BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6339
(925 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VRJ1|SYAM_DROME Alanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster
GN=Aats-ala-m PE=2 SV=1
Length = 1012
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/817 (37%), Positives = 455/817 (55%), Gaps = 40/817 (4%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L ++ IR +FLD+F GH V+SSP+VP+ D ++AFVN+GM QFK+VFLG AP+ R
Sbjct: 12 LTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKR 71
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
V NSQKCVRVGGKHNDLS G D YHHTFFEMLGNWSF DY+KR+AC MALE L + P +
Sbjct: 72 VVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELL-RGPYN 130
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
+ RLY TYF G G+P D E +IW LG P I G NFWEMG+TGPCG
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSLGFPASRILPFGCADNFWEMGATGPCGPC 190
Query: 192 SEIHYDMKGEPSSALAR---VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLG 248
+EIH D + + S R VNA R+DL E+WN+VFI + R + +I L +++DTG+G
Sbjct: 191 TEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250
Query: 249 FERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTT-SNRTDLDTSYRMLSDYS 307
FERL +LQNK+S YDTDLF P+ + I++ + Y +F N LDTSYR+L+D++
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHA 310
Query: 308 RMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 367
RM+T LAD M PD KLR V+R AL ISE VF KL+ +L + E LG+ YPE+
Sbjct: 311 RMVTACLADGMLPDQNQKLRRVLRKALNISEHVF--AHDKLLTQLVPIVVETLGEAYPEM 368
Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
+ ++ E ++ NLR+++ K + ++ P L+ ++ME PG V + L Q
Sbjct: 369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQ 428
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF--EQKLNELKERSKA 485
+ + T I GD + L DTYGL++ +LA + + E + E L +LK +
Sbjct: 429 RCKFSNNT-IPGDFLYKLTDTYGLTEESFLKLAELENMNCDLERYRAEVSLAKLKAKGNQ 487
Query: 486 KAASNVPDIDL-----------MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGI 534
+ + DL M K TD+ +KY Y +D S Y P L T ++G+
Sbjct: 488 RETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVLGM 547
Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
++ D +R+ S IQ + ++ +N Y +GGQ D G ++
Sbjct: 548 LLNDAEV---------SRTQGS--RIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVS 596
Query: 595 NTTQEN--GKVEIGELASLEGKIVHFGNVVS---SFKVTPGLTSRVEVDARMRLGCMRAH 649
N Q + +++ + L +VH + S +F++ G ++VDA+ R H
Sbjct: 597 NHQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHH 656
Query: 650 TTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
T +HLLNAA+R + TYQ S V SD+C L+ + G+ + V +E IN VI +
Sbjct: 657 TATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSA 716
Query: 709 VQVDRRHMRASELPFLTHLTVIPGEIYPDDVI-LIDISDKE-NVISREPCCGTHVFNTGH 766
V+ + + A+E+ +T++PGE+YP+ + L+++ E + S+E CCGTH NT
Sbjct: 717 APVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSE 776
Query: 767 IESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHL 803
+ ++ K N + + G +++ ++ L
Sbjct: 777 LSCFCIVNLKQTNRARFAFTAVAGQAAENVLKTAALL 813
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++AFVN+GM QFK+VFLG AP+ RV NSQKC+RVGGKHNDLS G D YHHT
Sbjct: 40 VPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQKCVRVGGKHNDLSVVGTDGYHHT 99
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
FFEMLGNWSF DY+KR+AC MALE L + P ++ RLY T+
Sbjct: 100 FFEMLGNWSFGDYFKREACAMALELL-RGPYNIDPGRLYVTY 140
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1
SV=3
Length = 968
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 289/829 (34%), Positives = 423/829 (51%), Gaps = 82/829 (9%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP- 70
L ++ IR F++YF + HT V SS +P D ++ F N+GM QFK +FL +P
Sbjct: 5 LTAREIRERFINYFKRNE-HTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPM 63
Query: 71 ----RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
R AN+QKC+R GGKHNDL G+D YHHTFFEMLG+WSF DY+K AC+MALE LT
Sbjct: 64 AKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ +P++RLY TYFGG + GL D E R IW LG+ I MK NFWEMG TG
Sbjct: 124 QE-FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNLGLDEAKILPGNMKDNFWEMGDTG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G +A VN D +++EIWN+VFI + R S + PL K IDTG
Sbjct: 183 PCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+G ERLV++LQNK S YDTDLF+P E I+K +GA+PY + +D +YR+L+D+
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R ITVALAD PD T + LR ++R A+ S + +G L + + LGD
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRG-FFATLVDVVVQSLGDA 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ + ++ I+ EE F +KT L G +
Sbjct: 361 FPELKKDPDMVKDIINEEEVQF--------------LKT--------------LSRGRRI 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ--KLNELKE 481
L +++ I GD A+ LYDTYG ++ +A K L + + FE+ KL +LK
Sbjct: 393 LDRKIQSLGDCQTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKS 452
Query: 482 RSKAKAASNVPDIDL-----MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVI 536
+ K ++ +D+ + K TDD KY+YH D+ S Y F C V V+
Sbjct: 453 QGKGAGGEDLIMLDIYAIEELRAKGLEATDDSPKYNYHSDS-SGSYVFEC----TVATVL 507
Query: 537 GDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG-VAYLTN 595
A+R R +D + G++ DKT YA GGQI D G + + +
Sbjct: 508 ----------ALR--REKMFVDEVVTGQEC--GVVLDKTCFYAEQGGQIFDEGYLVKVDD 553
Query: 596 TTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
++++ + + G ++H G + + +V G R+ +D R M HT +H+L
Sbjct: 554 SSEDKTEFTVKNAQVRGGYVLHIGTIYGNLRV--GDQVRLFIDEPRRRPVMSNHTATHIL 611
Query: 656 NAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715
N ALR VL QK V D DF+ G +S + + E+ +N +I V
Sbjct: 612 NFALRSVLGDADQKGSLVAPDRLRFDFTAKG-AMSTEQIKKTEEIVNGMIEAAKPVYTLD 670
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHVFN 763
+ + L + E YPD V ++ I ++ S E C GTH+ N
Sbjct: 671 CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRN 730
Query: 764 TGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQI 812
+ H + ++ ++ G+R I +TG ++ A+ + L + S ++
Sbjct: 731 SSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAMEV 779
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP-----RVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FL +P R AN+QKCIR GGKHNDL G+D
Sbjct: 32 IPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLG+WSF DY+K AC+MALE LT+ +P++RLY T+
Sbjct: 92 VYHHTFFEMLGSWSFGDYFKELACKMALELLTQ-EFGIPVERLYVTY 137
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-ala PE=2 SV=1
Length = 966
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 282/817 (34%), Positives = 421/817 (51%), Gaps = 85/817 (10%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP----- 66
L +K +R+++LD+F Q H V SS +P D ++ F N+GM QFK +FLG
Sbjct: 4 LTAKEVRNAYLDFF-KEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62
Query: 67 APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
+ + RVAN+QKC+R GGKHNDL G+D YHHTFFEMLGNWSF DY+K++ C A EFLT
Sbjct: 63 SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ ++LP DRLY TYFGG GL D E + +WL+LG+ +HI MK NFWEMG TG
Sbjct: 123 QR-LALPKDRLYVTYFGGDAASGLEPDLECKQMWLDLGLKPEHILPGSMKDNFWEMGETG 181
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SE+H+D G S VN D D++EIWN+VFI + R S ++ L K +ID G
Sbjct: 182 PCGPCSELHFDRIG-GRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+GFERLV+++QNK S YDTDLF+PL + I+ +GA PY + +D +YR+L+D+
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADH 300
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R IT+ALAD PD T + LR ++R A+ + + K G L + ++LGD
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPG-FFATLVNTVVDLLGDA 359
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ I I+ EE F +KT L G
Sbjct: 360 FPEVKKDPQHIIDIINEEELQF--------------LKT--------------LTRGRNL 391
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERS 483
L + + + + T I GD+A+ LYDTYG ++ Q +A K L + + +E + S
Sbjct: 392 LNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLTQLMAEEKSLKIDMDGYEAAKHNSYVLS 451
Query: 484 KAKAASNVPDIDL-------MDLKHFPVTDD--KYKYDYHYDTNSKRYTFPCLDTNLVGI 534
+ K AS + +I+L + + P T+D KYKY+ D Y + ++ +V +
Sbjct: 452 QGKGASKIEEINLDVHAISQLQEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVAL 511
Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
+Q + SG G++ DKTN YA +GGQI D G L
Sbjct: 512 RFENQF-------VNEITSGQK-----------AGIVLDKTNFYAESGGQIYDQGA--LV 551
Query: 595 NTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHL 654
E + + + + G I+H G V + KV L + +D R M+ H+ +H
Sbjct: 552 KVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDEL--ELHIDVERRWLTMKNHSATHA 609
Query: 655 LNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDR 713
LN L +VL T QK V ++ DF+ ++++ V+ E+ +++ V +
Sbjct: 610 LNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKA-AMTIEQVSKTEQLTKEMVYKNVPIYA 668
Query: 714 RHMRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHV 761
+ + + + L + E+YPD V +I S+ S E C GTH+
Sbjct: 669 KESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAGEQTSVEFCGGTHL 728
Query: 762 FNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVE 798
+GHI + ++ G+R I LTG + A++
Sbjct: 729 RRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALK 765
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 76/107 (71%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FLG + + RVAN+QKCIR GGKHNDL G+D
Sbjct: 31 IPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKD 90
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLGNWSF DY+K++ C A EFLT+ ++LP DRLY T+
Sbjct: 91 VYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQ-RLALPKDRLYVTY 136
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars
PE=2 SV=1
Length = 968
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 283/828 (34%), Positives = 421/828 (50%), Gaps = 82/828 (9%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP- 70
L ++ IR F+++F + HT V SS +P D ++ F N+GM QFK +FL +P
Sbjct: 5 LTAREIRERFINFFRRNE-HTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPL 63
Query: 71 ----RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
R AN+QKC+R GGKHNDL G+D YHHTFFEMLG+WSF DY+K AC+MALE LT
Sbjct: 64 AKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ ++P++RLY TYFGG + GL D E + IW LG+ I MK NFWEMG TG
Sbjct: 124 QE-FAIPVERLYVTYFGGDEAAGLEPDLECKQIWQNLGLDDAKILPGNMKDNFWEMGDTG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G +A VN D +++EIWN+VFI + R + + PL K IDTG
Sbjct: 183 PCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+G ERLV++LQNK S YDTDLF+P E I+K +GA+PY + +D +YR+L+D+
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R ITVALAD PD T + LR ++R A+ S + +G L + + LGD
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRG-FFATLVDVVVQSLGDA 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ + ++ I+ EE F +KT L G +
Sbjct: 361 FPELKKDPDMVKDIINEEEVQF--------------LKT--------------LSRGRRI 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ--KLNELKE 481
L +++ I GD A+ LYDTYG ++ +A K L + + FE+ KL +LK
Sbjct: 393 LDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKS 452
Query: 482 RSKAKAASNVPDIDL-----MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVI 536
+ K ++ +D+ + K TDD KY+YH D+ S Y F C ++ +
Sbjct: 453 QGKGAGGEDLIMLDIYAIEELRAKGLEATDDSPKYNYHSDS-SGAYVFECTVATVLALR- 510
Query: 537 GDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG-VAYLTN 595
+K + +G G++ DKT YA GGQI D G + + +
Sbjct: 511 ------REKMFVEEVVTGQE-----------CGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Query: 596 TTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
++++ + + G ++H G + + KV G R+ +D R M HT +H+L
Sbjct: 554 SSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKV--GDQVRLFIDEPRRRPVMSNHTATHIL 611
Query: 656 NAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715
N ALR VL QK V D DF+ G +S + E+ +N +I V +
Sbjct: 612 NFALRSVLGEADQKGSLVAPDRLRFDFTAKG-AMSTQQIKEAEEIVNAMIEAAKPVYTQD 670
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHVFN 763
+ + L + E YPD V ++ I ++ S E C GTH+ N
Sbjct: 671 CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQN 730
Query: 764 TGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQ 811
+ H + ++ ++ G+R I +TG ++ A+ + L + S +
Sbjct: 731 SSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLRRSLSIME 778
Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP-----RVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FL +P R AN+QKCIR GGKHNDL G+D
Sbjct: 32 IPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAKLSRAANTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLG+WSF DY+K AC+MALE LT+ ++P++RLY T+
Sbjct: 92 VYHHTFFEMLGSWSFGDYFKELACKMALELLTQ-EFAIPVERLYVTY 137
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1
Length = 968
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 287/826 (34%), Positives = 419/826 (50%), Gaps = 84/826 (10%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP- 70
L ++ IR F+++F + HT V SS +P D ++ F N+GM QFK +FL +P
Sbjct: 5 LTAREIRERFINFFRRNE-HTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPM 63
Query: 71 ----RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
R AN+QKC+R GGKHNDL G+D YHHTFFEMLG+WSF DY+K AC+MALE LT
Sbjct: 64 AKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ +P++RLY TYFGG + GL D E R IW LG+ I MK NFWEMG TG
Sbjct: 124 QE-FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNLGLDEARILPGNMKDNFWEMGDTG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G +A VN D +++EIWN+VFI + R S + PL K IDTG
Sbjct: 183 PCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+G ERLV++LQNK S YDTDLF+P E I+K +GA+PY + +D +YR+L+D+
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R ITVALAD PD T + LR ++R A+ S + +G L + + LGD
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRG-FFATLVDVVVQSLGDA 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ ++ I+ EE F +KT L G +
Sbjct: 361 FPELKKDPEMVKDIINEEEVQF--------------LKT--------------LSRGRRI 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERS 483
L +++ I GD A+ LYDTYG ++ +A K L + FE++ + +S
Sbjct: 393 LDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMNGFEEERRLAQLKS 452
Query: 484 KAKAASNVPDIDLMDL--------KHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIV 535
+ K A + D+ ++D+ K TDD KY+Y D+ S Y F C V V
Sbjct: 453 QGKGAGD-EDLIMLDIYAIEELRAKGLEATDDSPKYNYQSDS-SGSYVFEC----TVATV 506
Query: 536 IGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG-VAYLT 594
+ A+R R +D + G++ DKT YA GGQI D G + +
Sbjct: 507 L----------ALR--REKMFVDEVVTGQEC--GVVLDKTCFYAEQGGQIYDEGYLVKVD 552
Query: 595 NTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHL 654
+++++ + + G ++H G + + KV G R+ +D R M HT +H+
Sbjct: 553 DSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKV--GDQVRLFIDEPRRRPVMSNHTATHI 610
Query: 655 LNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRR 714
LN ALR VL QK V D DF+ G +S + E+ +N +I V +
Sbjct: 611 LNFALRSVLGEADQKGSLVAPDRLRFDFTAKG-AMSTQQIKKAEEIVNGMIEAAKPVYTQ 669
Query: 715 HMRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHVF 762
+ + L + E YPD V ++ I ++ S E C GTH+
Sbjct: 670 DCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLR 729
Query: 763 NTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAAS 808
N+ H + ++ ++ G+R I +TG ++ A+ + L + S
Sbjct: 730 NSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLS 775
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP-----RVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FL +P R AN+QKCIR GGKHNDL G+D
Sbjct: 32 IPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLG+WSF DY+K AC+MALE LT+ +P++RLY T+
Sbjct: 92 VYHHTFFEMLGSWSFGDYFKELACKMALELLTQ-EFGIPVERLYVTY 137
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2
Length = 968
Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust.
Identities = 284/825 (34%), Positives = 416/825 (50%), Gaps = 82/825 (9%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP- 70
L + IR F+D+F + HT V SS +P D ++ F N+GM QFK +FL +P
Sbjct: 5 LTASEIRQRFIDFFKRNE-HTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPM 63
Query: 71 ----RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
R AN+QKC+R GGKHNDL G+D YHHTFFEMLG+WSF DY+K AC+MALE LT
Sbjct: 64 AKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ +P++RLY TYFGG + GL D E + IW LG+ I MK NFWEMG TG
Sbjct: 124 QE-FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G +A VN D +++EIWN+VFI + R + + PL K IDTG
Sbjct: 183 PCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+G ERLV++LQNK S YDTDLF+P E I+K +GA+PY + +D +YR+L+D+
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R ITVALAD PD T + LR ++R A+ + + +G L + + LGD
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRG-FFATLVDVVVQSLGDA 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ + ++ I+ EE F +KT L G +
Sbjct: 361 FPELKKDPDMVKDIINEEEVQF--------------LKT--------------LSRGRRI 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ--KLNELKE 481
L +++ I GD A+ LYDTYG ++ +A K L + + FE+ KL +LK
Sbjct: 393 LDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKS 452
Query: 482 RSKAKAASNVPDIDL-----MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVI 536
+ K ++ +D+ + + VTDD KY+YH D+ S Y F N V V+
Sbjct: 453 QGKGAGGEDLIMLDIYAIEELRARGLEVTDDSPKYNYHLDS-SGSYVF----ENTVATVM 507
Query: 537 GDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG-VAYLTN 595
+K + +G G++ DKT YA GGQI D G + + +
Sbjct: 508 ---ALRREKMFVEEVSTGQE-----------CGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Query: 596 TTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
++++ + + G ++H G + KV G + +D R M HT +H+L
Sbjct: 554 SSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKV--GDQVWLFIDEPRRRPIMSNHTATHIL 611
Query: 656 NAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715
N ALR VL QK V D DF+ G +S + E+ N++I V +
Sbjct: 612 NFALRSVLGEADQKGSLVAPDRLRFDFTAKG-AMSTQQIKKAEEIANEMIEAAKAVYTQD 670
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHVFN 763
+ + L + E YPD V ++ I ++ S E C GTH+ N
Sbjct: 671 CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRN 730
Query: 764 TGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAAS 808
+ H + ++ ++ G+R I +TG ++ A+ + L S
Sbjct: 731 SSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLS 775
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP-----RVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FL +P R AN+QKCIR GGKHNDL G+D
Sbjct: 32 IPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLG+WSF DY+K AC+MALE LT+ +P++RLY T+
Sbjct: 92 VYHHTFFEMLGSWSFGDYFKELACKMALELLTQ-EFGIPIERLYVTY 137
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=aars-2 PE=2 SV=1
Length = 968
Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust.
