BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6339
(925 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 263/485 (54%), Gaps = 73/485 (15%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L + IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 3 LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 61
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ +
Sbjct: 62 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 120
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP ++LY + + DEE IW E +G+P + I + G + NFW+MG GPCG
Sbjct: 121 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 172
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +GE R +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 173 SSEIYVD-RGEEYEGDER-------YLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ K S ++ D+ PL++ E+VSG K YG F T D + R+++D+ R I
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 277
Query: 311 TVALADNMFPDATAK---LRNVVRDAL-----LISEDVFKVKQGKLVKELSYNIAEILGD 362
T A++D + P + +R ++R A+ L E+ F K LV +I+ +
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLV-------VDIMKE 330
Query: 363 VYPEIQDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
YPE++ S ++ ++ GEE R L+ G+
Sbjct: 331 PYPELELSREFVKGIVKGEEKRFIKTLKA-----------------------------GM 361
Query: 422 KYLTK--QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479
+Y+ + Q A + +SG FT YDTYG ++I E+A K L + E F+ +L E
Sbjct: 362 EYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQ 421
Query: 480 KERSK 484
+ER++
Sbjct: 422 RERAR 426
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 30 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K++A A EF+T+ + LP ++LY +
Sbjct: 90 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVS 129
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 263/485 (54%), Gaps = 73/485 (15%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L + IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 2 LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ +
Sbjct: 61 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP ++LY + + DEE IW E +G+P + I + G + NFW+MG GPCG
Sbjct: 120 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 171
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +GE R +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 172 SSEIYVD-RGEEYEGDER-------YLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ K S ++ D+ PL++ E+VSG K YG F T D + R+++D+ R I
Sbjct: 224 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 276
Query: 311 TVALADNMFPDATAK---LRNVVRDAL-----LISEDVFKVKQGKLVKELSYNIAEILGD 362
T A++D + P + +R ++R A+ L E+ F K LV +I+ +
Sbjct: 277 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLV-------VDIMKE 329
Query: 363 VYPEIQDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
YPE++ S ++ ++ GEE R L+ G+
Sbjct: 330 PYPELELSREFVKGIVKGEEKRFIKTLKA-----------------------------GM 360
Query: 422 KYLTK--QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479
+Y+ + Q A + +SG FT YDTYG ++I E+A K L + E F+ +L E
Sbjct: 361 EYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQ 420
Query: 480 KERSK 484
+ER++
Sbjct: 421 RERAR 425
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 29 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K++A A EF+T+ + LP ++LY +
Sbjct: 89 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVS 128
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 252/481 (52%), Gaps = 65/481 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L + IR FL +F +GHT VKS+P+VP D ++ FVN+G FKNVFLGL PY R
Sbjct: 3 LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKR 61
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFE LGN+SF DY+K++A A EF+T+ +
Sbjct: 62 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEV-LK 120
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP ++LY + + DEE IW E +G+P + I + G + NFW+ G GPCG
Sbjct: 121 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGP 172
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +GE R +EIWN+VF + R + PL IDTG G E
Sbjct: 173 SSEIYVD-RGEEYEGDER-------YLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLE 224
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ K S ++ D+ PL++ E+VSG K YG F T D + R+++D+ R I
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 277
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV----YPE 366
T A++D + P R V +L F K G + Y +++ D+ YPE
Sbjct: 278 TFAISDGVIPSNEG--RGYVIRRILRRAXRFGYKLG-IENPFLYKGVDLVVDIXKEPYPE 334
Query: 367 IQDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLT 425
++ S ++ ++ GEE R L+ G +Y+
Sbjct: 335 LELSREFVKGIVKGEEKRFIKTLKA-----------------------------GXEYIQ 365
Query: 426 K--QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERS 483
