Query psy6339
Match_columns 925
No_of_seqs 443 out of 2318
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:51:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0188|consensus 100.0 5E-223 1E-227 1870.8 48.2 717 12-802 2-722 (895)
2 COG0013 AlaS Alanyl-tRNA synth 100.0 1E-219 2E-224 1926.5 63.0 712 10-810 4-723 (879)
3 PLN02900 alanyl-tRNA synthetas 100.0 1E-216 3E-221 1951.5 68.0 727 10-810 9-756 (936)
4 TIGR00344 alaS alanine--tRNA l 100.0 9E-210 2E-214 1888.4 67.0 707 16-810 1-716 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 6E-206 1E-210 1861.7 66.8 701 11-809 1-708 (865)
6 PRK01584 alanyl-tRNA synthetas 100.0 3E-186 6E-191 1608.9 53.2 582 12-789 1-592 (594)
7 TIGR03683 A-tRNA_syn_arch alan 100.0 1E-183 2E-188 1663.6 58.9 649 9-810 53-755 (902)
8 PRK13902 alaS alanyl-tRNA synt 100.0 4E-183 9E-188 1657.6 58.7 649 9-810 56-751 (900)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 3E-169 6E-174 1478.5 10.3 544 16-641 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 1E-107 3E-112 844.6 18.3 231 14-259 1-232 (232)
11 PLN02961 alanine-tRNA ligase 100.0 2.9E-45 6.3E-50 387.2 24.1 209 567-788 2-222 (223)
12 COG2872 Predicted metal-depend 100.0 3.7E-45 8E-50 385.4 22.4 211 569-794 26-239 (241)
13 cd00673 AlaRS_core Alanyl-tRNA 100.0 9.7E-40 2.1E-44 339.0 6.7 115 801-920 6-123 (232)
14 PF01411 tRNA-synt_2c: tRNA sy 100.0 5.9E-39 1.3E-43 377.7 6.9 119 801-920 4-126 (552)
15 PLN02900 alanyl-tRNA synthetas 100.0 5.1E-39 1.1E-43 393.8 5.9 120 800-920 17-144 (936)
16 KOG0188|consensus 100.0 5.5E-39 1.2E-43 367.5 4.9 109 810-920 20-129 (895)
17 COG0013 AlaS Alanyl-tRNA synth 100.0 1.4E-37 3.1E-42 371.3 6.6 116 799-919 11-129 (879)
18 TIGR00344 alaS alanine--tRNA l 100.0 5.5E-37 1.2E-41 374.9 6.1 115 801-920 4-121 (851)
19 PRK00252 alaS alanyl-tRNA synt 100.0 1.2E-36 2.7E-41 373.3 4.3 114 802-920 10-126 (865)
20 PRK01584 alanyl-tRNA synthetas 100.0 2.4E-36 5.2E-41 353.1 5.4 115 801-920 8-126 (594)
21 PRK13902 alaS alanyl-tRNA synt 100.0 1.1E-32 2.4E-37 338.0 5.8 142 752-916 35-185 (900)
22 KOG2105|consensus 100.0 1.8E-30 3.8E-35 271.6 17.3 216 567-807 43-263 (415)
23 TIGR03683 A-tRNA_syn_arch alan 100.0 5E-32 1.1E-36 332.3 6.4 141 752-916 32-181 (902)
24 PLN02837 threonine-tRNA ligase 99.9 3.2E-25 7E-30 265.5 12.2 243 630-887 29-288 (614)
25 PRK12305 thrS threonyl-tRNA sy 99.9 5.8E-24 1.2E-28 254.0 11.4 229 645-887 7-247 (575)
26 PLN02908 threonyl-tRNA synthet 99.9 2.2E-22 4.8E-27 244.0 13.6 229 642-886 117-361 (686)
27 PRK00413 thrS threonyl-tRNA sy 99.9 5.5E-22 1.2E-26 239.7 13.2 246 626-886 50-310 (638)
28 PRK12444 threonyl-tRNA synthet 99.8 3.6E-21 7.7E-26 232.5 13.0 229 644-887 72-315 (639)
29 TIGR00418 thrS threonyl-tRNA s 99.8 7.3E-20 1.6E-24 218.3 8.5 226 648-887 1-241 (563)
30 COG0441 ThrS Threonyl-tRNA syn 99.8 1.3E-18 2.9E-23 204.4 11.4 223 645-886 27-260 (589)
31 KOG1637|consensus 99.7 1.6E-18 3.5E-23 192.5 2.0 162 647-886 69-232 (560)
32 PF07973 tRNA_SAD: Threonyl an 99.4 4.1E-13 8.8E-18 106.8 4.8 44 739-786 1-44 (44)
33 smart00863 tRNA_SAD Threonyl a 99.1 5.7E-11 1.2E-15 94.3 3.9 44 739-786 1-44 (44)
34 PRK14799 thrS threonyl-tRNA sy 99.0 4E-11 8.6E-16 142.1 0.7 173 672-886 30-208 (545)
35 cd00768 class_II_aaRS-like_cor 95.2 0.038 8.3E-07 57.0 6.5 108 15-132 3-134 (211)
36 PRK09348 glyQ glycyl-tRNA synt 94.6 0.26 5.6E-06 53.2 10.7 221 10-343 2-229 (283)
37 TIGR00388 glyQ glycyl-tRNA syn 93.3 0.59 1.3E-05 50.7 10.4 171 12-269 1-180 (293)
38 cd00733 GlyRS_alpha_core Class 92.1 1.1 2.4E-05 48.4 10.3 167 15-265 3-176 (279)
39 PRK14908 glycyl-tRNA synthetas 89.4 1.8 3.9E-05 55.4 10.5 174 11-269 4-184 (1000)
40 TIGR00462 genX lysyl-tRNA synt 89.1 1.7 3.7E-05 48.9 9.2 96 15-127 5-121 (304)
41 cd00776 AsxRS_core Asx tRNA sy 88.2 2.1 4.5E-05 48.5 9.2 83 15-112 28-126 (322)
42 COG0752 GlyQ Glycyl-tRNA synth 88.1 3.1 6.7E-05 44.9 9.6 167 10-265 3-181 (298)
43 PF02091 tRNA-synt_2e: Glycyl- 86.9 1.3 2.8E-05 48.3 6.1 166 16-265 3-175 (284)
44 TIGR00458 aspS_arch aspartyl-t 84.9 3.7 8.1E-05 48.4 9.3 91 16-124 138-245 (428)
45 PRK03932 asnC asparaginyl-tRNA 81.7 10 0.00022 45.1 11.2 96 16-122 138-251 (450)
46 TIGR00499 lysS_bact lysyl-tRNA 78.3 3.3 7.1E-05 49.8 5.7 95 16-126 177-294 (496)
47 cd00669 Asp_Lys_Asn_RS_core As 77.3 4.1 9E-05 45.0 5.8 95 15-124 5-114 (269)
48 cd00670 Gly_His_Pro_Ser_Thr_tR 75.9 12 0.00027 39.6 8.8 108 15-133 6-149 (235)
49 PLN02850 aspartate-tRNA ligase 74.3 11 0.00025 45.6 8.8 83 16-110 230-325 (530)
50 KOG1501|consensus 72.3 5.7 0.00012 46.3 5.3 44 242-285 72-115 (636)
51 PRK05159 aspC aspartyl-tRNA sy 71.0 20 0.00043 42.5 9.7 96 16-123 141-255 (437)
52 PRK00488 pheS phenylalanyl-tRN 67.6 6.3 0.00014 45.0 4.4 40 212-261 275-324 (339)
53 PRK06462 asparagine synthetase 64.7 25 0.00054 40.2 8.5 28 241-268 299-326 (335)
54 PTZ00450 macrophage migration 63.9 3.7 8.1E-05 39.6 1.5 24 119-143 79-102 (113)
55 COG0016 PheS Phenylalanyl-tRNA 61.8 8 0.00017 44.1 3.8 60 190-261 262-321 (335)
56 KOG1759|consensus 59.3 4.9 0.00011 38.8 1.3 23 120-143 79-101 (115)
57 PF01422 zf-NF-X1: NF-X1 type 52.4 5.8 0.00013 26.7 0.4 9 185-193 12-20 (20)
58 PTZ00326 phenylalanyl-tRNA syn 50.9 13 0.00028 44.6 3.3 58 190-261 425-483 (494)
59 PTZ00397 macrophage migration 42.8 19 0.00042 34.4 2.6 29 114-143 74-102 (116)
60 PF01409 tRNA-synt_2d: tRNA sy 39.9 15 0.00032 40.3 1.4 22 241-262 212-233 (247)
61 PTZ00450 macrophage migration 37.8 18 0.00038 35.0 1.5 23 897-920 79-101 (113)
62 PLN02853 Probable phenylalanyl 34.9 34 0.00073 41.1 3.4 27 13-40 222-249 (492)
63 smart00438 ZnF_NFX Repressor o 33.6 18 0.00039 26.1 0.5 11 185-195 12-22 (26)
64 PF01187 MIF: Macrophage migra 33.6 14 0.00029 35.4 -0.1 23 120-143 78-100 (114)
65 KOG2783|consensus 33.5 20 0.00043 41.4 1.2 23 239-261 293-315 (436)
66 cd00777 AspRS_core Asp tRNA sy 29.7 28 0.00061 38.7 1.6 29 241-269 248-276 (280)
67 PRK04173 glycyl-tRNA synthetas 26.9 7.3 0.00016 46.3 -3.8 52 833-887 27-81 (456)
68 PRK12325 prolyl-tRNA synthetas 24.4 8.8 0.00019 45.4 -3.8 52 833-887 36-88 (439)
69 PF00152 tRNA-synt_2: tRNA syn 23.9 44 0.00095 37.9 1.8 90 15-113 26-130 (335)
70 PRK03991 threonyl-tRNA synthet 23.6 8.4 0.00018 47.5 -4.3 66 822-893 205-271 (613)
71 CHL00078 rpl5 ribosomal protei 23.6 60 0.0013 34.0 2.6 56 98-166 120-177 (181)
72 PTZ00401 aspartyl-tRNA synthet 23.5 1.1E+02 0.0025 37.4 5.3 82 16-112 218-316 (550)
73 PTZ00397 macrophage migration 23.5 63 0.0014 30.8 2.6 27 892-919 74-100 (116)
74 COG0017 AsnS Aspartyl/asparagi 20.9 53 0.0012 38.9 1.7 78 15-104 138-226 (435)
75 PF14813 NADH_B2: NADH dehydro 20.5 35 0.00075 30.4 0.1 11 145-155 60-70 (71)
76 PTZ00425 asparagine-tRNA ligas 20.4 48 0.001 40.8 1.3 51 69-127 343-399 (586)
77 TIGR00457 asnS asparaginyl-tRN 20.3 52 0.0011 39.3 1.5 28 241-268 417-444 (453)
78 cd00775 LysRS_core Lys_tRNA sy 20.0 53 0.0011 37.5 1.4 23 246-268 302-324 (329)
No 1
>KOG0188|consensus
Probab=100.00 E-value=4.6e-223 Score=1870.83 Aligned_cols=717 Identities=40% Similarity=0.664 Sum_probs=667.2
Q ss_pred cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCC
Q psy6339 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCA 91 (925)
Q Consensus 12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~V 91 (925)
||++|||++||+||+ ++.|++|+||||||.+||||||+|||||||||+|||+ -.+++|++|+|||||+||||||||+|
T Consensus 2 ~ta~evR~tFldfF~-~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDV 79 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFK-SKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDV 79 (895)
T ss_pred ccHHHHHHHHHHHHH-hcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHh
Confidence 899999999999999 5889999999999999999999999999999999999 56799999999999999999999999
Q ss_pred CCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCCCccc
Q psy6339 92 GRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK 171 (925)
Q Consensus 92 G~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~~~I~ 171 (925)
|+|.|||||||||||||||||||+|||.|||||||+ +||||+||||||||+||+.+|||+|.||++||+++|||++||+
T Consensus 80 GkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~-vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~srIL 158 (895)
T KOG0188|consen 80 GKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTF-VYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDSRIL 158 (895)
T ss_pred chhccccCchhhcCCCCcchHHHHHHHHHHHHHHHH-hhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChhhcc
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHH
Q psy6339 172 KEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER 251 (925)
Q Consensus 172 ~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLER 251 (925)
+|+.+|||||||++||||||||||||+.++ ++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||||
T Consensus 159 p~~~kDNFWEMGdtGPCGPCtEIHyDriG~-r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfER 237 (895)
T KOG0188|consen 159 PFGMKDNFWEMGDTGPCGPCTEIHYDRIGG-RDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFER 237 (895)
T ss_pred CCccccchhhhcCCCCCCcchhhhhhhhcC-cchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHH
Confidence 999999999999999999999999999887 7888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hhHHH
Q psy6339 252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRN 328 (925)
Q Consensus 252 l~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRr 328 (925)
|++|||+|.||||||+|+||+++|++.++++ |+| ++.+.+|+||||+|||+||+++|||||++|+|+ |||||
T Consensus 238 LvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRR 312 (895)
T KOG0188|consen 238 LVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRR 312 (895)
T ss_pred HHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHH
Confidence 9999999999999999999999999999998 998 345678999999999999999999999999999 49999
Q ss_pred HHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhh
Q psy6339 329 VVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQ 408 (925)
Q Consensus 329 ilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~ 408 (925)
|||||+||++..++.++ +||.+|||+|++.||++||||+.+...|.+||..||+.|.+|+
T Consensus 313 ILRRavrya~e~l~~~~-g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl------------------- 372 (895)
T KOG0188|consen 313 ILRRAVRYAHEKLNAPP-GFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTL------------------- 372 (895)
T ss_pred HHHHHHHHHHHHhCCCc-chhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHH-------------------
Confidence 99999999999999886 6899999999999999999999999999999999999999885
Q ss_pred hccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6339 409 FNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA 488 (925)
Q Consensus 409 ~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 488 (925)
++|.++|++.+.++++++.|||++||.||||||||+|||++||+|+|++||+++|+++.++.+++|+.+..