Identities = 281/825 (34%), Positives = 415/825 (50%), Gaps = 86/825 (10%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP----- 66
L + +RS+F+++F + HT V SS ++P+ D ++ F N+GM QFK +FLG+
Sbjct: 4 LTASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDL 63
Query: 67 APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
A R N+QKC+R GGKHNDL G+D YHHT+FEMLGNWSF DY+K++ A E LT
Sbjct: 64 AKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+P +RLY + FGG + G+P D E RDIW +GVP + I GMK NFWEMG G
Sbjct: 124 -TVYGIPAERLYVSVFGGDEANGVPADSEARDIWRSVGVPDERILNFGMKDNFWEMGDVG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G A VNAD ++EIWN+VFI R + PL +ID G
Sbjct: 183 PCGPCSEIHYDRIGN-RDASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
LG ERL+ ++Q+KTS YDTD+F P+ E I K SG + Y ++ +D +YR+++D+
Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
R +T+AL+D PD + + LR ++R + + + + G L + ILG+
Sbjct: 302 VRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPG-FFASLVPVVISILGET 360
Query: 364 YPEI-QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVK 422
+PE+ +D + + +I EE + L + V ++ V++ PE M P
Sbjct: 361 FPELSRDPVTVMDIINDEEKQFLKTLSRGRVL-FQRAVQSLPE----GTMTFP------- 408
Query: 423 YLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKER 482
GD+++ LYDTYG ++ Q +A K L++ + AFE+ + E
Sbjct: 409 ----------------GDVSWRLYDTYGFPADLTQLMAEEKGLSVDNTAFEEARRKAIET 452
Query: 483 SKAKAASNVPDIDL-------MDLKHFPVTDD--KYKYDYHYDTNSKRYTF-PCLDTNLV 532
S A +DL + K P TDD KY Y + + + Y F PC V
Sbjct: 453 SSAGTGKFRDTLDLDVHALAELQQKGVPTTDDSPKYAYTFTGEGSDAVYKFEPC-----V 507
Query: 533 GIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAY 592
G ++ AIR R G +D QL ++ D+TN YA GGQI D+GV
Sbjct: 508 GKIL----------AIR--RDGKFVD--QLAAGEEGAILLDRTNFYAEQGGQIYDVGV-- 551
Query: 593 LTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTS 652
LT E+ + + G IV G+ SF V + R + D + + M+ HT +
Sbjct: 552 LTKVNDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDQVNERFDEDRKQLI--MKNHTGT 609
Query: 653 HLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVD 712
H+LN ALR+VL + QK V D DF+ ++V V E+Y +I + QV
Sbjct: 610 HVLNYALRKVLADSDQKGSLVAPDRMRFDFTNKA-GMTVQQVKKAEEYAQQLIDTKGQVY 668
Query: 713 RRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP------------CCGTH 760
++ E + L + E YPD V ++ + + + P C GTH
Sbjct: 669 AKNSPLGEAKKVKGLRAMFDETYPDPVRVVAVGTPVEQLLQNPDAEEGQNTTVEFCGGTH 728
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLST 805
+ N HI + ++ G+R I LTG ++ A+ L+
Sbjct: 729 LQNVSHIGRIVIASEEAIAKGIRRIVALTGPEAERAIARADRLTA 773
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 69/106 (65%), Gaps = 6/106 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
IP+ D ++ F N+GM QFK +FLG+ A R N+QKCIR GGKHNDL G+D
Sbjct: 32 IPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAKLKRAVNTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
YHHT+FEMLGNWSF DY+K++ A E LT +P +RLY +
Sbjct: 92 VYHHTYFEMLGNWSFGDYFKKEIITWAWELLT-TVYGIPAERLYVS 136
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1
Length = 968
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 287/832 (34%), Positives = 418/832 (50%), Gaps = 88/832 (10%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP- 70
L + IR F+D+F + HT + SS +P D ++ F N+GM QFK +FL +P
Sbjct: 5 LTASKIRQRFIDFFKRNE-HTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPM 63
Query: 71 ----RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
R AN+QKC+R GGKHNDL G+D YHHTFFEMLG+WSF DY+K AC+MALE LT
Sbjct: 64 AKPSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
+ +P++RLY TYFGG + GL D E + IW LG+ I MK NFWEMG TG
Sbjct: 124 QE-FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SEIHYD G +A VN D +++EIWN+VFI + R + + PL K IDTG
Sbjct: 183 PCGPCSEIHYDRIGGRDAA-HLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
+G ERLV++LQNK S YDTDLF+P E I+K +GA+PY + +D +YR+L+D+
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R ITVALAD PD T + LR ++R A+ + + +G L + + LGD
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRG-FFATLVDVVVQSLGDA 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ + ++ I+ EE F +KT L G +
Sbjct: 361 FPELKKDPDMVKDIINEEEVQF--------------LKT--------------LSRGRRI 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ--KLNELKE 481
L +++ I GD A+ LYDTYG ++ +A K L + + FE+ KL +LK
Sbjct: 393 LDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKS 452
Query: 482 RSKAKAASNVPDIDL-----MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVI 536
+ K ++ +D+ + + VTDD KY+YH D+ S Y F N V V+
Sbjct: 453 QGKGAGGEDLIMLDIYAIEELRARDLEVTDDSPKYNYHLDS-SGSYVF----ENTVATVM 507
Query: 537 GDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG-VAYLTN 595
+K + +G G++ DKT YA GGQI D G + + +
Sbjct: 508 ---ALRREKMFVEEVSTGQE-----------CGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Query: 596 TTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
++++ + + G ++H G + KV G + +D R M HT +H+L
Sbjct: 554 SSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKV--GDQVWLFIDEPRRRPIMSNHTATHIL 611
Query: 656 NAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715
N ALR VL QK V D DF+ G +S + E+ N++I V +
Sbjct: 612 NFALRSVLGEADQKGSLVAPDRLRFDFTAKG-AMSTQQIKKAEEIANEMIEAAKPVYTQD 670
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISREPCCGTHVFN 763
+ + L + E YPD V ++ I ++ S E C GTH+ N
Sbjct: 671 CSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRN 730
Query: 764 TGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNV 815
+ H + ++ ++ G+R I +TG E K L A S + L+V
Sbjct: 731 SSHAGAFVIVTEEAIAKGIRRIVAVTG------AEAQKALRKAGSLKKPLSV 776
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 812 ILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP-----RVANSQKCIRVGGKHNDL 866
I + IP D ++ F N+GM QFK +FL +P R AN+QKCIR GGKHNDL
Sbjct: 26 IHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKPSRAANTQKCIRAGGKHNDL 85
Query: 867 SFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
G+D YHHTFFEMLG+WSF DY+K AC+MALE LT+ +P++RLY T+
Sbjct: 86 DDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQ-EFGIPIERLYVTY 137
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1
Length = 967
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 279/816 (34%), Positives = 411/816 (50%), Gaps = 85/816 (10%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG-LTP---- 66
+ IR +F+D+F +GH V SS +P D ++ F N+GM QFK +FLG + P
Sbjct: 5 MTGNEIRKTFIDFFIK-KGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDM 63
Query: 67 APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT 126
A Y RV N+QKC+R GGKHNDL G+D YHHTFFEM+GNWSF DY+K++ C A E LT
Sbjct: 64 AQYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLT 123
Query: 127 KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTG 186
L +RLY TYF G GL D E R+IWL LGVP HI MK NFWEMG TG
Sbjct: 124 DV-FKLSRERLYVTYFEGDPSSGLEPDLECRNIWLNLGVPEAHILPGSMKDNFWEMGETG 182
Query: 187 PCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTG 246
PCG SE+HYD G+ +A VN D D++EIWN+VFI R + ++ L +ID G
Sbjct: 183 PCGPCSELHYDRIGDREAA-HLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPTKHIDCG 241
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDY 306
LG ERLV+++QNK + YDTD F+P+ + IE +G +PY + +D +YR+L+D+
Sbjct: 242 LGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADH 301
Query: 307 SRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+R +T+AL+D PD T + LR ++R A+ + + K G L Y + E+LGDV
Sbjct: 302 ARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPG-FFGSLVYTVVELLGDV 360
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PEI+ + I ++ EE F +KT L+ G
Sbjct: 361 FPEIKKDPDSIVHVINEEEVQF--------------LKT--------------LLRGRNL 392
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ--KLNELKE 481
L + + + + + GD+A+ LYDTYG ++ Q + K L + E +E+ K ++L
Sbjct: 393 LYRTIEKLNNSKTLPGDVAWRLYDTYGFPIDLTQLMCEEKGLNVDMEGYEKSRKESQLVS 452
Query: 482 RSKAKAASNVPDIDLMDLKHF-----PVTDDKYKYDYHYDTNSKR--YTFPCLDTNLVGI 534
+ KA ++ +D+ + H P TDD KY+Y + K YTF +V
Sbjct: 453 QGKAAGQEDLIALDVHAISHLQDTGIPATDDSPKYNYLPSSTDKDALYTFAPCTAKIV-- 510
Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
A+R + S ++ G+I D+T+ YA GGQI D G Y+
Sbjct: 511 ------------ALRKNKEFVS----EISSGQECGVILDRTSFYAEQGGQIFDEG--YMV 552
Query: 595 NTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHL 654
E + + + G ++H G V KV G T + +D R M HT +H+
Sbjct: 553 KIDDETVEFTVKNVQVKGGYVLHAGKVEGILKV--GDTLSLHIDTERRRLVMNNHTGTHV 610
Query: 655 LNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDR 713
LN LR+VL + Q+ V D DF+ G +++ + E I ++IA V
Sbjct: 611 LNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKG-PMTIKQIKDTENEIKEIIAKNKTVYA 669
Query: 714 RHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP------------CCGTHV 761
+ SE + L + E YPD V ++ + + + P C G+H+
Sbjct: 670 NYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVEDLIKNPDAPTGFETSVEFCGGSHL 729
Query: 762 FNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
T HI ++ + G+R I +TG + A+
Sbjct: 730 HRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAI 765
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLG-LTP----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
IP D ++ F N+GM QFK +FLG + P A Y RV N+QKCIR GGKHNDL G+D
Sbjct: 32 IPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYIRVVNTQKCIRAGGKHNDLDDVGKD 91
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEM+GNWSF DY+K++ C A E LT L +RLY T+
Sbjct: 92 VYHHTFFEMMGNWSFGDYFKKEICAWAWELLTD-VFKLSRERLYVTY 137
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ALA1 PE=1 SV=1
Length = 969
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 290/851 (34%), Positives = 427/851 (50%), Gaps = 106/851 (12%)
Query: 4 PNISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG 63
PN S++ + +RS+FLDYF Q HT V SS +VP+ D ++ F N+GM Q+K +FLG
Sbjct: 18 PNGSNH--WTASKVRSTFLDYFKKQQ-HTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLG 74
Query: 64 LTP-----APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDAC 118
A R ANSQKC+R GGKHNDL GRDSYHHTFFEMLGNWSF DY+K++A
Sbjct: 75 TVDPASDFASLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAI 134
Query: 119 RMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCN 178
+ E LTK L DRLY TYFGG ++ GL D E ++ WL++GVP DHI ++ N
Sbjct: 135 DYSWELLTKV-YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKVGVPEDHILPGSVEDN 193
Query: 179 FWEMGSTGPCGYSSEIHYD-MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP 237
FWEMG GPCG SEIHYD + G +SAL VN D +++E+WN+VFI + R + +
Sbjct: 194 FWEMGDQGPCGPCSEIHYDRIGGRNASAL--VNMDDPNVLEVWNVVFIQYNREADGNLRT 251
Query: 238 LSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLD 297
L +IDTG+GFERLV+ILQNK S YDTD+FLP+ + I +++G +PY F ++ +D
Sbjct: 252 LPNKHIDTGMGFERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGID 311
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSY 354
T+YR+++D+ R +T A+ D P+ + LR ++R G ++L
Sbjct: 312 TAYRVIADHVRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVD 371
Query: 355 NIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEE 414
+ E +++PEI ++ IL EE F K L + + EQ+ I+
Sbjct: 372 VVIEQNKEIFPEISSGAQDLKEILNEEELSFA----------KTLDRGEKLFEQYAII-- 419
Query: 415 PGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ 474
++ P T +SG + LYDTYG ++ + +A L + E FE+
Sbjct: 420 -------------ASKTPEQT-LSGKDVWRLYDTYGFPVDLTRLMAEEAGLKIDEEGFER 465
Query: 475 KLNELKERSKA---KAASNVPDIDLMDLKHF------PVTDDKYKYDYHYDTNSKRYTFP 525
E +E SK K + +D+ L P T+D++K Y
Sbjct: 466 AKEESREASKGSGTKDGKTLVKLDVHALSELDQNDAIPKTNDEFK-----------YGLE 514
Query: 526 CLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQI 585
+ +VGI G + +DSI+ + + G++ DKT YA GGQ
Sbjct: 515 NVKAKVVGIYDGSKF----------------VDSIE-DPSIQYGILLDKTPFYAEQGGQE 557
Query: 586 DDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGC 645
D G + ++ N + + G ++H GN+V K+ G D R
Sbjct: 558 YDTGKLVIDGKSEFN----VANVQVYAGYVLHTGNIVDG-KLNVGDEIIATYDELRRWPI 612
Query: 646 MRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 704
HT +H+LN ALR VL QK V ++ DFS + + ++ + +E N
Sbjct: 613 RNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFS-HKQAVTAKELEKIEAISNKY 671
Query: 705 IANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVIS 752
I N +V + + ++ + L + GE YPD V ++ I + K + IS
Sbjct: 672 IKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTNTKWHEIS 731
Query: 753 REPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAAS-FSQ 811
E C GTHV TG I+ +I G+R I +TG + H+ A+ F Q
Sbjct: 732 IEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTG-------HDAHHVQKVANEFEQ 784
Query: 812 -ILNVGNIPYG 821
I N ++P+G
Sbjct: 785 EIDNASSLPFG 795
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
+P+ D ++ F N+GM Q+K +FLG A R ANSQKCIR GGKHNDL GRD
Sbjct: 51 VPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLKRAANSQKCIRAGGKHNDLEDVGRD 110
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
SYHHTFFEMLGNWSF DY+K++A + E LTK L DRLY T+
Sbjct: 111 SYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTK-VYGLQEDRLYVTY 156
>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2
SV=1
Length = 980
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 275/816 (33%), Positives = 415/816 (50%), Gaps = 86/816 (10%)
Query: 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYP 70
++R +FL +F + GH LV S+ + P GD S+ FVN+GM QFK +FLG A +
Sbjct: 36 AVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFR 95
Query: 71 RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSF-NDYYKRDACRMALEFLTKPP 129
RV NSQKCVR GG+HNDL GRD HHTFFEMLGNW+F +Y+K +AC MA E LT+
Sbjct: 96 RVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ-V 154
Query: 130 VSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCG 189
+P DRL+ +YF G Q GL D ETRDIWL LGVP + G + NFWEMG TGPCG
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCG 214
Query: 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249
+EIHYD+ G S L+E+WN+VF+ H R + ++ L + ++DTG+G
Sbjct: 215 PCTEIHYDLAGGVGSP---------QLVELWNLVFMQHYREADGSLQLLPQRHVDTGMGL 265
Query: 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
ERLV +LQ K STYDTDLF PLL+ I + GA PY ++ +DT+YR+++D+ R
Sbjct: 266 ERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIRT 325
Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 366
++V +AD + P + LR ++R A+ S +V + G + L + E LG YPE
Sbjct: 326 LSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPG-FLGSLVPVVVETLGSAYPE 384
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLV-KTQPELEQFNIMEEPGLVLGVKYLT 425
++ + KI ++ E+ F A+++ + ++ +T L ++ P V L+
Sbjct: 385 LEKNSVKIASLVSEDEAAF----LASLQRGRRIIDRTVKRLGPSDLF--PAEVAWSLSLS 438
Query: 426 KQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKA 485
L + E+ + DT GL + L + + + + + +
Sbjct: 439 GNLGIPLDLVELMLEEKGVKLDTAGLEQ-------------LAQKEAQHRAQQAEADQED 485
Query: 486 KAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDK 545
+ +V ++ + + P TDD KY+Y N Y F + ++ +
Sbjct: 486 RLCLDVHALEELHRQGIPTTDDSPKYNYTLHPNGD-YEFGLCEARVLQL----------- 533
Query: 546 HAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEI 605
++ +G ++ S+ GL+ D+TN YA GGQ D G YL T Q++ +
Sbjct: 534 ----YSETGTAVASVGAGQR--CGLLLDRTNFYAEQGGQASDRG--YLVRTGQQDMLFPV 585
Query: 606 GELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTC 665
G I+H +V G ++ VD R+GCM HT +HLL+ ALR+ L
Sbjct: 586 AGAQLCGGFILHEAMAPERLQV--GDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGP 643
Query: 666 TYQKSCRVFSDECALDFSVYGET-LSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFL 724
T ++ + E L F V +T L+ + + VE Y+ +V+ + + E+P L
Sbjct: 644 TTEQRGSHLNPE-RLRFDVATQTLLTTEQLRTVESYVQEVVGQD-----KPVFMEEVP-L 696
Query: 725 THLTVIPG-----EIYPDDV-----------ILIDISDKENVISREPCCGTHVFNTGHIE 768
H IPG E+YPD V L S S E CCGTH+ +TG +
Sbjct: 697 AHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVG 756
Query: 769 SCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLS 804
+IG + G+ + +TG+ ++ A E G+ LS
Sbjct: 757 DLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLS 792
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 7/107 (6%)
Query: 819 PYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRDS 873
P GD S+ FVN+GM QFK +FLG A + RV NSQKC+R GG+HNDL GRD
Sbjct: 61 PRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVVNSQKCVRAGGRHNDLEDVGRDL 120
Query: 874 YHHTFFEMLGNWSF-NDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
HHTFFEMLGNW+F +Y+K +AC MA E LT+ +P DRL+ ++
Sbjct: 121 SHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ-VYGIPEDRLWVSY 166
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3
Length = 1003
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 273/812 (33%), Positives = 417/812 (51%), Gaps = 98/812 (12%)
Query: 8 SYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP- 66
S + +K +R +++D+F +GH SSP+VP+ D ++ F N+GM Q+K +FLG
Sbjct: 55 SETQWPAKRVRDTYVDFF-RGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADP 113
Query: 67 ----APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMAL 122
+ R N+QKC+R GGKHNDL G+D+YHHTFFEMLGNWSF DY+K++A A
Sbjct: 114 NTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAW 173
Query: 123 EFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEM 182
E LTK LP DR+Y TYFGG ++ GL D E RDIWL++ +P + G K NFWEM
Sbjct: 174 ELLTKV-YGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKV-LPSGRVLPFGCKDNFWEM 231
Query: 183 GSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242
G TGPCG +EIHYD G +A + VN D +EIWN+VFI R S ++ PL +
Sbjct: 232 GDTGPCGPCTEIHYDRIGNRDAA-SLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKH 290
Query: 243 IDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRM 302
+DTG+GFERL ++LQNK S YDTD+F+P+ + I+K +GA+PY + +D +YR+
Sbjct: 291 VDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRV 350
Query: 303 LSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEI 359
++D+ R ++ A+AD P + LR ++R A+ +++ K ++G L ++ +
Sbjct: 351 VADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEG-FFNGLVSSVIRV 409
Query: 360 LGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVL 419
+GDV+ E+++ KI I+ EE F K L K +E+F
Sbjct: 410 MGDVFTELKEHEKKITDIIKEEEASF----------CKTLAKG---IEKF---------- 446
Query: 420 GVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479
++ + +SGD AF L+DTYG ++ Q +A + L + + F + + E
Sbjct: 447 ------RKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEA 500
Query: 480 KERS-----KAKAASNVPDIDLMDLKH---FPVTDDKYKYDYHYDTNSKRYTFPCLDTNL 531
+ERS K + V D D H TDD +KY + D S+ L
Sbjct: 501 RERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESE----------L 550
Query: 532 VGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVA 591
I G S A+ D+ VGL+ T+ YA GGQI D G+
Sbjct: 551 KAIYTGSTFL----------ESSAASDN--------VGLVLGSTSFYAEQGGQIFDTGLI 592
Query: 592 YLTNTTQENGKVEIGELASLEGKIVHFGNVV-SSFKVTPGLTSRVEVDARMRLGCMRAHT 650
+ T V+I G ++H G + + +V+ G +VD R HT
Sbjct: 593 EGSFGTFNVCNVQI-----FGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPNHT 647
Query: 651 TSHLLNAALRRVLTCTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQV 709
+H+LN AL+ VL QK V ++ DFS +G+ + + + +E +N I +++
Sbjct: 648 CTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFS-HGKPVDPEDLRRIESIVNKQIKDEL 706
Query: 710 QVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDI--------SDKEN----VISREPCC 757
V + SE + L + GE+YPD V ++ I +D EN ++S E C
Sbjct: 707 DVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFCG 766
Query: 758 GTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT 789
GTH+ NT ++ ++ + G+R + +T
Sbjct: 767 GTHITNTREAKAFALLSEEGIAKGIRRVTAVT 798
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
+P+ D ++ F N+GM Q+K +FLG + R N+QKCIR GGKHNDL G+D
Sbjct: 86 VPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKD 145
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
+YHHTFFEMLGNWSF DY+K++A A E LTK LP DR+Y T+
Sbjct: 146 TYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTK-VYGLPTDRIYATY 191
>sp|Q5AQL1|SYA_EMENI Alanine--tRNA ligase OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ala1 PE=3 SV=2
Length = 961
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 275/819 (33%), Positives = 415/819 (50%), Gaps = 92/819 (11%)
Query: 5 NISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG- 63
N+ S + SK +R +FL YF +GHT V SSP+ P D ++ F N+GM QFK++FLG
Sbjct: 4 NLQSQPKWTSKLVRDTFLQYF-QGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGT 62
Query: 64 LTP----APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACR 119
+ P A NSQKC+R GGKHNDL G+DSYHHTFFEMLGNWSF DY+K++A +
Sbjct: 63 VNPNSDFAQLKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQ 122
Query: 120 MALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNF 179
+ E LT+ L RLY TYF G+ + GL D E + +W +GVP DHI MK NF
Sbjct: 123 YSWELLTQV-YGLDPGRLYVTYFEGNKEGGLQPDLEAKALWKAVGVPEDHILPGNMKDNF 181
Query: 180 WEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLS 239
WEMG GPCG SEIHYD G ++A + VN D +++EIWN VFI + R + ++ L
Sbjct: 182 WEMGDQGPCGPCSEIHYDRIGGRNAA-SLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLP 240
Query: 240 KNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTS 299
++DTG+GFERLV++LQ+K+S YDTD+F P+ +TI+ ++GA+ Y F T + +DT+
Sbjct: 241 NKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTA 300
Query: 300 YRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNI 356
YR+++D+ R + A++D + P+ + +R V+R + F V+ G ++ +
Sbjct: 301 YRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTV 360
Query: 357 AEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPG 416
E LGD++PE++ + IL EE F K L + + + EQ+
Sbjct: 361 VEQLGDMFPELKQKQQDVIEILNEEEISFA----------KTLDRGERQFEQY------- 403
Query: 417 LVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKL 476
Q A+ ++ G + LYDT+G ++ + +A + L + FE+
Sbjct: 404 ---------AQQAKTAGDHKLHGADVWRLYDTFGFPVDLTRIMAEERGLEIDDRQFEEAR 454
Query: 477 NELKERSKA--KAASNVPDIDLMDLKHF------PVTDDKYKYDYHYDTNSKRYTFPCLD 528
++ KE SK K + +D+ DL P TDD K++
Sbjct: 455 HKAKEASKGQKKTTTGSVKLDVHDLGKLEKMNGVPKTDDSAKFE---------------- 498
Query: 529 TNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDI 588
IG+ I AI H ++ S + L+ + +G+I D+TN YA GGQ +D
Sbjct: 499 -------IGNVTAQI--KAIYHGKTFHS-STQNLDDSEQIGIILDRTNFYAEQGGQENDT 548
Query: 589 GVAYLTNTTQENGKVEIGELASLEGKIVHFGNV-VSSFKVTPGLTSRVEVDARMRLGCMR 647
G + + +E+ ++ G ++H G + SFKV T E D R
Sbjct: 549 GRIVIDGQAE----LEVVDVQQYAGYVLHTGYMKYGSFKVDD--TVICEYDELRRWPIRN 602
Query: 648 AHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIA 706
HT +H+LN ALR VL QK V +++ DFS V+ V +E I
Sbjct: 603 NHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVELV-KIEDLSTQYIR 661
Query: 707 NQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVI------------SRE 754
V + + S + + + GE YPD V ++ + + + I S E
Sbjct: 662 RNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKNVEDPRWADFSIE 721
Query: 755 PCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSS 793
C GTHV TG I+ ++ G+R I +TG+ +
Sbjct: 722 FCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDA 760
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 819 PYGDDSIAFVNSGMCQFKNVFLG-LTP----APYPRVANSQKCIRVGGKHNDLSFAGRDS 873
P D ++ F N+GM QFK++FLG + P A NSQKCIR GGKHNDL G+DS
Sbjct: 39 PLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSAVNSQKCIRAGGKHNDLDDVGKDS 98
Query: 874 YHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
YHHTFFEMLGNWSF DY+K++A + + E LT+ L RLY T+
Sbjct: 99 YHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQ-VYGLDPGRLYVTY 143
>sp|D3ZX08|SYAM_RAT Alanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Aars2
PE=2 SV=1
Length = 985
Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust.
