDCDRY 198
Query: 115 IEIWNIVFISHKRVSADTIVP 135
+EIWN VF+ R + + P
Sbjct: 199 MEIWNNVFMQFNRSADGVLTP 219
>sp|Q2IG40|SYA_ANADE Alanine--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=alaS PE=3 SV=1
Length = 905
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
M+GN+SF DY+K DA A E +T P + + DRL T F G LP DEE ++W
Sbjct: 94 MMGNFSFGDYFKADAIAWAWELVTSPAWLGIAKDRLAATVFAGEGT--LPWDEEAFELWK 151
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR-------VNADRN 112
GVP + I K G K NFW MG TGPCG SE+HY + A + V D +
Sbjct: 152 AQGVPVERIHKLGAKDNFWAMGDTGPCGPCSELHYFQGNDVPCAEEQAGRKCQGVACDCD 211
Query: 113 DLIEIWNIVFISHKRVSADTIVP 135
+EIWN+VF+ +R + P
Sbjct: 212 RWLEIWNLVFMQFERGQDGGLTP 234
>sp|A1AXE0|SYA_RUTMC Alanine--tRNA ligase OS=Ruthia magnifica subsp. Calyptogena
magnifica GN=alaS PE=3 SV=1
Length = 865
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 19/128 (14%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+KR+A A EFLTK ++LP ++L+ + F D+E +IW+
Sbjct: 91 MLGNFSFGDYFKREAIYYAWEFLTKE-LNLPKEKLWVSVFEE--------DDEAENIWIN 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-----MKGEPSSALARVNADRNDL 114
E+G P++ I + G K NFW+MG TGPCG SSEI YD G P A + D +
Sbjct: 142 EIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGEHIAGGPPGHA----DEDGDRY 197
Query: 115 IEIWNIVF 122
IEIWN+VF
Sbjct: 198 IEIWNLVF 205
>sp|Q11V49|SYA_CYTH3 Alanine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469) GN=alaS PE=3 SV=1
Length = 877
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/131 (43%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DY+K +A + E LT LP DRLY T F G D+ L D E + W +
Sbjct: 91 MLGNWSFGDYFKEEAIAWSWELLTSV-YKLPKDRLYVTIFEGDDKEKLARDTEAYNFWKK 149
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPS----SALARVNADRNDLIE 116
+ D I K NFWEMG GPCG SEIH D++ + VN D ++E
Sbjct: 150 W-IAEDRILLGNKKDNFWEMGEQGPCGPCSEIHVDLRTDEEVKAVDGKTLVNNDHPQVVE 208
Query: 117 IWNIVFISHKR 127
IWN VFI R
Sbjct: 209 IWNNVFIQFNR 219
>sp|A9WCR2|SYA_CHLAA Alanine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=alaS PE=3 SV=1
Length = 894
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGN+SF DY+K +A +A + LT+ LP++RL+FT F G D+ +P D+E +W+
Sbjct: 94 MLGNFSFGDYFKAEAIALAWKLLTEE-FKLPVERLWFTVFAGDDE--VPPDDEAAALWIA 150
Query: 61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR-VNADRNDLIEIWN 119
G + + G K NFW MG TGPCG SEI + + S A VN+D + +EIWN
Sbjct: 151 QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEITMYIGDDLSQMRAEGVNSDDPNYVEIWN 210
Query: 120 IVFISHKRVS 129
VF+ + R +
Sbjct: 211 NVFMQYDRAT 220
>sp|Q31F91|SYA_THICR Alanine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=alaS PE=3 SV=1
Length = 864
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+KR+A + A FLT+ + LP ++L+ T F D E DIWL
Sbjct: 91 MLGNFSFGDYFKREAIQYAWTFLTEE-LGLPEEKLWITVFEE--------DREAEDIWLK 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYD-----MKGEPSSALARVNADRNDL 114
E+GV + + G K NFW MG TGPCG SEI YD G P S + D +
Sbjct: 142 EMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGADVAGGPPGSP----DEDGDRY 197
Query: 115 IEIWNIVFISHKRVSADTIVP 135
IEIWN+VF+ R T+ P
Sbjct: 198 IEIWNLVFMQFDRSEDGTLTP 218
>sp|B0TZY8|SYA_FRAP2 Alanine--tRNA ligase OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=alaS PE=3 SV=1
Length = 865
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 11/135 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+K+DA A EFLTK + LP+++L+ T + D+E D+W
Sbjct: 92 MLGNFSFGDYFKKDAISFAWEFLTKE-IKLPVEKLWVTIYA--------TDDEAFDVWHN 142
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARV-NADRNDLIEIW 118
+G+P++ I + NFW MG TGPCG +EI YD + + L + D + IEIW
Sbjct: 143 HIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHGEDVAGGLPGTPDEDGDRYIEIW 202
Query: 119 NIVFISHKRVSADTI 133
NIVF+ R + T+
Sbjct: 203 NIVFMQFNRHADGTV 217
>sp|Q30YS5|SYA_DESDG Alanine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
GN=alaS PE=3 SV=1
Length = 880
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGN+SF DY+K DA R A F+T+ + LP ++LY T + D+E +W
Sbjct: 92 MLGNFSFGDYFKEDAIRFAWSFITEE-LKLPKEKLYITIYRD--------DDEAEKLWQS 142
Query: 61 L-GVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY----DMKGEPSSALARVNADRNDLI 115
+ GVP + I + G K NFW MG TGPCG SEIH DM P + + + DR +
Sbjct: 143 VAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQGADMACGPDCGIGKCDCDR--FL 200
Query: 116 EIWNIVFISHKRVSADTIVP 135
EIWN+VF+ + + T P
Sbjct: 201 EIWNLVFMQYDQAPDGTRTP 220
>sp|Q39Z77|SYA_GEOMG Alanine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=alaS PE=3 SV=1
Length = 876
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 77/138 (55%), Gaps = 12/138 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWL- 59
MLGN+SF DY+K++A A EFLTK + L DRLY T + D+E DIW
Sbjct: 91 MLGNFSFGDYFKKEAIAFAWEFLTKD-LGLDKDRLYVTVYTD--------DDEAADIWHH 141
Query: 60 ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEP--SSALARVNADRNDLIEI 117
+ GVPR+ I + G K NFW MG TGPCG SEI +D E S V D + +EI
Sbjct: 142 QEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGPEVGCGSPDCTVGCDCDRYMEI 201
Query: 118 WNIVFISHKRVSADTIVP 135
WN VF+ R + T+ P
Sbjct: 202 WNNVFMQFNRSADGTMTP 219
>sp|Q3ATN3|SYA_CHLCH Alanine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=alaS PE=3 SV=1
Length = 886
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 60/136 (44%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
MLGNWSF DYYK +A A E T LP +RLY T + D+E+ IW E
Sbjct: 91 MLGNWSFGDYYKLEAITWAWELFTVV-WKLPKERLYATVYQD--------DDESFQIWKE 141
Query: 61 -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
+ DHI + G K NFWEMG TGPCG SEIH D+ + S VN +IE+WN
Sbjct: 142 QTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTPD-GSGKELVNVGDYRVIELWN 200
Query: 120 IVFISHKRVSADTIVP 135
+VFI + R S + P
Sbjct: 201 LVFIQYNRQSDGHLEP 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,271,638
Number of Sequences: 539616
Number of extensions: 2338490
Number of successful extensions: 5593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3680
Number of HSP's gapped (non-prelim): 702
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)