T Consensus 373 ---------~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~ 443 (895)
T KOG0188|consen 373 ---------DRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGG 443 (895)
T ss_pred ---------HHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCC
Confidence 45888888888888877899999999999999999999999999999999999999999988888887654
Q ss_pred CCC-cccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhccccce
Q psy6339 489 SNV-PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAW 567 (925)
Q Consensus 489 ~~~-~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 567 (925)
.+. ...+.+ .+-+|+|+|++||+ ++..++++|+++..++.. |.++. +|+ +
T Consensus 444 ~~~~i~ldvl-~el~p~TdDs~KY~----------~~~~~~~~il~l~~e~~~-------v~~~~---~g~--------~ 494 (895)
T KOG0188|consen 444 GKLSIDLDVL-SELVPPTDDSFKYN----------EFGVCKTRILALYREDQF-------VESIP---KGQ--------E 494 (895)
T ss_pred CCCcccHHHH-HhhCCCCCCccccc----------cCccchhhhhhhhcCCce-------eeecC---CCc--------e
Confidence 321 111111 11279999999863 346899999999988776 66654 677 9
Q ss_pred EEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHH
Q psy6339 568 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMR 647 (925)
Q Consensus 568 ~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr 647 (925)
+.||||+|+||+|+|||.+|+|.|...+.+. ..+.|..++. +|+|+|.+... +.|++|++|.+.+|.+||..+|+
T Consensus 495 ~givldktnFYaEqGGQ~~D~G~lv~~~~~~--~~fnV~~~~~-gg~vvh~g~l~--~~l~vgdqv~~~~De~rR~~im~ 569 (895)
T KOG0188|consen 495 CGIVLDKTNFYAEQGGQIYDTGKLVIDGDED--FVFNVKRVQV-GGYVVHIGVLE--GDLSVGDQVELHVDEERRQLIMR 569 (895)
T ss_pred EEEEeecceeehhcCCcccccceEEEecCcc--ceeehhhccc-CCEEEEEeeec--cccccchhHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999877432 3566666666 89999999873 68999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccc
Q psy6339 648 AHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHL 727 (925)
Q Consensus 648 ~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~ 727 (925)
+|||||||++|||+++..+.|+||+|.||++||||++ ..++|.+|++++|+.+|++|.++.+|...++++++|++..|+
T Consensus 570 nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~-k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~gl 648 (895)
T KOG0188|consen 570 NHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFST-KGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGL 648 (895)
T ss_pred cchHHHHHHHHHHHhcccccccccccChhHeeeeccc-CCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCc
Confidence 9999999999999999888999999999999999996 456999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHH
Q psy6339 728 TVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKH 802 (925)
Q Consensus 728 ~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~ee 802 (925)
++.|+|.||+.||||.+|.. ...++|+|||||+.|||+||.|.|++++++++|+|||.+|||++|.+++..+++
T Consensus 649 r~v~~E~YPdpVRVVsvg~~-~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~ 722 (895)
T KOG0188|consen 649 RAVFDEVYPDPVRVVSVGAG-QLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED 722 (895)
T ss_pred ccccCCccCCceEEEEeccc-cccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH
Confidence 99999999999999999853 347999999999999999999999999999999999999999999999998874
No 2
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-220 Score=1926.47 Aligned_cols=712 Identities=35% Similarity=0.600 Sum_probs=653.2
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLS 89 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld 89 (925)
.+||++|||++||+||+ +|||+++|||||||+||||||||||||+||||||+|.++||++|+||||||||+ ||||
T Consensus 4 ~~~t~~EiR~~FL~FF~-~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDie 78 (879)
T COG0013 4 MKLTTNEIRQKFLDFFE-KKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDID 78 (879)
T ss_pred ccCCHHHHHHHHHHHHH-HCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeecccccccc----Cchh
Confidence 56999999999999999 699999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCC
Q psy6339 90 CAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRD 168 (925)
Q Consensus 90 ~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~ 168 (925)
|||+|+|||||||||||||||||||+|||+|||||||+ +|||||||||||||+ .|+||+++|++ +|||++
T Consensus 79 NVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~-~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gip~~ 149 (879)
T COG0013 79 NVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTK-VLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGIPPE 149 (879)
T ss_pred hcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHh-hcCCCHHHEEEEEec--------CchHHHHHHHhhcCCCHH
Confidence 99999999999999999999999999999999999999 999999999999998 58999999986 899999
Q ss_pred cccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcc-cccCCCCCceEEeeeecccccccC-CCCccccCCCCccccc
Q psy6339 169 HIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSAL-ARVNADRNDLIEIWNIVFISHKRV-SADTIVPLSKNYIDTG 246 (925)
Q Consensus 169 ~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~-~~~~~~~~r~lEiwNlVFmqy~r~-~~g~l~~Lp~k~IDTG 246 (925)
||+|++.+||||+||+ ||||||||||||+|+.+++.. ..++.|++|||||||||||||||+ .+|+|.|||+||||||
T Consensus 150 rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTG 228 (879)
T COG0013 150 RIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTG 228 (879)
T ss_pred HeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccC
Confidence 9999999999999999 999999999999999987644 458999999999999999999999 6999999999999999
Q ss_pred chHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---
Q psy6339 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT--- 323 (925)
Q Consensus 247 mGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~--- 323 (925)
||||||+|||||++||||||+|.|||+.+++++|.. |.. +...++++|||||||+||++|||||||+|||+
T Consensus 229 mGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~-~~~-----~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrG 302 (879)
T COG0013 229 MGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKK-YGE-----DEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRG 302 (879)
T ss_pred ccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCc-CCc-----cccccceeEEEehhHHHHHHHHHhCCCCcCCCCcc
Confidence 999999999999999999999999999999999874 422 11223779999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccc
Q psy6339 324 AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQ 403 (925)
Q Consensus 324 ~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~ 403 (925)
||||||||||+|++++|+... |||++|||.+++.|+++||||+++++.|+++|+.||++|.+|
T Consensus 303 YvlRriiRRa~R~~~~LG~~~--~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~T--------------- 365 (879)
T COG0013 303 YVLRRIIRRALRHGKLLGIKE--PFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKT--------------- 365 (879)
T ss_pred HHHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 599999999999999876655 799999999999999999999999999999999999999998
Q ss_pred cchhhhccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHH
Q psy6339 404 PELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERS 483 (925)
Q Consensus 404 ~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s 483 (925)
|++|+++|++.+++.++++.|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++|
T Consensus 366 -------------L~~G~~l~~~~~~~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~a 432 (879)
T COG0013 366 -------------LERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERA 432 (879)
T ss_pred -------------HHHHHHHHHHHHHhhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHh
Confidence 4569999999998766457899999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhcc
Q psy6339 484 KAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLE 563 (925)
Q Consensus 484 r~~~~~~~~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~ 563 (925)
|+++.++...........+ +....++|. ||+.+..+++|++|+.++.. |++++ +|+
T Consensus 433 r~~~~~~~~~~~~~~~~~~---~~~~~tef~------gY~~~~~~~~i~~l~~~~~~-------v~~~~---~g~----- 488 (879)
T COG0013 433 RASAGSGEGAKESEDLELI---DKLPETEFL------GYDDLEMEFKVLVLFVDGKE-------VSELN---EGQ----- 488 (879)
T ss_pred hhccccccccchhhhhhhh---ccCCCceee------ecccccceEEEEEEEecCcc-------ccccc---CCc-----
Confidence 9754111100110000001 111235676 78888999999999987753 55665 566
Q ss_pred ccceEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeC-CEEEEEEEeecccccCCCCeEEEEEchhch
Q psy6339 564 HNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLE-GKIVHFGNVVSSFKVTPGLTSRVEVDARMR 642 (925)
Q Consensus 564 ~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~-g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR 642 (925)
.++||||+||||||||||++|+|+|..+++ ..+.|.||||.+ +.++|.+.... +.|++|+.|.++|||+||
T Consensus 489 ---~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~----~~~~V~dvqK~~~~~~vH~~~~~~-G~l~~gd~V~~~vD~~rR 560 (879)
T COG0013 489 ---EVYVVLDQTPFYAESGGQVGDTGYIFGDGG----GRFEVTDVQKVGNGVIVHKGKVES-GELKVGDEVTAEVDEERR 560 (879)
T ss_pred ---eEEEEEecCCccCCCCCccCceEEEEecCC----cEEEEEEEEEcCCceEEEEEeecc-CccCCCCEEEEEECHHHH
Confidence 899999999999999999999999997642 589999999987 89999999864 589999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccc
Q psy6339 643 LGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASEL 721 (925)
Q Consensus 643 ~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA 721 (925)
.++|+||||||||++|||+++ +|++|+||.++++++||||+|+ +++|.|+|++||++||++|++|.||++.+|++++|
T Consensus 561 ~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~-~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eA 639 (879)
T COG0013 561 RRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHY-KALTAEELKEIERLVNEIIRENLPVKTEEMDLDEA 639 (879)
T ss_pred HHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCC-CCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHH
Confidence 999999999999999999999 9999999999999999999985 89999999999999999999999999999999999
Q ss_pred ccccccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHH
Q psy6339 722 PFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGK 801 (925)
Q Consensus 722 ~~~~g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~e 801 (925)
+++ |++++|||+|++.||||+||+ +|+|+||||||.|||+||.|||++++++++|+|||+|+||..|+++++..+
T Consensus 640 k~~-Ga~alfGekY~~~VRVV~ig~----~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~ 714 (879)
T COG0013 640 KAK-GAMALFGEKYGDEVRVVEIGD----FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQE 714 (879)
T ss_pred HHh-ChHhhcCCcCCCeEEEEEECC----ceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHH
Confidence 776 999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc
Q psy6339 802 HLSTAASFS 810 (925)
Q Consensus 802 eIL~elsk~ 810 (925)
+++.+++..
T Consensus 715 ~~l~~~a~~ 723 (879)
T COG0013 715 DLLKEIASL 723 (879)
T ss_pred HHHHHHHHH
Confidence 999998854
No 3
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.4e-216 Score=1951.53 Aligned_cols=727 Identities=37% Similarity=0.643 Sum_probs=661.8
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCC-----CCCCccccccccccCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPA-----PYPRVANSQKCVRVGGK 84 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p-----~~~r~~~~QkCiR~gGK 84 (925)
+.|+++|||++||+||+ ++||+++|||||||+|||||||||||||||||||+|+++| |++|+||||||||+|||
T Consensus 9 ~~~~~~eiR~~Fl~FF~-~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGK 87 (936)
T PLN02900 9 KEWPGDRIRRTFLSFFE-SKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGK 87 (936)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCC
Confidence 47999999999999999 6999999999999999999999999999999999999999 78999999999999999
Q ss_pred CCCCCCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcC
Q psy6339 85 HNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELG 164 (925)
Q Consensus 85 HnDld~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~G 164 (925)
||||||||+|+|||||||||||||||||||+|||+|||||||+ +|||||+|||||||+||+.+ |+|+||++||+++
T Consensus 88 HnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~-~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~iW~~~- 163 (936)
T PLN02900 88 HNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTK-VYGLPADRLYATYFGGDEKQ--APDDEARAIWLDY- 163 (936)
T ss_pred CCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHH-hcCCCHHHEEEEEeCCCCCc--CCCHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999 99999999999999999874 9999999999998
Q ss_pred CCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCccc
Q psy6339 165 VPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYID 244 (925)
Q Consensus 165 v~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ID 244 (925)
||++||+++|.+||||+||+|||||||||||||+|+++++..+ ||.+|+|||||||||||||||++||+|+|||+||||
T Consensus 164 ~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~-~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~ID 242 (936)
T PLN02900 164 LPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADL-VNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVD 242 (936)
T ss_pred CCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCcccc-CCCCCCCEEEEeeeeeeeeeecCCCceeeCCCCeee
Confidence 9999999999999999999999999999999999998766433 788899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc-
Q psy6339 245 TGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT- 323 (925)
Q Consensus 245 TGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~- 323 (925)
||||||||||||||++||||||+|.|||+.|++++|+++|+|....++....++||||||||+||++|||+||++|||+
T Consensus 243 TGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN~g 322 (936)
T PLN02900 243 TGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSNEG 322 (936)
T ss_pred cCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCccCCCC
Confidence 9999999999999999999999999999999999998888875432222345789999999999999999999999999
Q ss_pred --hhHHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccc
Q psy6339 324 --AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVK 401 (925)
Q Consensus 324 --~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~ 401 (925)
||||||||||+|+|+++++... +||++||+.|++.|++.||||.++++.|++||..||++|.+|+
T Consensus 323 rgYvlRrilRRa~r~~~~~lg~~~-~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl------------ 389 (936)
T PLN02900 323 RGYVLRRLLRRAVRYGRLLLGAEE-GFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTL------------ 389 (936)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHH------------
Confidence 5999999999999988445543 7999999999999999999999999999999999999999884
Q ss_pred cccchhhhccccchhHhhHHHHHHHHHhcCCC--CCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHH
Q psy6339 402 TQPELEQFNIMEEPGLVLGVKYLTKQLARDPS--ITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479 (925)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~--~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~ 479 (925)
.+|+++|++.+++.++ .+.|||++||+||||||||+|||++||+|+|++||+++|+++|++|
T Consensus 390 ----------------~~G~~~l~~~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~ 453 (936)
T PLN02900 390 ----------------EKGIEKFKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEA 453 (936)
T ss_pred ----------------HHHHHHHHHHHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHH
Confidence 5688889988875431 2679999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC---cccc-----cccccCCCCcCCCCceeeeecCCCCcccccc-ccceEEEEEeCCeeeecccccccc
Q psy6339 480 KERSKAKAASNV---PDID-----LMDLKHFPVTDDKYKYDYHYDTNSKRYTFPC-LDTNLVGIVIGDQVFCIDKHAIRH 550 (925)
Q Consensus 480 ~~~sr~~~~~~~---~~~~-----~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~-~~akVl~i~~~~~~~~~~~~~v~~ 550 (925)
|++||++++.+. ...+ .+.....+. +++|. ||+..+ ++|+|++|+.+++. |++
T Consensus 454 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~t~f~------gY~~~~~~~~~v~~i~~~~~~-------v~~ 515 (936)
T PLN02900 454 RERSRAAHLKAGGGAIELAAEATSWLQKQGVAA-----TDDFL------KYDWLSDHEAVVKAILTGGGF-------VES 515 (936)
T ss_pred HHHHHhhhhccccccccccHHHHHHHHhccCCC-----CCccc------ccccCCccceEEEEEEECCce-------eee
Confidence 999987653211 1111 111111121 23454 788878 89999999987765 666
Q ss_pred cccCCCCcchhccccceEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCC
Q psy6339 551 ARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPG 630 (925)
Q Consensus 551 ~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G 630 (925)
++ +|+ .+.|+||+|+|||||||||+|+|+|..+++ ..+.|.+|++.+|.++|.+...+ +.+++|
T Consensus 516 ~~---~g~--------~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~----~~~~V~dv~k~~g~i~H~~~~~~-g~l~~G 579 (936)
T PLN02900 516 VS---EGD--------EVGIVLDKTSFYAESGGQIGDTGVLEGSGG----AVVEVSDVQKAGGFVLHIGTVTE-GSVSVG 579 (936)
T ss_pred cc---CCC--------eEEEEEeCCCCCCCCCCCCCCEEEEecCCC----CEEEEEEEEEECCEEEEEEEecc-CCCCCC
Confidence 65 455 789999999999999999999999986542 16899999999999999987643 468999
Q ss_pred CeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccC
Q psy6339 631 LTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQV 709 (925)
Q Consensus 631 ~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~ 709 (925)
++|.+.|||+||+++|++|||+|||++||++++ .++.|+|++++++++||||++ .+++|++++.+||+.||++|++|+
T Consensus 580 ~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~-~~~lt~eel~~IE~~vNe~I~~n~ 658 (936)
T PLN02900 580 DAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSH-GKPMTPEELREVESLVNEWIGDAL 658 (936)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeC-CCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999 889999999999999999997 478999999999999999999999
Q ss_pred CeeEEEcCccccccccccccccCCcCCCcEEEEEeCCCCCcc-cccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEE
Q psy6339 710 QVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVI-SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 788 (925)
Q Consensus 710 pV~~~~~~~eEA~~~~g~~~l~geky~~~vRVV~Ig~~~~~~-~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~v 788 (925)
||++.+++++||.+..|++++++++|++.||||+|++ + |.++||||||.|||+||.|+|++++++++|++||+|+
T Consensus 659 pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~----~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v 734 (936)
T PLN02900 659 PVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGG----VYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAV 734 (936)
T ss_pred CeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEECC----ccceeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEE
Confidence 9999999999998778999999999999999999999 8 9999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhhhc
Q psy6339 789 TGDSSKAAVENGKHLSTAASFS 810 (925)
Q Consensus 789 tG~~A~~~~~~~eeIL~elsk~ 810 (925)
||.+|++++++..+++++++..
T Consensus 735 ~G~~A~~~~~~~~~~l~~l~~~ 756 (936)
T PLN02900 735 TGGAAVEAINAADSLERELDSA 756 (936)
T ss_pred EcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=8.6e-210 Score=1888.36 Aligned_cols=707 Identities=33% Similarity=0.565 Sum_probs=638.4
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCCCCCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDS 95 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~VG~t~ 95 (925)
|||++||+||+ +|||+++|||||||+|||||||||||||||||||+|+++||++|+||||||||+ |||||||+|+
T Consensus 1 eiR~~fl~fF~-~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----nDld~VG~t~ 75 (851)
T TIGR00344 1 EIRQTFLDFFK-EKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRL----NDIENVGRTA 75 (851)
T ss_pred CHHHHHHHHHH-hCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhhhcCCC
Confidence 69999999999 699999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCCCcccccCC
Q psy6339 96 YHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGM 175 (925)
Q Consensus 96 rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~~~I~~~~~ 175 (925)
|||||||||||||||||||+|||+|||||||+ +|||||+|||||||++ |+||++||+++|||++||+++|.
T Consensus 76 rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~-~~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~~~~ 146 (851)
T TIGR00344 76 RHHTFFEMLGNFSFGDYFKEEAIAFAWELLTS-VLGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIRCGD 146 (851)
T ss_pred cchhhHHhhcccchhhhhHHHHHHHHHHHHhh-hcCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHcccCCc
Confidence 99999999999999999999999999999999 9999999999999974 89999999999999999999999
Q ss_pred ccCcccCCCCCCCcCceEEEeecCCCCCC--cccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHHHH
Q psy6339 176 KCNFWEMGSTGPCGYSSEIHYDMKGEPSS--ALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLV 253 (925)
Q Consensus 176 ~dNfW~~G~~GpcGPcsEI~~d~~~~~~~--~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLERl~ 253 (925)
+||||+||+ ||||||||||||+|+.+++ ....+|.||+|||||||||||||||++||+|+|||+||||||||||||+
T Consensus 147 ~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~ 225 (851)
T TIGR00344 147 KDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFV 225 (851)
T ss_pred cCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHH
Confidence 999999999 9999999999999987665 3345788999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCC--CCCceEEEEecCccceeeeecCCccCCCc---hhHHH
Q psy6339 254 TILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRT--DLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRN 328 (925)
Q Consensus 254 ~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~--~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRr 328 (925)
|||||++||||||+|.|||++|++++|+++|.+..+..+.. ..+.+|||||||+||++||||||++|||+ |||||
T Consensus 226 ~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYvlRr 305 (851)
T TIGR00344 226 AVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRR 305 (851)
T ss_pred HHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchhHHH
Confidence 99999999999999999999999999987554432221111 23469999999999999999999999999 59999
Q ss_pred HHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhh
Q psy6339 329 VVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQ 408 (925)
Q Consensus 329 ilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~ 408 (925)
|||||+|++++++... +||++|||.|++.|++.||||.++++.|++||+.||++|.+|+
T Consensus 306 ilRRa~r~~~~lg~~~--~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl------------------- 364 (851)
T TIGR00344 306 LIRRALRHGKKLGLKE--AFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTL------------------- 364 (851)
T ss_pred HHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 9999999998755444 8999999999999999999999999999999999999999874
Q ss_pred hccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6339 409 FNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA 488 (925)
Q Consensus 409 ~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 488 (925)
.+|+++|++.+++.++ +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 365 ---------~~G~~~l~~~~~~~~~-~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~ 434 (851)
T TIGR00344 365 ---------ERGLRLFEKLLKKLGK-KELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQ 434 (851)
T ss_pred ---------HHHHHHHHHHHHHhcC-CccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhh
Confidence 5689999999876533 679999999999999999999999999999999999999999999999998654
Q ss_pred CCCcccccccc-cCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhccccce
Q psy6339 489 SNVPDIDLMDL-KHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAW 567 (925)
Q Consensus 489 ~~~~~~~~~~~-~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 567 (925)
.+....+.... ...++ ++|. +|+..+++|+|++++.+++. |+++. .|+ .
T Consensus 435 ~~~~~~~~~~~~~~~~~------t~~l------~Y~~~~~~a~V~~i~~~~~~-------v~~~~---~g~--------~ 484 (851)
T TIGR00344 435 TISFELQEIALANVYPA------TEFL------GYEDLEFEAKVIGLFEDGKP-------VDEAE---AGQ--------S 484 (851)
T ss_pred cccccccHHHHhcccCC------cccc------ceecccccEEEEEEEeCCcc-------ceecc---cCC--------c
Confidence 32111110001 11122 3343 57777899999999977655 55554 444 6
Q ss_pred EEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHH
Q psy6339 568 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMR 647 (925)
Q Consensus 568 ~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr 647 (925)
+.|+||+|+|||||||||+|+|+|..++ ..++|.+|++.+|.++|++.... +.+++|++|.+.|||+||+++|+
T Consensus 485 ~~vvLd~T~FYpEgGGQp~D~G~I~~~~-----~~~~V~dv~~~~g~i~H~~~~~~-g~l~~G~~V~~~VD~~rR~~~m~ 558 (851)
T TIGR00344 485 VYVILDQTPFYAESGGQIGDTGYLIAND-----GKFRVVDVQKPNGVVFHFGEVEG-GSLKVGDKVIAVIDEKRRLRIMR 558 (851)
T ss_pred eEEEEeCCCCCCCCCCCCCCEEEEecCC-----cEEEEEEEEEECCEEEEEEEecc-CCCCCCCEEEEEEcHHHHHHHHH
Confidence 8999999999999999999999998543 47999999999999999987643 46899999999999999999999
Q ss_pred HhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccccc
Q psy6339 648 AHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTH 726 (925)
Q Consensus 648 ~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g 726 (925)
+|||+|||++||++++ .+++|+|++++++++||||++ .+++|++++++||+.||++|++++||++.+++++||.+..
