Query psy6338
Match_columns 135
No_of_seqs 121 out of 1045
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:50:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy0_A Alanyl-tRNA synthetase; 100.0 5.1E-66 1.7E-70 448.8 8.2 126 1-135 92-228 (441)
2 1yfs_A Alanyl-tRNA synthetase; 100.0 7.1E-65 2.4E-69 443.8 3.1 118 1-135 93-211 (465)
3 2zze_A Alanyl-tRNA synthetase; 100.0 1.1E-40 3.6E-45 304.6 0.7 77 1-135 147-241 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 4.1E-36 1.4E-40 274.0 -0.6 76 1-134 147-227 (739)
5 4dh4_A MIF; trimer, isomerase; 87.5 0.22 7.5E-06 34.3 1.6 30 11-41 72-101 (114)
6 3b64_A Macrophage migration in 85.6 0.34 1.2E-05 33.1 1.8 30 11-41 72-101 (112)
7 3fwu_A Macrophage migration in 84.7 0.39 1.3E-05 34.6 1.8 30 11-41 93-122 (133)
8 3djh_A Macrophage migration in 84.1 0.42 1.4E-05 33.0 1.7 29 12-41 72-100 (114)
9 3kan_A D-dopachrome tautomeras 83.2 0.47 1.6E-05 33.2 1.6 29 12-41 73-101 (117)
10 1hfo_A Migration inhibitory fa 83.0 0.48 1.6E-05 32.2 1.6 30 11-41 71-100 (113)
11 2xcz_A Possible ATLS1-like lig 83.0 0.48 1.6E-05 32.4 1.6 30 11-41 72-101 (115)
12 2wkb_A Macrophage migration in 82.5 0.55 1.9E-05 32.9 1.8 30 11-41 72-101 (125)
13 1uiz_A MIF, macrophage migrati 82.0 0.55 1.9E-05 32.1 1.6 30 11-41 72-101 (115)
14 2os5_A Acemif; macrophage migr 81.9 0.55 1.9E-05 32.4 1.6 30 11-41 72-101 (119)
15 3fwt_A Macrophage migration in 81.8 0.57 2E-05 33.7 1.7 29 12-41 94-122 (133)
16 3t5s_A Gilaa.00834.A, macropha 80.5 0.59 2E-05 33.7 1.4 29 12-41 94-122 (135)
17 3r8s_F 50S ribosomal protein L 76.9 0.65 2.2E-05 35.8 0.7 16 49-64 160-175 (177)
18 3abf_A 4-oxalocrotonate tautom 76.8 1.4 4.9E-05 26.5 2.1 29 12-41 17-45 (64)
19 2opa_A Probable tautomerase YW 76.5 1 3.6E-05 26.9 1.4 30 11-41 15-44 (61)
20 1otf_A 4-oxalocrotonate tautom 76.2 1.1 3.6E-05 26.9 1.4 30 11-41 15-44 (62)
21 1mww_A Hypothetical protein HI 68.3 2.1 7.1E-05 29.7 1.6 30 11-41 74-103 (128)
22 2aal_A Malonate semialdehyde d 65.5 2.6 8.8E-05 29.4 1.6 30 11-41 80-109 (131)
23 1gyx_A YDCE, B1461, hypothetic 61.4 3.3 0.00011 26.4 1.4 42 11-60 16-57 (76)
24 4gyx_A Type III collagen fragm 61.3 3.3 0.00011 23.4 1.2 10 81-90 19-28 (31)
25 3m20_A 4-oxalocrotonate tautom 60.9 5.3 0.00018 24.4 2.3 30 11-41 14-43 (62)
26 2x4k_A 4-oxalocrotonate tautom 60.7 3.6 0.00012 24.2 1.4 29 12-41 19-47 (63)
27 3mb2_A 4-oxalocrotonate tautom 60.2 3.8 0.00013 25.7 1.6 29 12-41 17-45 (72)
28 3m21_A Probable tautomerase HP 57.1 4.4 0.00015 25.0 1.4 30 11-41 18-47 (67)
29 3ry0_A Putative tautomerase; o 50.3 6.7 0.00023 24.0 1.4 29 12-41 16-44 (65)
30 3n4h_A Putative tautomerase; C 49.7 6.7 0.00023 27.8 1.6 30 11-41 77-106 (148)
31 3ej9_A Alpha-subunit of trans- 44.7 8.9 0.00031 24.5 1.4 30 11-41 16-45 (76)
32 1apy_A Aspartylglucosaminidase 39.9 44 0.0015 25.1 4.8 34 50-90 124-160 (162)
33 2arh_A Hypothetical protein AQ 39.5 21 0.00073 28.2 3.1 47 10-72 79-125 (203)
34 3fhk_A UPF0403 protein YPHP; d 37.9 34 0.0012 25.8 3.9 27 32-66 78-106 (147)
35 3mlc_A FG41 malonate semialdeh 33.9 34 0.0012 24.2 3.2 29 11-41 80-108 (136)
36 3shp_A Putative acetyltransfer 27.3 59 0.002 22.3 3.5 50 9-69 99-148 (176)
37 2qgv_A Hydrogenase-1 operon pr 26.9 19 0.00064 26.2 0.8 13 76-92 40-54 (140)
38 3r9f_A MCCE protein; microcin 25.0 1.2E+02 0.0042 20.0 4.7 46 13-69 122-167 (188)
39 3fbu_A Acetyltransferase, GNAT 23.9 1E+02 0.0035 19.9 4.1 46 13-69 101-146 (168)
40 4i4d_A Peptide synthetase NRPS 22.0 57 0.002 20.8 2.4 23 54-81 21-44 (93)
41 3l8h_A Putative haloacid dehal 21.9 1.4E+02 0.0046 20.3 4.5 56 17-74 70-127 (179)