Identities = 273/825 (33%), Positives = 415/825 (50%), Gaps = 99/825 (12%)
Query: 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYP 70
++R +FL +F + GH LV S+ + P GD S+ FVN+GM QFK +FLG A +
Sbjct: 36 AVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFR 95
Query: 71 RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFN-DYYKRDACRMALEFLTKPP 129
RVANSQKCVR GG+HNDL GRD HHTFFEMLGNW+F +Y+K++AC MA E LT+
Sbjct: 96 RVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV- 154
Query: 130 VSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCG 189
+P DRL+ +YF G + GL D ETRDIWL LGVP + G++ NFWEMG TGPCG
Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSLGVPASRVLSFGLQENFWEMGDTGPCG 214
Query: 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249
+EIHYD+ G L+E+WN+VF+ H R + ++ L + ++DTG+G
Sbjct: 215 PCTEIHYDLAG---------GMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMGL 265
Query: 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
ERLV +LQ K STYDTDLF PLL+ I + PY ++ +DT+YR+++D+ R
Sbjct: 266 ERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIRT 325
Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 366
++V +AD + P + LR ++R A+ S +V + G L + +A LG YPE
Sbjct: 326 LSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVA-TLGAAYPE 384
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK 426
+Q N +++++ E + + A + L G + + +
Sbjct: 385 LQK--NSVKVLIWEIANLVSEDEAAFLAS---------------------LQRGRRIIDR 421
Query: 427 QLARDPSITEISGDMAF--TLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ-KLNELKERS 483
+ R ++A+ +L G+ +++Q + K + L EQ E + R+
Sbjct: 422 TVKRLGPSDLFPAEVAWSLSLSGNLGIPLDLVQLMLEEKGVKLDTAGLEQLAQKEAQHRA 481
Query: 484 KAKAAS-------NVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVI 536
+ A+ +V ++ + + P TDD KY+Y N Y F + ++ +
Sbjct: 482 QQAEAAQEEGLCLDVHALEELHRQGIPTTDDSPKYNYSLRPNGD-YEFGLCEAQVLQL-- 538
Query: 537 GDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNT 596
++ +G ++ S+ GL+ D+TN YA GGQ D G YL T
Sbjct: 539 -------------YSETGTAVASVG--EGQRCGLLLDRTNFYAEQGGQASDRG--YLIRT 581
Query: 597 TQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLN 656
Q++ + G I+H +V G ++ VD R+GCM HT +HLLN
Sbjct: 582 GQQDVLFPVARAQVCGGFILHEAMAPECLQV--GDRVQLYVDKAWRMGCMVKHTATHLLN 639
Query: 657 AALRRVLTCTYQKSCRVFSDECALDFSVYGET-LSVDSVAAVEKYINDVIANQVQVDRRH 715
ALR+ L T ++ + E L F V +T L+ + + VE Y+ + + +
Sbjct: 640 WALRQTLGPTTEQRGSHLNPE-RLRFDVATQTPLTTEQLRTVESYVQEAVGQD-----KP 693
Query: 716 MRASELPFLTHLTVIPG-----EIYPDDV-----------ILIDISDKENVISREPCCGT 759
+ E+P L H IPG E+YPD V L S S E CCGT
Sbjct: 694 VYMEEVP-LAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQALAPASQAALQTSVELCCGT 752
Query: 760 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLS 804
H+ +TG + +IG + G+ + +TG+ ++ A E G+ LS
Sbjct: 753 HLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQQAREVGQSLS 797
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 7/107 (6%)
Query: 819 PYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRDS 873
P GD S+ FVN+GM QFK +FLG A + RVANSQKC+R GG+HNDL GRD
Sbjct: 61 PRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGRHNDLEDVGRDL 120
Query: 874 YHHTFFEMLGNWSF-NDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
HHTFFEMLGNW+F +Y+K++AC MA E LT+ +P DRL+ ++
Sbjct: 121 SHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQ-VYGIPEDRLWVSY 166
>sp|Q5JTZ9|SYAM_HUMAN Alanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1
SV=1
Length = 985
Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust.
Identities = 275/811 (33%), Positives = 406/811 (50%), Gaps = 86/811 (10%)
Query: 21 FLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANS 75
FL++F + GH LV S+ + P GD S+ FVN+GM QFK +FLG A + RVANS
Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105
Query: 76 QKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFN-DYYKRDACRMALEFLTKPPVSLPL 134
QKCVR GG HNDL GRD HHTFFEMLGNW+F +Y+K +AC MA E LT+ +P
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQV-YGIPE 164
Query: 135 DRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEI 194
+RL+ +YF G + GL D ETRDIWL LGVP + G + NFWEMG TGPCG +EI
Sbjct: 165 ERLWISYFDGDPKAGLDPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224
Query: 195 HYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVT 254
HYD+ G L+E+WN+VF+ H R + ++ PL + ++DTG+G ERLV
Sbjct: 225 HYDLAG---------GVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275
Query: 255 ILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVAL 314
+LQ K STYDTDLF PLL I++ A PY ++ DT+YR+++D+ R ++V +
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335
Query: 315 ADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSI 371
+D +FP + LR ++R A+ S ++ K G + L + E LGD YPE+Q +
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPG-FLGSLVPVVVETLGDAYPELQRNS 394
Query: 372 NKIQLILGEESRIFDNLRKAAVKEWKPLV-KTQPELEQFNIMEEPGLVLGVKYLTKQLAR 430
+I ++ E+ F A+++ + ++ +T L ++ P V L L
Sbjct: 395 AQIANLVSEDEAAF----LASLERGRRIIDRTLRTLGPSDMF--PAEVAWSLSLCGDLGL 448
Query: 431 DPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASN 490
+ E+ + D+ GL + L E + + + + K +
Sbjct: 449 PLDMVELMLEEKGVQLDSAGLER-------------LAQEEAQHRARQAEPVQKQGLWLD 495
Query: 491 VPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRH 550
V + + + P TDD KY+Y S Y F + ++ Q++ D A+
Sbjct: 496 VHALGELQRQGVPPTDDSPKYNYSLRP-SGSYEFGTCEAQVL------QLYTEDGTAV-- 546
Query: 551 ARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELAS 610
AS+ Q GL+ D+TN YA GGQ D G YL QE+ +
Sbjct: 547 ----ASVGKGQR-----CGLLLDRTNFYAEQGGQASDRG--YLVRAGQEDVLFPVARAQV 595
Query: 611 LEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQK 669
G I+H ++ G ++ VD RLGCM HT +HLLN ALR+ L T Q+
Sbjct: 596 CGGFILHEAVAPECLRL--GDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQ 653
Query: 670 SCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTV 729
+ ++ LD + L+ + + AVE + + + V +M E+P L
Sbjct: 654 GSHLNPEQLRLDVTTQ-TPLTPEQLRAVENTVQEAVGQDEAV---YM--EEVP-LALTAQ 706
Query: 730 IPG-----EIYPDDV-----------ILIDISDKENVISREPCCGTHVFNTGHIESCTVI 773
+PG E+YPD V L S S E CCGTH+ TG + +I
Sbjct: 707 VPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVII 766
Query: 774 GYKSYNHGVRSIKCLTGDSSKAAVENGKHLS 804
G + + G + +TG+ ++ A E G+ L+
Sbjct: 767 GDRQLSKGTTRLLAVTGEQAQQARELGQSLA 797
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 7/107 (6%)
Query: 819 PYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRDS 873
P GD S+ FVN+GM QFK +FLG A + RVANSQKC+R GG HNDL GRD
Sbjct: 66 PRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDL 125
Query: 874 YHHTFFEMLGNWSF-NDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
HHTFFEMLGNW+F +Y+K +AC MA E LT+ +P +RL+ ++
Sbjct: 126 SHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQ-VYGIPEERLWISY 171
>sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ala1 PE=1 SV=1
Length = 959
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 265/823 (32%), Positives = 400/823 (48%), Gaps = 109/823 (13%)
Query: 7 SSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTP 66
S V + IR +FL YF GHT+V SS ++PY D ++ F N+GM QFK +FLG
Sbjct: 5 SEVVNWPANEIRRTFLKYF-EDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVD 63
Query: 67 -----APYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMA 121
A R +SQKC+R GGKHNDL G+D+YHHT FEMLGNWSF DY+K++A MA
Sbjct: 64 PSSDFAKLKRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMA 123
Query: 122 LEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWE 181
+ LT L D+LY TYFGG ++ GL D E R +WL++G+ + +K NFWE
Sbjct: 124 WDLLTNV-YGLKKDQLYVTYFGGHEESGLEPDLEARQLWLDIGIDESRVIPGSLKDNFWE 182
Query: 182 MGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKN 241
MG GPCG SEIHYD G + VN D +++EIWNIVFI R ++ PL
Sbjct: 183 MGDQGPCGPCSEIHYDRIGN-RTVPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNR 241
Query: 242 YIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYR 301
++DTG+GFERLV+++QNKTS YDTD+F P+ I++++ A+PY + +DT+YR
Sbjct: 242 HVDTGMGFERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYR 301
Query: 302 MLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAE 358
+++D+ R +T A++D P+ + LR ++R F V G LS + E
Sbjct: 302 VVADHVRTLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFGVPIGNFFSRLSLTVVE 361
Query: 359 ILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLV 418
+GD +PE++ ++ ++ +L EE F + L + + EQ+
Sbjct: 362 QMGDFFPELKRKVDDVRELLDEEEESFS----------RTLDRGEKMFEQY--------- 402
Query: 419 LGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNE 478
+ PS T + G+ + LY+TYG ++ +A + + FE
Sbjct: 403 ------AAAAKKTPSKT-LQGNDVWRLYETYGFPVDLTHLMAEEAGIKIDEPGFEAAQAR 455
Query: 479 LKERSK--AKAASNVPDIDLMD---------LKHFPVTDDKYKYDYHYDTNSKRYTFPCL 527
KE SK +K S+ D+ ++D + P TDD +K++
Sbjct: 456 SKEISKQASKGGSSGDDLLVLDVHALGALSKMDDIPETDDVFKHN--------------- 500
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQ--- 584
+L ++ G I H + G + +GL+ D+TN YA GGQ
Sbjct: 501 SVSLKSVIKG----------IYH-KGGFQKSTEGFNSGEQLGLLLDRTNFYAEQGGQEYD 549
Query: 585 -----IDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDA 639
ID + +TN G V L + +GN+ + V E D
Sbjct: 550 TGHIVIDGVADFRVTNVQVYAGYV-------LHTGFLEYGNLTVNDSVV------CEYDE 596
Query: 640 RMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVE 698
R M HT +H+LN ALR L Q+ V ++ DFS Y ++ +D + VE
Sbjct: 597 IRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFS-YKSSIPIDKLLLVE 655
Query: 699 KYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP--- 755
Y N+VI + + V + + S+ + L + GE+YPD V ++ I + + +EP
Sbjct: 656 NYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTLLQEPKKP 715
Query: 756 ---------CCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT 789
C GTH +G I+ ++ G+R I +T
Sbjct: 716 DWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVT 758
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 70/107 (65%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTP-----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
IPY D ++ F N+GM QFK +FLG A R +SQKCIR GGKHNDL G+D
Sbjct: 37 IPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLKRACDSQKCIRAGGKHNDLEDVGKD 96
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
+YHHT FEMLGNWSF DY+K++A MA + LT L D+LY T+
Sbjct: 97 NYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTN-VYGLKKDQLYVTY 142
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3
Length = 983
Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust.