T Consensus 559 ~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~-~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~- 636 (851)
T TIGR00344 559 NHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSH-YRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKG- 636 (851)
T ss_pred HHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcc-
Confidence 9999999999999999 899999999999999999997 4689999999999999999999999999999999997654
Q ss_pred cccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHh
Q psy6339 727 LTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTA 806 (925)
Q Consensus 727 ~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~e 806 (925)
..++++++|++.+|||+||+ +|.++||||||.|||+||.|+|++++++++|++||+++||.+|+++++...+.+++
T Consensus 637 ~~~~~~e~y~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~ 712 (851)
T TIGR00344 637 AFALFGEKYGEKVRVVSVGD----VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKE 712 (851)
T ss_pred hhhhcCCCCCCeEEEEEECC----eeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHH
Confidence 45567889988999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy6339 807 ASFS 810 (925)
Q Consensus 807 lsk~ 810 (925)
+++.
T Consensus 713 l~~~ 716 (851)
T TIGR00344 713 LADI 716 (851)
T ss_pred HHHH
Confidence 8854
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-206 Score=1861.71 Aligned_cols=701 Identities=36% Similarity=0.589 Sum_probs=640.0
Q ss_pred ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCC
Q psy6339 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSC 90 (925)
Q Consensus 11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~ 90 (925)
+||++|||++||+||+ ++||+++|||||||+|||||||||||||||||||+|+++||++|+||||||||+ |||||
T Consensus 1 ~~~~~eiR~~fl~fF~-~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDld~ 75 (865)
T PRK00252 1 MMTSAEIRQKFLDFFE-SKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT----NDLEN 75 (865)
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhh
Confidence 5899999999999999 699999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH-hcCCCCCc
Q psy6339 91 AGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDH 169 (925)
Q Consensus 91 VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~-~~Gv~~~~ 169 (925)
||+|+|||||||||||||||||||+|||+|||||||+ +|||||+|||||||++ |+||++||+ .+|||++|
T Consensus 76 VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~-~~~i~~~~l~vt~~~~--------D~e~~~iW~~~~g~~~~~ 146 (865)
T PRK00252 76 VGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTS-VLGLPKEKLYVTVYED--------DDEAYDIWKKEIGVPPER 146 (865)
T ss_pred ccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHH-HhCCCHHHEEEEEcCC--------CHHHHHHHHhccCCCHHH
Confidence 9999999999999999999999999999999999999 9999999999999974 899999999 58999999
Q ss_pred ccccCCccCcccCCCCCCCcCceEEEeecCCCCCC-cccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccch
Q psy6339 170 IKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSS-ALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLG 248 (925)
Q Consensus 170 I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~-~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmG 248 (925)
|++++.+||||+||++||||||||||||+|+.+++ ....+|+|+||||||||||||||||+++|+|.|||+||||||||
T Consensus 147 i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~G 226 (865)
T PRK00252 147 IIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMG 226 (865)
T ss_pred eecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcC
Confidence 99999999999999999999999999999987643 34568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hh
Q psy6339 249 FERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AK 325 (925)
Q Consensus 249 LERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~v 325 (925)
||||+|||||++||||||+|.|||++|++++|++ |. .++||||||||+||++|||+||++|||+ ||
T Consensus 227 lER~~~ilq~~~snydtd~f~~~i~~i~~~~~~~-y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYv 295 (865)
T PRK00252 227 LERIAAVLQGVHSNYETDLFRPLIKAIEELTGVK-YE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGRGYV 295 (865)
T ss_pred HHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCC-CC----------CCceEEEEcchHHHHHHHHccCcccCCCCcchH
Confidence 9999999999999999999999999999999984 63 2579999999999999999999999999 59
Q ss_pred HHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccc
Q psy6339 326 LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPE 405 (925)
Q Consensus 326 lRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~ 405 (925)
||||||||+|+++.++... +||++|||.|++.|+++||||.++++.|++||+.||++|.+|+
T Consensus 296 lRrilRRa~r~~~~lg~~~--~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl---------------- 357 (865)
T PRK00252 296 LRRILRRAVRHGRLLGIKE--PFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTL---------------- 357 (865)
T ss_pred HHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHH----------------
Confidence 9999999999997654444 7999999999999999999999999999999999999999874
Q ss_pred hhhhccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHh
Q psy6339 406 LEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKA 485 (925)
Q Consensus 406 ~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~ 485 (925)
.+|+++|++.+++.++.+.|||++||+||||||||+|||++||+++|++||+++|+++|++||++||+
T Consensus 358 ------------~~G~~~~~~~~~~~~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~ 425 (865)
T PRK00252 358 ------------ERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARA 425 (865)
T ss_pred ------------HHHHHHHHHHHHhccCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHh
Confidence 56888999988765323579999999999999999999999999999999999999999999999987
Q ss_pred hhcCCCcccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhcccc
Q psy6339 486 KAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHN 565 (925)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 565 (925)
.+..+.. ...+ ..+... ..++|. ||+..+++|+|++|+.+++. |+++. +|+
T Consensus 426 ~~~~~~~-~~~~--~~~~~~---~~t~f~------~Y~~~~~~a~v~~i~~~~~~-------~~~~~---~g~------- 476 (865)
T PRK00252 426 ARKFKGD-YNAL--EELLDD---LATEFV------GYDTLEAEAKVLALFVDGES-------VDSAK---AGE------- 476 (865)
T ss_pred hhhcccc-hhHH--HHHhhc---CCCeee------eeeeccccEEEEEEEeCCce-------eeecc---CCC-------
Confidence 6533210 0110 011111 124554 78888899999999977665 66655 455
Q ss_pred ceEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEe-CCEEEEEEEeecccccCCCCeEEEEEchhchHH
Q psy6339 566 AWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL-EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLG 644 (925)
Q Consensus 566 ~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~-~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~ 644 (925)
.+.|+||+|+|||||||||+|+|+|.. + ..++|.+|++. +|.++|++...+ +.+++|++|.+.|||+||++
T Consensus 477 -~~~vvLd~T~FYpegGGQ~~D~G~I~~-~-----~~~~V~~v~~~~~g~i~H~~~~~~-~~l~~G~~V~~~ID~~rR~~ 548 (865)
T PRK00252 477 -EVEVVLDKTPFYAESGGQVGDTGVIED-G-----GVFEVTDTQKPPNGLIVHRGKVEE-GELKVGDEVTAEVDEERRRA 548 (865)
T ss_pred -eEEEEEeCCCCCCCCCCCCCCEEEEee-C-----cEEEEEEEEEccCCEEEEEEEecc-CCCCCCCEEEEEEcHHHHHH
Confidence 789999999999999999999999986 3 37899999997 999999997643 46899999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccc
Q psy6339 645 CMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPF 723 (925)
Q Consensus 645 ~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~ 723 (925)
+|++|||+|||++||++++ .+++|+|++++++++||||++ .+++|++++++||+.||++|++++||++.+++++||.+
T Consensus 549 ~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~-~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~ 627 (865)
T PRK00252 549 IARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSH-FEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKK 627 (865)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeec-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh
Confidence 9999999999999999999 789999999999999999997 46899999999999999999999999999999999966
Q ss_pred ccccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHH
Q psy6339 724 LTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHL 803 (925)
Q Consensus 724 ~~g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeI 803 (925)
.+++++++++|++.+|||+||+ ++.++||||||+|||+||.|+|++.+++++|++||+++||.+|+++++...++
T Consensus 628 -~~~~~~~~~~y~~~VRVV~Ig~----~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~ 702 (865)
T PRK00252 628 -MGAMALFGEKYGDEVRVVSIGD----FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEAL 702 (865)
T ss_pred -CCchhhccccCCCeEEEEEECC----ceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHH
Confidence 5677778889999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q psy6339 804 STAASF 809 (925)
Q Consensus 804 L~elsk 809 (925)
++++++
T Consensus 703 l~~~~~ 708 (865)
T PRK00252 703 LKELAA 708 (865)
T ss_pred HHHHHH
Confidence 988774
No 6
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-186 Score=1608.86 Aligned_cols=582 Identities=32% Similarity=0.567 Sum_probs=535.6
Q ss_pred cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCC
Q psy6339 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCA 91 (925)
Q Consensus 12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~V 91 (925)
||++|||++||+||+ +|||+++|||||||+||||||||||||+||||||+|.++||++|+||||||||+ ||||||
T Consensus 1 ~~~~eiR~~fl~FF~-~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----~Dle~V 75 (594)
T PRK01584 1 MTLDELRKKYIDFFK-SKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRT----GDIDEV 75 (594)
T ss_pred CCHHHHHHHHHHHHH-hCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cccccc
Confidence 789999999999999 699999999999999999999999999999999999999999999999999999 799999
Q ss_pred CCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCC--CCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCCCc
Q psy6339 92 GRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP--VSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDH 169 (925)
Q Consensus 92 G~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~--l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~~~ 169 (925)
| |+|||||||||||||||||||+|||+|||||||+ + |||||+|||||||+||+. +|+|+||++||+++|||++|
T Consensus 76 G-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~-~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~~~r 151 (594)
T PRK01584 76 G-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTS-PDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIPKDR 151 (594)
T ss_pred C-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhcc-chhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCCHHH
Confidence 9 8999999999999999999999999999999999 8 999999999999998875 89999999999999999999
Q ss_pred ccccCCccCcc-cCCCCCCCcCceEEEeecCCCCCCcc-cccCCCCCceEEeeeecccccccCCCCccccCCCCcccccc
Q psy6339 170 IKKEGMKCNFW-EMGSTGPCGYSSEIHYDMKGEPSSAL-ARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247 (925)
Q Consensus 170 I~~~~~~dNfW-~~G~~GpcGPcsEI~~d~~~~~~~~~-~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGm 247 (925)
|++++.+|||| +||++||||||||||||+|+. ++.. +.++++|+|||||||||||||||++||+|+|||+|||||||
T Consensus 152 I~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGm 230 (594)
T PRK01584 152 IFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGM 230 (594)
T ss_pred eeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCc
Confidence 99999999999 799999999999999999876 3322 23667889999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecC--CccCCCc--
Q psy6339 248 GFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALAD--NMFPDAT-- 323 (925)
Q Consensus 248 GLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaD--Gv~Psn~-- 323 (925)
|||||+|||||++||||||+|.|||+.|++++|++ |... ...+.||||||||+||++||||| |++|||+
T Consensus 231 GLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~~-y~~~------~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~gr 303 (594)
T PRK01584 231 GIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKI-YGQN------EEDDRSIRIIADHIRAACFILGDPFVVLPSNVGQ 303 (594)
T ss_pred CHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCCC-cCCC------CCCceeEEEEecHHHHHHHHhhcccCCCCCCCCC
Confidence 99999999999999999999999999999999974 6321 22478999999999999999999 9999999
Q ss_pred -hhHHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhccccccc
Q psy6339 324 -AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKT 402 (925)
Q Consensus 324 -~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~ 402 (925)
||||||||||+|+|++++... +||++||+.|++.|+++||||.++++.|++||+.||++|.+|+
T Consensus 304 GYvlRrilRRa~r~~~~lg~~~--~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl------------- 368 (594)
T PRK01584 304 GYVLRRLIRRSIRHAKKLGIES--HFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTL------------- 368 (594)
T ss_pred chHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHH-------------
Confidence 599999999999998755444 8999999999999999999999999999999999999999884
Q ss_pred ccchhhhccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHH
Q psy6339 403 QPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKER 482 (925)
Q Consensus 403 ~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~ 482 (925)
++|+++|++.++++++++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++
T Consensus 369 ---------------~~G~~~l~~~i~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~ 433 (594)
T PRK01584 369 ---------------RKGEQEFIKLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKV 433 (594)
T ss_pred ---------------HHHHHHHHHHHHHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHH
Confidence 56889999988765434689999999999999999999999999999999999999999999988
Q ss_pred HHhhhcCCCcccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhc
Q psy6339 483 SKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQL 562 (925)
Q Consensus 483 sr~~~~~~~~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~ 562 (925)
||++ . . .+.
T Consensus 434 ~~~~--~-------------------------------~----------------~~f---------------------- 442 (594)
T PRK01584 434 SKKG--A-------------------------------D----------------KVF---------------------- 442 (594)
T ss_pred Hhhc--c-------------------------------c----------------ccc----------------------
Confidence 7642 0 0 000
Q ss_pred cccceEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhch
Q psy6339 563 EHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMR 642 (925)
Q Consensus 563 ~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR 642 (925)
. ||++|+|.
T Consensus 443 ----~---------------g~~~d~g~---------------------------------------------------- 451 (594)
T PRK01584 443 ----K---------------GGLADHSY---------------------------------------------------- 451 (594)
T ss_pred ----c---------------CCcCcccc----------------------------------------------------
Confidence 0 35666542
Q ss_pred HHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccc
Q psy6339 643 LGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASEL 721 (925)
Q Consensus 643 ~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA 721 (925)
.+|++|||+|||++||++++ .++.|+|+++.++++||||++ .+++|++++++||+.||++|++++||++.+++++||
T Consensus 452 -~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~-~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA 529 (594)
T PRK01584 452 -ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSH-PEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEA 529 (594)
T ss_pred -cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHH
Confidence 38999999999999999999 788899999999999999997 468999999999999999999999999999999999
Q ss_pred ccccccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEc
Q psy6339 722 PFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT 789 (925)
Q Consensus 722 ~~~~g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vt 789 (925)
++. +...+++++|++.+|||+||+ +|.++||||||.|||+||.|+|++++++++|+|||+|++
T Consensus 530 ~~~-~~~~lf~e~y~~~VRVV~Igd----~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 530 REK-GAMALFGEKYEDIVKVYEIDG----FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred Hhc-chhhhccccCCCcEEEEEECC----eeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 665 456677889999999999999 899999999999999999999999999999999999985
No 7
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=9.6e-184 Score=1663.56 Aligned_cols=649 Identities=24% Similarity=0.395 Sum_probs=579.7
Q ss_pred ccccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccccc-CCCCCCCCCccccccccccCCCCCC
Q psy6339 9 YVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCVRVGGKHND 87 (925)
Q Consensus 9 ~~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~fl-G~~~p~~~r~~~~QkCiR~gGKHnD 87 (925)
.+.||++|||++||+||+ ++||++||||||||+||++||||||||+||||+|+ |.++||++|+|+||||||+ ||
T Consensus 53 ~~~~~~~eiR~~fl~FF~-~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~----nD 127 (902)
T TIGR03683 53 SKKYTLDEMREAFLSFFE-KHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRL----ND 127 (902)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccccc----cc
Confidence 366999999999999999 69999999999999999999999999999999998 9999999999999999999 89
Q ss_pred CCCCCCCCCcchhhhhhcccccC-----cccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh
Q psy6339 88 LSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE 162 (925)
Q Consensus 88 ld~VG~t~rHhTfFeMLGn~SFg-----dYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~ 162 (925)
|||||+|+||||||||||||||| ||||+|||+|||||| + +||||++||
T Consensus 128 ldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~-~lgi~~~~i------------------------- 180 (902)
T TIGR03683 128 IDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-E-ELGIDPEEI------------------------- 180 (902)
T ss_pred cccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-H-HcCCCHHHe-------------------------
Confidence 99999999999999999999999 999999999999999 8 888877765
Q ss_pred cCCCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCC-------CCcc
Q psy6339 163 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVS-------ADTI 235 (925)
Q Consensus 163 ~Gv~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~-------~g~l 235 (925)
+ .+||||+|| ||||||||||| +| |||||||||||||++ ||+|
T Consensus 181 --------~---~~enfW~~G--GpcGPcsEi~~-~g-----------------lEiwnlVFmq~~~~~~~~~~~~~g~~ 229 (902)
T TIGR03683 181 --------T---YKESPWEGG--GNAGPCFEVIV-GG-----------------LELATLVFMQYEEDKEGEIEIKGGRY 229 (902)
T ss_pred --------e---ecCCccCCC--CCCCCceeeee-Cc-----------------EeeeeeeeeeeccccccccccCCCee
Confidence 2 279999999 99999999999 32 999999999999998 9999
Q ss_pred ccCCCCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCC-----------CCCCcccCCCCCC---------
Q psy6339 236 VPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK-----------PYGRTFTTSNRTD--------- 295 (925)
Q Consensus 236 ~~Lp~k~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~-----------~y~g~~~~~~~~~--------- 295 (925)
+|||+||||||||||||+|||||++||||| +|.|||+.|++++|++ +|+|.++.++...