+ Q A + +SG FT YDTYG ++I E+A K L + E F+ +L E +ER+
Sbjct: 366 EVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERA 425
Query: 484 K 484
+
Sbjct: 426 R 426
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+G FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 30 VPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFE LGN+SF DY+K++A A EF+T+ + LP ++LY +
Sbjct: 90 FFEXLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVS 129
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 179/497 (36%), Positives = 259/497 (52%), Gaps = 82/497 (16%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 TAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSL 132
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA A LT +L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMGS 184
P +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 PKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGD 174
Query: 185 TGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLS 239
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 TGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPLP 230
Query: 240 KNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-DT 298
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 KPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSNK 278
Query: 299 SYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KEL 352
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKETF 329
Query: 353 SYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIM 412
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFART 369
Query: 413 EEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF 472
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + + F
Sbjct: 370 LERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGF 424
Query: 473 EQKLNELKERSKAKAAS 489
E + E +R +A+ AS
Sbjct: 425 EAAMEE--QRRRAREAS 439
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 29 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA A LT +LP +RL+ T
Sbjct: 89 FFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVT 130
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/497 (35%), Positives = 258/497 (51%), Gaps = 82/497 (16%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 TAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSL 132
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA A LT +L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMGS 184
P +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 PKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGD 174
Query: 185 TGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLS 239
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 TGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPLP 230
Query: 240 KNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-DT 298
K +DT +G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 KPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSNK 278
Query: 299 SYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KEL 352
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKETF 329
Query: 353 SYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIM 412
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFART 369
Query: 413 EEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF 472
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + + F
Sbjct: 370 LERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGF 424
Query: 473 EQKLNELKERSKAKAAS 489
E + E +R +A+ AS
Sbjct: 425 EAAMEE--QRRRAREAS 439
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 29 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA A LT +LP +RL+ T
Sbjct: 89 FFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVT 130
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 181/848 (21%), Positives = 322/848 (37%), Gaps = 228/848 (26%)
Query: 16 SIRSSFLDYFCNTQ--GHTLVKSSPIVPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRV 72
+R FL +F + H VK P++P D + V + + F+ V G P +
Sbjct: 61 EMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 120
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTK 127
SQ +R D+ G H T FEM+ + +FN Y+ + +A EF TK
Sbjct: 121 VISQPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 176
Query: 128 PPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGP 187
P D + K N W G G
Sbjct: 177 ELKMKPEDITF-------------------------------------KENPWAGG--GN 197
Query: 188 CGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKR------------VSADTI 235
G + E+ Y +G +E+ +VF+ +K+ + +
Sbjct: 198 AGPAFEVLY--RG----------------LEVATLVFMQYKKAPENAPQDQVVVIKGEKY 239
Query: 236 VPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNR-- 293