Identities = 267/817 (32%), Positives = 399/817 (48%), Gaps = 98/817 (11%)
Query: 6 ISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG-L 64
I + + ++R++FLDYF ++ H VKSSP+VP+ D ++ F N+GM Q+K +FLG +
Sbjct: 28 IGDKQKWTATNVRNTFLDYF-KSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTV 86
Query: 65 TPAP----YPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRM 120
PA R NSQKC+R GGKHNDL G+DSYHHTFFEMLGNWSF DY+K++A
Sbjct: 87 DPASDFYTLKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITY 146
Query: 121 ALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFW 180
+ LT+ +P DRLY TYF G ++ GL D E R++W +GVP DHI K NFW
Sbjct: 147 SWTLLTEV-YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNVGVPDDHILPGNAKDNFW 205
Query: 181 EMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSK 240
EMG GPCG SEIHYD G ++A + VN D D++E+WN+VFI R ++ PL
Sbjct: 206 EMGDQGPCGPCSEIHYDRIGGRNAA-SLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPA 264
Query: 241 NYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSY 300
+IDTG+GFERLV++LQ+ S YDTD+F PL E I++++ +PY F +++ +DT+Y
Sbjct: 265 KHIDTGMGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAY 324
Query: 301 RMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIA 357
R+L+D+ R +T ALAD P+ + LR ++R + G L+ +
Sbjct: 325 RVLADHVRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLI 384
Query: 358 EILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGL 417
+ D++PE+ + IL EE F KT E+
Sbjct: 385 SQVQDIFPELAKDPAFLFEILDEEEASF--------------AKTLDRGER--------- 421
Query: 418 VLGVKYLTKQLARDPSITE---ISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ 474
L ++ A S TE + G + LYDTYG ++ + +A + L + FE+
Sbjct: 422 ------LFEKYASAASKTESKTLDGKQVWRLYDTYGFPVDLTELMAEEQGLKIDGPGFEK 475
Query: 475 KLNELKERSKAKAAS--------NVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPC 526
E E SK NV ++ ++ P T+D++KY
Sbjct: 476 AKQESYEASKRGGKKDQSDLIKLNVHELSELNDAKVPKTNDEFKYG-------------- 521
Query: 527 LDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQID 586
N+ G ++ G + E G+I DKT YA GGQ
Sbjct: 522 -SANVEGTIL-------------KLHDGTNFVDEITEPGKKYGIILDKTCFYAEQGGQEY 567
Query: 587 DIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 646
D G + + + N VE +L + G + H G++ K++ G D R
Sbjct: 568 DTGKIVIDDAAEFN--VENVQLYN--GFVFHTGSLEEG-KLSVGDKIIASFDELRRFPIK 622
Query: 647 RAHTTSHLLNAALRRVLTCTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 705
HT +H+LN AL+ L QK V ++ DFS + + +S + + VE N+ I
Sbjct: 623 NNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFS-HKKAVSNEELKKVEDICNEQI 681
Query: 706 ANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDI------------SDKENVISR 753
+QV + + + + + GE YPD V ++ + +++ S
Sbjct: 682 KENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPANEEWTKYSI 741
Query: 754 EPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTG 790
E C GTHV TG I+ ++ G+R I +TG
Sbjct: 742 EFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTG 778
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLG-LTPAP----YPRVANSQKCIRVGGKHNDLSFAGRD 872
+P+ D ++ F N+GM Q+K +FLG + PA R NSQKCIR GGKHNDL G+D
Sbjct: 61 VPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTLKRAYNSQKCIRAGGKHNDLEDVGKD 120
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
SYHHTFFEMLGNWSF DY+K++A + LT+ +P DRLY T+
Sbjct: 121 SYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTE-VYGIPKDRLYVTY 166
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=alaS PE=2 SV=1
Length = 946
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/821 (30%), Positives = 396/821 (48%), Gaps = 99/821 (12%)
Query: 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG-LTP----APYP 70
IR +F+D+F HT V SS ++P+ D ++ F N+GM QFK +FLG + P A
Sbjct: 5 QIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQAKLK 64
Query: 71 RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPV 130
R NSQKC+R GGKHNDL G+D+YHHTFFEMLGNWSF +Y+K++A A E LT+
Sbjct: 65 RAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLTE-VY 123
Query: 131 SLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
L +RLY TYF G + GL D E +++WL+ +P + + GMK NFWEMG GPCG
Sbjct: 124 KLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY-LPEERVLPFGMKENFWEMGDQGPCGP 182
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIHYD K E + VNAD LIEIWN+VFI + R + ++ PL + ++DTG+G E
Sbjct: 183 CSEIHYD-KVEGRDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTGMGLE 241
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSG-AKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
RL +I+Q + YDTD+F+P+ I++V+G +PYG + +D +YR+++D+ R
Sbjct: 242 RLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIADHIRT 301
Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 366
+T ++AD P + LR ++R A+ + G K + IA G+ +PE
Sbjct: 302 LTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIAN-FGEFFPE 360
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK 426
++ I+++L E +F+ + + E++ ++K
Sbjct: 361 LRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKKSVN--------------------- 399
Query: 427 QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAK 486
+S + A+ L YG ++ +A K + + +E E + +
Sbjct: 400 --------NTLSAENAYFLSTCYGFPIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKR 451
Query: 487 AASNVPDIDL-------MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQ 539
++ L + TDD +KY H + + + I G
Sbjct: 452 QKEKKVELTLGAEANAWLKNNDIKPTDDSFKYKQHE-----------IQSVIKAIWNG-- 498
Query: 540 VFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQE 599
K + A G I G++ + +N YA GGQI DIG L+ +
Sbjct: 499 -----KEFVDTAPKGTLI-----------GVVLENSNFYAEQGGQIYDIG--QLSFIDDQ 540
Query: 600 NGKVEIGELASLEGKIVHFGNV---VSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLN 656
++ + G ++H G + S KV G + VD R M HT++H++N
Sbjct: 541 KTAFDVKDCKVFGGYVLHIGYLSYECDSLKV--GDRVELTVDYTRRSPIMSNHTSTHMVN 598
Query: 657 AALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715
AL+ +L Q+ V + DFS +G ++ D + +++ +ND I Q+ V +
Sbjct: 599 YALKNILGDGIDQRGSFVDAQRFRFDFS-FGRAITKDELIKIDQIVNDQIFKQLDVHAKE 657
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP------------CCGTHVFN 763
+ + + L + GE+YPD V ++ + + P C GTH+ N
Sbjct: 658 VGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQLIENPTNPEWANYSIEFCGGTHLSN 717
Query: 764 TGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLS 804
T E T+ ++ GVR I +TG + +A+E K L
Sbjct: 718 TKQAELFTITSEETLGAGVRRIVAVTGSEAASAIELNKELE 758
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLG-LTP----APYPRVANSQKCIRVGGKHNDLSFAGRD 872
IP+ D ++ F N+GM QFK +FLG + P A R NSQKCIR GGKHNDL G+D
Sbjct: 29 IPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQAKLKRAVNSQKCIRAGGKHNDLDDVGKD 88
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
+YHHTFFEMLGNWSF +Y+K++A A E LT+ L +RLY T+
Sbjct: 89 TYHHTFFEMLGNWSFGNYFKKEAITWAWELLTE-VYKLDKERLYVTY 134
>sp|A1BD33|SYA_CHLPD Alanine--tRNA ligase OS=Chlorobium phaeobacteroides (strain DSM
266) GN=alaS PE=3 SV=1
Length = 888
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 270/810 (33%), Positives = 400/810 (49%), Gaps = 126/810 (15%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S+ IR SFLD+F + +GHT+V+S+P++P D ++ F N+GM QFK+VFL PY R
Sbjct: 1 MNSREIRQSFLDFF-DRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A++QKC+R GKHNDL GRD+YHHTFFEMLGNWSF DYYK++A A E LT
Sbjct: 60 AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLT-SVWH 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T + DEE+ +W E +P DHI K K NFWEMG TGPCG
Sbjct: 119 LPKERLYATVY--------YDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGP 170
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIH D+ E S VNA +IE+WN+VFI + R + + PL + ++DTG+GFE
Sbjct: 171 CSEIHIDLT-EDGSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFE 229
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++Q K S YDTD+F PL + I +++G ++ S D + R+L+D++R +
Sbjct: 230 RVCAVMQGKASNYDTDVFRPLFDRITEITGV-----SYNASLDDPSDIAMRVLADHARTL 284
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDVYPEI 367
T AL D P + + R V +L + G L+ L +A +GDV+PE+
Sbjct: 285 TFALTDGAMP--SNEGRGYVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPEL 342
Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
+ + I+ E F L +E FN L+ V
Sbjct: 343 RKQQQAVSRIIRAEEESF-------------LATLDRGIEIFN-----ELIAAV------ 378
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 487
R T +SGD AF LYDT+G ++ + +AA + E F++ + E K R++
Sbjct: 379 --RSRGTTVVSGDDAFRLYDTFGFPLDLTRLMAAEAGFEVDEEGFDRCMKEQKTRARQ-- 434
Query: 488 ASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHA 547
D D +H + ++ + + + S + L+ L I
Sbjct: 435 -------DRRDKQHLKGDEGEWTW-FSAERTSVFTGYHSLE-ELASI------------- 472
Query: 548 IRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG----VAY--LTNTTQENG 601
+G SI S +L ++ D+T YA +GGQ D G AY + T+++G
Sbjct: 473 -----TGVSIFSDRLL------VVLDRTPFYAESGGQCGDRGWIETAAYRLRVSDTRKDG 521
Query: 602 KVEIGELASLEGKIVHF----GNVVSSFKVTPG--------LTSRVEVDARMRLGCMRAH 649
+ IVH + VS ++P L R VD R G R H
Sbjct: 522 DM-----------IVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQGTERNH 570
Query: 650 TTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
T +HLL+AALRR L QK V S+ DFS + L+ + +A VE +N+ I +
Sbjct: 571 TATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFAR-LTSEELAIVESEVNEQIRSA 629
Query: 709 VQVDRRHMRASELPFLTHLT----VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 764
V ++ ++P+ + G+ Y D V +++I+ +S E C GTHV +
Sbjct: 630 EPV----VKHQDIPYDEAIARGALAFFGDKYADRVRVVEIAG----LSVELCGGTHVDSI 681
Query: 765 GHIESCTVIGYKSYNHGVRSIKCLTGDSSK 794
G I ++ S GVR I+ LTG +++
Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAE 711
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
IP D ++ F N+GM QFK+VFL PY R A++QKCIR GKHNDL GRD+YHHT
Sbjct: 28 IPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRAADTQKCIRASGKHNDLEDVGRDTYHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGNWSF DYYK++A A E LT LP +RLY T
Sbjct: 88 FFEMLGNWSFGDYYKKEAISWAWELLT-SVWHLPKERLYAT 127
>sp|A4SGJ6|SYA_PROVI Alanine--tRNA ligase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=alaS PE=3 SV=2
Length = 885
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 272/812 (33%), Positives = 402/812 (49%), Gaps = 122/812 (15%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S IR SFLD+F + H +V+S+P++P D ++ F N+GM QFK+VFL Y R
Sbjct: 1 MKSSDIRQSFLDFFVG-KSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A++QKC+R GKHNDL GRD+YHHTFFEMLGNWSF DYYK +A A E LT
Sbjct: 60 AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLT-VVWK 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPR-DHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T + D+E+ IW E R DHI + G K NFWEMG TGPCG
Sbjct: 119 LPEERLYATVYHD--------DDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGP 170
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIH D+ + S A VNAD IE+WN+VFI + R + PL + ++DTG+GFE
Sbjct: 171 CSEIHIDLTPD-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFE 229
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++Q K+S YDTD+F PL +TI +++G + YG + D + R+++D++R +
Sbjct: 230 RVCAVMQGKSSNYDTDVFRPLFDTITELTGVE-YGASMHDPQ----DIAMRVIADHARTL 284
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDVYPEI 367
+ AL+D P + + R V +L + G ++ L +A+ +GDV+PE+
Sbjct: 285 SFALSDGAMP--SNEGRGYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPEL 342
Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
+D + + I+ E F LV +E FN GLV V
Sbjct: 343 RDRQDAVARIVKAEEESF-------------LVTLDRGIEIFN-----GLVGKV------ 378
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 487
R + + G+ AF LYDTYG ++ + +A++ L + E FE+ + E K R++
Sbjct: 379 --RGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGLQVDGEGFERCMQEQKTRARQ-- 434
Query: 488 ASNVPDIDLMDLKHFPVTDDKYKY--DYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDK 545
D + + + +++ D H T Y D +++GI
Sbjct: 435 -------DRREKQRGGAEEGSWEWFSDLHA-TEFTGYDGLEADASIIGI----------- 475
Query: 546 HAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENG--KV 603
+RS ++ L+ D+T YA +GGQ D G E G ++
Sbjct: 476 -----SRSKKNL-----------LLVLDRTPFYAESGGQTGDRGWI-------ETGEYRL 512
Query: 604 EIGELASLEGKIVH-----FGNVVSS------FKVTPGLTSRVEVDARMRLGCMRAHTTS 652
E+ + VH F NV S V PG VD ++R R HT +
Sbjct: 513 EVTDTQKDGDSFVHVVTRAFDNVRDSEADPADIAVGPGRV-HASVDRKLRQATERNHTAT 571
Query: 653 HLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQV 711
HLL+A LR L QK V + DFS + + L+ + + AVE +ND I Q +
Sbjct: 572 HLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSK-LTPEEIDAVESAVNDCI-RQAEA 629
Query: 712 DRRHMRASELPFLTHLT----VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHI 767
+H +++P+ +T G+ Y D V +++I IS E C GTHV N G I
Sbjct: 630 TLKH---ADVPYDDAITKGALAFFGDKYADLVRVVEIPG----ISVELCGGTHVDNVGQI 682
Query: 768 ESCTVIGYKSYNHGVRSIKCLTGDSSKAAVEN 799
++G S GVR I+ LTG +++ + N
Sbjct: 683 GLFKIVGESSVAAGVRRIEALTGRAAEELMWN 714
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
IP D ++ F N+GM QFK+VFL Y R A++QKCIR GKHNDL GRD+YHHT
Sbjct: 28 IPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRAADTQKCIRASGKHNDLEDVGRDTYHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGNWSF DYYK +A A E LT LP +RLY T
Sbjct: 88 FFEMLGNWSFGDYYKEEAITWAWELLT-VVWKLPEERLYAT 127
>sp|Q8KG04|SYA_CHLTE Alanine--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=alaS PE=3 SV=1
Length = 885
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 257/805 (31%), Positives = 398/805 (49%), Gaps = 115/805 (14%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S+ IR SFLD+F + H +V+S+P++P D ++ F N+GM QFK+VFLG Y R
Sbjct: 1 MNSREIRQSFLDFFAGKE-HRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A++QKC+R GKHNDL GRD+YHHTFFEMLGNWSF DYYK++A A E +T+
Sbjct: 60 AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTE-VWK 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T + DEE+ +W E + HI K G K NFWEMG TGPCG
Sbjct: 119 LPKERLYATVYHD--------DEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGP 170
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIH D+ + S VN + +IE+WN+VFI + R + T+VPL + ++DTG+GFE
Sbjct: 171 CSEIHIDLTPDGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFE 229
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ +LQ K+S YD+D+F PL + I +++G +T S + D + R+++D+ R +
Sbjct: 230 RVAAVLQGKSSNYDSDVFAPLFDRITELTGT-----VYTASLDSPSDIAMRVIADHCRTL 284
Query: 311 TVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV--KELSYNIAEIL----G 361
T AL+D P + LR ++R A+ + G L + + Y + E+L G
Sbjct: 285 TFALSDGAMPGNEGRGYVLRRILRRAVRYA--------GTLGCHEPIIYKMVEVLVRTMG 336
Query: 362 DVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
DV+PE++ ++ I+ E F LV E FN +V +
Sbjct: 337 DVFPELEKQQATVEKIIRAEEESF-------------LVTLGRGTEIFN-----EVVADM 378
Query: 422 KYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKE 481
K T ISG AF LYDT+G ++ + +AA L + FE + E K
Sbjct: 379 KT--------AGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGLGIDEAGFEHCMMEQKT 430
Query: 482 RSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVF 541
R++ D K K D ++ P T VG +
Sbjct: 431 RAR--------------------MDRKGKMQMQDDGGEWQWFAPEAPTTFVGYDM----- 465
Query: 542 CIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG----VAYLTNT- 596
+ A++ + ++ + + ++ D+T YA +GGQ+ D G Y +
Sbjct: 466 ---------LETEATLVAARVSGDKLL-MVLDQTPFYAESGGQVGDHGTLETAGYRLDVT 515
Query: 597 -TQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
T+++G+ + + S K+ + ++ + VD R+ R HT +HLL
Sbjct: 516 DTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVATERNHTATHLL 575
Query: 656 NAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRR 714
+AALR+VL QK V + DFS + + +S + + VE +N I V +
Sbjct: 576 HAALRKVLGEHVQQKGSLVTPERLRFDFSHFSK-VSAEELEQVEHEVNAEIRKAASVTKH 634
Query: 715 HMRASELPFLTHLTVIP----GEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESC 770
+++P+ L + G+ Y D V ++++ IS E C GTHV N G I
Sbjct: 635 ----ADVPYEEALALGALAFFGDKYADRVRVVEVPG----ISIELCGGTHVGNIGQIGMV 686
Query: 771 TVIGYKSYNHGVRSIKCLTGDSSKA 795
++ S G+R I+ +TG +++A
Sbjct: 687 KIVSESSVAAGIRRIEAVTGAAAEA 711
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
IP D ++ F N+GM QFK+VFLG Y R A++QKCIR GKHNDL GRD+YHHT
Sbjct: 28 IPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRAADTQKCIRASGKHNDLEDVGRDTYHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGNWSF DYYK++A A E +T+ LP +RLY T
Sbjct: 88 FFEMLGNWSFGDYYKKEAIGWAWELMTE-VWKLPKERLYAT 127
>sp|O67323|SYA_AQUAE Alanine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=alaS PE=1
SV=1
Length = 867
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 276/827 (33%), Positives = 403/827 (48%), Gaps = 130/827 (15%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L + IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 3 LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 61
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ +
Sbjct: 62 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 120
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP ++LY + + DEE IW E +G+P + I + G + NFW+MG GPCG
Sbjct: 121 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 172
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +GE R +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 173 SSEIYVD-RGEEYEGDER-------YLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ K S ++ D+ PL++ E+VSG K YG F T D + R+++D+ R I
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 277
Query: 311 TVALADNMFPDATAK---LRNVVRDAL-----LISEDVFKVKQGKLVKELSYNIAEILGD 362
T A++D + P + +R ++R A+ L E+ F K LV +I+ +
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLV-------VDIMKE 330
Query: 363 VYPEIQDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
YPE++ S ++ ++ GEE R L+ G+
Sbjct: 331 PYPELELSREFVKGIVKGEEKRFIKTLKA-----------------------------GM 361
Query: 422 KYLTK--QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479
+Y+ + Q A + +SG FT YDTYG ++I E+A K L + E F+ +L E
Sbjct: 362 EYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQ 421
Query: 480 KERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDY-HYDTNSKRYTFPC-----LDTNLVG 533
+ER++ KHF V K K Y H K F ++ +VG
Sbjct: 422 RERAR---------------KHFKVEAKKVKPVYSHLKELGKTSAFVGYEHMEWESQVVG 466
Query: 534 IVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYL 593
+V G+ + ++ G ++ +T Y GGQI D G+
Sbjct: 467 LVKGEGLVS----ELKEGEEGE--------------VVLKETPFYPEGGGQIGDAGI--- 505
Query: 594 TNTTQENGKVEIGELASLEGKIVHFGNVV-SSFKVTPGLTSRVEVDARMRLGCMRAHTTS 652
+ + KVE + + EG IVH G V+ + KV G T VD R MR HT +
Sbjct: 506 IESDKALFKVEDTQKPT-EGIIVHIGKVLKGTLKV--GDTVHARVDKERRWDIMRNHTAT 562
Query: 653 HLLNAALRRVLTCTYQKSCRVFSDE-CALDFSVYGETLSVDSVAAVEKYINDVIANQVQV 711
HLL+AALR VL +++ + +D+ DF+ + L+ + + VE+ +N+ I + V
Sbjct: 563 HLLHAALRNVLGEHVRQAGSLVADKYLRFDFTHFS-ALTEEELKRVEELVNEKIRENLPV 621
Query: 712 DRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCT 771
+ M A + T I E Y + V +I + S+E C GTHV TG I
Sbjct: 622 NVMEM-AYDEALKTGAIAIFEEKYGERVRVISCGE----FSKELCGGTHVSATGDIGYFK 676