T Consensus 230 ~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 308 (902)
T TIGR03683 230 SEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKVA 308 (902)
T ss_pred eeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhhhhh
Confidence 999999999999999999999999999999 9999999999999985 3556555332210
Q ss_pred ---------------CCceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHhhccccccchHHHHHHHH
Q psy6339 296 ---------------LDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIA 357 (925)
Q Consensus 296 ---------------~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~ 357 (925)
...++||||||+||++||||||++|||+ ||||||||||+|++++++... + |++||+.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~--~-l~~lv~~~~ 385 (902)
T TIGR03683 309 DKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLMRELGLDI--P-LSDLVEMQL 385 (902)
T ss_pred hhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHHHHhCCCc--c-HHHHHHHHH
Confidence 1158899999999999999999999999 599999999999998765444 6 999999999
Q ss_pred HHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhHHHHHHHHHhcCCCCCcC
Q psy6339 358 EILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEI 437 (925)
Q Consensus 358 ~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i 437 (925)
+.|++.||||.++++.|++||+.||++|.+|+ ++|.++|++.+++ ++.|
T Consensus 386 ~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl----------------------------~~G~~~~~~~~~~---~~~i 434 (902)
T TIGR03683 386 EELKKIYPELKENKDYILDILDLEEEKYRETL----------------------------ERGRRIVERLLKT---KKEI 434 (902)
T ss_pred HHHhhhChhHHHhHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHhc---CCcC
Confidence 99999999999999999999999999999884 5688999998875 2579
Q ss_pred ChhhhhHhhcccCCCHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHHhhhcCCCcccccccccCCCCcCCCCceeeeec
Q psy6339 438 SGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYD 516 (925)
Q Consensus 438 ~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~t~~~~k~~f~~~ 516 (925)
||++||+||||||||+|||++||+++|++||++ +|+++|++||++|+++... ...... ...++|+|+..+ |+
T Consensus 435 ~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~T~~l~-----y~ 507 (902)
T TIGR03683 435 PLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL-PKDYEE-RAKDLPETRRLF-----YE 507 (902)
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-ccchhH-HHhcCCCceEec-----cc
Confidence 999999999999999999999999999999998 9999999999998875321 111111 123456654322 22
Q ss_pred CCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhccccceEEEEeecceeeeCCCCCcccEEEEEcCCC
Q psy6339 517 TNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNT 596 (925)
Q Consensus 517 ~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~ 596 (925)
.. | ..+++|+|+++. ..+|+||+|+|||||||||+|+|+|..++
T Consensus 508 ~~---~-~~e~~a~Vl~i~-------------------------------~~~vvLd~T~FYpEgGGQ~~D~G~I~~~~- 551 (902)
T TIGR03683 508 DP---T-MREFEAKVLGVF-------------------------------DNYVVLDQTAFYPEGGGQPADTGYLITNG- 551 (902)
T ss_pred cC---c-cceEEEEEEEEE-------------------------------cCEEEEeCCCCCCCCCCCCCCEEEEEeCC-
Confidence 21 2 146889999886 12599999999999999999999998655
Q ss_pred ccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccC
Q psy6339 597 TQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFS 675 (925)
Q Consensus 597 ~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~ 675 (925)
..++|.+|++.+|.|+|.+.. +.+++|++|.++|||+||+++|++|||||||++||++++ .|++|+|+++++
T Consensus 552 ----~~~~V~dv~k~~g~i~H~~~~---~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~ 624 (902)
T TIGR03683 552 ----GKIRVVDVQKVGGVIVHKVDG---EGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDT 624 (902)
T ss_pred ----cEEEEEEEEEECCEEEEEeCC---CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccC
Confidence 368999999999999999862 347999999999999999999999999999999999999 899999999999
Q ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccccccc-CCcCCCcEEEEEeCCCCCccccc
Q psy6339 676 DECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIP-GEIYPDDVILIDISDKENVISRE 754 (925)
Q Consensus 676 d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~-geky~~~vRVV~Ig~~~~~~~~e 754 (925)
+++||||+++ +++|++++++||+.||++|++|+||++.+++++||++..++..++ +++|++.+|||+|++ +|.+
T Consensus 625 d~~r~Df~~~-~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~----~d~e 699 (902)
T TIGR03683 625 DKARLDITHY-KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIED----WDVQ 699 (902)
T ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECC----eeee
Confidence 9999999974 689999999999999999999999999999999998777765554 467788899999999 8999
Q ss_pred ccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhc
Q psy6339 755 PCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFS 810 (925)
Q Consensus 755 lCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~ 810 (925)
+||||||.|||+||.|+|++++++++|++||+++||.+|+++++..+++++++++.
T Consensus 700 ~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~ 755 (902)
T TIGR03683 700 ACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESSDI 755 (902)
T ss_pred CCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998853
No 8
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-183 Score=1657.57 Aligned_cols=649 Identities=24% Similarity=0.408 Sum_probs=579.9
Q ss_pred ccccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccccc-CCCCCCCCCccccccccccCCCCCC
Q psy6339 9 YVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCVRVGGKHND 87 (925)
Q Consensus 9 ~~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~fl-G~~~p~~~r~~~~QkCiR~gGKHnD 87 (925)
-+.||++|||++||+||+ ++||++||||||||+||++||||||||+||||+|+ |.++||++|+|+||||||+ ||
T Consensus 56 ~~~~~~~eiR~~Fl~FF~-~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~----nD 130 (900)
T PRK13902 56 SKKYTLKEMREKFLSFFE-KHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRL----ND 130 (900)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccch----hh
Confidence 366999999999999999 69999999999999999999999999999999998 9999999999999999999 89
Q ss_pred CCCCCCCCCcchhhhhhcccccC-----cccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh
Q psy6339 88 LSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE 162 (925)
Q Consensus 88 ld~VG~t~rHhTfFeMLGn~SFg-----dYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~ 162 (925)
|||||+|+||||||||||||||| ||||+|||+|||||||+ +|||||+||
T Consensus 131 ldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~-~lgi~~~~I------------------------- 184 (900)
T PRK13902 131 IDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTK-ELGIDPEEI------------------------- 184 (900)
T ss_pred hhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHh-hcCCCHHHe-------------------------
Confidence 99999999999999999999999 99999999999999999 888888665
Q ss_pred cCCCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCc
Q psy6339 163 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242 (925)
Q Consensus 163 ~Gv~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ 242 (925)
+ .+||||+|| ||||||||||| +| |||||||||||+|+ +|+|+|||+||
T Consensus 185 --------~---~~enfW~~G--GpcGPcsEi~~-~g-----------------lEiwnlVFmqy~~~-~g~~~~Lp~k~ 232 (900)
T PRK13902 185 --------T---FKESWWEGG--GNAGPCFEVLV-RG-----------------LELATLVFMQYKKD-GNRYVEMPLKI 232 (900)
T ss_pred --------e---ecccccCCC--CCCCCceeeee-CC-----------------EEeeeeeeeEEEcC-CCeeeeCCCCe
Confidence 2 279999999 99999999999 32 99999999999998 89999999999
Q ss_pred ccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCC-----------CCCCcccCCCCC-----------------
Q psy6339 243 IDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK-----------PYGRTFTTSNRT----------------- 294 (925)
Q Consensus 243 IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~-----------~y~g~~~~~~~~----------------- 294 (925)
||||||||||+|||||++||||| +|.|||+.|++++|++ +|+|.++.++..
T Consensus 233 VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (900)
T PRK13902 233 VDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDV 311 (900)
T ss_pred eeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcccch
Confidence 99999999999999999999999 9999999999999975 255555422111
Q ss_pred -------CCCceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccC
Q psy6339 295 -------DLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVY 364 (925)
Q Consensus 295 -------~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~y 364 (925)
....++||||||+||++|||+||++|||+ ||||||||||+|++++++... + |++||+.|++.|++.|
T Consensus 312 ~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~--~-l~~lv~~~~~~~~~~y 388 (900)
T PRK13902 312 EELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLDELGLDV--P-LSELVDMQIDELKEDY 388 (900)
T ss_pred hhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHhCCCc--c-HHHHHHHHHHHHhhhC
Confidence 01268999999999999999999999999 599999999999998765444 6 9999999999999999
Q ss_pred hhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhH
Q psy6339 365 PEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFT 444 (925)
Q Consensus 365 pel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~ 444 (925)
|||.++++.|++||..||++|.+|+ ++|.++|++.+++. +.|||++||+
T Consensus 389 pel~~~~~~I~~ii~~Ee~~f~~tl----------------------------~~G~~~~~~~~~~~---~~l~g~~~f~ 437 (900)
T PRK13902 389 PELKENRDYILDIVDLEEEKYRETL----------------------------ERGKRIVERLAKKK---EEIPLDDLIE 437 (900)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHhc---CCCCHHHHhh
Confidence 9999999999999999999999884 56888999988764 4699999999
Q ss_pred hhcccCCCHHHHHHHHHHcCCccCH-HHHHHHHHHHHHHHHhhhcCCCcccccccccCCCCcCCCCceeeeecCCCCccc
Q psy6339 445 LYDTYGLSKNIIQELAAAKKLTLCH-EAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYT 523 (925)
Q Consensus 445 LydTyGfP~dl~~~ia~e~g~~vd~-~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~ 523 (925)
||||||||+|||++||+++|++||+ ++|+++|++||++|+++..+ ..... ....++|+|+..+ |++. |
T Consensus 438 LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~T~~l~-----y~~~---~- 506 (900)
T PRK13902 438 LYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEE-PVVEE-ERLKDLPETEKLF-----YEDP---Y- 506 (900)
T ss_pred hhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhcccc-ccchh-hHhhcCCCceEec-----cccC---c-
Confidence 9999999999999999999999999 89999999999998874211 11111 1124566654322 2221 2
Q ss_pred cccccceEEEEEeCCeeeecccccccccccCCCCcchhccccceEEEEeecceeeeCCCCCcccEEEEEcCCCccccceE
Q psy6339 524 FPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKV 603 (925)
Q Consensus 524 ~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~ 603 (925)
..+++|+|++++. .+|+||+|+|||||||||+|+|+|..++ ..+
T Consensus 507 ~~~~~a~Vl~i~~-------------------------------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~-----~~~ 550 (900)
T PRK13902 507 MREFEAKVLGVID-------------------------------NYVVLDQTAFYPEGGGQPADTGVLIVDG-----KGY 550 (900)
T ss_pred cceEEEEEEEEEc-------------------------------CEEEEeCCCCCCCCCCCCCCEEEEEeCC-----cEE
Confidence 1467899998861 2699999999999999999999998655 478
Q ss_pred EEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEE
Q psy6339 604 EIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDF 682 (925)
Q Consensus 604 ~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df 682 (925)
+|.+|++.+|.|+|.+.. +.+.+|++|.++|||+||+++|++|||+|||++||++++ .|++|+|++++++++||||
T Consensus 551 ~V~dv~k~~g~i~H~~~~---~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df 627 (900)
T PRK13902 551 KVVDVQKVGGVIVHVLEG---EPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDI 627 (900)
T ss_pred EEEEEEEECCEEEEEeCC---CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEE
Confidence 999999999999999853 345569999999999999999999999999999999999 8999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccccccc-CCcCCCcEEEEEeCCCCCcccccccCCCCC
Q psy6339 683 SVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIP-GEIYPDDVILIDISDKENVISREPCCGTHV 761 (925)
Q Consensus 683 ~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~-geky~~~vRVV~Ig~~~~~~~~elCGGTHV 761 (925)
+++ +++|++++++||+.||++|++|+||++.+++++||.+..+++.++ +++|++.+|||+|++ +|.++||||||
T Consensus 628 ~~~-~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~----~d~e~CgGTHV 702 (900)
T PRK13902 628 THY-KRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGD----WDVEACGGTHV 702 (900)
T ss_pred eCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECC----eeeeCCCCCCc
Confidence 974 689999999999999999999999999999999998877776554 477888999999999 89999999999
Q ss_pred CCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhc
Q psy6339 762 FNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFS 810 (925)
Q Consensus 762 ~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~ 810 (925)
.|||+||.|+|++++++++|++||+++||.+|+++++..+++++++++.
T Consensus 703 ~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~ 751 (900)
T PRK13902 703 SNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELEDLLKEAAEI 751 (900)
T ss_pred CcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998853
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=2.7e-169 Score=1478.49 Aligned_cols=544 Identities=39% Similarity=0.661 Sum_probs=440.3
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCC-CCCCCCccccccccccCCCCCCCCCCCCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLT-PAPYPRVANSQKCVRVGGKHNDLSCAGRD 94 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~-~p~~~r~~~~QkCiR~gGKHnDld~VG~t 94 (925)
|||++||+||+ +|||++||||||||+||||||||||||+||||||+|.. +||++|+|+||||||+|||||||||||+|
T Consensus 1 eiR~~fl~fF~-~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t 79 (552)
T PF01411_consen 1 EIREKFLDFFE-KKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRT 79 (552)
T ss_dssp HHHHHHHHHHH-TTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTS
T ss_pred CHHHHHHHHHH-HCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCC
Confidence 79999999999 69999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhc-CCCCCccccc
Q psy6339 95 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLEL-GVPRDHIKKE 173 (925)
Q Consensus 95 ~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~-Gv~~~~I~~~ 173 (925)
+|||||||||||||||||||+|||+|||||||+ +|||||+|||||||.+ |+||++||+++ |+|++||++|
T Consensus 80 ~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~-~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i~~~ 150 (552)
T PF01411_consen 80 GRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTE-VLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERILVF 150 (552)
T ss_dssp SS--SEEEEEEEEEECSS-HHHHHHHHHHHHHC-TTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCEEEE
T ss_pred ceEeeehhhccccccccccHHHHHHHHHHHHHh-hcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHeEec
Confidence 999999999999999999999999999999999 9999999999999986 56999999987 7999999999
Q ss_pred CCccCcccCCCCCCCcCceEEEeecCCCCCC--cccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHH
Q psy6339 174 GMKCNFWEMGSTGPCGYSSEIHYDMKGEPSS--ALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER 251 (925)
Q Consensus 174 ~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~--~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLER 251 (925)
+.++|||+||++||||||||||||+|.++.+ ..+.++++++||+||||+|||||+|++||+++|||+++|||||||||
T Consensus 151 ~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler 230 (552)
T PF01411_consen 151 GKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLER 230 (552)
T ss_dssp -CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHH
T ss_pred CCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHH
Confidence 9999999999999999999999999988765 45568899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hhHHH
Q psy6339 252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRN 328 (925)
Q Consensus 252 l~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRr 328 (925)
++++|||++|||+||+|.||++.|++++++ +|.. ....++++||||||+||++|||+||++|||+ |||||
T Consensus 231 ~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~~------~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRr 303 (552)
T PF01411_consen 231 LAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYKD------EEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRR 303 (552)
T ss_dssp HCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TTS------SCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHH
T ss_pred HHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Cccc------ccccccEEEEEcchhhceeeEecCCeeecccCCcchHHH
Confidence 999999999999999999999999999998 5621 2446889999999999999999999999999 49999
Q ss_pred HHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhh
Q psy6339 329 VVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQ 408 (925)
Q Consensus 329 ilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~ 408 (925)
|||||+|++++++... +||++||+.|++.|++.||||.++++.|++||+.||++|.+|+
T Consensus 304 iiRRa~r~~~~lg~~~--~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL------------------- 362 (552)
T PF01411_consen 304 IIRRAVRFGRKLGIEE--PFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTL------------------- 362 (552)
T ss_dssp HHHHHHHHHHHTT-SS----HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhCCCc--cchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 9999999997765544 7999999999999999999999999999999999999999874
Q ss_pred hccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6339 409 FNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA 488 (925)
Q Consensus 409 ~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 488 (925)
++|+++|++.++++++++.|||++||+||||||||+|||++||+++|++||+++|+++|++||++||++++
T Consensus 363 ---------~~G~~~l~~~i~~~~~~~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~ 433 (552)
T PF01411_consen 363 ---------ERGLKLLEKLIKKLKKKKELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKK 433 (552)
T ss_dssp ---------HHHHHHHHHHHHHHHCCSEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH-
T ss_pred ---------HHHHHHHHHHHhhhccccCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccc
Confidence 56888899988875545899999999999999999999999999999999999999999999999987765
Q ss_pred CCC-cccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhccccce
Q psy6339 489 SNV-PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAW 567 (925)
Q Consensus 489 ~~~-~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 567 (925)
... ...+......++.+ ++|. +|+..+++|+|++|+.+++. +..+. +++ .