+P+ +DTG G ERLV + Q + YD L ++E ++K++G + N
Sbjct: 240 IPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGY-VVEPLKKMAGIEKIDEKILMENSRL 298
Query: 294 ---------------------------TDLDTSYR------MLSDYSRMITVALADNMFP 320
+L+ + R ++D+++ +T LAD + P
Sbjct: 299 AGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVP 358
Query: 321 DATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIA---EILGDVYPEIQDSINKI-QL 376
+ K + R LLI + + +++ L LS +A + L +PE ++ + I ++
Sbjct: 359 -SNVKAGYLAR--LLIRKSIRHLRELGLEVPLSEIVALHIKELHKTFPEFKEMEDIILEM 415
Query: 377 ILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITE 436
I EE + + LR+ + LV+ + + L K+ I E
Sbjct: 416 IELEEKKYAETLRRGS-----DLVRRE-----------------IAKLKKK-----GIKE 448
Query: 437 ISGDMAFTLYDTYGLSKNIIQELAAAKKLTL-CHEAFEQKLNELKERSKAKAASNVPDID 495
I + T Y+++GL+ I++E+A + + + + F + + ER+K + + D +
Sbjct: 449 IPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFE 508
Query: 496 LMDLKHFPVTXXXXXXXXXXXTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGA 555
L LK P T Y P + D +R +
Sbjct: 509 L--LKDLP------------DTRRLYYEDPFMKE-------------FDAKVLRVIKD-- 539
Query: 556 SIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGK-VEIGELASLEGK 614
WV I D T Y GGQ D GV + NG+ V++ + +
Sbjct: 540 -----------WV--ILDATAFYPEGGGQPYDTGVLIV------NGREVKVTNVQKVGKV 580
Query: 615 IVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRV 673
I+H +FK G+ ++D + R+ MR HT +H+L AL RVL +Q ++
Sbjct: 581 IIHKVEDPGAFK--EGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQL 638
Query: 674 FSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT-------- 725
+D LD S Y + +S + + +E ++AN++ ++ R + LP T
Sbjct: 639 TTDWARLDISHY-KRISEEELKEIE-----MLANRIVMEDRKVTWEWLPRTTAEQKYGFR 692
Query: 726 --HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVR 783
V+PG ++ ++ I D + + C GTH+ +TG + ++ + GV
Sbjct: 693 LYQGGVVPGR----EIRVVKIEDWDV----QACGGTHLPSTGLVGPIKILRTERIQDGVE 744
Query: 784 SIKCLTGD 791
I G+
Sbjct: 745 RIIFACGE 752
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 818 IPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876
+P D + V + + F+ V G P + SQ IR D+ G H
Sbjct: 87 LPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDIDNVGITGRHF 142
Query: 877 TFFEMLGNWSFN-----DYYKRDACRMALEFLTK 905
T FEM+ + +FN Y+ + +A EF TK
Sbjct: 143 TIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 176
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 176/843 (20%), Positives = 304/843 (36%), Gaps = 218/843 (25%)
Query: 16 SIRSSFLDYFCNTQ--GHTLVKSSPIVPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRV 72
+R FL +F + H V P++P D + V + + F+ V G P +
Sbjct: 61 EMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 120
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTK 127
SQ +R D+ G H T FEM+ + +FN Y+ + +A EF TK
Sbjct: 121 VISQPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK 176
Query: 128 PPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGP 187
P D + K N W G G
Sbjct: 177 ELXMXPEDITF-------------------------------------KENPWAGG--GN 197
Query: 188 CGYSSEIHYDMKGEPSSAL-------ARVNADRNDLIEIWNIVFISHKRVSADTIVPLSK 240
G + E+ Y +G + L A NA ++ ++ I + +P+
Sbjct: 198 AGPAFEVLY--RGLEVATLVFMQYXXAPENAPQDQVVVI-----------XGEKYIPMET 244
Query: 241 NYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNR------- 293
+DTG G ERLV + Q + YD L ++E + ++G + N
Sbjct: 245 XVVDTGYGLERLVWMSQGTPTAYDAVLGY-VVEPLXXMAGIEKIDEKILMENSRLAGMFD 303
Query: 294 ----------------------TDLDTSYR------MLSDYSRMITVALADNMFPDATAK 325
+L+ + R ++D+++ +T LAD + P +
Sbjct: 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVP-SNVX 362
Query: 326 LRNVVRDALLISEDVFKVKQGKLVKELSYNIA---EILGDVYPEIQDSINKI-QLILGEE 381
+ R LLI + + +++ L LS +A L +PE + + I ++I EE
Sbjct: 363 AGYLAR--LLIRKSIRHLRELGLEVPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEE 420
Query: 382 SRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDM 441
+ LR+ + LV+ + + L K+ I EI +
Sbjct: 421 KXYAETLRRGS-----DLVRRE-----------------IAKLKKK-----GIKEIPVEX 453
Query: 442 AFTLYDTYGLSKNIIQELAAAKKLTL-CHEAFEQKLNELKERSKAKAASNVPDIDLMDLK 500
T Y+++GL+ I+ E+A + + + + F + + ER+K + + D +L LK
Sbjct: 454 LVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFEL--LK 511
Query: 501 HFPVTXXXXXXXXXXXTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSI 560
P T Y P + D +R
Sbjct: 512 DLP------------DTRRLYYEDPFMXE-------------FDAXVLRVIXD------- 539
Query: 561 QLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGK-VEIGELASLEGKIVHFG 619
WV I D T Y GGQ D GV + NG+ V + + + I+H
Sbjct: 540 ------WV--ILDATAFYPEGGGQPYDTGVLIV------NGREVXVTNVQXVGXVIIHXV 585
Query: 620 NVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDEC 678
+F G+ +D R+ MR HT +H+L AL RVL +Q ++ +D