Query: 772 VIGYKSYNHGVRSIKCLTGDSSKAAVENG-KHLSTAASFSQILNVGN 817
+I S GVR I TG + +VE K T S L VG
Sbjct: 677 IISESSVGAGVRRIVAQTG---RWSVETAFKEHQTLKKASSALGVGE 720
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 30 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K++A A EF+T+ + LP ++LY +
Sbjct: 90 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVS 129
>sp|Q5LHE6|SYA_BACFN Alanine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=alaS PE=3 SV=1
Length = 872
Score = 363 bits (931), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 265/793 (33%), Positives = 382/793 (48%), Gaps = 109/793 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L +K R SF ++F ++GH +V S+P+V D ++ F N+GM QFK++ LG PA Y R
Sbjct: 2 LTAKETRDSFKNFF-ESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
VA+SQKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E+L +
Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDV-LK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
L + LY T F GS + GL D E W E +P+DHI NFWEMG TGPCG
Sbjct: 120 LNPEHLYATVFEGSPEEGLERDNEAASYW-EQYLPKDHIINGNKHDNFWEMGDTGPCGPC 178
Query: 192 SEIHYDMKGEPSSALAR------VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDT 245
SEIH D++ P+ A+ VN D +IEIWN+VF+ + R + T+ PL IDT
Sbjct: 179 SEIHIDLR--PAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDT 236
Query: 246 GLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSD 305
G+GFERL LQ KTS YDTD+F PL++ I +++G + YG+ D + R+++D
Sbjct: 237 GMGFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTE-YGKNEQN------DIAMRVIAD 289
Query: 306 YSRMITVALADNMFPD---ATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGD 362
+ R I ++ D P A +R ++R A+ KQ + K L I + +GD
Sbjct: 290 HIRTIAFSITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLI-DSMGD 348
Query: 363 VYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVK 422
YPE+ A KE V + E +E G++
Sbjct: 349 AYPEL-----------------------IAQKELIEKVIKEEEESFLRTLE-----TGIR 380
Query: 423 YLTKQLA--RDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELK 480
L K +A + TEISG AFTLYDT+G ++ + + +T+ E F+ ++ + K
Sbjct: 381 LLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTELILRENGMTVNVEEFDAEMQQQK 440
Query: 481 ERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDY-HYDTNSKRYTFPCLDTNLVGIVIGDQ 539
+R++ AA D ++ T + YDY Y+T+ RY
Sbjct: 441 QRARNAAAIETGDWIILK----EGTTEFVGYDYTEYETSILRYR---------------- 480
Query: 540 VFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQE 599
++ ++ ++ D T YA +GGQ+ D GV L N E
Sbjct: 481 -------------------QVKQKNQTLYQIVLDYTPFYAESGGQVGDTGV--LVN---E 516
Query: 600 NGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAAL 659
+E+ + +H + P + VD R C H+ +HLL+ AL
Sbjct: 517 FETIEVIDTKKENNLPIHITKKLPEHPEAPMMAC---VDTDKRAACAANHSATHLLDEAL 573
Query: 660 RRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI-ANQVQVDRRHMR 717
R VL QK V D DFS + + ++ + + VE +N I AN + R++
Sbjct: 574 REVLGEHVEQKGSLVTPDSLRFDFSHF-QKVTDEELRKVEHLVNAKIRANVPLQEHRNIP 632
Query: 718 ASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS 777
E L + + GE Y D V +I S E C GTHV TG+I +I S
Sbjct: 633 IEEAKELGAIALF-GEKYGDHVRVIQFGS-----SIEFCGGTHVAATGNIGMVKIISESS 686
Query: 778 YNHGVRSIKCLTG 790
GVR I+ TG
Sbjct: 687 VAAGVRRIEAYTG 699
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 62/82 (75%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F N+GM QFK++ LG PA Y RVA+SQKC+RV GKHNDL G D+YHHT FEM
Sbjct: 33 DPTLMFTNAGMNQFKDIILGNHPAKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEM 92
Query: 882 LGNWSFNDYYKRDACRMALEFL 903
LGNWSF DY+K++A A E+L
Sbjct: 93 LGNWSFGDYFKKEAISWAWEYL 114
>sp|Q64YB4|SYA_BACFR Alanine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=alaS
PE=3 SV=1
Length = 872
Score = 362 bits (930), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 265/793 (33%), Positives = 382/793 (48%), Gaps = 109/793 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L +K R SF ++F ++GH +V S+P+V D ++ F N+GM QFK++ LG PA Y R
Sbjct: 2 LTAKETRDSFKNFF-ESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
VA+SQKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E+L +
Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDV-LK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
L + LY T F GS + GL D E W E +P+DHI NFWEMG TGPCG
Sbjct: 120 LNPEHLYATVFEGSPEEGLERDNEAASYW-EQYLPKDHIINGNKHDNFWEMGDTGPCGPC 178
Query: 192 SEIHYDMKGEPSSALAR------VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDT 245
SEIH D++ P+ A+ VN D +IEIWN+VF+ + R + T+ PL IDT
Sbjct: 179 SEIHIDLR--PAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDT 236
Query: 246 GLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSD 305
G+GFERL LQ KTS YDTD+F PL++ I +++G + YG+ D + R+++D
Sbjct: 237 GMGFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTE-YGKNEQN------DIAMRVIAD 289
Query: 306 YSRMITVALADNMFPD---ATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGD 362
+ R I ++ D P A +R ++R A+ KQ + K L I + +GD
Sbjct: 290 HIRTIAFSITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLI-DSMGD 348
Query: 363 VYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVK 422
YPE+ A KE V + E +E G++
Sbjct: 349 AYPEL-----------------------IAQKELIEKVIKEEEESFLRTLE-----TGIR 380
Query: 423 YLTKQLA--RDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELK 480
L K +A + TEISG AFTLYDT+G ++ + + +T+ E F+ ++ + K
Sbjct: 381 LLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTELILRENGMTVNVEEFDAEMQQQK 440
Query: 481 ERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDY-HYDTNSKRYTFPCLDTNLVGIVIGDQ 539
+R++ AA D ++ T + YDY Y+T+ RY
Sbjct: 441 QRARNAAAIETGDWIILK----EGTTEFVGYDYTEYETSILRYR---------------- 480
Query: 540 VFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQE 599
++ ++ ++ D T YA +GGQ+ D GV L N E
Sbjct: 481 -------------------QVKQKNQTLYQIVLDYTPFYAESGGQVGDTGV--LVN---E 516
Query: 600 NGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAAL 659
+E+ + +H + P + VD R C H+ +HLL+ AL
Sbjct: 517 FETIEVIDTKKENNLPIHITKKLPEHPEAPMMAC---VDTDKRAACAANHSATHLLDEAL 573
Query: 660 RRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI-ANQVQVDRRHMR 717
R VL QK V D DFS + + ++ + + VE +N I AN + R++
Sbjct: 574 REVLGEHVEQKGSLVTPDSLRFDFSHF-QKVTDEELRKVEHLVNAKIRANVPLQEHRNIP 632
Query: 718 ASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS 777
E L + + GE Y D V +I S E C GTHV TG+I +I S
Sbjct: 633 IEEAKELGAIALF-GEKYGDHVRVIQFGS-----SIEFCGGTHVAATGNIGMVKIISESS 686
Query: 778 YNHGVRSIKCLTG 790
GVR I+ TG
Sbjct: 687 VAAGVRRIEAYTG 699
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 62/82 (75%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F N+GM QFK++ LG PA Y RVA+SQKC+RV GKHNDL G D+YHHT FEM
Sbjct: 33 DPTLMFTNAGMNQFKDIILGNHPAKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEM 92
Query: 882 LGNWSFNDYYKRDACRMALEFL 903
LGNWSF DY+K++A A E+L
Sbjct: 93 LGNWSFGDYFKKEAISWAWEYL 114
>sp|A6LEZ8|SYA_PARD8 Alanine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=alaS PE=3 SV=1
Length = 873
Score = 361 bits (926), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 263/799 (32%), Positives = 398/799 (49%), Gaps = 107/799 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L +K IR SF +F + + H +V S+P+V GD ++ F N+GM QFK++ LG P YPR
Sbjct: 2 LTAKEIRESFKQFFASKE-HQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
VA+SQKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E+L + +
Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEV-LK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
L +RLY T F GS GL D E W E +P+DHI NFWEMG TGPCG
Sbjct: 120 LNPERLYATVFEGSPAEGLDRDNEAAGYW-EQYLPKDHILNGNKHDNFWEMGDTGPCGPC 178
Query: 192 SEIHYDMKGEPSSALAR----VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247
SEIH D++ + A VN D +IEIWN+VF+ R + ++ PL IDTG+
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238
Query: 248 GFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYS 307
GFERL LQ KTS YDTD+F P+++ I ++G T+ T + D+ + R+++D+
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGT-----TYGTDKQQDI--AMRVIADHI 291
Query: 308 RMITVALADNMFPD---ATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVY 364
R I A+ D P A +R ++R A+ K+ + K L I E +GD Y
Sbjct: 292 RTIAFAITDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLI-ETMGDAY 350
Query: 365 PEI--QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVK 422
PE+ Q ++ + + EES ++T L G++
Sbjct: 351 PELIAQKTLIEKVIKEEEES----------------FLRT--------------LETGIR 380
Query: 423 YLTKQLARDPSI--TEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELK 480
L K++ + T ++G AFTLYDTYG ++ + + + E F + + + K
Sbjct: 381 LLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTELILRENGMEADIEEFNKAMQKQK 440
Query: 481 ERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQV 540
ER++ AA + D + LK D + K+ +G +
Sbjct: 441 ERARNAAA--IETGDWITLK-----DGECKF------------------------VGYDL 469
Query: 541 FCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQEN 600
F + +R+ + I+ ++ ++ D+T YA GGQ+ D G +L ++
Sbjct: 470 FECEAEILRYRQ-------IKQKNKVLYQIVLDQTPFYAEMGGQVGDTG--WL---IADD 517
Query: 601 GKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALR 660
K+++ + VH + VT T+++ V R++ C H+ +HLL+ ALR
Sbjct: 518 EKIDVIDTKRENNLPVHLVTKLPK-DVTATFTAKINVKKRIQCEC--NHSATHLLHEALR 574
Query: 661 RVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI-ANQVQVDRRHMRA 718
VL T QK V D DFS + + ++ + + VE + + I AN + R+M
Sbjct: 575 EVLGTHVEQKGSYVSPDSLRFDFSHF-QKVTDEEIRKVEILVGEKIRANFPLEEHRNMPI 633
Query: 719 SELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY 778
+E L + + GE Y D+V ++ S E C GTH+ TG I S VIG S
Sbjct: 634 AEAKALGAMALF-GEKYGDEVRVVKYGS-----SVELCGGTHIPATGMIGSLRVIGESSI 687
Query: 779 NHGVRSIKCLTGDSSKAAV 797
GVR I+ +T + ++ V
Sbjct: 688 AAGVRRIEAVTAEGAEQFV 706
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 821 GDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFE 880
GD ++ F N+GM QFK++ LG P YPRVA+SQKC+RV GKHNDL G D+YHHT FE
Sbjct: 32 GDPTLMFTNAGMNQFKDIILGNVPRKYPRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFE 91
Query: 881 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
MLGNWSF DY+K++A A E+L + + L +RLY T
Sbjct: 92 MLGNWSFGDYFKKEAINWAWEYLVE-VLKLNPERLYAT 128
>sp|Q9XDM3|SYA_AQUPY Alanine--tRNA ligase OS=Aquifex pyrophilus GN=alaS PE=3 SV=1
Length = 871
Score = 360 bits (924), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 258/787 (32%), Positives = 384/787 (48%), Gaps = 102/787 (12%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 3 FSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 61
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ +
Sbjct: 62 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 120
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY + + DEE IW E +G+P + I + G + NFW+MG TGPCG
Sbjct: 121 LPKERLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGP 172
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 173 SSEIYVDR--------GEEYEGEERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ K S ++ D+ PL+E E+VSG K YG F T D + R+++D+ R I
Sbjct: 225 RIASVLQGKNSNFEIDIIYPLIEFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 277
Query: 311 TVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 367
T A++D + P + +R ++R A+ + + + L K + + +I+ + YPE+
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYQL-GITEPFLYKGIDL-VVDIMKEPYPEL 335
Query: 368 QDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK 426
+ S + ++ ++ GEE R LR +E + E L G K LT
Sbjct: 336 ELSRDFVKGIVKGEEERFIRTLRSG--------------MEYIQEVIEKALSEGRKTLT- 380
Query: 427 QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAK 486
G FT YDTYG ++IQE+A K L + E F+ +L E +ER++
Sbjct: 381 ------------GKEVFTAYDTYGFPVDLIQEIAKEKGLEIDLEGFQCELEEQRERARKS 428
Query: 487 AASNVPDID--LMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCID 544
++ LK +T Y+ H + +T ++GI++GD++
Sbjct: 429 FKIETKEVKPVYAHLKELGITSRFVGYE-HLE----------YETEVLGIIVGDEIVSEI 477
Query: 545 KHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVE 604
K +T Y GGQI D G+ T + KVE
Sbjct: 478 KEGEEGEII------------------LRETPFYPEGGGQIGDSGI---IETDKGIFKVE 516
Query: 605 IGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT 664
+ + EG IVH G ++ K++ VD R MR HT +HLL+AALR +L
Sbjct: 517 DTQRPT-EGIIVHIGKLLKG-KISVKDIVHARVDKERRWDIMRNHTATHLLHAALRNLLG 574
Query: 665 CTYQKSCRVFSDE-CALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPF 723
+++ + +D+ DF+ + L+ + + +E+ +N+ I + V M A +
Sbjct: 575 EHVRQAGSLVADKYLRFDFTHFS-PLTEEEIKRIEELVNEKIRENLPVSVMEM-AYQEAL 632
Query: 724 LTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVR 783
T I E Y + V +I + S+E C GTHV TG I +I S GVR
Sbjct: 633 QTGAIAIFEEKYGERVRVISCGE----FSKELCGGTHVSATGDIGYFKIISESSVGAGVR 688
Query: 784 SIKCLTG 790
I TG
Sbjct: 689 RIVAQTG 695
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 30 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K++A A EF+T+ + LP +RLY +
Sbjct: 90 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKERLYVS 129
>sp|Q3ATN3|SYA_CHLCH Alanine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=alaS PE=3 SV=1
Length = 886
Score = 359 bits (921), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 265/813 (32%), Positives = 394/813 (48%), Gaps = 132/813 (16%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S IR SFLD+F +GHT+V+S+P++P D ++ F N+GM QFK+VFL PY R
Sbjct: 1 MKSHEIRQSFLDFFAQ-KGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A++QKC+R GKHNDL GRD+YHHTFFEMLGNWSF DYYK +A A E T
Sbjct: 60 AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFT-VVWK 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T + D+E+ IW E + DHI + G K NFWEMG TGPCG
Sbjct: 119 LPKERLYATVY--------QDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGP 170
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIH D+ + S VN +IE+WN+VFI + R S + PL K ++DTG+GFE
Sbjct: 171 CSEIHIDLTPD-GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFE 229
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+V ++Q K S YD+D+F PL + I +++G + YG + N D + R+++D++R +
Sbjct: 230 RIVAVMQGKGSNYDSDVFQPLFDKITEITGVR-YGASLDAPN----DIAMRVIADHARTL 284
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDVYPEI 367
T AL+D P + + R V +L + G ++ +L +A +G+V+PE+
Sbjct: 285 TFALSDGAMP--SNEGRGYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPEL 342
Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
+ I+ + E E F + + G+ L + + K
Sbjct: 343 VQRQEAVSAII------------------------KAEEESFIVTLDRGIDLFSELVEKL 378
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 487
A + + I+G AF LYDTYG ++ + +AA + + E FE + E K R+++
Sbjct: 379 RASNGKV--IAGSDAFRLYDTYGFPFDLTRLMAADEGFEVDGEGFEHCMQEQKNRARS-- 434
Query: 488 ASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHA 547
D + + V DD K+ + D + ++
Sbjct: 435 -------DRREKQR--VDDDGAKWQWFSDVRASQFV-----------------------G 462
Query: 548 IRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGE 607
H A+I I+ + N + L+ D T YA +GGQ D G +L N+ ++ + +
Sbjct: 463 YDHLVHSATITGIR-QGNGKLLLVLDATPFYAESGGQTGDNG--WLENSRY---RLHVAD 516
Query: 608 LASLEGKIVH-----FGNVVSSFKVTPGLTSRVE--------VDARMRLGCMRAHTTSHL 654
IVH F V S V P VE V R R HT +HL
Sbjct: 517 TVKDGDAIVHVVSDAFDKVQDS-AVQPEDVEIVEQELAVAASVHRTARQDAERNHTATHL 575
Query: 655 LNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDR 713
++AALRR+L QK V + DFS + + L+ + + AVE +N I
Sbjct: 576 MHAALRRILGEHVQQKGSFVSPERLRFDFSHFSK-LTDEEIEAVEIAVNTQI-------- 626
Query: 714 RHMRASELPFLTHLTVI------------PGEIYPDDVILIDISDKENVISREPCCGTHV 761
R +E P + H V+ G+ Y D V +++I +S E C GTHV
Sbjct: 627 ---REAE-PVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIPG----MSVELCGGTHV 678
Query: 762 FNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSK 794
N G I +I S GVR I+ +TG +++
Sbjct: 679 DNIGRIGLFKIISEASVASGVRRIEAVTGKAAE 711
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
IP D ++ F N+GM QFK+VFL PY R A++QKCIR GKHNDL GRD+YHHT
Sbjct: 28 IPADDPTLLFTNAGMNQFKDVFLDKGSRPYVRAADTQKCIRASGKHNDLEDVGRDTYHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGNWSF DYYK +A A E T LP +RLY T
Sbjct: 88 FFEMLGNWSFGDYYKLEAITWAWELFT-VVWKLPKERLYAT 127
>sp|Q23122|SYAM_CAEEL Alanine--tRNA ligase, mitochondrial OS=Caenorhabditis elegans
GN=aars-1 PE=1 SV=2
Length = 793
Score = 357 bits (915), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 257/791 (32%), Positives = 394/791 (49%), Gaps = 84/791 (10%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVP-YGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANS 75
+R SF ++F ++ H +++SS ++P D ++ F N+GM QFK + L T + RVAN
Sbjct: 27 LRKSFYEFF-KSKNHEILRSSSVIPDENDGTLLFTNAGMNQFKPLILSSTESR--RVANI 83
Query: 76 QKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYY-KRDACRMALEFLTKPPVSLPL 134
QKC+R GGKHNDL G+D +H TFFEM+GNWSFND + K +ACR A E+L + + +
Sbjct: 84 QKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACRYAWEYLVEI-LGINA 142
Query: 135 DRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEI 194
DRLY +YFGG ++ GLP D E R+IW +GV + I + NFWEMG+ GPCG +EI
Sbjct: 143 DRLYVSYFGGIEKLGLPEDRECREIWKRIGVSSNRILP-FVAENFWEMGAAGPCGPCTEI 201
Query: 195 HYD-MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLV 253
HYD + G +S L VN D + ++EIWNIVF+S R S I L KN+IDTG+GFERL+
Sbjct: 202 HYDRIGGRDASRL--VNID-DSVVEIWNIVFMSSVRDSCGQIRHLGKNHIDTGMGFERLL 258
Query: 254 TILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVA 313
+++QNKTS +DTD+F P+LE +++ + +T S + D ++R+++D+ R TVA
Sbjct: 259 SVVQNKTSNFDTDVFTPILEKTSELAK-----KQYTGSLDSRQDATFRLVADHIRAATVA 313
Query: 314 LADNMFPDATA---KLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDS 370
++D PD T +R ++R A L +++ + EL +A + +VYPEI D+
Sbjct: 314 ISDGAVPDGTGCGFIVRKMMRRAFLQGISKLGIERYAM-SELVPVVASTMKEVYPEIHDT 372
Query: 371 INKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLAR 430
I+ I +E F WK + K K + +A
Sbjct: 373 STHIRKIFNDEEAQF----------WKTVDKA-------------------KKMFDSVAA 403
Query: 431 DPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASN 490
+ ISG AF L++T+GL + ELA + FE+ E ++ S+ +
Sbjct: 404 ESKSPIISGRKAFNLFETHGLPLAVTVELARNIGREVDETEFERCRLEAQKVSQKASQFK 463
Query: 491 VPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRH 550
+P + FP DK KY Y + + +Y FP + T ++ + Q
Sbjct: 464 LP----ISADDFPSHSDKEKYSYVF--RNGKYEFPQVKTRILQVYKDQQ----------- 506
Query: 551 ARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELAS 610
+ LE N L+ ++ Y GGQ D G +L +E +VE + +
Sbjct: 507 -------KAESLEANDRGFLVLEECQFYGEQGGQTSDTG--HLLIDGREVFEVENAKKIA 557
Query: 611 LEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKS 670
V FG + + L ++D R G MRAH+ +HLLN AL+++ + QK
Sbjct: 558 GGAVTVLFGRAL--LPIRRDLRVEQKLDETRREGVMRAHSATHLLNWALQKLGVGSGQKG 615
Query: 671 CRVFSDECALDFSVYGETLSVDS----VAAVEKYINDVIANQVQVDRRHMRASELPFLTH 726
V D D+S E LS + + E + + I N + E + +
Sbjct: 616 SSVDCDRFRFDYSTGDEDLSKEQRTELLIKCEMKMREFIQNGGFTEIIETSLEEAKKIEN 675
Query: 727 LT--VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRS 784
L V I V ++ + +V E C GTH+ + I+ ++ KS +R
Sbjct: 676 LQSDVKEDRIGGASVRVVALGSGADV-PVECCSGTHIHDVRVIDDVAIMSDKSMGQRLRR 734
