RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6338
         (135 letters)



>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 236

 Score = 83.1 bits (205), Expect = 3e-21
 Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 18/136 (13%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGN+SF DY+K++A   A EF+T+  + LP ++LY + +          DEE   IW E
Sbjct: 92  MLGNFSFGDYFKKEAIEYAWEFVTEV-LKLPKEKLYVSVY--------KDDEEAYRIWNE 142

Query: 61  -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
            +G+P + I + G + NFW+MG  GPCG SSEI+ D                   +EIWN
Sbjct: 143 HIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRG--------EEYEGDERYLEIWN 194

Query: 120 IVFISHKRVSADTIVP 135
           +VF+ + R     + P
Sbjct: 195 LVFMQYNRDENGVLTP 210


>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 217

 Score = 26.6 bits (58), Expect = 1.0
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 65  RDHIKKEGMK----CNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
            + I+KE        N +E G  G    +S +       P     ++ A      + ++ 
Sbjct: 111 LETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSS 170


>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
          1085]}
          Length = 112

 Score = 24.3 bits (52), Expect = 3.4
 Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 36 YFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMK 74
          Y   +      GL   E  L  +++   P+  + ++   
Sbjct: 48 YSESYTEMKAKGLTWTEANLAAYVK--NPKAFVLEKSGD 84


>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 23.9 bits (51), Expect = 5.1
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 37 FTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGM 73
          ++Y   + +  +  DE  +  +L    P+ +I    M
Sbjct: 51 YSYTDANIKKNVLWDENNMSEYLT--NPKKYIPGTKM 85


>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 24.1 bits (51), Expect = 8.2
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 9/113 (7%)

Query: 2   LGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLEL 61
           LG  +F +          L++         + +        ++ Y +P   ET  +    
Sbjct: 18  LGTMTFGEQNSEADAHAQLDYA--------VAQGI-NLIDVAEMYPVPPRPETQGLTETY 68

Query: 62  GVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDL 114
                       K       S         I  D   +  +    ++     L
Sbjct: 69  VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121


>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum
          [TaxId: 34018]}
          Length = 118

 Score = 23.5 bits (50), Expect = 8.6
 Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)

Query: 36 YFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTG 84
          Y      + + GL    E +  +L    P   ++K        E     
Sbjct: 47 YSAINHAAGEAGLHWTPENIIAYLPD--PNAFLRKFLADAGHAEQAKGS 93


>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 218

 Score = 23.8 bits (51), Expect = 8.8
 Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 18/136 (13%)

Query: 5   WSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVP 64
           W   +Y  +DA  +   F +          L F    G++         +   +  L + 
Sbjct: 50  WLKPEYSIKDAMTIEWTFRSFGFRGSTKGGLAFWLKQGNEGDSTELFGGSSKKFNGLMIL 109

Query: 65  RDHIKKEG-----------MKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRND 113
                K G              +         C       Y     PS+     N   N 
Sbjct: 110 LRLDDKLGESVTAYLNDGTKDLDIESSPYFASC----LFQYQDSMVPSTLRLTYNPLDNH 165

Query: 114 LIEI---WNIVFISHK 126
           L+++     + F + K
Sbjct: 166 LLKLQMDNRVCFQTRK 181


>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thermotoga maritima [TaxId: 2336]}
          Length = 362

 Score = 23.9 bits (51), Expect = 9.0
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 37  FTYFGGS--DQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY 94
           F + GG   D++G P  EET  I LE     D I    +    W+            +  
Sbjct: 46  FGHIGGDAIDRFGEPLPEETKKICLE----ADAIFLGSVGGPKWDDLPPEKRPEIGGLLA 101

Query: 95  DMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP 135
             K     A  R       L+ +  +             V 
Sbjct: 102 LRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVR 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,683
Number of extensions: 25235
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 11
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)