42 2gpj_A Siderophore-interacting 21.8 36 0.0012 25.7 1.6 26 53-82 205-231 (252)
43 2vzy_A RV0802C; transferase, G 21.3 1.3E+02 0.0044 20.8 4.4 47 13-70 124-170 (218)
44 1nsl_A Probable acetyltransfer 20.5 1.3E+02 0.0044 19.6 4.0 44 13-67 112-155 (184)
No 1
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=5.1e-66 Score=448.75 Aligned_cols=126 Identities=44% Similarity=0.808 Sum_probs=116.4
Q ss_pred CCCccccccccHHHHHHHHHHhhc--CCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHh-cCCCCCCeeecC-----
Q psy6338 1 MLGNWSFNDYYKRDACRMALEFLT--KPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE-LGVPRDHIKKEG----- 72 (135)
Q Consensus 1 MLGNfSfGdYfK~eAi~~awefLT--~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~-~gv~~~rI~~~~----- 72 (135)
||||||||||||+|||+||||||| ++ ||||++|||||||. .|+||++||++ +|||++||++++
T Consensus 92 MLGNfSFGDYFK~eAI~~Awe~LT~~~~-lgl~~erL~vTvf~--------~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~~ 162 (441)
T 3hy0_A 92 MLGNFSFGDYFKLDAILFAWLLLTSEKW-FALPKERLWVTVYE--------SDDEAYEIWEKEVGIPRERIIRIGDNKGA 162 (441)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHCTTT-TCCCGGGEEEEEET--------TCHHHHHHHHHTTCCCGGGEEEECSTTSB
T ss_pred eccccccchhhHHHHHHHHHHHhCCCCc-cCCCHHHeEEEEeC--------CCHHHHHHHHHccCCCHHHeeecCccccc
Confidence 999999999999999999999999 66 99999999999997 49999999998 799999999999
Q ss_pred --CccCccCCCCCCCCCCceeEEeecCCCCCc-ccccCCCCCCcEEEEeeccccccccCCCCccCC
Q psy6338 73 --MKCNFWEMGSTGPCGYSSEIHYDMKGEPSS-ALARVNADRNDLIEIWNIVFISHKRVSADTIVP 135 (135)
Q Consensus 73 --~~dNfW~~G~~GPCGPcSEI~yd~~~~~~~-~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~p 135 (135)
.+||||+||+|||||||||||||+|+...+ +.+.++++++|||||||||||||+|+++|+|+|
T Consensus 163 ~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 163 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp TTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 899999999999999999999999865322 234678999999999999999999999999865
No 2
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=7.1e-65 Score=443.78 Aligned_cols=118 Identities=43% Similarity=0.836 Sum_probs=111.5
Q ss_pred CCCccccccccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHh-cCCCCCCeeecCCccCccC
Q psy6338 1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE-LGVPRDHIKKEGMKCNFWE 79 (135)
Q Consensus 1 MLGNfSfGdYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~-~gv~~~rI~~~~~~dNfW~ 79 (135)
||||||||||||+|||+|||||||++ |||||+|||||||. .|+||++||++ +|||++||+++|.+||||+
T Consensus 93 MLGNfSFGDYFK~eAI~~AwE~LT~~-lgl~~~rL~vTv~~--------~D~Ea~~iW~~~~G~p~~rI~~~g~~dNFW~ 163 (465)
T 1yfs_A 93 MLGNFSFGDYFKKEAIEYAWEFVTEV-LKLPKEKLYVSVYK--------DDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ 163 (465)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHHT-SCCCGGGEEEEEET--------TCHHHHHHHHTTTCCCGGGEEEECHHHHEEE
T ss_pred eccccchhhhhHHHHHHHHHHHHHhh-cCCCHHHeEEEEeC--------CCHHHHHHHHHhcCCCHHHeeeCCCcCCccc
Confidence 99999999999999999999999999 99999999999997 59999999998 8999999999999999999
Q ss_pred CCCCCCCCCceeEEeecCCCCCcccccCCCCCCcEEEEeeccccccccCCCCccCC
Q psy6338 80 MGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP 135 (135)
Q Consensus 80 ~G~~GPCGPcSEI~yd~~~~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~p 135 (135)
||+|||||||||||||+|++.. +++|||||||||||||+|+++|+|.|
T Consensus 164 mG~tGPCGPCsEI~yD~g~~~~--------~~~r~lEIWNlVFmQy~r~~~g~l~p 211 (465)
T 1yfs_A 164 MGDVGPCGPSSEIYVDRGEEYE--------GDERYLEIWNLVFMQYNRDENGVLTP 211 (465)