T Consensus 434 ~~~~~~~~~~~~~~l~~~-----teF~------gYe~~~~~akVlal~~~~~~-------~~~v~---~~~--------~ 484 (552)
T PF01411_consen 434 KKSSIEEDVSALAELPKT-----TEFV------GYEYLECEAKVLALFKDGEF-------VAKVE---EGE--------E 484 (552)
T ss_dssp -------SSSTTTTCHHH-----EETC------CCC------TT---TT--EE-------EEEEE---EEE--------T
T ss_pred cccchhhhHHHHhhhhcc-----cccc------eeecccccceEEEEEeCCEE-------Eeeec---CCc--------e
Confidence 421 11111112233332 4454 78888999999999876654 44433 233 5
Q ss_pred EEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhc
Q psy6339 568 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM 641 (925)
Q Consensus 568 ~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~r 641 (925)
..||||+|+|||||||||+|+|+|..++ ..+.|.+|++.+|+++|.+.... +.+++|+.|.++|||+|
T Consensus 485 ~~VVLD~T~FYpegGGQ~~D~G~I~~~~-----~~~~V~dv~k~~g~i~H~~~~~~-g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 485 GYVVLDKTPFYPEGGGQPGDTGTIIGDG-----GEFEVTDVQKVGGVILHIGEVES-GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp TEEEESEE-S--SBTTB----EEECCTT-----EEEEEEEEEEETTEEEEEESSG--GG--TTSEEEEEE-HHH
T ss_pred EEEEECCccccCCCCCCCCCeEEEeecc-----eEEEEEEEEEECCEEEEEEeccC-CCCCCCCEEEEEecCCC
Confidence 7899999999999999999999998766 58999999999999999998753 57999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=1.2e-107 Score=844.56 Aligned_cols=231 Identities=49% Similarity=0.881 Sum_probs=222.9
Q ss_pred HHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCCCC
Q psy6339 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGR 93 (925)
Q Consensus 14 ~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~VG~ 93 (925)
++|||++||+||+ +|||+++|||||||++|||||||||||+||||||+|+++||++|+|++|||||+ |||||||+
T Consensus 1 ~~eiR~~fl~FF~-~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~----~DienVG~ 75 (232)
T cd00673 1 ASEIRETFLSFFE-KKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA----GDIDNVGK 75 (232)
T ss_pred ChHHHHHHHHHHH-hCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCCCCceeeeeeceec----CChhhccc
Confidence 4799999999999 699999999999999999999999999999999999999999999999999999 79999999
Q ss_pred CCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCCcccc
Q psy6339 94 DSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKK 172 (925)
Q Consensus 94 t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~~I~~ 172 (925)
|+|||||||||||||||||||+|||+|||||||+ +|||||+|||||||+| |+||++||.+ +|||++||++
T Consensus 76 t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~-~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~i~~ 146 (232)
T cd00673 76 TGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTE-VLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIRIER 146 (232)
T ss_pred cccchhhhhhhcccchhhhhHHHHHHHHHHHHHh-hcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHHeee
Confidence 9999999999999999999999999999999999 9999999999999985 8999999975 8999999999
Q ss_pred cCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHHH
Q psy6339 173 EGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERL 252 (925)
Q Consensus 173 ~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLERl 252 (925)
++.+||||+||++||||||||||||+|+++++. ..+++|++|||||||||||||+|+++|+|.|||+||||||||||||
T Consensus 147 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~-~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERl 225 (232)
T cd00673 147 IGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAA-SLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERL 225 (232)
T ss_pred CCccCCCCCCCCCcCCCCCEEEEEccCCCcCcc-ccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHH
Confidence 999999999999999999999999999887654 3788999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy6339 253 VTILQNK 259 (925)
Q Consensus 253 ~~vlqg~ 259 (925)
||||||+
T Consensus 226 a~vlQg~ 232 (232)
T cd00673 226 VWVLQGV 232 (232)
T ss_pred HHHHcCC
Confidence 9999996
No 11
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.9e-45 Score=387.21 Aligned_cols=209 Identities=24% Similarity=0.356 Sum_probs=175.7
Q ss_pred eEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeec-----ccccCCCCeEEEEEchhc
Q psy6339 567 WVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVS-----SFKVTPGLTSRVEVDARM 641 (925)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~-----~~~l~~G~~V~~~VD~~r 641 (925)
.+.|+||+|+|||||||||+|+|+|...++ +..+.|.+|++.+|.++|++.... ...|.+|++|.++|||+|
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~---~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~r 78 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGG---DTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESR 78 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCC---CcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHH
Confidence 468999999999999999999999986432 136899999999999999986531 236899999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHh-h-cceeeccccccCCceEEEEecCCCCCCHHHH----HHHHHHHHHHHHccCCeeEEE
Q psy6339 642 RLGCMRAHTTSHLLNAALRRV-L-TCTYQKSCRVFSDECALDFSVYGETLSVDSV----AAVEKYINDVIANQVQVDRRH 715 (925)
Q Consensus 642 R~~~mr~HTAtHLL~aAL~~v-l-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel----~~IE~~vNe~I~~~~pV~~~~ 715 (925)
|+.+|++|||+|||++||+++ + ..+.|+|++ .+++.++||. ..++.+++ ++||+++|++|++++||++.+
T Consensus 79 R~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~-~~~~~~v~~~---~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~ 154 (223)
T PLN02961 79 RKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYH-FPDGPFVEYK---GKIPQGELDSKQDELEAEANELIAEGGKVSAAV 154 (223)
T ss_pred HhhhhccCcHHHHHHHHHHHcCCCccccccccc-cCCccceeec---ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEE
Confidence 999999999999999999997 5 455567766 5778899985 46776554 799999999999999999999
Q ss_pred cCccccccccccccccCCc-CCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEE
Q psy6339 716 MRASELPFLTHLTVIPGEI-YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 788 (925)
Q Consensus 716 ~~~eEA~~~~g~~~l~gek-y~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~v 788 (925)
++++||++..+. .++... ..+.+|||+|++ ++.+|||||||.||+|||.|+|++.+ +++|.+||+|.
T Consensus 155 ~~~~ea~~~~~~-~~~~~~~~~~~vRiV~I~~----~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~ 222 (223)
T PLN02961 155 LPYDEAAELCGG-SLPDYIAKDSTPRIVKIGD----SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT 222 (223)
T ss_pred eCHHHHHHhcCC-cCCCcCCCCCceEEEEECC----CccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence 999999765432 223211 145789999999 89999999999999999999999986 56899999984
No 12
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=3.7e-45 Score=385.42 Aligned_cols=211 Identities=27% Similarity=0.411 Sum_probs=191.8
Q ss_pred EEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHH
Q psy6339 569 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRA 648 (925)
Q Consensus 569 ~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~ 648 (925)
.|+||+|+|||+|||||+|+|+|.+.++ ...|.++.+.++.|+|++... ..+++|++|.++|||+||+++||+
T Consensus 26 ~i~ld~T~Fyp~~GGQp~D~G~l~~~~~-----~~~~~~~~~~~~~I~H~~~~~--~~~~vG~~V~~~IDW~rRy~~mr~ 98 (241)
T COG2872 26 EIVLDRTIFYPTGGGQPGDTGTLIWAGG-----EYVVEDVTKDGEEIVHVLAEH--AKLKVGDKVKLKIDWERRYRHMRM 98 (241)
T ss_pred eEEEEeccccCCCCCCcCCceEEEeCCc-----eEEEEEEEecceEEEEEecCc--ccCCCCCEEEEEECcHHHHHHHhh
Confidence 6999999999999999999999998874 678999998888999999863 468999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccccccc
Q psy6339 649 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLT 728 (925)
Q Consensus 649 HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~ 728 (925)
|||+|||++++.+.+. +.-.|.+++++++|+||+. +. +++.+.+++.++|++|.+|+||...+++++||.+.+++.
T Consensus 99 HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~--e~-~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~ 174 (241)
T COG2872 99 HTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDG--ED-TEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLV 174 (241)
T ss_pred hHHHHHHHHHhhcccc-ceeecceeccccccccccc--cc-chhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChh
Confidence 9999999999999985 3337999999999999985 33 889999999999999999999999999999999999887
Q ss_pred cccCCcCCC---cEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHH
Q psy6339 729 VIPGEIYPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSK 794 (925)
Q Consensus 729 ~l~geky~~---~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~ 794 (925)
.+....+|+ .+|+|+|++ ++++|||||||+||+|||.|+|++.++++++.+||++.+|++|.
T Consensus 175 ~~~~~~~~~~~g~iRiV~I~d----id~qpCgGtHVk~T~EIG~Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 175 KLKNKVPPDVEGKIRIVEIGD----IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred hhcccCCccccceEEEEEECC----eeccCCCCcccCCccceEEEEEEEEEEecCceEEEEEEeccccc
Confidence 776633332 568999999 99999999999999999999999999999999999999999875
No 13
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=9.7e-40 Score=339.03 Aligned_cols=115 Identities=43% Similarity=0.741 Sum_probs=105.6
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcce
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t 877 (925)
+..++.+.+ |.++ ++|+||++||+|+||||||+||||||+|..+||++|++++|||||+ ||++|||+|+||||
T Consensus 6 ~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~----~DienVG~t~rHhT 81 (232)
T cd00673 6 ETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA----GDIDNVGKTGRHHT 81 (232)
T ss_pred HHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCCCCceeeeeeceec----CChhhccccccchh
Confidence 344444443 5666 7888999999999999999999999999999999999999999999 69999999999999
Q ss_pred eeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 878 ~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
||||+||||||||||+|||+|||||||+ +||||++||||||-
T Consensus 82 fFEMLGNfSFgdYFK~eaI~~awe~LT~-~l~l~~~rl~vTv~ 123 (232)
T cd00673 82 FFEMLGNFSFGDYFKEEAIAFAWELLTE-VLGLPKDRLYVSVF 123 (232)
T ss_pred hhhhhcccchhhhhHHHHHHHHHHHHHh-hcCCCccceEEEEe
Confidence 9999999999999999999999999999 59999999999984
No 14
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=5.9e-39 Score=377.69 Aligned_cols=119 Identities=49% Similarity=0.791 Sum_probs=96.3
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCC-CCCCCCccccccceecccccCCcccccccCCcc
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLT-PAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~-~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~ 876 (925)
+.+++.+.+ |.++ ++|+||+|||+|+||||||+||||||+|.. .||++|++++|||||++|||||||+||.|+|||
T Consensus 4 ~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~rH~ 83 (552)
T PF01411_consen 4 EKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTGRHH 83 (552)
T ss_dssp HHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSSS--
T ss_pred HHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCceEe
Confidence 455666655 5666 788899999999999999999999999998 999999999999999999999999999999999
Q ss_pred eeeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 877 TFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 877 t~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|||||+||||||||||+|||.|||||||+ +|||||+||||||-
T Consensus 84 T~FEMlGn~sfgdYfK~eai~~awe~lt~-~l~i~~~~l~vt~~ 126 (552)
T PF01411_consen 84 TFFEMLGNFSFGDYFKEEAIEYAWEFLTE-VLGIPPDRLYVTVF 126 (552)
T ss_dssp SEEEEEEEEEECSS-HHHHHHHHHHHHHC-TTT--GGGEEEEEE
T ss_pred eehhhccccccccccHHHHHHHHHHHHHh-hcCCChHhEEEEEe
Confidence 99999999999999999999999999998 69999999999984
No 15
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=5.1e-39 Score=393.76 Aligned_cols=120 Identities=50% Similarity=0.863 Sum_probs=109.8
Q ss_pred HHHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCC-----CCCCccccccceecccccCCcccccc
Q psy6339 800 GKHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPA-----PYPRVANSQKCIRVGGKHNDLSFAGR 871 (925)
Q Consensus 800 ~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~-----~~~~~~~~q~ciR~~~k~~d~~~Vg~ 871 (925)
++.++..+.+ |.++ ++|+||+|||+||||||||+||||||||..+| ||+|++++|||||++||||||||||+
T Consensus 17 R~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnDlenVG~ 96 (936)
T PLN02900 17 RRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGK 96 (936)
T ss_pred HHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCCHhhccC
Confidence 3444555554 5666 78889999999999999999999999999888 78899999999999999999999999
Q ss_pred cCCcceeeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 872 DSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 872 ~~~h~t~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|+|||||||||||||||||||+|||.|||||||+ +|||||+||||||-
T Consensus 97 t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~-~l~i~~~~l~vTv~ 144 (936)
T PLN02900 97 DTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTK-VYGLPADRLYATYF 144 (936)
T ss_pred CCCchHHHHhhhccchhhhhHHHHHHHHHHHHHH-hcCCCHHHEEEEEe
Confidence 9999999999999999999999999999999999 59999999999974
No 16
>KOG0188|consensus
Probab=100.00 E-value=5.5e-39 Score=367.52 Aligned_cols=109 Identities=57% Similarity=0.986 Sum_probs=103.6
Q ss_pred cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcceeeeeecccccc
Q psy6339 810 SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN 888 (925)
Q Consensus 810 ~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~fem~g~~sf~ 888 (925)
|..+ ++|+||.+||+|+|+||||+||||.|||. ..+..|++++|||||++|||||+|.||++.||||||||+||||||
T Consensus 20 H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEMlGNWSFG 98 (895)
T KOG0188|consen 20 HKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEMLGNWSFG 98 (895)
T ss_pred ceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhhcCCCCcc
Confidence 5666 77789999999999999999999999988 467889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 889 DYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 889 ~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
||||+|||.|||||||+ +||||++||||||-
T Consensus 99 dYfK~Eac~~AwelLt~-vygi~~dRLYVtYF 129 (895)
T KOG0188|consen 99 DYFKEEACAWAWELLTF-VYGIPTDRLYVTYF 129 (895)
T ss_pred hHHHHHHHHHHHHHHHH-hhcCCCceEEEEEe
Confidence 99999999999999999 69999999999994
No 17
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-37 Score=371.30 Aligned_cols=116 Identities=42% Similarity=0.698 Sum_probs=106.9
Q ss_pred HHHHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCc
Q psy6339 799 NGKHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYH 875 (925)
Q Consensus 799 ~~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h 875 (925)
-++.++..+.+ |.++ ++|+||+|||+||||||||+||||||+|..+||++|++++|||||+ |||||||+|+||
T Consensus 11 iR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDieNVG~T~RH 86 (879)
T COG0013 11 IRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNVGYTARH 86 (879)
T ss_pred HHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeecccccccc----CchhhcCccccc
Confidence 34455555654 6777 7888999999999999999999999999988888899999999999 899999999999
Q ss_pred ceeeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEE
Q psy6339 876 HTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919 (925)
Q Consensus 876 ~t~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~ 919 (925)
||||||+||||||||||+|||.|||||||+ +|||||++|||||
T Consensus 87 hTfFEMLGNfSFGdYFKeeAI~~AwEflT~-~lgl~~ekL~vtv 129 (879)
T COG0013 87 HTFFEMLGNFSFGDYFKEEAIEFAWEFLTK-VLGLPKEKLYVTV 129 (879)
T ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHHHHh-hcCCCHHHEEEEE
Confidence 999999999999999999999999999998 7999999999996
No 18
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=5.5e-37 Score=374.95 Aligned_cols=115 Identities=41% Similarity=0.719 Sum_probs=106.7
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcce
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t 877 (925)
+.+++.+.+ |.++ ++|+||+|||+||||||||+||||||||...||++|++++|||||+ |||||||+|+||||
T Consensus 4 ~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----nDld~VG~t~rHhT 79 (851)
T TIGR00344 4 QTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRL----NDIENVGRTARHHT 79 (851)
T ss_pred HHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhhhcCCCcchh
Confidence 445555554 5666 7888999999999999999999999999999999999999999999 89999999999999
Q ss_pred eeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 878 ~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|||||||||||||||+|||.|||||||+ +|||||+||||||-
T Consensus 80 fFEMlGnfSFgdYfK~eai~~awe~lT~-~~~i~~~rl~vTv~ 121 (851)
T TIGR00344 80 FFEMLGNFSFGDYFKEEAIAFAWELLTS-VLGLDKERLYVTVY 121 (851)
T ss_pred hHHhhcccchhhhhHHHHHHHHHHHHhh-hcCCChHHEEEEEc
Confidence 9999999999999999999999999999 59999999999983
No 19
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=373.31 Aligned_cols=114 Identities=45% Similarity=0.775 Sum_probs=105.7
Q ss_pred HHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCccee
Q psy6339 802 HLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTF 878 (925)
Q Consensus 802 eIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~ 878 (925)
..+..+.+ |..+ ++|+||+|||+||||||||+||||||+|..+||++|++++|||||+ |||||||+|+|||||
T Consensus 10 ~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDld~VG~t~rHhTf 85 (865)
T PRK00252 10 KFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT----NDLENVGYTARHHTF 85 (865)
T ss_pred HHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhhccCCCCchHH
Confidence 34444443 5666 7888999999999999999999999999999999999999999999 899999999999999
Q ss_pred eeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 879 FEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 879 fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
||||||||||||||+|||+|||||||+ +|||||+||||||-
T Consensus 86 FEMlGn~sfgdYfK~eai~~awe~lt~-~~~i~~~~l~vt~~ 126 (865)
T PRK00252 86 FEMLGNFSFGDYFKEEAIEWAWELLTS-VLGLPKEKLYVTVY 126 (865)
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHH-HhCCCHHHEEEEEc
Confidence 999999999999999999999999999 69999999999984
No 20
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-36 Score=353.14 Aligned_cols=115 Identities=35% Similarity=0.607 Sum_probs=104.8
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcce
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t 877 (925)
+..++.+.+ |..+ ++|+||+|||+||||||||+||||||+|..+||++|++++|||||+ ||||+|| |+||||
T Consensus 8 ~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----~Dle~VG-~~rHhT 82 (594)
T PRK01584 8 KKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRT----GDIDEVG-DLSHLT 82 (594)
T ss_pred HHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----ccccccC-CCcchh
Confidence 444555544 5666 7888999999999999999999999999999999999999999999 6999999 799999
Q ss_pred eeeeecccccccchHHHHHHHHHHhhccC-CCCCCCCcEEEEEe
Q psy6339 878 FFEMLGNWSFNDYYKRDACRMALEFLTKP-PVSLPLDRLYFTFP 920 (925)
Q Consensus 878 ~fem~g~~sf~~y~k~~~i~~~~~~lt~~-~~~~~~~~~~~t~~ 920 (925)
|||||||||||||||+|||+|||||||++ +|||||+||||||-
T Consensus 83 fFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~ 126 (594)
T PRK01584 83 FFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVF 126 (594)
T ss_pred HHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEe
Confidence 99999999999999999999999999982 39999999999985
No 21
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.1e-32 Score=338.01 Aligned_cols=142 Identities=23% Similarity=0.384 Sum_probs=120.7
Q ss_pred cccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhh--cccc-ccCCCCCCCCceEEE
Q psy6339 752 SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASF--SQIL-NVGNIPYGDDSIAFV 828 (925)
Q Consensus 752 ~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~ 828 (925)
+.+.||-+-+..-+.||.= + .. .....-+-++.+++.+.+ |..+ ++|+||+|+++||||
T Consensus 35 ~r~~cgd~pc~~y~fi~~~-~-----~~------------~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft 96 (900)
T PRK13902 35 DRETCGDAPCDEYSFIGNP-I-----FS------------KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLT 96 (900)
T ss_pred CcCCCCCCCCccceecCCC-C-----cC------------CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeee
Confidence 6788998777777777752 1 11 012233445556666665 5666 888999999999999
Q ss_pred cccccceeeecc-CCCCCCCCCccccccceecccccCCcccccccCCcceeeeeecccccc-----cchHHHHHHHHHHh
Q psy6339 829 NSGMCQFKNVFL-GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEF 902 (925)
Q Consensus 829 ~Agm~~~~~~~l-~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~fem~g~~sf~-----~y~k~~~i~~~~~~ 902 (925)
||||+||||||+ |..+||++|++++|||||+ |||||||+|+||||||||+|||||| ||||+|||+|||||
T Consensus 97 ~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~ 172 (900)
T PRK13902 97 IASIYDFQPWVTSGLVPPPANPLVISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEF 172 (900)
T ss_pred ecchhhhhHHhcCCCCCCCCCCceecccccch----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHH
Confidence 999999999998 9999999999999999999 7999999999999999999999999 99999999999999
Q ss_pred hccCCCCCCCCcEE
Q psy6339 903 LTKPPVSLPLDRLY 916 (925)
Q Consensus 903 lt~~~~~~~~~~~~ 916 (925)
||+ +|||||+||.