Query: 785 IKCLTGDSSKA 795
I LTG + A
Sbjct: 735 IIVLTGKEAAA 745
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F N+GM QFK + L T + RVAN QKCIR GGKHNDL G+D +H TFFEM
Sbjct: 54 DGTLLFTNAGMNQFKPLILSSTESR--RVANIQKCIRAGGKHNDLDDVGKDLHHQTFFEM 111
Query: 882 LGNWSFNDYY-KRDACRMALEFLTKPPVSLPLDRLYFTF 919
+GNWSFND + K +ACR A E+L + + + DRLY ++
Sbjct: 112 MGNWSFNDAFSKEEACRYAWEYLVE-ILGINADRLYVSY 149
>sp|A5FIP9|SYA_FLAJ1 Alanine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=alaS PE=3 SV=1
Length = 879
Score = 356 bits (913), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 260/818 (31%), Positives = 386/818 (47%), Gaps = 111/818 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S+ +R FLD+F ++GHT+V S+PIV D ++ F NSGM QFK FLG PR
Sbjct: 1 MKSQDVRKQFLDFF-ESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+A++QKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E LT+
Sbjct: 60 IADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTE-VYK 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
+P + LY + F GS + +P D+E DIW L + D I K NFWEMG GPCG
Sbjct: 119 IPKENLYVSVFEGSKEDNVPFDQEAWDIWKTL-IDEDRIILGNKKDNFWEMGDQGPCGPC 177
Query: 192 SEIHYDMKGEPSSALAR----VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247
SEIH D++ AL VN D ++EIWN VF+ R + ++ L ++DTG+
Sbjct: 178 SEIHVDLRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGM 237
Query: 248 GFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFT--TSNRTDLDTSYRMLSD 305
GFERL LQ KTS YDTD+F+PL+ IE ++GAK T + + ++ + R+++D
Sbjct: 238 GFERLCMALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVAD 297
Query: 306 YSRMITVALADNMFPDATAK--LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDV 363
+ R + A+AD P T + + + F + + +L ++E +GD
Sbjct: 298 HVRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDS 357
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PEI+ ++ EE F +KT L+Q GL+L
Sbjct: 358 FPEIRTQKALCSNVIREEENSF--------------LKT---LDQ-------GLIL---- 389
Query: 424 LTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERS 483
L + + T I G AF LYDTYG ++ + + + L L E F+++L KERS
Sbjct: 390 LDAVILNNTGDT-IDGKKAFELYDTYGFPIDLTALILSERGLKLDEEGFQEQLQLQKERS 448
Query: 484 KAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCI 543
+A + D +++ V DD ++ YD S+ QV
Sbjct: 449 RAASKVTAGDWNVI------VEDDIQEF-VGYDRLSQ------------------QVKIT 483
Query: 544 DKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG--------VAYLTN 595
+ + G L+F+ T Y +GGQ D G + Y+ +
Sbjct: 484 KYRRVESVKDGEIFQ-----------LVFNATPFYGESGGQTGDKGYLEAQNGDIVYIID 532
Query: 596 TTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLL 655
T +EN + I SL I N V VDA R H+ +HLL
Sbjct: 533 TKKENNQT-IHLTQSLPENITGTFNAV--------------VDANQRAKTSSNHSATHLL 577
Query: 656 NAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRR 714
+ LR++L T QK V + DFS + + ++ + + VE ++N I + + +
Sbjct: 578 HQGLRKILGTHIEQKGSMVRNASLRFDFSHFSK-VTDEELLEVENFVNARIRESLPLIEK 636
Query: 715 HMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIG 774
E + GE Y D V I D S E C GTHV NT I ++
Sbjct: 637 RAIPKEQALEDGAIALFGEKYGDLVRTIKFGD-----SVELCGGTHVANTSDIWHFKIVS 691
Query: 775 YKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQI 812
+ G+R I+ +T +++K E S A S ++I
Sbjct: 692 EGAVAAGIRRIEAITSEAAKEYFE-----SQAVSLAEI 724
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F NSGM QFK FLG PR+A++QKC+RV GKHNDL G D+YHHT FEM
Sbjct: 32 DPTLMFNNSGMAQFKEFFLGNGTPKSPRIADTQKCLRVSGKHNDLEEVGIDTYHHTMFEM 91
Query: 882 LGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
LGNWSF DY+K++A A E LT+ +P + LY +
Sbjct: 92 LGNWSFGDYFKKEAINWAWELLTE-VYKIPKENLYVS 127
>sp|Q3B1I7|SYA_PELLD Alanine--tRNA ligase OS=Pelodictyon luteolum (strain DSM 273)
GN=alaS PE=3 SV=1
Length = 887
Score = 353 bits (906), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 254/799 (31%), Positives = 389/799 (48%), Gaps = 105/799 (13%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ S+ IR SFLD+F + HT+V+S+P++P D ++ F N+GM QFK+VFL PY R
Sbjct: 1 MHSREIRQSFLDFFA-AKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A++QKC+R GKHNDL GRD+YHHTFFEMLGNWSF DYYK +A A E LT+
Sbjct: 60 AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTE-VWK 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP DRLY T + D+E+ IW E + HI + G K NFWEMG TGPCG
Sbjct: 119 LPADRLYATVYHD--------DDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGP 170
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SEIH D+ + S VNA + IE+WN+VFI + R + PL + ++DTG+GFE
Sbjct: 171 CSEIHIDLTPD-GSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFE 229
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++Q+K S YDTD+FLPL + + +++G T+ S D + R+++D++R +
Sbjct: 230 RVCAVMQSKASNYDTDVFLPLFQRLSELTGV-----TYGASMDGRQDIAMRVIADHARTL 284
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVK---QGKLVKELSYNIAEILGDVYPEI 367
T AL+D P + + R V +L + G ++ +L +A+ +GDV+ E+
Sbjct: 285 TFALSDGAMP--SNEGRGYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGEL 342
Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
+D + ++ I+ E F + +E F + G + L
Sbjct: 343 RDRRDAVERIIRAEEESF-------------ITTLDRGMEIFGELAAATARAGGRML--- 386
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 487
G+ AF LYDTYG ++ + LA L + E FE + E K R+++
Sbjct: 387 ----------KGEDAFKLYDTYGFPFDLTRLLATEAGLDVDGEGFEHCMQEQKSRARS-- 434
Query: 488 ASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDT-NLVGIVIGDQVFCIDKH 546
D + T D + + ++S TF D + +IG H
Sbjct: 435 ----------DRREKQQTGDGAG-SWQWFSDSHATTFLGYDRLAMPSTIIG------AAH 477
Query: 547 AIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG----VAYLTNT--TQEN 600
A H + L+ +T YA +GGQ D G AY T+++
Sbjct: 478 ASGH-----------------LLLVLAETPFYAESGGQTGDRGWLESAAYRMQVTDTRKD 520
Query: 601 GKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALR 660
G + ++ K+ + V+ +R R HT +HLL+AALR
Sbjct: 521 GDSFVHVVSRAFDKVRDTEIDPMDIVIEEATPVDASVERILRQETERNHTATHLLHAALR 580
Query: 661 RVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRAS 719
R+L + QK V S+ DFS + + ++ + + AVE +N+ I V + +
Sbjct: 581 RILGSHVQQKGSFVTSERLRFDFSHFSK-MTPEEIQAVEAEVNEHIRCAAHVSKH----A 635
Query: 720 ELPFLTHLT----VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGY 775
+LP+ + G+ Y + V ++++ IS E C GTHV N G I +I
Sbjct: 636 DLPYDEAIAKGALAFFGDKYAERVRMVEVPG----ISAELCGGTHVDNIGQIGIFKIISE 691
Query: 776 KSYNHGVRSIKCLTGDSSK 794
S G+R I+ LTG +++
Sbjct: 692 SSAAAGIRRIEALTGRAAE 710
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 805 TAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHN 864
A S + + + IP D ++ F N+GM QFK+VFL PY R A++QKCIR GKHN
Sbjct: 15 AAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRAADTQKCIRASGKHN 74
Query: 865 DLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
DL GRD+YHHTFFEMLGNWSF DYYK +A A E LT+ LP DRLY T
Sbjct: 75 DLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTE-VWKLPADRLYAT 127
>sp|A6L1L8|SYA_BACV8 Alanine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=alaS PE=3 SV=1
Length = 871
Score = 353 bits (905), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 259/795 (32%), Positives = 381/795 (47%), Gaps = 113/795 (14%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ +K IR SF +F ++GH +V S+P+V D ++ F N+GM QFK++ LG PA Y R
Sbjct: 1 MTAKEIRDSFKSFF-ESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
VA+SQKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E+L
Sbjct: 60 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
P D LY T F GS + GL D E W + +P+DHI NFWEMG TGPCG
Sbjct: 120 DPKD-LYATVFEGSPEEGLERDNEAASYWEQF-LPKDHILNGNKHDNFWEMGDTGPCGPC 177
Query: 192 SEIHYDMKGEPSSAL----ARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247
SEIH D + E A VN D +IEIWN+VF+ R + ++ L IDTG+
Sbjct: 178 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 237
Query: 248 GFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYS 307
GFERLV LQ KTS YDTD+F P+L+ I +++G T+ N+ D+ + R+++D+
Sbjct: 238 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGT-----TYGQDNQKDI--AMRVIADHI 290
Query: 308 RMITVALADNMFPD---ATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVY 364
R I ++ D P A +R ++R A+ KQ + K L I E +G+ Y
Sbjct: 291 RTIAFSITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLI-ENMGEAY 349
Query: 365 PEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYL 424
PE+ K L++ + E+ + + L G++ L
Sbjct: 350 PELNAQ--------------------------KTLIEKVIKEEEESFLRT--LETGIRLL 381
Query: 425 TKQL--ARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKER 482
K + A+ EISG AFTLYDT+G ++ + + +T+ E F ++ + KER
Sbjct: 382 DKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELILRENGMTVNEEEFNAEMQKQKER 441
Query: 483 SKAKAASNVPDIDLMDLK----HFPVTDDKYKYDY-HYDTNSKRYTFPCLDTNLVGIVIG 537
++ AA V D + +K HF YD+ Y+T+ RY
Sbjct: 442 ARNAAA--VETGDWITIKEGDTHF------VGYDFTEYETSILRYR-------------- 479
Query: 538 DQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTT 597
I+ ++ ++ T YA +GGQ+ D GV
Sbjct: 480 ---------------------QIKQKNQTLYQIVLSDTPFYAESGGQVGDTGV-----IV 513
Query: 598 QENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNA 657
E +EI + +H + P + VD R C H+ +HLL+
Sbjct: 514 SEFETIEIIDTKKENNLPIHITKKLPEHLDVPMMAC---VDTEKRAACAANHSCTHLLDE 570
Query: 658 ALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQV-DRRH 715
ALR+VL T QK V + DFS + + ++ + + VE +N I + + + R+
Sbjct: 571 ALRQVLGTHVEQKGSLVTPESLRFDFSHF-QKVTDEQLREVEHLVNAKIRENIPLTEYRN 629
Query: 716 MRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGY 775
+ + L + + GE Y D+V ++ + S E C GTHV TG I +I
Sbjct: 630 LPIEKAKELGAIALF-GEKYGDEVRVVQFGN-----SIEFCGGTHVPATGKIGMVRIISE 683
Query: 776 KSYNHGVRSIKCLTG 790
S GVR I+ +TG
Sbjct: 684 SSVAAGVRRIEAITG 698
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 62/82 (75%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F N+GM QFK++ LG PA Y RVA+SQKC+RV GKHNDL G D+YHHT FEM
Sbjct: 32 DPTLMFTNAGMNQFKDIILGNHPAKYKRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEM 91
Query: 882 LGNWSFNDYYKRDACRMALEFL 903
LGNWSF DY+K++A A E+L
Sbjct: 92 LGNWSFGDYFKKEAIGWAWEYL 113
>sp|Q7MV54|SYA_PORGI Alanine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=alaS PE=3 SV=1
Length = 876
Score = 352 bits (902), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 251/798 (31%), Positives = 386/798 (48%), Gaps = 118/798 (14%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L SK IR SF +F ++GH +V S+P+V GD ++ F N+GM QFK++ LG T A Y R
Sbjct: 2 LTSKEIRESFKTFFA-SKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
VA+SQKC+RV GKHNDL G D+YHHT FEMLGNWSF DY+K++A A E+L +
Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLV-TVLG 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
L RLY T F G+ + GL D E W + +P + I NFWEMG TGPCG
Sbjct: 120 LDPQRLYATVFEGNPEEGLDRDNEAASYWAQF-LPEERIINGNKHDNFWEMGDTGPCGPC 178
Query: 192 SEIHYDMKGEPSSA----LARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247
SEIH D++ + A L +N +IEIWN+VF+ + R + ++ PL IDTG+
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238
Query: 248 GFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYS 307
GFERL LQ KTS YDTD+F PL+ T+ ++G YG T+ D + R+++D+
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGI-GYGEDSTS------DIAMRVVADHI 291
Query: 308 RMITVALADNMFPD---ATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVY 364
R I A+ D P A +R ++R A+ ++ + + L + + +GD Y
Sbjct: 292 RTIAFAITDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLP-TLIDTMGDAY 350
Query: 365 PEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYL 424
PE+Q I ++ EE F LR L G++ L
Sbjct: 351 PELQAQRELISRVIKEEEESF--LRT--------------------------LETGIRLL 382
Query: 425 TKQLARDPSI--TEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKER 482
K++A + + T + G AF LYDT+G ++ + + +T+ F+ ++ + KER
Sbjct: 383 EKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTALILSENGMTVDESGFDTEMQKQKER 442
Query: 483 SKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFC 542
++ AA D ++ ++ Y F +T +
Sbjct: 443 ARNAAAVEAGDWVVL---------------REGESKFSGYDFTETETEI----------- 476
Query: 543 IDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQ-------IDDIGVAY-LT 594
+R+ + ++ ++ + ++ T YA GGQ ID+ GVAY +
Sbjct: 477 -----LRYRQ-------VKQKNKEYFQVVLSDTPFYAEMGGQVGDSGQLIDESGVAYDIF 524
Query: 595 NTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHL 654
+T +EN VH + T +R+ D R + HT +HL
Sbjct: 525 DTKRENNLS------------VHLMKKLPE-STTDTFVARINQDKRRQAEA--NHTATHL 569
Query: 655 LNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDR 713
L+ ALR VL T QK V + DFS +G+ +S + + VE+ +++ I Q +
Sbjct: 570 LHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGK-MSPEEIRKVEELVSERIRADFQREE 628
Query: 714 -RHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTV 772
R + +E + + + GE Y ++V ++ S E C GTH+ +TG I + +
Sbjct: 629 FRDVPIAEAQAMGAMALF-GEKYGEEVRVLKYGS-----SVELCGGTHIPSTGMIGAFRI 682
Query: 773 IGYKSYNHGVRSIKCLTG 790
+ S GVR I+ +TG
Sbjct: 683 VTESSIASGVRRIEAVTG 700
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 821 GDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFE 880
GD ++ F N+GM QFK++ LG T A Y RVA+SQKC+RV GKHNDL G D+YHHT FE
Sbjct: 32 GDPTLMFTNAGMNQFKDIILGNTEAKYTRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFE 91
Query: 881 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
MLGNWSF DY+K++A A E+L + L RLY T
Sbjct: 92 MLGNWSFGDYFKKEAIEWAWEYLV-TVLGLDPQRLYAT 128
>sp|Q65VQ5|SYA_MANSM Alanine--tRNA ligase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=alaS PE=3 SV=1
Length = 875
Score = 349 bits (896), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 257/805 (31%), Positives = 390/805 (48%), Gaps = 128/805 (15%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR S+LD+F +++GH +V+SS +VP+ D ++ F N+GM QFK+VFLG+ PY R
Sbjct: 3 TTAQIRQSYLDFF-HSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTRA 61
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
+Q+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA EFLT P +
Sbjct: 62 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWLG 121
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP ++LY T + D+E DIW E+GVP DHI + G NFW MG
Sbjct: 122 LPKEKLYVTVY--------ETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMG 173
Query: 184 STGPCGYSSEIHYDMKGEPSSALARV-NADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242
TGPCG +EI YD L D + IEIWNIVF+ R + T+ L K
Sbjct: 174 DTGPCGPCTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPS 233
Query: 243 IDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-DTSYR 301
+DTG+G ER+ +LQ+ S YD D+F L++ + +++G K DL + S R
Sbjct: 234 VDTGMGLERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEK------------DLTNKSLR 281
Query: 302 MLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KELSYN 355
+++D+ R +AD + P + LR ++R A V+ G L+ + Y
Sbjct: 282 VIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRA---------VRHGHLLGAKETFFYK 332
Query: 356 IAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEP 415
+ L DV + +N+ ++A +++ + E EQF E
Sbjct: 333 LVPTLADVMEHAGEIVNQ---------------KRALIEK-----TLKAEEEQFARTLER 372
Query: 416 GLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQK 475
GL+L L++ +D +SGD+AF LYDTYG ++ ++ + +T+ + FE++
Sbjct: 373 GLLLLDDALSQ--VKD---NVLSGDVAFKLYDTYGFPLDLTADVCRERNITIDEKGFERE 427
Query: 476 LNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIV 535
+ +R++A+A+SN +D + D + ++ K Y L + V +
Sbjct: 428 MQ--AQRARAQASSNFG----VDYNNVIKVDGQTEF--------KGYETTSLSSAKVVAL 473
Query: 536 IGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIG------ 589
D G S++ +Q NA V I D+T Y +GGQI D G
Sbjct: 474 FTD---------------GKSVERVQSGENAVV--ILDRTPFYGESGGQIGDTGYIATDL 516
Query: 590 VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAH 649
A+ N TQ+ G+V G + LE + G+ VS+ +VD RL H
Sbjct: 517 AAFRINDTQKYGQV-TGHIGQLESGSLSVGDTVSA-----------QVDTERRLAVAANH 564
Query: 650 TTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
+ +HLL+AALR+VL QK V DF + E +S + + +E +N I
Sbjct: 565 SATHLLHAALRKVLGDHVAQKGSLVSESALRFDF-IQPEAISKEQIIEIEAIVNRQIREN 623
Query: 709 VQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIE 768
+ V M E + GE Y D V ++ ++ S E C GTHV TG I
Sbjct: 624 ISVTTEVMDI-EAAKQKGAMALFGEKYGDLVRVVGMTG----FSIELCGGTHVKRTGDIG 678
Query: 769 SCTVIGYKSYNHGVRSIKCLTGDSS 793
V+ + G+R I+ +T +++
Sbjct: 679 LFKVVSESAIAAGIRRIEAVTAENA 703
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLG+ PY R +Q+C+R GGKHNDL G + HHT
Sbjct: 29 VPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTRATTAQRCVRAGGKHNDLENVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA EFLT P + LP ++LY T
Sbjct: 89 FFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWLGLPKEKLYVT 130
>sp|B2V709|SYA_SULSY Alanine--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=alaS PE=3 SV=1
Length = 876
Score = 346 bits (887), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 259/798 (32%), Positives = 386/798 (48%), Gaps = 100/798 (12%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR SFL YF ++GHT+VKS+ I+P D ++ FVN+GM FKNVFLGL PY R
Sbjct: 4 MTADEIRQSFLKYF-ESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKR 62
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
A+ QK RV GKHNDL G HHTFFEMLGN+SF DY+K++A A E+LT+ +
Sbjct: 63 AASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTE-HLE 121
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
+P ++L + F D+E +IW +G+ IK+ G K NFW MG TGPCG
Sbjct: 122 IPKEKLLVSVF--------EEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGP 173
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+YD +GE D +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 174 SSEIYYD-RGEKFGNPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLE 232
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ ++LQ S YDTDLF P+++ E+VSG K YG+ N D D + R+++D+ R I
Sbjct: 233 RIASVLQGVDSNYDTDLFKPIIQFAEEVSG-KEYGK-----NEKD-DIAMRVIADHLRAI 285
Query: 311 TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYN----IAEILGDVYPE 366
T ++D + P R V ++ + G + K Y + E + YPE
Sbjct: 286 TFLISDGVLPANEG--RGYVLRRIIRRALRYGKNLG-IEKPFLYEGVDVVIEKMKTAYPE 342
Query: 367 IQDSINKIQLIL-GEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLT 425
+ + + I+ I EE + L+++ + + Y
Sbjct: 343 LIQNRSFIKTITKSEEEKFIKTLKRS---------------------------MDILYQM 375
Query: 426 KQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKA 485
+ AR + ++G+ F LYDTYG ++++E+ + T F L E KER++
Sbjct: 376 IEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFTFDLIEFHNLLEEQKERARK 435
Query: 486 KAASNVPDID--LMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCI 543
S +I + LK+ + Y+ NSK ++ I+ GDQ+
Sbjct: 436 SWKSQSKEIKPVYLTLKNKLPENQFVGYETLTSENSK----------VLAIIKGDQL--- 482
Query: 544 DKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKV 603
+ A+ G I+ ++ D T Y GGQI D G+ E
Sbjct: 483 ----VDTAKEGEDIE-----------IVLDITPFYPEKGGQIGDRGIIEGDEFLFEV--- 524
Query: 604 EIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL 663
+ ++G IVH G V+ V G R + D R MR HT +HLL+AALR VL
Sbjct: 525 -LDTQTPVDGLIVHKGKVLFG-SVKEGAYVRAKTDKERRENIMRHHTATHLLHAALRNVL 582