T ss_dssp SSSSEEEEEEEEEEEECCTTSC--------HHHHEEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCcCCCCCeEEEEccCCCCC--------CCCCEEEeeeeeeeEEEecCCCcccc
Confidence 9999999999999999976522 27899999999999999999999875
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.1e-40 Score=304.61 Aligned_cols=77 Identities=27% Similarity=0.539 Sum_probs=70.3
Q ss_pred CCCccccc-----cccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCeeecCCcc
Q psy6338 1 MLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKC 75 (135)
Q Consensus 1 MLGNfSfG-----dYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~~~~~~d 75 (135)
|||||||| ||||+|||+|||||||++ ||||++|| ++ +|
T Consensus 147 MlGnfSFg~~~~~dYfK~eaI~~awe~lT~~-~gl~~~ri---------------------------------~~---~d 189 (752)
T 2zze_A 147 MMAHHAFNYPGXPIYWMDETVELAFEFFTKE-LXMXPEDI---------------------------------TF---KE 189 (752)
T ss_dssp EEEEEEEECTTCCCCCHHHHHHHHHHHHHHT-SCCCGGGE---------------------------------EE---EE
T ss_pred hCccceeCCCchHHHHHHHHHHHHHHHHhhh-hhcchhhe---------------------------------ee---cc
Confidence 99999999 999999999999999999 99988875 22 78
Q ss_pred CccCCCCCCCCCCceeEEeecCCCCCcccccCCCCCCcEEEEeecccccc-------------ccCCCCccCC
Q psy6338 76 NFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISH-------------KRVSADTIVP 135 (135)
Q Consensus 76 NfW~~G~~GPCGPcSEI~yd~~~~~~~~~~~~~~~~~r~lEIWNlVFmqy-------------~r~~dG~l~p 135 (135)
|||+|| |||||||||||| .||||||||||| +| ++|+|+|
T Consensus 190 NfW~~G--GpcGPcsEI~~d------------------glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~ 241 (752)
T 2zze_A 190 NPWAGG--GNAGPAFEVLYR------------------GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIP 241 (752)
T ss_dssp CCEEET--TEEECEEEEEET------------------TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEE
T ss_pred CcccCC--CCCCCceeEEEC------------------CEeeeeeeeeeeccccccccccchhcc-cCCeeee
Confidence 999999 999999999997 199999999999 88 5888764
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.1e-36 Score=274.04 Aligned_cols=76 Identities=24% Similarity=0.386 Sum_probs=69.8
Q ss_pred CCCccccc-----cccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCeeecCCcc
Q psy6338 1 MLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKC 75 (135)
Q Consensus 1 MLGNfSfG-----dYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~~~~~~d 75 (135)
|||||||| ||||+|||+|||||| ++ ||||++| |++ +|
T Consensus 147 Mlgn~sFg~~~~~dYfK~eai~~~~e~l-~~-~g~~~~~---------------------------------i~~---~d 188 (739)
T 2ztg_A 147 MMAHHAFNYPGKEIYWKNETVAYCTELL-NE-LGVKKED---------------------------------IVY---KE 188 (739)
T ss_dssp EEEEEEEEBTTBCSCCHHHHHHHHHHHH-HH-HTCCGGG---------------------------------CEE---EE
T ss_pred ccCccccCCCccccchHHHHHHHHHHHH-HH-hCCCHHH---------------------------------eee---cc
Confidence 99999999 999999999999999 77 8998884 443 79
Q ss_pred CccCCCCCCCCCCceeEEeecCCCCCcccccCCCCCCcEEEEeeccccccccCCCCccC
Q psy6338 76 NFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIV 134 (135)
Q Consensus 76 NfW~~G~~GPCGPcSEI~yd~~~~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~ 134 (135)
|||+|| |||||||||||| .|||||||||||||+++|+|+
T Consensus 189 nfW~~g--Gp~Gpc~Ei~~d------------------g~EiwnlVfmq~~r~~~g~~~ 227 (739)
T 2ztg_A 189 EPWAGG--GNAGPCLEAIVG------------------GLEVATLVFMNLEEHPEGDIE 227 (739)
T ss_dssp EEEEET--TEEEEEEEEEET------------------TEEEEEEEEEEEEECTTCCEE
T ss_pred CcccCC--CCCCCeeEEEEC------------------CEEeeeeeeEEeeecCCCcee
Confidence 999999 999999999997 199999999999999999874
No 5