T Consensus 173 lt~-~lgi~~~~I~ 185 (900)
T PRK13902 173 FTK-ELGIDPEEIT 185 (900)
T ss_pred HHh-hcCCCHHHee
Confidence 999 5999999985
No 22
>KOG2105|consensus
Probab=99.97 E-value=1.8e-30 Score=271.61 Aligned_cols=216 Identities=23% Similarity=0.379 Sum_probs=176.0
Q ss_pred eEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHH
Q psy6339 567 WVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 646 (925)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~m 646 (925)
.+.+.|.+|++||||||||+|.|++. .+.|..|.+.+...-|.+. .++.+|.+|.+.|||+||+++|
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~---------~v~V~~VsR~G~~A~H~~~----~~iePGt~V~V~VD~qkR~D~M 109 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLK---------IVEVSHVSRFGLHAKHHVN----DYIEPGTTVEVAVDEQKRMDYM 109 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccc---------ceeEEEeeccccchhhccC----CCCCCCCeEEEEecHHHHhHHH
Confidence 46899999999999999999999996 3568888887766667765 4789999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccc
Q psy6339 647 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT 725 (925)
Q Consensus 647 r~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~ 725 (925)
++||++|||.+++.+.| -.+. +..++--...+..+. +++|.|++..||+.+|+.|..-+||.+.+.+.++- ..
T Consensus 110 QQHsGQHLitAvad~~fKlkTt--SWelG~~~sa~e~~~--~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~-eV- 183 (415)
T KOG2105|consen 110 QQHSGQHLITAVADHLFKLKTT--SWELGRFRSAIELDT--PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDP-EV- 183 (415)
T ss_pred HHhcchhHHHHHHHhhhcccee--eeeccceeeccccCC--CCccHHHHHHHHHHHHHHHHhccchheeecccCCc-ch-
Confidence 99999999999999998 4442 333333333455543 57999999999999999999999999998877652 11
Q ss_pred ccccccCCcCCC----cEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHH
Q psy6339 726 HLTVIPGEIYPD----DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGK 801 (925)
Q Consensus 726 g~~~l~geky~~----~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~e 801 (925)
...-+...|| ..|+|.|++ +|.++||||||+||++|+.|+|++.++-.+|..-..+.+|.+..+|++...
T Consensus 184 --eqVS~~~~~D~haG~iRvvnI~~----vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mersh 257 (415)
T KOG2105|consen 184 --EQVSGRGLPDDHAGPIRVVNIEG----VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSH 257 (415)
T ss_pred --hhccCCCCcccccCceEEEeecC----ccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHhc
Confidence 1122222332 568999999 999999999999999999999999999888877777888999999998776
Q ss_pred HHHHhh
Q psy6339 802 HLSTAA 807 (925)
Q Consensus 802 eIL~el 807 (925)
.+...+
T Consensus 258 ~t~~a~ 263 (415)
T KOG2105|consen 258 GTEKAL 263 (415)
T ss_pred chHHHH
Confidence 665543
No 23
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.97 E-value=5e-32 Score=332.34 Aligned_cols=141 Identities=23% Similarity=0.368 Sum_probs=118.4
Q ss_pred cccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhh--cccc-ccCCCCCCCCceEEE
Q psy6339 752 SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASF--SQIL-NVGNIPYGDDSIAFV 828 (925)
Q Consensus 752 ~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~ 828 (925)
+.+.||-+-+..-+.||.= +.. .....-+-++.+++.+.+ |..+ ++|+||+|+++||||
T Consensus 32 ~r~~cgd~~c~~y~fi~~~-~~~-----------------~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft 93 (902)
T TIGR03683 32 ERETCGDAPCDEYSFIGNP-IFS-----------------KKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLT 93 (902)
T ss_pred CcCCCCCCCCccceecCCC-CcC-----------------CCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEe
Confidence 6778888777666777751 100 112233344556666654 5666 888899999999999
Q ss_pred cccccceeeecc-CCCCCCCCCccccccceecccccCCcccccccCCcceeeeeecccccc-----cchHHHHHHHHHHh
Q psy6339 829 NSGMCQFKNVFL-GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEF 902 (925)
Q Consensus 829 ~Agm~~~~~~~l-~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~fem~g~~sf~-----~y~k~~~i~~~~~~ 902 (925)
||||+||||||+ |..+||++|++++|||||+ |||||||+|+||||||||+|||||| ||||+|||+|||||
T Consensus 94 ~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~ 169 (902)
T TIGR03683 94 IASIADFQPWVTSGLVPPPANPLVISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEF 169 (902)
T ss_pred ecchhhhhHhhcCCCCCCCCCCceeccccccc----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHH
Confidence 999999999998 9999999999999999999 7999999999999999999999999 99999999999999
Q ss_pred hccCCCCCCCCcEE
Q psy6339 903 LTKPPVSLPLDRLY 916 (925)
Q Consensus 903 lt~~~~~~~~~~~~ 916 (925)
| + +||||++||.
T Consensus 170 l-~-~lgi~~~~i~ 181 (902)
T TIGR03683 170 L-E-ELGIDPEEIT 181 (902)
T ss_pred H-H-HcCCCHHHee
Confidence 9 7 5999999985
No 24
>PLN02837 threonine-tRNA ligase
Probab=99.92 E-value=3.2e-25 Score=265.51 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=204.3
Q ss_pred CCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhhc-ceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHcc
Q psy6339 630 GLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708 (925)
Q Consensus 630 G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl~-~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~ 708 (925)
-..|.+.+|...|...+.+|||+|||++|++++++ ...+.|+. .++++|+||+. .++|++++.+||+.||++|.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~-~~~g~y~D~~~--~~lt~edl~~IEk~m~~iI~~n 105 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPW-IENGFYYDFDM--EPLTDKDLKRIKKEMDRIISRN 105 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cCCCEEEEecC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999999999999994 43445554 56899999984 5899999999999999999999
Q ss_pred CCeeEEEcCccccccccccc------cccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCc--ccEEEEeeee---
Q psy6339 709 VQVDRRHMRASELPFLTHLT------VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHI--ESCTVIGYKS--- 777 (925)
Q Consensus 709 ~pV~~~~~~~eEA~~~~g~~------~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeI--G~fkI~~~~~--- 777 (925)
+||+..+++++||.+.+.-. .+......+.+|||+||+ ...++|+||||+|||+| +.|+|+++++
T Consensus 106 ~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~----~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~yw 181 (614)
T PLN02837 106 LPLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGE----EWWDLCAGPHVERTGKINKKAVELESVAGAYW 181 (614)
T ss_pred CCEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECC----eEEEecCCCCcccccccccceEEEEEeehhhh
Confidence 99999999999997653110 000011123578999997 46889999999999999 9999999988
Q ss_pred ----cCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCcccc
Q psy6339 778 ----YNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANS 853 (925)
Q Consensus 778 ----~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~ 853 (925)
.+..++||++++.+. .+.++...+.++++.+.+++.. +. +.+||.++....|+-|||+|.++..+ ..+
T Consensus 182 rg~~~~~~l~ri~g~~~~~-~~~l~~~~~~~~e~~~rdH~~l---g~-~l~lf~~~~~~g~G~~~~~p~G~~l~---~~L 253 (614)
T PLN02837 182 RGDEKNQMLQRIYGTAWES-EEQLKAYLHFKEEAKRRDHRRL---GQ-DLDLFSIQDDAGGGLVFWHPKGAIVR---HII 253 (614)
T ss_pred cccccCcceEEEEEEecCC-HHHHHHHHHHHHHhhhCCHHHH---HH-HcCCcccCcCcCCcceEEechHHHHH---HHH
Confidence 367899999999999 8888999999999988766654 43 66789888777899999999999887 667
Q ss_pred ccceecccccCCcccccc-cCCcceeeeeeccccc
Q psy6339 854 QKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWSF 887 (925)
Q Consensus 854 q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~sf 887 (925)
+..+|.....+++++|.+ +..+..+|+.+|||.+
T Consensus 254 ~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~ 288 (614)
T PLN02837 254 EDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDF 288 (614)
T ss_pred HHHHHHHHHHCCCEEEECCccCCHHHHhhcCCccc
Confidence 778888887789999999 8999999999999986
No 25
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=5.8e-24 Score=253.95 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=186.9
Q ss_pred HHHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccc
Q psy6339 645 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFL 724 (925)
Q Consensus 645 ~mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~ 724 (925)
.+.+|||+|||++|++++++.....+++..++++|+||+. ++++|++++.+||+.||++|+++.||+...++++||.+.
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~-~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDV-PEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 4679999999999999999544445666678999999995 468999999999999999999999999999999999776
Q ss_pred cccc----cccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeee-------cCCCeEEEEEEcchhH
Q psy6339 725 THLT----VIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGDSS 793 (925)
Q Consensus 725 ~g~~----~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~-------~~~GvrRI~~vtG~~A 793 (925)
+.-. .++....++.+|||+||+ + .++|+||||+|||+||.|+|++.++ .+++++||++++.+.
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~----~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~- 159 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD----F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWET- 159 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC----E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCC-
Confidence 5321 111222234689999998 3 5899999999999999999999955 478999999999888
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-c
Q psy6339 794 KAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-D 872 (925)
Q Consensus 794 ~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~ 872 (925)
.+.++...+.++++.+.++... .+ ...||.++.--.++.++|+|.+...+ ..++..+|...+..++++|-+ .
T Consensus 160 ~~~l~~~~~~~~e~~~~dh~~l---~~-~~~l~~~~~~~~~G~~~~~p~~~~~~---~~l~~~~~~~~~~~Gy~ev~tP~ 232 (575)
T PRK12305 160 KEELKEYLKRLEEAKKRDHRKL---GK-ELDLFSFPDEIGPGLPVWHPKGAIIR---REIEDYLRKEHLKRGYEFVYTPH 232 (575)
T ss_pred HHHHHHHHHHHHHhhhccHHHH---HH-hcCccccccccCCcceEEeccHHHHH---HHHHHHHHHHHHHcCCEEEECCc
Confidence 7778888888888876544432 22 44677776545788899999988877 677888888888899999999 8
Q ss_pred CCcceeeeeeccccc
Q psy6339 873 SYHHTFFEMLGNWSF 887 (925)
Q Consensus 873 ~~h~t~fem~g~~sf 887 (925)
..+..+|+-+|||..
T Consensus 233 le~~~l~~~sg~~~~ 247 (575)
T PRK12305 233 IGKSDLWKTSGHLDN 247 (575)
T ss_pred cCCHHHHhhcCCccc
Confidence 999999999999764
No 26
>PLN02908 threonyl-tRNA synthetase
Probab=99.87 E-value=2.2e-22 Score=244.04 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=191.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhh-cceeeccccccC-CceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcc
Q psy6339 642 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFS-DECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRAS 719 (925)
Q Consensus 642 R~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~-d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~e 719 (925)
--.-+.+||++|||.+|+++++ ..+. .|.++.+ +++|+|+...+.++|++++.+||+.||++|.+++||+...++++
T Consensus 117 eg~~~y~hS~ahlL~~A~~~~~~~~l~-ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~e 195 (686)
T PLN02908 117 EGRDTFWHSSAHILGEALELEYGCKLC-IGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTRE 195 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEE-ecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHH
Confidence 3456789999999999999998 4444 5666654 88899987423579999999999999999999999999999999
Q ss_pred ccccccccc----cccCCcCC--CcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeec-------CCCeEEEE
Q psy6339 720 ELPFLTHLT----VIPGEIYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIK 786 (925)
Q Consensus 720 EA~~~~g~~----~l~geky~--~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~-------~~GvrRI~ 786 (925)
||.+++.-. .+.. ..+ +.++|++||+ ..++|.||||+|||.|+.|+|++.++. +..++||+
T Consensus 196 eA~e~F~~~~~K~~ll~-~~~~~~~v~vY~~g~-----~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~ 269 (686)
T PLN02908 196 EALEMFSENKFKVEIIN-DLPEDATITVYRCGP-----LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVY 269 (686)
T ss_pred HHHHHHhhCCcHHHHHh-hCCCCCeeEEEEECC-----EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEe
Confidence 998755311 1111 123 2467999998 678899999999999999999999853 56899999
Q ss_pred EEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCc
Q psy6339 787 CLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDL 866 (925)
Q Consensus 787 ~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~ 866 (925)
+++.+. .+.+..+.+.++++.+.+++.. .. +.+||+++.. +|+.++|+|.++..+ +.++..+|..++.+++
T Consensus 270 G~sfp~-~~~l~~~~~~~~e~~~rdH~~l---g~-~~~lf~~~~~-~~G~~~~lP~g~~i~---~~l~~~~~~~~~~~G~ 340 (686)
T PLN02908 270 GISFPD-KKLLKEYKHRIEEAKKRDHRLL---GQ-KQELFFFHEL-SPGSCFFLPHGARIY---NKLMDFIREQYWERGY 340 (686)
T ss_pred eeccCC-hHHHHHHHhhhhhccccCHHHH---HH-hcCCeeecCC-CCcceEEechHHHHH---HHHHHHHHHHHHHcCC
Confidence 999999 6788899999999987655643 43 6789999954 799999999999988 8899999999999999
Q ss_pred ccccc-cCCcceeeeeecccc
Q psy6339 867 SFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 867 ~~Vg~-~~~h~t~fem~g~~s 886 (925)
++|.+ +..+..+|+.+|||.
T Consensus 341 ~ev~tP~l~~~~l~~~sGh~~ 361 (686)
T PLN02908 341 DEVITPNIYNMDLWETSGHAA 361 (686)
T ss_pred EEEECCccccHHHHhhcCCcc
Confidence 99999 899999999999995
No 27
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=5.5e-22 Score=239.74 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=197.9
Q ss_pred ccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy6339 626 KVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 705 (925)
Q Consensus 626 ~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I 705 (925)
.+..+..|+..-....+-..+.+|||+|||++|++++++.....+++..++++|+||+. +.+++++++.+||+.||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~-~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDR-ERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeC-CCCCCHHHHHHHHHHHHHHH
Confidence 45667788888778888888999999999999999999544445566678999999985 46899999999999999999
Q ss_pred HccCCeeEEEcCcccccccccccccc------CCcCC-CcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeee-
Q psy6339 706 ANQVQVDRRHMRASELPFLTHLTVIP------GEIYP-DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS- 777 (925)
Q Consensus 706 ~~~~pV~~~~~~~eEA~~~~g~~~l~------geky~-~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~- 777 (925)
++|+||+...++++||.+.+.-...+ ..... +.++|++|++ ..++|+||||+|||+||.|+|++.++
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~-----~~d~c~G~hv~~Tg~i~~f~i~~~~~g 203 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE-----FVDLCRGPHVPSTGKIKAFKLLKVAGA 203 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC-----EEEECCCCCCCcccCCceeEEEEEcce
Confidence 99999999999999998754321111 11112 2578999998 46899999999999999999999965
Q ss_pred ------cCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCcc
Q psy6339 778 ------YNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 851 (925)
Q Consensus 778 ------~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~ 851 (925)
.+++++||++++.+. .+.+....+.++++....+.. +.. ..++++++. ..++.++|+|.+...+ .
T Consensus 204 ~~l~~~~~~~l~Ri~g~~~~~-~~~l~~~~~~~~e~~~~~h~~---l~~-~~~~~~~~~-~~~G~~~~lp~~~~~~---~ 274 (638)
T PRK00413 204 YWRGDSKNKMLQRIYGTAFAD-KKELDAYLHRLEEAKKRDHRK---LGK-ELDLFHFQE-EAPGLPFWHPKGWTIR---R 274 (638)
T ss_pred EEcCCCcchheEEEEeeecCC-HHHHHHHHHHHHHhccccHHH---HHH-hcCEEEecC-CCCcceEEcccHHHHH---H
Confidence 378999999999888 577778888888877542222 232 456888884 4499999999988777 6
Q ss_pred ccccceecccccCCcccccc-cCCcceeeeeecccc
Q psy6339 852 NSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 852 ~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~s 886 (925)
.++.-+|...+..++++|-+ ...+..+|..+|||.
T Consensus 275 ~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~ 310 (638)
T PRK00413 275 ELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWD 310 (638)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChh
Confidence 67777777777789999999 789999999999974
No 28
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=3.6e-21 Score=232.52 Aligned_cols=229 Identities=14% Similarity=0.190 Sum_probs=185.6
Q ss_pred HHHHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccc
Q psy6339 644 GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPF 723 (925)
Q Consensus 644 ~~mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~ 723 (925)
...-+||++|||++|++++++.......+..++++|+||+. +.++|++++.+||+.||++|.+++||+...++++||.+
T Consensus 72 ~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~-~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~ 150 (639)
T PRK12444 72 VEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDL-PSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAK 150 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 35679999999999999999543323344468999999985 46899999999999999999999999999999999987
Q ss_pred ccccc------cccCCcCC-CcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeec-------CCCeEEEEEEc
Q psy6339 724 LTHLT------VIPGEIYP-DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT 789 (925)
Q Consensus 724 ~~g~~------~l~geky~-~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~-------~~GvrRI~~vt 789 (925)
.+.-. .+...... +.++|++|++ ..+.|+||||+|||+|+.|+|++.++. +++++||+++|
T Consensus 151 ~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a 225 (639)
T PRK12444 151 LFQEMNDRLKLELLEAIPSGESITLYKQGE-----FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA 225 (639)
T ss_pred HHhhcCCchHHHHHhcCCCCCeEEEEEECC-----EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe
Confidence 65321 01111111 3478999998 678899999999999999999999875 78999999999
Q ss_pred chhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccc
Q psy6339 790 GDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFA 869 (925)
Q Consensus 790 G~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~V 869 (925)
.+. .+.++...+.++++.+..+... .+ ..+||.+.. -.++.++|+|.+...+ ..++..+|...+..++++|
T Consensus 226 ~~~-~~~l~~~~~~~~~~~~~dH~~l---~~-~~~l~~~~~-~~~G~~~~~p~g~~~~---~~i~~~~~~~~~~~G~~~v 296 (639)
T PRK12444 226 FSS-QKELEEYLHFVEEAAKRNHRKL---GK-ELELFMFSE-EAPGMPFYLPKGQIIR---NELEAFLREIQKEYNYQEV 296 (639)
T ss_pred cCC-HHHHHHHHHHHHHhccCCHHHH---HH-HcCCccccc-ccCcceEEeeCHHHHH---HHHHHHHHHHHHHcCCEEE
Confidence 887 7888888888988886544432 32 446777775 4788999999987777 5588888888888999999
Q ss_pred cc-cCCcceeeeeeccccc
Q psy6339 870 GR-DSYHHTFFEMLGNWSF 887 (925)
Q Consensus 870 g~-~~~h~t~fem~g~~sf 887 (925)
-+ ...+..+|+-+|||..