Query: 664 TCTYQKSCRVFSDE-CALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELP 722
+++ + SDE DF+ + E+++ + + AVE+ +N I +V + M+ E
Sbjct: 583 GDHVKQAGSLVSDEYLRFDFTHF-ESMTDEELKAVEELVNREIMKNEEVVCQEMQYEE-A 640
Query: 723 FLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGV 782
+ I E Y D V +I IS+E C GTHV TG I ++ + + G
Sbjct: 641 LKSGAMAIFEEKYADVVRVISAG-----ISKELCGGTHVKRTGDIGYFKILSESAVSSGT 695
Query: 783 RSIKCLTGDSSKAAVENG 800
R I+ + G AVE G
Sbjct: 696 RRIEAVAGIK---AVEKG 710
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
IP D ++ FVN+GM FKNVFLGL PY R A+ QK RV GKHNDL G HHT
Sbjct: 31 IPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQKVFRVSGKHNDLENVGYTPRHHT 90
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRL 915
FFEMLGN+SF DY+K++A A E+LT+ + +P ++L
Sbjct: 91 FFEMLGNFSFGDYFKKEAIEFAWEYLTE-HLEIPKEKL 127
>sp|Q1GHA1|SYA_RUEST Alanine--tRNA ligase OS=Ruegeria sp. (strain TM1040) GN=alaS PE=3
SV=2
Length = 883
Score = 343 bits (880), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 250/813 (30%), Positives = 385/813 (47%), Gaps = 109/813 (13%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQ 76
IRS+FL+YF QGH +V SSP+VP D ++ F NSGM QFKN F G+ Y R +Q
Sbjct: 7 IRSTFLNYFAK-QGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVRATTAQ 65
Query: 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDR 136
KCVR GGKHNDL G + HHTFFEMLGN+SF DY+K +A A E +T +P D+
Sbjct: 66 KCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITG-EFDIPKDK 124
Query: 137 LYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY 196
LY T + D+E +IW ++GVP + I + NFW+MG TGPCG +EI Y
Sbjct: 125 LYTTVY--------HTDDEAFEIWKKVGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFY 176
Query: 197 D-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER 251
D G P S D + IEIWN+VF+ ++R + ++V L IDTG+G ER
Sbjct: 177 DHGDHIWGGPPGSP----EEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLER 232
Query: 252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMIT 311
+ +LQ Y+TDLF L+E V+ ++PYG D + +R+++D+ R +
Sbjct: 233 IAALLQGTHDNYETDLFKYLIEASATVTKSEPYG---------DQNVHHRVIADHLRSCS 283
Query: 312 VALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 368
+A+ + P + LR ++R A+ + + ++ +L + +G YPE+
Sbjct: 284 FLIAEGVLPSNEGRGYVLRRIMRRAMRHASLLGATD--PVMHKLVPALVSQMGAAYPELG 341
Query: 369 DSINKIQLIL-GEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
I+ EE+R L + K L +LE+ +++
Sbjct: 342 QGQALIEETFEQEETRFLKTLDRG----LKLLDDASGDLEKGDVL--------------- 382
Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKA 487
G+ AF LYDT+G ++ Q+ AK + + + F+ + KE+S+A
Sbjct: 383 ----------PGETAFKLYDTFGFPLDLTQDALRAKGIEVDTDGFDAAMKAQKEQSRAGG 432
Query: 488 ASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHA 547
I L D T+ K Y F +D +G + +
Sbjct: 433 ------IGLGDA-----------------TDVKVY-FDIVDAEGTTEFLGYETEKAEGQI 468
Query: 548 IRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGE 607
+ + GA +DS + + V +I ++T Y +GGQ+ D G+ T E G I +
Sbjct: 469 VALVKDGARVDSAKAGES--VQIILNQTPFYGESGGQVGDSGM-----LTVEGGAARITD 521
Query: 608 LASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT-CT 666
+EG +H V ++ G + +EVD R H+ +HLL+ ALR L
Sbjct: 522 TKKVEGLFLHIAEVTEG-EIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRNALGDHV 580
Query: 667 YQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTH 726
QK +D DFS + + +S + ++ + +ND I V R M + L
Sbjct: 581 AQKGSLNAADRLRFDFS-HNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDARALGA 639
Query: 727 LTVIPGEIYPDDVILIDI--------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSY 778
+ GE Y ++V ++ + +D E S E C GTHV TG I + ++G +
Sbjct: 640 QALF-GEKYGEEVRVVSMGRAPTGKGADGE-TYSIELCGGTHVKQTGDIGTFVILGDSAS 697
Query: 779 NHGVRSIKCLTGDSSKAAVEN--GKHLSTAASF 809
+ GVR I+ LTG ++ A +E G+ AAS
Sbjct: 698 SAGVRRIEALTGAAAFAHLEREAGRMAEVAASL 730
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F NSGM QFKN F G+ Y R +QKC+R GGKHNDL G + HHT
Sbjct: 29 VPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVRATTAQKCVRAGGKHNDLDNVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K +A A E +T +P D+LY T
Sbjct: 89 FFEMLGNFSFGDYFKNEAIPFAWELITG-EFDIPKDKLYTT 128
>sp|A9MFZ1|SYA_SALAR Alanine--tRNA ligase OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=alaS PE=3 SV=2
Length = 876
Score = 339 bits (869), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 257/819 (31%), Positives = 388/819 (47%), Gaps = 149/819 (18%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S Y+ DLF L+E + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLV 349
S R+++D+ R +AD + P + LR ++R A +L +++ F K
Sbjct: 279 KSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYK----- 333
Query: 350 KELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQF 409
L + E++G E++ +++ +L + E EQF
Sbjct: 334 --LVGPLIEVMGSAGEELKRQQAQVEQVL------------------------KTEEEQF 367
Query: 410 NIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCH 469
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 368 ARTLERGLAL----LDEELAKLQGDT-LDGETAFRLYDTYGFPVDLTADVCRERDIKVDE 422
Query: 470 EAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFP 525
FE + E +R +A+ AS + DY+ D+ S+ +
Sbjct: 423 AGFETAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYD 462
Query: 526 CLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQI 585
L+ N G V +F +G ++++I A V + D+T YA +GGQ+
Sbjct: 463 HLELN--GKVTA--LFV----------NGKAVEAINAGQEAVV--VLDQTPFYAESGGQV 506
Query: 586 DD------IGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDA 639
D +G + N TQ+ G+ IG L L + G+VV + +VD
Sbjct: 507 GDKGELKGVGFTFAVNDTQKYGQA-IGHLGKLSAGALKVGDVVQA-----------DVDE 554
Query: 640 RMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDEC-ALDFSVYGETLSVDSVAAVE 698
R H+ +HL++AALR+VL + + SD+ DFS + E + + VE
Sbjct: 555 ARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDFS-HNEAMKPSEIREVE 613
Query: 699 KYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCG 758
+N I + ++ H+ E + GE Y + V ++ + D S E C G
Sbjct: 614 DLVNAQIRRNLPIE-THIMELEAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGG 668
Query: 759 THVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TH TG I +I GVR I+ +TG+ + A V
Sbjct: 669 THARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATV 707
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVT 131
>sp|A9WCR2|SYA_CHLAA Alanine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=alaS PE=3 SV=1
Length = 894
Score = 338 bits (868), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 254/810 (31%), Positives = 386/810 (47%), Gaps = 107/810 (13%)
Query: 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP 70
+L + IR +FL +F GHT V SS +V D ++ F NSGM QFK+VFLG PY
Sbjct: 3 KLTAAQIRETFLSFFIR-HGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYS 61
Query: 71 RVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPV 130
R +QKC+RV GKHNDL G HHTFFEMLGN+SF DY+K +A +A + LT+
Sbjct: 62 RAVTAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEE-F 120
Query: 131 SLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP++RL+FT F G D+ +P D+E +W+ G + + G K NFW MG TGPCG
Sbjct: 121 KLPVERLWFTVFAGDDE--VPPDDEAAALWIAQGADPSRVLRFGRKDNFWVMGDTGPCGP 178
Query: 191 SSEIHYDMKGEPSSALAR-VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249
SEI + + S A VN+D + +EIWN VF+ + R T+ PL + +DTG+G
Sbjct: 179 CSEITMYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGL 235
Query: 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
ER+ ++Q STY+TDLF+ ++ I K G+ ++R+ +YR ++D++R
Sbjct: 236 ERMAMVMQGVHSTYETDLFVAIINQIIKTRGSD---EEHYHAHRS----AYRAIADHARA 288
Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 366
I +AD + P + LR ++R A + + + ++ ++ E +G+ YPE
Sbjct: 289 IAFLIADGVLPGNLGRSYVLRRILRRAAYQGRTIGFER--PFLADVITSVIEQMGEAYPE 346
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK 426
+ + + +LIL AA +E + ++T + G++ V+ +
Sbjct: 347 L---VKRRELIL-----------SAADQEERQFLRTL----SGGLTRLQGVIEQVRARGE 388
Query: 427 QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNE-------L 479
Q+ I G+ AF L DTYG ++ Q++AA + LT+ +E + E
Sbjct: 389 QV--------IPGNDAFVLKDTYGFPLDLTQKIAAEQGLTVDEAGYEAAMAEQRARSRAA 440
Query: 480 KERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQ 539
+ A D+DL HF Y+ S R T VIG
Sbjct: 441 AASKRGGEADLWADLDL-PASHFT----------GYERLSDRAT-----------VIG-- 476
Query: 540 VFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQE 599
D A+ A +G S+ ++ D T YA +GGQI D G+
Sbjct: 477 -MLGDGDALTSADTGRSVQ-----------IVLDTTPFYAESGGQIGDTGL-----LVGP 519
Query: 600 NGKVEIGELAS-LEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAA 658
G V+I + L G IVH+G VV+ +++ G + VD R R HT +H+L A
Sbjct: 520 EGSVQIEDTRRPLPGLIVHYGRVVNG-RISVGDQVQATVDVVRRADIQRNHTATHMLQRA 578
Query: 659 LRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMR 717
LR VL Q V D DF+ + + + + + VE+ +N + V R +
Sbjct: 579 LRDVLGEHAAQAGSLVAPDRLRFDFT-HTKAVDPEELREVEQRLNKWVRADTTV-RWEIT 636
Query: 718 ASELPFLTHLTVIPGEIYPDDVILIDISDKENVI--------SREPCCGTHVFNTGHIES 769
+ + GE Y D V L+ I + + S E C GTHV +TG I
Sbjct: 637 GYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGEIGF 696
Query: 770 CTVIGYKSYNHGVRSIKCLTGDSSKAAVEN 799
++ S G+R I+ LTG ++ VE
Sbjct: 697 VRIVSEGSIGSGIRRIEALTGRGAEGWVEQ 726
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEM 881
D ++ F NSGM QFK+VFLG PY R +QKC+RV GKHNDL G HHTFFEM
Sbjct: 35 DPTLLFANSGMVQFKDVFLGREQRPYSRAVTAQKCLRVSGKHNDLEEVGPSPRHHTFFEM 94
Query: 882 LGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
LGN+SF DY+K +A +A + LT+ LP++RL+FT
Sbjct: 95 LGNFSFGDYFKAEAIALAWKLLTE-EFKLPVERLWFT 130
>sp|Q13W97|SYA_BURXL Alanine--tRNA ligase OS=Burkholderia xenovorans (strain LB400)
GN=alaS PE=3 SV=1
Length = 874
Score = 338 bits (868), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 253/809 (31%), Positives = 389/809 (48%), Gaps = 134/809 (16%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR FL +F ++GHT+V+SS +VP D ++ F NSGM QFK+VFLG PY R
Sbjct: 1 MKAAEIREKFLKFF-ESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+Q+ VR GGKHNDL G + HHTFFEMLGN+SF DY+KRDA A E LT
Sbjct: 60 ATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLT-GVYQ 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEG-------MKCNFWEMG 183
LP D+L+ T + D+E DIW E+GVP + I + G NFW+M
Sbjct: 119 LPKDKLWVTVY--------HEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMA 170
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG SEI YD G P S D + IEIWN+VF+ R + + PL
Sbjct: 171 DTGPCGPCSEIFYDHGPDVWGGPPGSP----EEDGDRYIEIWNLVFMQFNRDAQGNMTPL 226
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDT 298
K +DTG+G ER+ +LQ+ S Y+ DLF L++ + A+ G + T+N
Sbjct: 227 PKQCVDTGMGLERIAAVLQHVHSNYEIDLFQALIK-----AAARETGVSDLTNN------ 275
Query: 299 SYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKV-KQGKLVKELSY 354
S ++++D+ R + + D + P + LR +VR A+ +K+ K+G +
Sbjct: 276 SLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAI---RHGYKLGKKGSFFHRMVA 332
Query: 355 NIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEE 414
++ +G YPE++++ E R+ D LR Q E F +E
Sbjct: 333 DLVAQMGAAYPELKEA----------EQRVTDVLR-------------QEEERFFETIEH 369
Query: 415 PGLVLGVKYLTKQLAR--DPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF 472
G+ L LA S + G++AF L+DTYG ++ ++ +++T+ AF
Sbjct: 370 -----GMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVTVDEAAF 424
Query: 473 EQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLV 532
++ + ++R +A+AA K+K + + ++ TF
Sbjct: 425 DEAMT--RQREQARAAG------------------KFKMAQGLEYSGEKTTFHGY----- 459
Query: 533 GIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGV-- 590
D+V D I GAS+ A V + D T YA +GGQ+ D GV
Sbjct: 460 -----DEVVFDDAKVIALYVEGASVQQASQGQQAVV--VLDHTPFYAESGGQVGDQGVLA 512
Query: 591 -AYLTNTTQENGKVE---IGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 646
A + + KV+ +G +LE + G+VV + E+DA R
Sbjct: 513 NASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVV-----------KAEIDAVRRARTA 561
Query: 647 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIN-DV 704
R H+ +HL++ ALR VL T QK V +D+ DF+ + L+ + + VE+ +N +V
Sbjct: 562 RNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFA-HNAPLTDEQIRRVEEIVNAEV 620
Query: 705 IANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 764
+AN + R + + + + GE Y D+V ++D+ SRE C GTHV T
Sbjct: 621 LANAPGIVR--VMSFDEAVKGGAMALFGEKYGDEVRVLDLG-----FSRELCGGTHVHRT 673
Query: 765 GHIESCTVIGYKSYNHGVRSIKCLTGDSS 793
G I ++ G+R ++ +TGD++
Sbjct: 674 GDIGLFKIVMEGGVAAGIRRVEAITGDNA 702
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F NSGM QFK+VFLG PY R +Q+ +R GGKHNDL G + HHT
Sbjct: 28 VPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTAQRSVRAGGKHNDLENVGYTARHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+KRDA A E LT LP D+L+ T
Sbjct: 88 FFEMLGNFSFGDYFKRDAIHYAWELLT-GVYQLPKDKLWVT 127
>sp|A1VEQ6|SYA_DESVV Alanine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=alaS PE=3 SV=1
Length = 879
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 252/822 (30%), Positives = 397/822 (48%), Gaps = 146/822 (17%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR FL+++ GH V+SS +VP D S+ F N+GM QFK +FLG Y R
Sbjct: 2 ITANEIRRRFLEFY-KAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
SQKC+RVGGKHNDL GR + HHTFFEMLGN+SF DY+K DA + A +FLT+ +
Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEE-LK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELG-VPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T F D+E +WL+ +P + I + G K NFW MG TGPCG
Sbjct: 120 LPKERLYATVF--------RDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGP 171
Query: 191 SSEIHYDMKGE-----PSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDT 245
SEI D +GE P + + + DR +EIWN+VF+ + + + PL K IDT
Sbjct: 172 CSEILID-QGEHMTCGPDCGIGKCDCDR--FLEIWNLVFMQYDQDATGKREPLPKPSIDT 228
Query: 246 GLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTD--LDTSYRML 303
G+G ER+ + Q S +DTD+F +++ ++ S R+D DT+ R++
Sbjct: 229 GMGLERITAVCQGVFSNFDTDIFQAIIQYTCGLA---------NVSYRSDDETDTALRVI 279
Query: 304 SDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLVKELSYN 355
+D+SR I + D + P + LR ++R A L+ D F + + +
Sbjct: 280 ADHSRAIAFMITDGILPSNEGRGYVLRRLIRRAYRFGRLIGLTDTF-------LHKTALK 332
Query: 356 IAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEP 415
+ +I+GD YPE++++ + + ++ EE ++FN +
Sbjct: 333 VVDIMGDDYPELRENSDFMARVVREEE------------------------DRFNRTLDK 368
Query: 416 GLVLGVKYLTKQLA--RDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFE 473
GL + L +LA + GD+AF LYDT+G +I+ ++A + ++ + F+
Sbjct: 369 GLSM----LEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFSVDEDGFK 424
Query: 474 QKLNELKERSKAK-AASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLV 532
+ E KER+KA S DI + P+ ++ + ++ Y C + +V
Sbjct: 425 ALMKEQKERAKAAWKGSGEKDI---ASRFQPLLEEGMRSEF------IGYDHLCGEGRIV 475
Query: 533 GIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAY 592
+ +D+HA+ +++ + + L+ ++T Y +GGQ DIG
Sbjct: 476 AL--------MDEHAL-------AVERLAAGQKGY--LVTNRTPFYGASGGQSGDIGT-- 516
Query: 593 LTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGL----TSRVEVDARM------- 641
+AS GK+ VV + K +P L VE D +
Sbjct: 517 ---------------IASPSGKV----RVVDTIKPSPELVVHHVEAVEGDILLDQEVDLT 557
Query: 642 -----RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVA 695
R+ R HT +HLL+AALRRVL Q V D DF+ + ++ + +A
Sbjct: 558 VTEDDRVASARNHTCTHLLHAALRRVLGDHVKQAGSLVAPDRLRFDFT-HIAPMTPEELA 616
Query: 696 AVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP 755
AVE+ +N VI + ++ HM + + + GE Y D+V ++ I+D+ S E
Sbjct: 617 AVEREVNRVIMADIPLETDHMHYDDAVKRGAMALF-GEKYGDEVRVVAIADE----SVEL 671
Query: 756 CCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
C GTH+ TG ++ GVR I+ LTG ++ AV
Sbjct: 672 CGGTHLRATGQAGLFLIVSESGVAAGVRRIEALTGWNAMHAV 713
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D S+ F N+GM QFK +FLG Y R SQKC+RVGGKHNDL GR + HHT
Sbjct: 29 VPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSRATTSQKCLRVGGKHNDLENVGRTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A +FLT+ + LP +RLY T
Sbjct: 89 FFEMLGNFSFGDYFKEDAIKFAWKFLTE-ELKLPKERLYAT 128
>sp|P61700|SYA_DESVH Alanine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=alaS PE=3
SV=1
Length = 879
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 252/822 (30%), Positives = 397/822 (48%), Gaps = 146/822 (17%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR FL+++ GH V+SS +VP D S+ F N+GM QFK +FLG Y R
Sbjct: 2 ITANEIRRRFLEFY-KAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
SQKC+RVGGKHNDL GR + HHTFFEMLGN+SF DY+K DA + A +FLT+ +
Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEE-LK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELG-VPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP +RLY T F D+E +WL+ +P + I + G K NFW MG TGPCG
Sbjct: 120 LPKERLYATVF--------RDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGP 171
Query: 191 SSEIHYDMKGE-----PSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDT 245
SEI D +GE P + + + DR +EIWN+VF+ + + + PL K IDT
Sbjct: 172 CSEILID-QGEHMTCGPDCGIGKCDCDR--FLEIWNLVFMQYDQDATGKREPLPKPSIDT 228
Query: 246 GLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTD--LDTSYRML 303
G+G ER+ + Q S +DTD+F +++ ++ S R+D DT+ R++
Sbjct: 229 GMGLERITAVCQGVFSNFDTDIFQAIIQYTCGLA---------NVSYRSDDETDTALRVI 279
Query: 304 SDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLVKELSYN 355
+D+SR I + D + P + LR ++R A L+ D F + + +
Sbjct: 280 ADHSRAIAFMITDGILPSNEGRGYVLRRLIRRAYRFGRLIGLTDTF-------LHKTALK 332
Query: 356 IAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEP 415
+ +I+GD YPE++++ + + ++ EE ++FN +
Sbjct: 333 VVDIMGDDYPELRENSDFMARVVREEE------------------------DRFNRTLDK 368
Query: 416 GLVLGVKYLTKQLA--RDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFE 473
GL + L +LA + GD+AF LYDT+G +I+ ++A + ++ + F+
Sbjct: 369 GLSM----LEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFSVDEDGFK 424
Query: 474 QKLNELKERSKAK-AASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLV 532
+ E KER+KA S DI + P+ ++ + ++ Y C + +V
Sbjct: 425 ALMKEQKERAKAAWKGSGEKDI---ASRFQPLLEEGMRSEF------IGYDHLCGEGRIV 475
Query: 533 GIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAY 592
+ +D+HA+ +++ + + L+ ++T Y +GGQ DIG
Sbjct: 476 AL--------MDEHAL-------AVERLAAGQKGY--LVTNRTPFYGASGGQSGDIGT-- 516
Query: 593 LTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGL----TSRVEVDARM------- 641
+AS GK+ VV + K +P L VE D +
Sbjct: 517 ---------------IASPSGKV----RVVDTIKPSPELVVHHVEAVEGDILLDQEVDLT 557
Query: 642 -----RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVA 695
R+ R HT +HLL+AALRRVL Q V D DF+ + ++ + +A
Sbjct: 558 VTEDDRVASARNHTCTHLLHAALRRVLGDHVKQAGSLVAPDRLRFDFT-HIAPMTPEELA 616
Query: 696 AVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREP 755
AVE+ +N VI + ++ HM + + + GE Y D+V ++ I+D+ S E
Sbjct: 617 AVEREVNRVIMADIPLETDHMHYDDAVKRGAMALF-GEKYGDEVRVVAIADE----SVEL 671
Query: 756 CCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
C GTH+ TG ++ GVR I+ LTG ++ AV