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=87.45 E-value=0.22 Score=34.33 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|++-++-.-++|.++ ||++++|+||+++.
T Consensus 72 ~~~~l~~~i~~~l~~~-Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERH-LGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccEEEEEEe
Confidence 3566677778899988 99999999999984
No 6
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=85.63 E-value=0.34 Score=33.08 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKE-CGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-hCcCcceEEEEEEE
Confidence 5677788888899888 99999999999984
No 7
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=84.71 E-value=0.39 Score=34.62 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|++-.+---++|.+. |||+++|+||.++.
T Consensus 93 ~n~~~s~~i~~~l~~~-LgI~~~riyI~f~d 122 (133)
T 3fwu_A 93 EPEKVTSIVTAAITKE-CGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-hCcChhhEEEEEEE
Confidence 4555566667889988 99999999999984
No 8
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=84.13 E-value=0.42 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.561 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|++-.+---++|.+. ||++++|+||.++.
T Consensus 72 n~~~s~~i~~~l~~~-Lgi~~~riyI~f~d 100 (114)
T 3djh_A 72 NRSYSKLLCGLLAER-LRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcCcceEEEEEEE
Confidence 444455566788888 99999999999984
No 9
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=83.21 E-value=0.47 Score=33.18 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|+.-.+---++|.++ ||++++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~-Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKE-LALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHH-HTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcCcCeEEEEEEE
Confidence 344455556788888 99999999999984
No 10
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=83.02 E-value=0.48 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 71 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTK-LGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcCeEEEEEEE
Confidence 3666677778888888 99999999999985
No 11
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=82.99 E-value=0.48 Score=32.39 Aligned_cols=30 Identities=13% Similarity=0.440 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQN-LGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 4667788888899888 99999999999985
No 12
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=82.50 E-value=0.55 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNH-LSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHH-HCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-hCcCcceEEEEEEE
Confidence 5777788888999988 99999999999985
No 13
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=82.02 E-value=0.55 Score=32.08 Aligned_cols=30 Identities=23% Similarity=0.650 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTKQ-LNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcceEEEEEEE
Confidence 3566677778888888 99999999999985
No 14
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=81.95 E-value=0.55 Score=32.42 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-++|.+. ||++++|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~-lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQDT-LKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 3666677778888888 99999999999985
No 15
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=81.82 E-value=0.57 Score=33.65 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|+.-.+-.-++|.+. ||++++|+||.++.