T Consensus 297 ~tP~l~~~~l~~~sG~~~~ 315 (639)
T PRK12444 297 RTPFMMNQELWERSGHWDH 315 (639)
T ss_pred ECCccCCHHHHhhcCChhh
Confidence 99 7999999999999863
No 29
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.79 E-value=7.3e-20 Score=218.30 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=181.4
Q ss_pred HhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccccc
Q psy6339 648 AHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTH 726 (925)
Q Consensus 648 ~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g 726 (925)
+|||+|||++|+++++ ....+.|+.+ ++++|+||+. ..++|++++.+||+.||++|.++.||....++++||.+.+.
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~-~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~ 78 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFEL-DRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK 78 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh
Confidence 6999999999999999 4445667666 6779999985 46899999999999999999999999999999999977653
Q ss_pred c-----ccccCCc-CCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeec-------CCCeEEEEEEcchhH
Q psy6339 727 L-----TVIPGEI-YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGDSS 793 (925)
Q Consensus 727 ~-----~~l~gek-y~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~-------~~GvrRI~~vtG~~A 793 (925)
. ..++.+. +.+.++|+++|+ ++.+.|+||||+|||.|+.|+|++.+.. ++.++||++++.+.
T Consensus 79 ~~~~~k~~Ll~~~~~~~~v~vy~~g~----~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~- 153 (563)
T TIGR00418 79 VLEPYKLELLDEIPNGVKRTPYGWGK----AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWAD- 153 (563)
T ss_pred ccChhHHHHHhcCCCCCeEEEEEeCC----EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCC-
Confidence 0 0111111 335678999998 7899999999999999999999988763 57899999999888
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-c
Q psy6339 794 KAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-D 872 (925)
Q Consensus 794 ~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~ 872 (925)
.+.+++....+++.....++.. .. +.+|+.+..+-.++-++|+|.+...+ ..++.-+|...+..++.+|-+ .
T Consensus 154 ~~~l~~~~~~~~~~~~~dH~~l---~~-~~~l~~~~~~~~~G~~~~~p~g~~~~---~~i~~~~~~~~~~~G~~ev~tP~ 226 (563)
T TIGR00418 154 KKQLAAYLLRLEEAKKRDHRKL---GK-ELELFSFEPEIGPGLPFWLPKGATIR---NLLEDFVRQKQIKYGYMEVETPI 226 (563)
T ss_pred HHHHHHHHHhhhhhhcCCHHHH---HH-hCCCcccCcccCCcceEEeccHHHHH---HHHHHHHHHHHHHcCCEEEECCc
Confidence 7888888888888876544432 22 44566666445777888998887776 566777777777789999999 7
Q ss_pred CCcceeeeeeccccc
Q psy6339 873 SYHHTFFEMLGNWSF 887 (925)
Q Consensus 873 ~~h~t~fem~g~~sf 887 (925)
.-+..+|+-+|||..
T Consensus 227 l~~~~l~~~sg~~~~ 241 (563)
T TIGR00418 227 MYDLELWEISGHWDN 241 (563)
T ss_pred cCCHHHHHhcCCccc
Confidence 889999999999964
No 30
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.3e-18 Score=204.43 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=186.5
Q ss_pred HHHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccc
Q psy6339 645 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFL 724 (925)
Q Consensus 645 ~mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~ 724 (925)
-.-+||++|||..|+.++++.+ ..| .+.++++++||+. ..++|++++.+||+.+++++.++++|....+++++|++.
T Consensus 27 ~~~rhs~ah~l~~av~~l~p~~-~~g-p~ie~gfyyd~~~-~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~ 103 (589)
T COG0441 27 EIIRHSCAHVLAQAVKRLYPDV-TIG-PVIEEGFYYDFDV-KEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAP 103 (589)
T ss_pred hhhhhHHHHHHHHHHHHhCCCc-ccc-CcccceeEEeecc-CCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHH
Confidence 4468999999999999999553 356 6789999999996 456999999999999999999999999999999999776
Q ss_pred cccccccC---CcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeee-------cCCCeEEEEEEcchhHH
Q psy6339 725 THLTVIPG---EIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGDSSK 794 (925)
Q Consensus 725 ~g~~~l~g---eky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~-------~~~GvrRI~~vtG~~A~ 794 (925)
++- +.- +..+..+.+++-|. ..++|-|+||++||.| .|++++.++ .++.++||++++. ...
T Consensus 104 f~~--yK~~~i~~~~~~~s~y~~~~-----~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~-~~~ 174 (589)
T COG0441 104 FGP--YKAELIDCKGHPLSEYSQGE-----FVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF-ADK 174 (589)
T ss_pred hhh--hHHHHHhcCCCCceeEecCc-----cccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc-CCH
Confidence 541 100 11123445777666 7899999999999999 999999985 4788999999998 558
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cC
Q psy6339 795 AAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DS 873 (925)
Q Consensus 795 ~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~ 873 (925)
+.+......+.+..+.++++. ++ ..+||.++-...|+.|+|+|.+.+.+ +.+.+.+|......++.+|.+ -+
T Consensus 175 ~~l~~~l~~~eea~krdHrkl---g~-el~LF~~~~~~~~G~~~~~pkG~~ir---~~le~y~~~~~~~~Gy~~V~TP~~ 247 (589)
T COG0441 175 KELEAYLKRLEEAKKRDHRKL---GK-ELDLFSFSPEEGPGLPFWHPKGATIR---NLLEDYVRTKLRSYGYQEVKTPVL 247 (589)
T ss_pred HHHHHHHhhhhhccCCchHhH---HH-hhcceeeccccCCcceEECCCcccHH---HHHHHHHHHHHHhcCceEecCCee
Confidence 888888888877777666665 43 56788887789999999999999998 788889999888899999998 69
Q ss_pred Ccceeeeeecccc
Q psy6339 874 YHHTFFEMLGNWS 886 (925)
Q Consensus 874 ~h~t~fem~g~~s 886 (925)
.+..+|+.+|||.
T Consensus 248 ~~~~l~~~SGH~~ 260 (589)
T COG0441 248 ADLELWELSGHWD 260 (589)
T ss_pred eecccchhccchh
Confidence 9999999999999
No 31
>KOG1637|consensus
Probab=99.71 E-value=1.6e-18 Score=192.45 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=133.7
Q ss_pred HHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccc
Q psy6339 647 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT 725 (925)
Q Consensus 647 r~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~ 725 (925)
.|||++|+|..|+++.+ .+++ .|.. .++++++|+ + + .++.+++..
T Consensus 69 fwhssahvlg~a~e~~~g~~lc-~Gpp-~~~gf~yd~-~-~-~i~~~d~~~----------------------------- 114 (560)
T KOG1637|consen 69 FWHSSAHVLGEALEQEYGAHLC-IGPP-IEEGFYYDM-L-D-EISSNDFPS----------------------------- 114 (560)
T ss_pred eeehhhhHhhHHHHHhcCeeEe-eCCC-CcCceehhh-h-c-ccccccccc-----------------------------
Confidence 69999999999999999 7777 6765 678998887 3 2 222222111
Q ss_pred ccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHH
Q psy6339 726 HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLST 805 (925)
Q Consensus 726 g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~ 805 (925)
.+ ++||++||.|+.|+|++.++.= -.+-+++. .+.++++.....
T Consensus 115 ---------------------------~e---~phi~~tg~ika~k~~~nss~y-----w~~~sfp~-~k~~k~~~~~~~ 158 (560)
T KOG1637|consen 115 ---------------------------IE---APHIRHTGKIKAFKILKNSSAY-----WEGDSFPD-PKQLKEWEKFQE 158 (560)
T ss_pred ---------------------------cc---cccccccceeeeeeeeccchhh-----hccccCCC-HHHHHHHHhhch
Confidence 11 1999999999999999998741 11226777 778888888888
Q ss_pred hhhhccccccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecc
Q psy6339 806 AASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGN 884 (925)
Q Consensus 806 elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~ 884 (925)
+++..++++. ++ +++|||++ -++|+++||||+++++| |++..+||.+|++++++||.+ ++|+.++||.|||
T Consensus 159 Ea~~rdHRki---g~-~qeLfff~-~lSPGS~FflP~G~~iy---N~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGH 230 (560)
T KOG1637|consen 159 EAKKRDHRKI---GK-EQELFFFH-ELSPGSCFFLPHGTRIY---NTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGH 230 (560)
T ss_pred hhhhhhhhhh---hh-hhhheeec-cCCCcceeeccCcchHH---HHHHHHHHHHHHhcCCceecCcchhhhhhhhhccc
Confidence 8888777765 65 89999999 99999999999999999 888999999999999999999 9999999999999
Q ss_pred cc
Q psy6339 885 WS 886 (925)
Q Consensus 885 ~s 886 (925)
|.
T Consensus 231 wq 232 (560)
T KOG1637|consen 231 WQ 232 (560)
T ss_pred hh
Confidence 98
No 32
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.38 E-value=4.1e-13 Score=106.82 Aligned_cols=44 Identities=36% Similarity=0.548 Sum_probs=38.5
Q ss_pred EEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEE
Q psy6339 739 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 786 (925)
Q Consensus 739 vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~ 786 (925)
+|||+|++ ++.++||||||+||++||.|+|++.+++++|++|||
T Consensus 1 vRvv~i~~----~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD----FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETT----TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECC----eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 58999999 899999999999999999999999999999999997
No 33
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.10 E-value=5.7e-11 Score=94.26 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEE
Q psy6339 739 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 786 (925)
Q Consensus 739 vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~ 786 (925)
+|+|.|++ ++.++||||||.||++||.|+|++.++.+.+++||+
T Consensus 1 vriv~i~~----~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD----FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECC----EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 47999999 899999999999999999999999999989999984
No 34
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.04 E-value=4e-11 Score=142.08 Aligned_cols=173 Identities=6% Similarity=0.009 Sum_probs=139.9
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCccccccccccccccCCcCCCcEEEEEeCCCCCcc
Q psy6339 672 RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVI 751 (925)
Q Consensus 672 ~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~geky~~~vRVV~Ig~~~~~~ 751 (925)
..++..+|+|... ...+|.++..++ ...| |.....++ +..|+.||.
T Consensus 30 ~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~-~~~~~~~~--------------------~~~~~~~~~----- 75 (545)
T PRK14799 30 GLGERDFYIDVKS-DTSITLDEVKKA-------INEN-VLANVSIE--------------------NNQIVYKGN----- 75 (545)
T ss_pred cccceeEEEecCC-CccccHHHHHHH-------HhcC-cceeeEee--------------------cCcEEEccC-----
Confidence 3578899999985 457777764432 3333 33332211 112456887
Q ss_pred cccccCC-CCCCCCCCcccEEEEeeeec----CCCeEEEEEEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceE
Q psy6339 752 SREPCCG-THVFNTGHIESCTVIGYKSY----NHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIA 826 (925)
Q Consensus 752 ~~elCGG-THV~nTgeIG~fkI~~~~~~----~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~ 826 (925)
.+++|+| |||+|||.|+.||++++++. ++.++||++++.+. .+.+....+.++++.+.+|+.. ++ +.+||
T Consensus 76 ~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~-~~~l~~~~~~~eea~~rdHr~l---g~-~l~lf 150 (545)
T PRK14799 76 KVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET-EEQLKDYLTWLEKAEETDHRLI---GE-KLDLF 150 (545)
T ss_pred ceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC-HHHHHHHHHHHHhcccCCHHHH---HH-HcCCc
Confidence 7999999 99999999999999999885 57899999999999 8889999999999998777765 44 67899
Q ss_pred EEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecccc
Q psy6339 827 FVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 827 f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~s 886 (925)
+++--..++.|+|+|.+...+ ..++..+|...+.+++++|-+ ......+|+.+|||.
T Consensus 151 ~~~~~~~~G~~~~lP~G~~i~---~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~ 208 (545)
T PRK14799 151 SFHEEAGSGLVLFHPKGQTIR---NELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYT 208 (545)
T ss_pred ccccccCCcceEEcChHHHHH---HHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccc
Confidence 888667899999999999888 788999999999999999999 799999999999996
No 35
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=95.21 E-value=0.038 Score=57.00 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCc--------cceec---ccccccccccc-CCC-------CCCCCCcccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDS--------IAFVN---SGMCQFKNVFL-GLT-------PAPYPRVANS 75 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dpt--------llF~n---AGM~qFk~~fl-G~~-------~p~~~r~~~~ 75 (925)
+.+++.+.++|. +.|+..+-.+++++..+-. +...| ..+..++|-.+ +.. ....-|+...
T Consensus 3 ~~~~~~~r~~l~-~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei 81 (211)
T cd00768 3 SKIEQKLRRFMA-ELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI 81 (211)
T ss_pred HHHHHHHHHHHH-HcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence 467788888998 6999999999988742110 11111 01111111100 000 0011367888
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhhcccccCccc-----HHHHHHHHHhhcccCCCCC
Q psy6339 76 QKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYY-----KRDACRMALEFLTKPPVSL 132 (925)
Q Consensus 76 QkCiR~gGKHnDld~VG~t~rHhTfFeMLGn~SFgdYf-----K~eai~~awe~Lt~~~l~l 132 (925)
++|.|.. + ...+ .+|..-|.|+|-..+|... -.+++..++++|.+ +|+
T Consensus 82 g~vfr~e----~-~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~--lg~ 134 (211)
T cd00768 82 GPAFRNE----G-GRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRA--LGI 134 (211)
T ss_pred cceeecC----C-Cccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHH--cCC
Confidence 9999983 2 1111 3677889999999999644 36677788888754 565
No 36
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=94.63 E-value=0.26 Score=53.20 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=127.4
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHND 87 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnD 87 (925)
+.|+-.+|-.+--+|.. ++|+.++.++.+= + |--.|-|. |+..-.|.--+++-+|+|.|.. |+--+
T Consensus 2 ~~~~fQ~iI~~Lq~fWa-~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpepw~vaYvqPsRRP~DGRYGe 69 (283)
T PRK09348 2 KKMTFQDIILTLQDYWA-DQGCVILQPYDME---------V--GAGTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGE 69 (283)
T ss_pred CCCcHHHHHHHHHHHHH-HCCCEEECCcccc---------c--ccccCCHHHHHHhcCCCccccccccCCCCCCCCCcCC
Confidence 45888999999999999 6999999877652 2 34478884 6666556556789999999992 11111
Q ss_pred CCCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hc
Q psy6339 88 LSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----EL 163 (925)
Q Consensus 88 ld~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~ 163 (925)
|-- --.||.=|..+=--|-.+ .-++.+ .+
T Consensus 70 --NPN-RLq~y~QfQVilKPsP~n--------------------------------------------iQelYL~SL~~l 102 (283)
T PRK09348 70 --NPN-RLQHYYQFQVILKPSPDN--------------------------------------------IQELYLGSLEAL 102 (283)
T ss_pred --Cch-hhhhheeeEEEEcCCCcc--------------------------------------------HHHHHHHHHHHh
Confidence 111 123444343322222211 222222 25
Q ss_pred CCC-CCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCc
Q psy6339 164 GVP-RDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242 (925)
Q Consensus 164 Gv~-~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ 242 (925)
||+ .+|=+|| .+|| ||-=.-|--|===|+-.|+ +||=-.-+ |.+ ..| + ++..-.