Sbjct: 672 CGGTHLRATGQAGLFLIVSESGVAAGVRRIEALTGWNAMHAV 713
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D S+ F N+GM QFK +FLG Y R SQKC+RVGGKHNDL GR + HHT
Sbjct: 29 VPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSRATTSQKCLRVGGKHNDLENVGRTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A +FLT+ + LP +RLY T
Sbjct: 89 FFEMLGNFSFGDYFKEDAIKFAWKFLTE-ELKLPKERLYAT 128
>sp|B2SZN0|SYA_BURPP Alanine--tRNA ligase OS=Burkholderia phytofirmans (strain DSM 17436
/ PsJN) GN=alaS PE=3 SV=1
Length = 874
Score = 336 bits (862), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 250/811 (30%), Positives = 390/811 (48%), Gaps = 138/811 (17%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR FL +F ++GHT+V+SS +VP D ++ F NSGM QFK+VFLG PY R
Sbjct: 1 MKAAEIREKFLKFF-ESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+Q+ VR GGKHNDL G + HHTFFEMLGN+SF DY+KRDA A E LT
Sbjct: 60 ATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLT-GVYQ 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEG-------MKCNFWEMG 183
LP D+L+ T + D+E DIW E+GVP + I + G NFW+M
Sbjct: 119 LPKDKLWVTVY--------HEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMA 170
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
GPCG SEI YD G P S D + IEIWN+VF+ R + + PL
Sbjct: 171 DVGPCGPCSEIFYDHGPDVWGGPPGSP----EEDGDRYIEIWNLVFMQFSRDAQGNMTPL 226
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDT 298
K +DTG+G ER+ +LQ+ S Y+ DLF L+ K GR S+ T+
Sbjct: 227 PKQCVDTGMGLERIAAVLQHVHSNYEIDLFQALI---------KAAGRETGVSDLTN--N 275
Query: 299 SYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKV-KQGKLVKELSY 354
S ++++D+ R + + D + P + LR +VR A+ +K+ K+G +
Sbjct: 276 SLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAI---RHGYKLGKKGSFFHRMVA 332
Query: 355 NIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEE 414
++ +GD YPE++++ E R+ D LR+ E E+F E
Sbjct: 333 DLVAQMGDAYPELKEA----------EQRVTDVLRQ--------------EEERFFETIE 368
Query: 415 PGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ 474
G+ + L A+ + G++AF L+DTYG ++ ++ +++T+ AF++
Sbjct: 369 HGMSILESALADLEAKGGKT--LDGELAFKLHDTYGFPLDLTADVCREREVTVDEAAFDE 426
Query: 475 KLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGI 534
+ ++R +A+AA K+K + + + TF
Sbjct: 427 AM--ARQREQARAAG------------------KFKMAQGLEYSGAKTTFHGY------- 459
Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGV---A 591
+++ D I GAS+ ++ A V + D T YA +GGQ+ D GV A
Sbjct: 460 ---EEIVFDDAKVIALYVDGASVKEVRDGRQAVV--VLDHTPFYAESGGQVGDQGVLANA 514
Query: 592 YLTNTTQENGKVE---IGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRA 648
+ + KV+ +G +LE + G+VV + E+DA R R
Sbjct: 515 SVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVV-----------KAEIDAVRRARTARN 563
Query: 649 HTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIN-DVIA 706
H+ +HL++ ALR VL + QK V +D+ DF+ + ++ + + VE+ +N +V+A
Sbjct: 564 HSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFA-HNAPMTDEQIRRVEEIVNAEVLA 622
Query: 707 NQVQVDRRHMRASELPFLTHLT----VIPGEIYPDDVILIDISDKENVISREPCCGTHVF 762
N + R +PF + + GE Y D+V ++D+ SRE C GTHV
Sbjct: 623 NAPGIVRV------MPFDEAVKGGAMALFGEKYGDEVRVLDLG-----FSRELCGGTHVH 671
Query: 763 NTGHIESCTVIGYKSYNHGVRSIKCLTGDSS 793
TG I ++ G+R ++ +TGD++
Sbjct: 672 RTGDIGLFKIVMEGGVAAGIRRVEAITGDNA 702
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F NSGM QFK+VFLG PY R +Q+ +R GGKHNDL G + HHT
Sbjct: 28 VPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTAQRSVRAGGKHNDLENVGYTARHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+KRDA A E LT LP D+L+ T
Sbjct: 88 FFEMLGNFSFGDYFKRDAIHYAWELLT-GVYQLPKDKLWVT 127
>sp|Q32CN1|SYA_SHIDS Alanine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=alaS PE=3 SV=1
Length = 876
Score = 335 bits (860), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 261/817 (31%), Positives = 390/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
FE + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FEAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I +A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQDAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G +++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFVVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNAQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
>sp|A6U9N4|SYA_SINMW Alanine--tRNA ligase OS=Sinorhizobium medicae (strain WSM419)
GN=alaS PE=3 SV=1
Length = 887
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 249/798 (31%), Positives = 371/798 (46%), Gaps = 108/798 (13%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQ 76
IRS FLDYF GH +V SSP+VP D ++ F N+GM QFKNVF GL PY A +Q
Sbjct: 7 IRSMFLDYF-RKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYSTAATAQ 65
Query: 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDR 136
KCVR GGKHNDL G + HHTFFEMLGN+SF DY+K A +A +TK L R
Sbjct: 66 KCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITK-EYGLDAKR 124
Query: 137 LYFTYFGGSDQYGLPCDEETRDIWLEL-GVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIH 195
L T + D+E +W ++ G+ D I + NFW MG TGPCG SEI
Sbjct: 125 LLVTVY--------HTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIF 176
Query: 196 YD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
YD G P SA + D + IEIWN+VF+ +++++ + V L + IDTG+G E
Sbjct: 177 YDHGDHIWGGPPGSA----DEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLE 232
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
RL +LQ + YD DLF L+ E+ +G K G D S+R+++D+ R
Sbjct: 233 RLAAVLQGQHDNYDIDLFRALIAASEEATGVKAEG---------DRRASHRVIADHLRSS 283
Query: 311 TVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 367
+AD + P + LR ++R A+ ++ Q L+ +L + +G YPE+
Sbjct: 284 AFLIADGVLPSNEGRGYVLRRIMRRAMRHAQ--LLGAQDPLMWKLLPALVGQMGRAYPEL 341
Query: 368 QDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK 426
+ I L EE+R L + N++EE L
Sbjct: 342 VRAEALISETLKLEETRFRKTLERG-----------------LNLLEEASADL------- 377
Query: 427 QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAK 486
+ +G+ AF LYDTYG ++ Q+ AK + + +AF + +++++A+
Sbjct: 378 -----SEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGIGVDTDAFTAAMQ--RQKAEAR 430
Query: 487 AASNVPDIDLMDLKHFPVTDDKYKYDY-HYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDK 545
A + F + D D+ YDT S G++ Q D
Sbjct: 431 ANWTGSGDAATETIWFELRDKHGATDFLGYDTESAE-----------GVI---QAIVRDG 476
Query: 546 HAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEI 605
+ A G ++ L+ ++T Y +GGQ+ D GV T E+GK+ +
Sbjct: 477 TVVESASKGETVQ-----------LVLNQTPFYGESGGQVGDTGV-----VTTESGKLTV 520
Query: 606 GELASL-EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL- 663
+ EG VH+ VV V G + + VD R H+ +HLL+ ALR VL
Sbjct: 521 TDTQKRGEGLFVHY-CVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALREVLG 579
Query: 664 TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPF 723
T QK V + D S + + ++ + + VE+ N++I V R M +
Sbjct: 580 THVSQKGSLVAPERLRFDVS-HPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDD-AI 637
Query: 724 LTHLTVIPGEIYPDDVILIDI------SDKENVISREPCCGTHVFNTGHIESCTVIGYKS 777
+ GE Y D+V ++ + S S E C GTHV TG I ++ +
Sbjct: 638 AEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSESA 697
Query: 778 YNHGVRSIKCLTGDSSKA 795
GVR ++ LTG++++A
Sbjct: 698 VGSGVRRVEALTGEAARA 715
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFKNVF GL PY A +QKC+R GGKHNDL G + HHT
Sbjct: 29 VPRNDPTLMFTNAGMVQFKNVFTGLEQRPYSTAATAQKCVRAGGKHNDLDNVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K A +A +TK L RL T
Sbjct: 89 FFEMLGNFSFGDYFKERAIELAWNLITK-EYGLDAKRLLVT 128
>sp|B1K026|SYA_BURCC Alanine--tRNA ligase OS=Burkholderia cenocepacia (strain MC0-3)
GN=alaS PE=3 SV=1
Length = 874
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 241/800 (30%), Positives = 382/800 (47%), Gaps = 116/800 (14%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
+ + IR FL +F ++GHT+V+SS +VP D ++ F NSGM QFK+VFLG P PY R
Sbjct: 1 MKAAEIREKFLKFF-ESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSR 59
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+Q+ VR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT
Sbjct: 60 ATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLT-TVYQ 118
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEG-------MKCNFWEMG 183
LP D+L+ T + D+E DIW E+GVP + I + G NFW MG
Sbjct: 119 LPKDKLWVTVY--------QEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMG 170
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWN+VF+ R + + L
Sbjct: 171 DTGPCGPCTEIFYDHGPDVWGGPPGSP----EEDGDRYIEIWNLVFMQFNRDAQGNMTRL 226
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDT 298
K +DTG+G ERL +LQ+ S Y+ DLF L+ K R S+ T+
Sbjct: 227 PKQSVDTGMGLERLAAVLQHVHSNYEIDLFQNLI---------KAAARVTEISDLTN--N 275
Query: 299 SYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKV-KQGKLVKELSY 354
S ++++D+ R + + D + P + LR +VR A+ +K+ ++G +L
Sbjct: 276 SLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHG---YKLGRKGAFFHKLVA 332
Query: 355 NIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEE 414
++ +G YPE++++ E R+ D LR+ E E+F E
Sbjct: 333 DLVAEMGTAYPELKEA----------EQRVTDVLRQ--------------EEERFFETIE 368
Query: 415 PGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ 474
G+ + L A+ + + G++AF L+DTYG ++ ++ + +T+ AF+
Sbjct: 369 HGMSILEAALADVEAKGGKV--LDGELAFKLHDTYGFPLDLTADVCRERGMTVDEPAFDD 426
Query: 475 KLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGI 534
+ ++R +A+AA K+K + + + TF
Sbjct: 427 AM--ARQREQARAAG------------------KFKATQGLEYSGAKTTFHGY------- 459
Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
+++ D + G++++ ++ +A V + D T YA +GGQ+ D GV L
Sbjct: 460 ---EEIAFDDAKVVALYVDGSAVNEVKAGQDAVV--VLDHTPFYAESGGQVGDQGV--LA 512
Query: 595 NTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHL 654
N + + + ++ ++ + + G R E+DA+ R R H+ +HL
Sbjct: 513 NAAT---RFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHL 569
Query: 655 LNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDR 713
++ ALR VL QK V +D+ DF+ + ++ D + VE+ +ND I
Sbjct: 570 MHKALREVLGAHVQQKGSLVDADKTRFDFA-HNAPMTDDEIRRVEQIVNDEILANAPGIV 628
Query: 714 RHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVI 773
R M E + + GE Y D+V ++D+ SRE C GTHV TG I ++
Sbjct: 629 RVMPYDEAVKGGAMALF-GEKYGDEVRVLDLG-----FSRELCGGTHVHRTGDIGLFKIV 682
Query: 774 GYKSYNHGVRSIKCLTGDSS 793
G+R ++ +TGD++
Sbjct: 683 VEGGVAAGIRRVEAITGDNA 702
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F NSGM QFK+VFLG P PY R +Q+ +R GGKHNDL G + HHT
Sbjct: 28 VPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATTAQRSVRAGGKHNDLENVGYTARHHT 87
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT LP D+L+ T
Sbjct: 88 FFEMLGNFSFGDYFKHDAIKFAWELLT-TVYQLPKDKLWVT 127
>sp|A8ANQ1|SYA_CITK8 Alanine--tRNA ligase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=alaS PE=3 SV=1
Length = 875
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 254/815 (31%), Positives = 382/815 (46%), Gaps = 141/815 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP DRL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKDRLWVTVY--------ETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S Y+ DLF L+E + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLV 349
S R+++D+ R +AD + P + LR ++R A +L +++ F K
Sbjct: 279 KSLRVIADHIRSCAFLIADGVVPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYK----- 333
Query: 350 KELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQF 409
L + +++G E++ +++ +L + E EQF
Sbjct: 334 --LVGPLIDVMGSAGEELKRQQAQVEQVL------------------------KTEEEQF 367
Query: 410 NIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCH 469
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 368 ARTLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDE 422
Query: 470 EAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDT 529
FE + E +R +A+ AS D D ++ K Y L+
Sbjct: 423 AGFEAAMEE--QRRRAREASGFG----ADYNAMIRVDGASEF--------KGYDHLELNG 468
Query: 530 NLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD-- 587
+ + + G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 469 KVTALFV----------------DGKAVDAISAGQEAVV--VLDQTPFYAESGGQVGDKG 510
Query: 588 ----IGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRL 643
G A+ + TQ+ G+ IG + +L + G+ V + +VD R
Sbjct: 511 ELKGAGFAFAVSDTQKYGQA-IGHIGTLSTGSLKVGDAVQA-----------DVDDARRA 558
Query: 644 GCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIN 702
H+ +HL++AALR++L T QK V DFS + E + + AVE +N
Sbjct: 559 RIRLNHSATHLMHAALRQILGTHVAQKGSLVNDKVLRFDFS-HNEAMKPSEIRAVEDLVN 617
Query: 703 DVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVF 762
I + V+ M E + GE Y D V ++ + D S E C GTH
Sbjct: 618 AQIRRNLPVETNIMDL-EAAKAKGAMALFGEKYDDRVRVLSMGD----FSTELCGGTHAS 672
Query: 763 NTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I ++ GVR I+ +TG+ + A +
Sbjct: 673 RTGDIGLFRIVSESGTAAGVRRIEAVTGEGAIATL 707
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP DRL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKDRLWVT 131
>sp|P00957|SYA_ECOLI Alanine--tRNA ligase OS=Escherichia coli (strain K12) GN=alaS PE=1
SV=2
Length = 876
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 261/817 (31%), Positives = 388/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
FE + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FEAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQEAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G ++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFAVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNTQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
>sp|B1XCM5|SYA_ECODH Alanine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B)
GN=alaS PE=3 SV=1
Length = 876
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 261/817 (31%), Positives = 388/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
FE + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FEAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQEAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G ++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFAVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNTQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
>sp|Q0TEI3|SYA_ECOL5 Alanine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=alaS PE=3 SV=1
Length = 876
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 261/817 (31%), Positives = 388/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
FE + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FEAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQEAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G ++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFAVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNAQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
>sp|A8A3H4|SYA_ECOHS Alanine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=alaS
PE=3 SV=1
Length = 876
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 261/817 (31%), Positives = 388/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P + LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
FE + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FEAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQEAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G ++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFAVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNAQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
>sp|Q1R804|SYA_ECOUT Alanine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC)
GN=alaS PE=3 SV=1
Length = 876
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 260/817 (31%), Positives = 389/817 (47%), Gaps = 145/817 (17%)
Query: 13 CSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRV 72
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 STAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VS 131
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA + A E LT +
Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIW-LELGVPRDHIKKEG-------MKCNFWEMG 183
LP +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 LPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 174
Query: 184 STGPCGYSSEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL 238
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 DTGPCGPCTEIFYDHGDHIWGGPPGSP----EEDGDRYIEIWNIVFMQFNRQADGTMEPL 230
Query: 239 SKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDL-D 297
K +DTG+G ER+ +LQ+ S YD DLF L++ + KV+GA TDL +
Sbjct: 231 PKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA------------TDLSN 278
Query: 298 TSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLV---KE 351
S R+++D+ R +AD + P ++ LR ++R A V+ G ++ +
Sbjct: 279 KSLRVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRA---------VRHGNMLGAKET 329
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
Y + L DV + + + Q A V++ ++KT E EQF
Sbjct: 330 FFYKLVGPLIDVMGSAGEDLKRQQ---------------AQVEQ---VLKT--EEEQFAR 369
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ T + G+ AF LYDTYG ++ ++ + + +
Sbjct: 370 TLERGLAL----LDEELAKLSGDT-LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 424
Query: 472 FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH----YDTNSKRYTFPCL 527
F+ + E +R +A+ AS + DY+ D+ S+ + L
Sbjct: 425 FDAAMEE--QRRRAREASG------------------FGADYNAMIRVDSASEFKGYDHL 464
Query: 528 DTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDD 587
+ N G V +D G ++D+I A V + D+T YA +GGQ+ D
Sbjct: 465 ELN--GKVT---ALFVD---------GKAVDAINAGQEAVV--VLDQTPFYAESGGQVGD 508
Query: 588 IG------VAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641
G ++ TQ+ G+ IG + L + G+ V + +VD
Sbjct: 509 KGELKGANFSFAVEDTQKYGQA-IGHIGKLAAGSLKVGDAVQA-----------DVDEAR 556
Query: 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 700
R H+ +HL++AALR+VL T QK V DFS + E + + + AVE
Sbjct: 557 RARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFS-HNEAMKPEEIRAVEDL 615
Query: 701 INDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTH 760
+N I + ++ M E + GE Y + V ++ + D S E C GTH
Sbjct: 616 VNAQIRRNLPIETNIMDL-EAAKAKGAMALFGEKYDERVRVLSMGD----FSTELCGGTH 670
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAV 797
TG I +I GVR I+ +TG+ + A V
Sbjct: 671 ASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATV 707
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 30 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
FFEMLGN+SF DY+K DA + A E LT +LP +RL+ T
Sbjct: 90 FFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVT 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,442,012
Number of Sequences: 539616
Number of extensions: 15401133
Number of successful extensions: 40983
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 34129
Number of HSP's gapped (non-prelim): 2391
length of query: 925
length of database: 191,569,459
effective HSP length: 127
effective length of query: 798
effective length of database: 123,038,227
effective search space: 98184505146
effective search space used: 98184505146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)