T Consensus 94 n~~~s~~i~~~l~~~-LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKE-CGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcChhhEEEEEEE
Confidence 445555666888888 99999999999984
No 16
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=80.48 E-value=0.59 Score=33.71 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|+.-.+---++|.+. ||++++|+||.++.
T Consensus 94 n~~~s~~i~~~l~~~-Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQH-FKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHH-HCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHh-cccCccEEEEEecc
Confidence 445555666889888 99999999999984
No 17
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=76.94 E-value=0.65 Score=35.84 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHhcCCC
Q psy6338 49 PCDEETLDIWLELGVP 64 (135)
Q Consensus 49 ~~D~Ea~~iW~~~gv~ 64 (135)
..|+||+.+|..+|+|
T Consensus 160 ~td~ea~~LL~~~g~P 175 (177)
T 3r8s_F 160 KSDEEGRALLAAFDFP 175 (177)
T ss_dssp SSHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 4699999999999987
No 18
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=76.81 E-value=1.4 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|++-++-.-+.|.+. +|+|+++++|++..
T Consensus 17 k~~l~~~lt~~l~~~-lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRL-LGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHH-TTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCCCcccEEEEEEE
Confidence 556667777788888 99999999999985
No 19
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=76.47 E-value=1 Score=26.91 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-+.|.+. +|++++++||.+..
T Consensus 15 qk~~l~~~i~~~l~~~-lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKET-TGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcCeEEEEEEE
Confidence 3556667777888888 99999999999985
No 20
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=76.21 E-value=1.1 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|+.-++-.-+.|.+. +|+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~-lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANS-LDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 3566677777888888 99999999999985
No 21
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=68.33 E-value=2.1 Score=29.71 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-+.|.+. +|++++++||++.+
T Consensus 74 qK~~l~~~l~~~l~~~-lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYK-LGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcChhhEEEEEEE
Confidence 3666677777888888 99999999999985
No 22
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=65.49 E-value=2.6 Score=29.43 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
-|+.-++-.-+.|.+. +|++++++||++.+
T Consensus 80 qK~~l~~~l~~~l~~~-lg~~~~~v~I~i~e 109 (131)
T 2aal_A 80 QKVCFYKLLTGALERD-CGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 3666777778888888 99999999999985
No 23
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=61.36 E-value=3.3 Score=26.41 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHh
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~ 60 (135)
.|+.-++-.-+.|.+. +|+++++++|++.+ +++++=+. ++..
T Consensus 16 qk~~L~~~l~~~l~~~-lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRH-LNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHH-hCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 4556666777788888 99999999999996 23444555 6654
No 24
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=61.32 E-value=3.3 Score=23.42 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.2
Q ss_pred CCCCCCCCce
Q psy6338 81 GSTGPCGYSS 90 (135)
Q Consensus 81 G~~GPCGPcS 90 (135)
|++||-|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5677888884
No 25
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=60.88 E-value=5.3 Score=24.38 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|++-++-.-+.|.+. +|+|++.++|++.+
T Consensus 14 qK~~L~~~it~~~~~~-lg~~~~~v~V~i~E 43 (62)
T 3m20_A 14 KKREFVERLTSVAAEI-YGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-hCcCcceEEEEEEE
Confidence 3566666667777777 99999999999985
No 26
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=60.70 E-value=3.6 Score=24.19 Aligned_cols=29 Identities=3% Similarity=-0.051 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|++-++-.-+.|.+. +|+|+++++|.+..
T Consensus 19 k~~l~~~l~~~l~~~-lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKT-TGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHH-HCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 445566666778777 99999999999985
No 27
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=60.23 E-value=3.8 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|++-++-.-+.|.+. +|+|++.++|++.+
T Consensus 17 K~~L~~~it~~l~~~-lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAA-FDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHH-HTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCCCcccEEEEEEE
Confidence 556666677777777 99999999999985
No 28
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=57.12 E-value=4.4 Score=25.02 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|+.-++-.-+.|.+. +|+|++.++|.+.+
T Consensus 18 qK~~l~~~lt~~l~~~-lg~p~~~v~V~i~e 47 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKV-LNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-HCcCcccEEEEEEE
Confidence 3556667777778778 99999999999985
No 29
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=50.29 E-value=6.7 Score=23.96 Aligned_cols=29 Identities=3% Similarity=-0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 12 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 12 K~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
|++-++-.-+.|.+. +|+|++.++|.+.+
T Consensus 16 k~~L~~~it~~~~~~-lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 16 VAALGEALTAAAHET-LGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHH-HCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcCcccEEEEEEE
Confidence 555566666777777 99999999999985
No 30
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=49.68 E-value=6.7 Score=27.85 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|++-++-.-+.|.+. +|++++++||++..