Sbjct: 586 EDPGAF--XEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWA 643
Query: 679 ALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT----------HLT 728
LD S Y ++ E +++AN++ ++ R + LP T
Sbjct: 644 RLDISHY------XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGG 697
Query: 729 VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 788
V+PG ++ ++ I D + + GTH+ +TG + ++ + GV I
Sbjct: 698 VVPGR----EIRVVXIEDWDV----QAXGGTHLPSTGLVGPIXILRTERIQDGVERIIFA 749
Query: 789 TGD 791
G+
Sbjct: 750 CGE 752
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 818 IPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876
+P D + V + + F+ V G P + SQ IR D+ G H
Sbjct: 87 LPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDIDNVGITGRHF 142
Query: 877 TFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLD 913
T FEM+ + +FN Y+ + +A EF TK P D
Sbjct: 143 TIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPED 184
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 570 LIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTP 629
+I +++ Y +GGQ +D+G YL GK E+ ++ +G ++H VV K
Sbjct: 529 VILNRSAFYPESGGQDNDVG--YLIAN---GGKFEVVDVLEADGVVLH---VVKGAKPEV 580
Query: 630 GLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGET 688
G + +D+ +R R H+ +H+L +L++VL +Q R + LD + +
Sbjct: 581 GTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRP 640
Query: 689 LSVDSVAAVEKYINDVIANQ-VQVDRRHMRASELPF---LTHLTVIPGEIYPDDVILIDI 744
+ +++AN+ ++ + +E F L V PG + ++ +
Sbjct: 641 SEEEIKEIEXLANREILANKPIKWEWXDRIEAERKFGFRLYQGGVPPGR----KIRVVQV 696
Query: 745 SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDS 792
D + C GTH +TG I ++ +S GV + G++
Sbjct: 697 GD-----DVQACGGTHCRSTGEIGXLKILKVESIQDGVIRFEFAAGEA 739
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 18 RSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRVANSQ 76
R +L++F +GH ++ P+V I + + F+ V G+ P P + SQ
Sbjct: 66 REYYLNFF-ERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQ 124
Query: 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTK 127
C+R+ +DL GR H T FE + +FN Y+K + E L +
Sbjct: 125 PCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNE 176
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 841 GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN-----DYYKRDA 895
G+ P P + SQ CIR+ +DL GR H T FE + +FN Y+K +
Sbjct: 111 GVAPPPANPLTISQPCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNET 166
Query: 896 CRMALEFLTK 905
E L +
Sbjct: 167 VAYCTELLNE 176
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 560 IQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFG 619
+++ NA ++ D+T Y T GGQ D G NG + EG + H
Sbjct: 23 LEIRDNA---ILLDQTIFYPTGGGQPHDRGTI--------NGVEVLDVYKDEEGNVWHVV 71
Query: 620 NVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL 663
FKV + +++ D R +L MR HT HLL L VL
Sbjct: 72 KEPEKFKVGDEVELKIDWDYRYKL--MRIHTGLHLLEHVLNEVL 113
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 669 KSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVD 712
K VF+D+C L F+ YGE + AA+ Y N NQV+V
Sbjct: 124 KVSMVFTDKCHLTFTHYGEE---SAQAALHTYFNIGDINQVEVQ 164
>pdb|3SKS|A Chain A, Crystal Structure Of A Putative Oligoendopeptidase F From
Bacillus Anthracis Str. Ames
Length = 567
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 201 EPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQN-K 259
E + +N RND + N+ +I H + D +++ F+ ++Q
Sbjct: 38 EQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDAFYKEEQDF------FDEFSPVVQGYG 91
Query: 260 TSTYDTDLFLPLLETIEKVSGAKPYG------RTFTTSNRTDLDTSYRMLSDYSRMITVA 313
T Y+ + P E +E G + + +T++ DL ++ S Y++++ A
Sbjct: 92 TKYYNALIHSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASA 151
Query: 314 LAD 316
D
Sbjct: 152 KID 154
>pdb|2VKY|B Chain B, Headbinding Domain Of Phage P22 Tailspike C-Terminally
Fused To Isoleucine Zipper Piigcn4 (Chimera I)
Length = 154
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 308 RMITVALADNMFPDATAKLRNVVRDALLISEDVFKV---KQGKLVKELSYNIAEILGDVY 364
+++TV DA + + + L D + + K+ KL+K++ I EIL +Y
Sbjct: 80 KIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKLIKQIEDKIEEILSKIY 139
Query: 365 PEIQDSINKIQLILGE 380
I++ I +I+ ++GE
Sbjct: 140 -HIENEIARIKKLIGE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,789,922
Number of Sequences: 62578
Number of extensions: 1182794
Number of successful extensions: 2446
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2399
Number of HSP's gapped (non-prelim): 32
length of query: 925
length of database: 14,973,337
effective HSP length: 108
effective length of query: 817
effective length of database: 8,214,913
effective search space: 6711583921
effective search space used: 6711583921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)