T Consensus 77 qk~~l~~~l~~~l~~~-lgi~~~~v~V~i~E 106 (148)
T 3n4h_A 77 QKEELLLRLTQEIALI-LGIPNEEVWVYITE 106 (148)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcCcEEEEEEE
Confidence 3666777788888888 99999999999985
No 31
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=44.73 E-value=8.9 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|++-++-.-+.|.+. +|+|++.++|.+.+
T Consensus 16 qK~~L~~~it~~l~~~-lg~p~~~v~V~i~E 45 (76)
T 3ej9_A 16 QKRALSAGLLRVISEA-TGEPRENIFFVIRE 45 (76)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-HCcCcccEEEEEEE
Confidence 3555566666777777 99999999999985
No 32
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=39.88 E-value=44 Score=25.11 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=20.6
Q ss_pred CCHHHHHHHHhcCCCCCCeeecCCccCccCCC---CCCCCCCce
Q psy6338 50 CDEETLDIWLELGVPRDHIKKEGMKCNFWEMG---STGPCGYSS 90 (135)
Q Consensus 50 ~D~Ea~~iW~~~gv~~~rI~~~~~~dNfW~~G---~~GPCGPcS 90 (135)
-.+++++.|++.. +-...-|||.-- ++.-|||-.
T Consensus 124 ~t~~~~~~~~~~~-------~~~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 124 STSASQALHSDWL-------ARNCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp CCHHHHHHHHHHH-------HTTSCSCCBCSCBSCTTTCCSCCB
T ss_pred CCHHHHHHHHHHH-------HhccCCCccccCCCCCCCCCCCCC
Confidence 3678888887631 111355999753 245698853
No 33
>2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.46A {Aquifex aeolicus} SCOP: d.108.1.9
Probab=39.47 E-value=21 Score=28.20 Aligned_cols=47 Identities=32% Similarity=0.564 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCeeecC
Q psy6338 10 YYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEG 72 (135)
Q Consensus 10 YfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~~~~ 72 (135)
+|-.++=+.-+.+|.+. +| ||||||+ .|.||+.-= ..|+|+-- .|+|
T Consensus 79 ~~~s~~E~~ly~~ls~~-lg----~lfVEY~---------~D~ET~~~L-~~G~pp~~-TRLG 125 (203)
T 2arh_A 79 FFGSEAERKLYEFLSEH-FG----RIFVEYF---------EDKETTYEL-QKGVPPAL-SRLG 125 (203)
T ss_dssp HTTSHHHHHHHHHHHTT-CS----EEEEECT---------TCHHHHHHH-HTTCCGGG-SHHH
T ss_pred ccCCHHHHHHHHHHHHh-cC----ceEEEEe---------cCHHHHHHH-HcCCCccc-chhH
Confidence 34456666777888776 76 9999999 489998753 45777652 3444
No 34
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=37.89 E-value=34 Score=25.75 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCceEEEEecCCCCCCCCCCHHHHHHHHhc--CCCCC
Q psy6338 32 LDRLYFTYFGGSDQYGLPCDEETLDIWLEL--GVPRD 66 (135)
Q Consensus 32 ~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~--gv~~~ 66 (135)
|++ .||||.| .|.||-+-=++. |.|++
T Consensus 78 PD~-lvTVFAG-------qDkEAt~~aR~yf~~~pPS 106 (147)
T 3fhk_A 78 PDN-TVTVFAG-------QDKEATAKMREYFTGAAPS 106 (147)
T ss_dssp CSE-EEEEETT-------TSHHHHHHHHTTSTTCCCC
T ss_pred CCc-eEEeccC-------CCHHHHHHHHHhcCCCCCC
Confidence 676 5899998 799998887763 55444
No 35
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=33.87 E-value=34 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q psy6338 11 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 41 (135)
Q Consensus 11 fK~eAi~~awefLT~~~lgl~~~rL~vTv~~ 41 (135)
.|+.-++-.-+.| +. +|++++.++|++.+
T Consensus 80 qK~~L~~~it~~l-~~-lg~~~~~v~V~i~E 108 (136)
T 3mlc_A 80 TKQRVFAAITESL-AP-IGVAGSDVFIAITE 108 (136)
T ss_dssp HHHHHHHHHHHHH-TT-TTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHH-HH-cCCCcccEEEEEEE
Confidence 3666677777888 88 99999999999985
No 36
>3shp_A Putative acetyltransferase STHE_0691; PSI-biology, midwest center for structural genomics, MCSG; HET: SRT; 2.21A {Sphaerobacter thermophilus}
Probab=27.30 E-value=59 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCee
Q psy6338 9 DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIK 69 (135)
Q Consensus 9 dYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~ 69 (135)
+|...||+..+.++.-+. +|+ .||+..|+. .-.-|.++-+++|+-.+-+.
T Consensus 99 ~~~G~ea~~~ll~~af~~-~~~--~~i~~~v~~--------~N~~s~~l~ek~GF~~~G~~ 148 (176)
T 3shp_A 99 DVLRAEALELVVPWLRDE-HEL--LVITVEIAA--------DEQRTLAAAEAAGLKAAVRM 148 (176)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCC--SEEEEEEET--------TCHHHHHHHHHTTCEEEEEE
T ss_pred hHhhHHHHHHHHHHHHhh-CCe--EEEEEEEcC--------CCHHHHHHHHHCCCEEEEEe
Confidence 455578877777766554 554 799999996 46789999999997544443
No 37
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=26.92 E-value=19 Score=26.21 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=9.2
Q ss_pred CccCCCCCCC--CCCceeE
Q psy6338 76 NFWEMGSTGP--CGYSSEI 92 (135)
Q Consensus 76 NfW~~G~~GP--CGPcSEI 92 (135)
.|| .+| ||||--|
T Consensus 40 dF~----a~~crCgpCk~i 54 (140)
T 2qgv_A 40 LLS----SDPKRTPEVSDN 54 (140)
T ss_dssp EEC----CCTTTCTTTTHH
T ss_pred EEe----CCcccCCcHHHH
Confidence 577 358 9999644
No 38
>3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity, resistance, A coenzyme A, transferase; HET: COA GSU; 1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A* 3r9g_A*
Probab=24.98 E-value=1.2e+02 Score=20.03 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCee
Q psy6338 13 RDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIK 69 (135)
Q Consensus 13 ~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~ 69 (135)
.++++.+-+.+.+. +| ..+|+++|.. ....|.++.+++|.-...++
T Consensus 122 ~~ll~~~~~~a~~~-~~--~~~i~~~v~~--------~N~~a~~~y~k~GF~~~g~~ 167 (188)
T 3r9f_A 122 TNAINKLIQEYGDS-GV--IKRFVIKCIV--------DNKKSNATALRCGFTLEGVL 167 (188)
T ss_dssp HHHHHHHHHHHHTT-TS--CSEEEEEEET--------TCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHh-cC--eEEEEEEecC--------CCHHHHHHHHHCCCeEEeEe
Confidence 46666666655443 44 5789999996 46689999999997544443
No 39
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=23.90 E-value=1e+02 Score=19.86 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCee
Q psy6338 13 RDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIK 69 (135)
Q Consensus 13 ~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~ 69 (135)
.+++..+-+.+.+. +| ..+|+++|.. ....|.++.+++|.-...++
T Consensus 101 ~~ll~~~~~~a~~~-~~--~~~i~l~v~~--------~N~~a~~~y~k~GF~~~g~~ 146 (168)
T 3fbu_A 101 SEAAQATLKYGFKE-MK--LHRIIATCQP--------ENTPSYRVMEKIGMRREGYF 146 (168)
T ss_dssp HHHHHHHHHHHHHT-SC--CSEEEEEECT--------TCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhh-CC--ceEEEEEecc--------CChHHHHHHHHCCCeEEEEe
Confidence 35566666655444 44 4689999985 46789999999997544333
No 40
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=21.98 E-value=57 Score=20.85 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=17.0
Q ss_pred HHHHHHh-cCCCCCCeeecCCccCccCCC
Q psy6338 54 TLDIWLE-LGVPRDHIKKEGMKCNFWEMG 81 (135)
Q Consensus 54 a~~iW~~-~gv~~~rI~~~~~~dNfW~~G 81 (135)
-.+||.+ +|++ .++..+||.++|
T Consensus 21 l~~i~~~vL~~~-----~i~~~~~Ff~lG 44 (93)
T 4i4d_A 21 IAAIWAETLGRD-----SVGPHEDFAALG 44 (93)
T ss_dssp HHHHHHHHHTCS-----CCCTTCCTTTTT
T ss_pred HHHHHHHHhCCC-----CCCCCCCHHHcC
Confidence 3579997 6763 245689999988
No 41
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=21.90 E-value=1.4e+02 Score=20.26 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCCCCCCCceEEEEecC-CCCCCCCCCHHHHHHHH-hcCCCCCCeeecCCc
Q psy6338 17 RMALEFLTKPPVSLPLDRLYFTYFGG-SDQYGLPCDEETLDIWL-ELGVPRDHIKKEGMK 74 (135)
Q Consensus 17 ~~awefLT~~~lgl~~~rL~vTv~~g-d~~~g~~~D~Ea~~iW~-~~gv~~~rI~~~~~~ 74 (135)
+.+-..|. . +|..-+.++..++.+ +....-+++.+.+..-. ++|+++++++.+|..
T Consensus 70 ~~~~~~l~-~-~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~ 127 (179)
T 3l8h_A 70 DKMHRALA-Q-MGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDS 127 (179)
T ss_dssp HHHHHHHH-H-TTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCTTCEEEESS
T ss_pred HHHHHHHH-h-CCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCC
Confidence 34444443 3 675456666555544 33333567888887666 489999999998754
No 42
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=21.76 E-value=36 Score=25.74 Aligned_cols=26 Identities=15% Similarity=0.544 Sum_probs=20.1
Q ss_pred HHHHHHH-hcCCCCCCeeecCCccCccCCCC
Q psy6338 53 ETLDIWL-ELGVPRDHIKKEGMKCNFWEMGS 82 (135)
Q Consensus 53 Ea~~iW~-~~gv~~~rI~~~~~~dNfW~~G~ 82 (135)
..++..+ +.|+|++||. -+-||..|.
T Consensus 205 av~~~l~~~~G~~~~~i~----~e~fw~~g~ 231 (252)
T 2gpj_A 205 ALRRHFKQAHALPKSHFY----TSSYWKIGC 231 (252)
T ss_dssp HHHHHHHHHCCCCGGGEE----EEEEECTTC
T ss_pred HHHHHHHHhcCCCHHHeE----EEEEcCCCC
Confidence 4566777 6899999997 468998774
No 43
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=21.29 E-value=1.3e+02 Score=20.76 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCeee
Q psy6338 13 RDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKK 70 (135)
Q Consensus 13 ~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~~ 70 (135)
.++++.+-+++.+. +| ..+|+++|+. ....|.++.+++|.-....++
T Consensus 124 ~~ll~~l~~~a~~~-~g--~~~i~~~v~~--------~N~~a~~~y~k~GF~~~g~~~ 170 (218)
T 2vzy_A 124 TEMRAAVLYFAFAE-LE--AQVATSRSFV--------DNPASIAVSRRNGYRDNGLDR 170 (218)
T ss_dssp HHHHHHHHHHHHHT-SC--CSEEEEEEET--------TCHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhh-CC--ceEEEEEecc--------CCHHHHHHHHHCCCEEeeeee
Confidence 45666666655443 44 5789999996 467899999999976555443
No 44
>1nsl_A Probable acetyltransferase; structural genomics, hexamer, alpha-beta, PSI, protein struc initiative, midwest center for structural genomics; 2.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=20.53 E-value=1.3e+02 Score=19.56 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCC
Q psy6338 13 RDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDH 67 (135)
Q Consensus 13 ~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~r 67 (135)
.+++..+-+.+.+. .| ..+|+++|.. ....|.++++++|.-...
T Consensus 112 ~~ll~~~~~~a~~~-~g--~~~i~~~~~~--------~N~~a~~~y~k~Gf~~~~ 155 (184)
T 1nsl_A 112 TAACRKLITYAFEE-LE--LNRVAICAAV--------GNEKSRAVPERIGFLEEG 155 (184)
T ss_dssp HHHHHHHHHHHHHT-SC--CSEEEEEEET--------TCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHh-cC--cEEEEEEEec--------CCHHHHHHHHHcCCEEEE
Confidence 45666666665333 44 4689999995 467899999999975433
Done!