T Consensus 103 Gid~~~hDIRF-VEDn-WEsPTLGAwGlGWEVWldG------------------MEITQFTY--FQQ-vGG-i-~~~pv~ 157 (283)
T PRK09348 103 GIDPLEHDIRF-VEDN-WESPTLGAWGLGWEVWLDG------------------MEVTQFTY--FQQ-VGG-I-ECKPVT 157 (283)
T ss_pred CCCccccceeE-eecC-CCCCcccccccceEEEECC------------------eeeeeeee--eee-eCC-e-eccccc
Confidence 643 3455666 3455 5532235555557887776 67753322 222 233 2 455566
Q ss_pred ccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCC
Q psy6339 243 IDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDA 322 (925)
Q Consensus 243 IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn 322 (925)
+.-=+||||||+.|||+.|+||. .+.. ++ .|...+...+ ...+. -.|=.| |
T Consensus 158 ~EITYGLERiamylQ~vd~v~dl-~w~~---------~~-tYgdv~~~~E---~e~S~---------ynFe~a------d 208 (283)
T PRK09348 158 GEITYGLERLAMYLQGVDNVYDL-VWND---------GV-TYGDVFLQNE---VEQSK---------YNFEHA------D 208 (283)
T ss_pred eeeehhHHHHHHHHhCCCceeee-ecCC---------CC-ceeeeccccH---HHHhH---------hccccc------C
Confidence 77789999999999999999997 3433 22 3533221111 11110 122222 4
Q ss_pred chhHHHHHHHHHHHhHHhhcc
Q psy6339 323 TAKLRNVVRDALLISEDVFKV 343 (925)
Q Consensus 323 ~~vlRrilRRa~r~~~~~~~~ 343 (925)
...|+++...+-.-+++++.+
T Consensus 209 ~~~l~~~F~~~e~e~~~ll~~ 229 (283)
T PRK09348 209 VEMLFKLFDDYEKEAKRLLEK 229 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 567888888877777766543
No 37
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=93.29 E-value=0.59 Score=50.73 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=102.9
Q ss_pred cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccCCCCCCC--
Q psy6339 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVGGKHNDL-- 88 (925)
Q Consensus 12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~gGKHnDl-- 88 (925)
|+-.+|-.+--+|.. ++|+.++.++.+= + |--.|-|. |+..-.|.--+++-+|+|.|. .|=
T Consensus 1 m~fQ~iI~~Lq~fWa-~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpepw~vAYVqPsRRP----~DGRY 64 (293)
T TIGR00388 1 QTFQGLILKLQEYWA-NQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPEPWAVAYVEPSRRP----TDGRY 64 (293)
T ss_pred CCHHHHHHHHHHHHH-HCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCCcceeccccCCCCC----CCCCC
Confidence 466788888889999 6999999877652 2 34478884 666655655688999999999 240
Q ss_pred -CCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hc
Q psy6339 89 -SCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----EL 163 (925)
Q Consensus 89 -d~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~ 163 (925)
+|--+ -.||.=|..+=--|-.+ .-++.+ .+
T Consensus 65 GeNPNR-Lq~yyQfQVilKPsP~n--------------------------------------------iQelYL~SL~~l 99 (293)
T TIGR00388 65 GENPNR-LQHYYQFQVVIKPSPDN--------------------------------------------IQELYLDSLRAL 99 (293)
T ss_pred CCCchh-hhheeeeEEEECCCCcc--------------------------------------------HHHHHHHHHHHh
Confidence 12111 23343343321112111 222322 24
Q ss_pred CCC-CCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCc
Q psy6339 164 GVP-RDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242 (925)
Q Consensus 164 Gv~-~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ 242 (925)
||+ .+|=+|| .+|| ||-=.-|--|===|+--|+ +||=-. +=|.+ ..| + ++..-.
T Consensus 100 Gid~~~hDIRF-VEDn-WEsPTLGAwGlGWEVWldG------------------MEITQF--TYFQQ-vGG-i-~~~pv~ 154 (293)
T TIGR00388 100 GIDPTEHDIRF-VEDN-WENPTLGAWGLGWEVWLDG------------------MEVTQF--TYFQQ-VGG-L-ECKPVS 154 (293)
T ss_pred CCCccccCeeE-eecC-CCCCcccccccccEEEECC------------------eeeeee--eeeee-eCC-e-eccccc
Confidence 643 3455676 3455 5532235555556777776 677533 22222 223 2 344455
Q ss_pred ccccchHHHHHHHHhCCCCcccccccH
Q psy6339 243 IDTGLGFERLVTILQNKTSTYDTDLFL 269 (925)
Q Consensus 243 IDTGmGLERl~~vlqg~~snydtD~f~ 269 (925)
+.-=+||||||+.|||+.|+||. .|.
T Consensus 155 ~EITYGLERiaMylQ~vd~v~dl-~w~ 180 (293)
T TIGR00388 155 VEITYGLERLAMYIQGVENVYDL-EWS 180 (293)
T ss_pred eeeehhHHHHHHHHhCCCeeeee-eec
Confidence 67779999999999999999997 444
No 38
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=92.07 E-value=1.1 Score=48.44 Aligned_cols=167 Identities=21% Similarity=0.358 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCCCCCCC
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHNDLSCAG 92 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnDld~VG 92 (925)
.+|-.+--+|.. ++|+.++.++.+= .|--.|-|. |+..-.|.--+++-+|+|.|.. |+--+ |--
T Consensus 3 Q~iI~~Lq~fW~-~~GC~i~qPyD~E-----------vGAGT~hPaTflr~Lgpepw~vAYVqPsrRP~DGRYGe--NPN 68 (279)
T cd00733 3 QDLILKLQKFWA-SQGCLIIQPYDME-----------VGAGTFHPATFLRALGPEPWNVAYVEPSRRPTDGRYGE--NPN 68 (279)
T ss_pred HHHHHHHHHHHH-HCCCEEEcCcccc-----------cccccCCHHHHHHhcCCCcceeccccCCCCCCCCCcCC--Cch
Confidence 456667778889 6999999877652 234478884 6666556556789999999992 11111 111
Q ss_pred CCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hcCCC-C
Q psy6339 93 RDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----ELGVP-R 167 (925)
Q Consensus 93 ~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~Gv~-~ 167 (925)
+ -.||.=|..+=--|-. . .-++.+ .+||+ .
T Consensus 69 R-Lq~y~QfQViiKPsP~-------------------------n-------------------iQelYL~SL~~lGid~~ 103 (279)
T cd00733 69 R-LQHYYQFQVIIKPSPD-------------------------N-------------------IQELYLESLEALGINPK 103 (279)
T ss_pred h-hhhheeeEEEECCCCc-------------------------c-------------------HHHHHHHHHHHhCCCcc
Confidence 1 2344434332222211 1 222222 25653 3
Q ss_pred CcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccc
Q psy6339 168 DHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGL 247 (925)
Q Consensus 168 ~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGm 247 (925)
+|=+|| .+|| ||-=.-|--|===|+-.|+ +||=-.-+ |.+ ..| + ++..-.+.-=+
T Consensus 104 ~hDIRF-VEDn-WEsPTLGAwGLGWEVWldG------------------MEITQFTY--FQQ-vGG-i-~~~pv~~EiTY 158 (279)
T cd00733 104 EHDIRF-VEDN-WESPTLGAWGLGWEVWLDG------------------MEVTQFTY--FQQ-VGG-I-PCKPISVEITY 158 (279)
T ss_pred ccCeeE-eecC-CCCCcccccccccEEEECC------------------eeeeeeee--eee-eCC-e-eccccceeeeh
Confidence 455666 3455 6533235556557887776 67753322 222 233 2 45556677789
Q ss_pred hHHHHHHHHhCCCCcccc
Q psy6339 248 GFERLVTILQNKTSTYDT 265 (925)
Q Consensus 248 GLERl~~vlqg~~snydt 265 (925)
||||||+.|||+.|+||.
T Consensus 159 GLERiamylQ~vd~v~dl 176 (279)
T cd00733 159 GLERIAMYLQGVDNVYDI 176 (279)
T ss_pred hHHHHHHHHhCCCceecc
Confidence 999999999999999997
No 39
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=89.39 E-value=1.8 Score=55.45 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=107.3
Q ss_pred ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCCC
Q psy6339 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHNDL 88 (925)
Q Consensus 11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnDl 88 (925)
.|+-.+|-.+--+|+. ++|+.++.++.+= + |--.|-|. |+..-.|.--+++-+|+|.|.. |+--+
T Consensus 4 ~~~~q~~i~~l~~~w~-~~gc~~~qp~~~e---------~--gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~- 70 (1000)
T PRK14908 4 PLTMQDMLLALLRYWS-EQGCIIHQGYDLE---------V--GAGTFNPATFLRVLGPEPWRVAYVEPSRRPDDGRYGQ- 70 (1000)
T ss_pred cccHHHHHHHHHHHHH-HCCCEEECCcccc---------c--ccCcCCHHHHHhhcCCCCCcccccCCCCCCCCCCcCC-
Confidence 4788999999999999 6999999877652 2 34478884 6666556556789999999992 11111
Q ss_pred CCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hcC
Q psy6339 89 SCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----ELG 164 (925)
Q Consensus 89 d~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~G 164 (925)
|-- --.||+=|..+=--|-++ .-++.. .+|
T Consensus 71 -npn-rl~~~~q~qvi~kp~p~~--------------------------------------------~q~~yl~sl~~~g 104 (1000)
T PRK14908 71 -NPN-RLQTYTQFQVILKPVPGN--------------------------------------------PQELYLESLKAIG 104 (1000)
T ss_pred -Cch-hhhhheeeEEEECCCCcc--------------------------------------------HHHHHHHHHHHcC
Confidence 211 234555555433333322 222222 245
Q ss_pred CC-CCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcc
Q psy6339 165 VP-RDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYI 243 (925)
Q Consensus 165 v~-~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~I 243 (925)
++ .+|=+|| .+|| |+-=.-|--|===|+..|+ +||=-.-+. . ...| + ++..-.+
T Consensus 105 i~~~~~dirf-ved~-we~p~lga~glgwevw~~g------------------meitqftyf--q-q~gg-~-~~~~~~~ 159 (1000)
T PRK14908 105 IDLRDHDIRF-VHDD-WENPTIGAWGLGWEVWLDG------------------MEITQFTYF--Q-QAGG-K-PLDPISG 159 (1000)
T ss_pred CCccccceeE-eecC-CCCCcccccccccEEEECC------------------eeeeeeeee--h-hcCC-e-eccccce
Confidence 43 2344566 3555 5432235556556777776 677533322 2 2333 2 4555667
Q ss_pred cccchHHHHHHHHhCCCCcccccccH
Q psy6339 244 DTGLGFERLVTILQNKTSTYDTDLFL 269 (925)
Q Consensus 244 DTGmGLERl~~vlqg~~snydtD~f~ 269 (925)
.-=+|||||++.|||+.+.||. .|.
T Consensus 160 eitygler~~m~~q~~~~~~~~-~~~ 184 (1000)
T PRK14908 160 EITYGIERIAMYLQKVNHFKDI-AWN 184 (1000)
T ss_pred eeeccHHHHHHHHhCCCeeeee-ecC
Confidence 7789999999999999999997 443
No 40
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=89.07 E-value=1.7 Score=48.86 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccc-----------cccccCCCCC---------CCCCccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQF-----------KNVFLGLTPA---------PYPRVAN 74 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qF-----------k~~flG~~~p---------~~~r~~~ 74 (925)
+.|-+.+-+||. ++|-..|..--+.+.. -+.+|-.+| ++.+|-+.+- -..|+-.
T Consensus 5 s~i~~~ir~~f~-~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfe 78 (304)
T TIGR00462 5 ARLLAAIRAFFA-ERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQ 78 (304)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEE
Confidence 457788889999 5999888655555421 011222333 2344443221 2588888
Q ss_pred cccccccCCCCCCCCCCCCCCCcchhhhhhccc-ccCcccHHHHHHHHHhhccc
Q psy6339 75 SQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYYKRDACRMALEFLTK 127 (925)
Q Consensus 75 ~QkCiR~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYfK~eai~~awe~Lt~ 127 (925)
.-+|.|+. .+ +.||.+=|.||=-. +|.|| ++.++..=+++..
T Consensus 79 igp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~ 121 (304)
T TIGR00462 79 ICKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQE 121 (304)
T ss_pred EcCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 99999994 23 47999999998433 45566 5566555555544
No 41
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=88.19 E-value=2.1 Score=48.54 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccc------cccccCCCCC--------CCCCccccccccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQF------KNVFLGLTPA--------PYPRVANSQKCVR 80 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qF------k~~flG~~~p--------~~~r~~~~QkCiR 80 (925)
+.|.+.+-+||. ++|...|..-.+.+. +. .+|..+| +|.+|-+.+- ...|+-...+|.|
T Consensus 28 s~i~~~ir~~f~-~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 28 SEVLRAFREFLR-ENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHH-HCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 467788899999 699998865555542 11 1344445 3445544321 1588889999999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhccc-ccC-cc
Q psy6339 81 VGGKHNDLSCAGRDSYHHTFFEMLGNW-SFN-DY 112 (925)
Q Consensus 81 ~gGKHnDld~VG~t~rHhTfFeMLGn~-SFg-dY 112 (925)
.. + ..+.||..=|.||.-. +|. ||
T Consensus 101 ~E----~----~~~~rHl~EFtmlE~e~~~~~~~ 126 (322)
T cd00776 101 AE----K----SNTRRHLSEFWMLEAEMAFIEDY 126 (322)
T ss_pred cC----C----CCcCCCcceeeccceeeeccCCH
Confidence 94 1 3467999999998755 444 54
No 42
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=88.07 E-value=3.1 Score=44.90 Aligned_cols=167 Identities=22% Similarity=0.323 Sum_probs=104.9
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccCCCCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVGGKHNDL 88 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~gGKHnDl 88 (925)
+.|+-..|--+--+|.. ++|+.++-++-+= .|--.|-|. ||..--|.-=.++-+|+|-|.+ |
T Consensus 3 ~~~~fQ~~IltLq~yW~-~qGC~i~QpyD~e-----------vGAGT~hPaTfLralGpePw~aAYVqPSRRP~----D- 65 (298)
T COG0752 3 KKLTFQGLILTLQNYWA-EQGCTILQPYDME-----------VGAGTFHPATFLRALGPEPWNAAYVQPSRRPT----D- 65 (298)
T ss_pred ccccHHHHHHHHHHHHH-HcCCEEecccccc-----------cccCcCChHHHHHhcCCCccceeeeccCCCCC----C-
Confidence 46788888889999999 6999998876542 234478996 6666555444688899999993 4
Q ss_pred CCCCCCCC------cchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHH--
Q psy6339 89 SCAGRDSY------HHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIW-- 160 (925)
Q Consensus 89 d~VG~t~r------HhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW-- 160 (925)
|+=+- ||-=|.. +++=+|+.+ -++.
T Consensus 66 ---GRYGenPNRlq~yyQfQV-------------------------ilKPsP~Ni-------------------QeLYL~ 98 (298)
T COG0752 66 ---GRYGENPNRLQHYYQFQV-------------------------IIKPSPDNI-------------------QELYLG 98 (298)
T ss_pred ---CCCCCCchhhhhheeEEE-------------------------EecCCCccH-------------------HHHHHH
Confidence 43322 2111111 233344432 2233
Q ss_pred --HhcCCC-CCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCcccc
Q psy6339 161 --LELGVP-RDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP 237 (925)
Q Consensus 161 --~~~Gv~-~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~ 237 (925)
+.+||+ .+|=+||- +|| ||-=.-|--|-==|+..|+ +||=-.-+ |.+ ..| + +
T Consensus 99 SL~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWldG------------------MEvTQFTY--FQQ-vGG-i-e 153 (298)
T COG0752 99 SLEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLDG------------------MEVTQFTY--FQQ-VGG-L-E 153 (298)
T ss_pred HHHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEcC------------------eeeeeeeh--hhh-hCC-e-e
Confidence 236754 34667773 445 6644346667667887776 67653322 222 233 2 3
Q ss_pred CCCCcccccchHHHHHHHHhCCCCcccc
Q psy6339 238 LSKNYIDTGLGFERLVTILQNKTSTYDT 265 (925)
Q Consensus 238 Lp~k~IDTGmGLERl~~vlqg~~snydt 265 (925)
+..-.+.--+||||||+.+||+.++||.
T Consensus 154 c~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 154 CKPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ccceeeeeehhHHHHHHHHhCccceeEE
Confidence 3334556679999999999999999997
No 43
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=86.90 E-value=1.3 Score=48.27 Aligned_cols=166 Identities=22% Similarity=0.342 Sum_probs=87.2
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCCCCCCCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHNDLSCAGR 93 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnDld~VG~ 93 (925)
+|-.+--+|.. ++|+.++.++.+= .|--.|-|. |+..-.|.--+++-+|+|.|.. |+-- +|--+
T Consensus 3 ~iI~~Lq~fW~-~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpepw~vaYVqPsrRP~DGRYG--eNPNR 68 (284)
T PF02091_consen 3 DIILTLQKFWA-DQGCIILQPYDIE-----------VGAGTFHPATFLRALGPEPWNVAYVQPSRRPTDGRYG--ENPNR 68 (284)
T ss_dssp HHHHHHHHHHH-CTT-EE----SS-------------SSGGGSHHHHTTTSSSS-EEEEEEEEEE-GGG--TT--TSSS-
T ss_pred HHHHHHHHHHH-HCCCEEECCcccc-----------cccccCCHHHHHHhcCCCCccccccccCCCCCCCccC--CCchH
Confidence 45566678888 6999999877652 244578884 7777667667899999999982 1111 12222
Q ss_pred CCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hcCCC-CC
Q psy6339 94 DSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----ELGVP-RD 168 (925)
Q Consensus 94 t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~Gv~-~~ 168 (925)
-.||.=|..+=--|-. ..-++.. .+||+ .+
T Consensus 69 -Lq~y~QfQVilKPsP~--------------------------------------------niq~lYL~SL~~lGId~~~ 103 (284)
T PF02091_consen 69 -LQHYYQFQVILKPSPD--------------------------------------------NIQELYLESLEALGIDPKE 103 (284)
T ss_dssp --SEEEEEEEEEES--T--------------------------------------------THHHHHHHHHHHCT--CCC
T ss_pred -hhhhheeEEEEcCCCc--------------------------------------------cHHHHHHHHHHHhCCCccc
Confidence 2233333332111211 1223332 25643 34
Q ss_pred cccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccch
Q psy6339 169 HIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLG 248 (925)
Q Consensus 169 ~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmG 248 (925)
|=+|| .+|| ||-=.-|--|===|+--|+ +||=-.-+.| + ..| -++..-.+.-=+|
T Consensus 104 hDIRF-VEDn-WEsPtLGAwGlGWEVWldG------------------MEITQfTYFQ--Q-vGG--i~~~pv~~EITYG 158 (284)
T PF02091_consen 104 HDIRF-VEDN-WESPTLGAWGLGWEVWLDG------------------MEITQFTYFQ--Q-VGG--IDCKPVSVEITYG 158 (284)
T ss_dssp S-EEE-EEE--EEETTTTEEEEEEEEEETT------------------CEEEEEEEEE--E-ETT--EE-SS--EEEEEE
T ss_pred cceeE-eecC-CCCCcccccccccEEEECC------------------EEEEEeeeee--e-eCC--ccccccceehhhh
Confidence 55676 3555 5432224455556777776 6775433332 2 223 2566667778899
Q ss_pred HHHHHHHHhCCCCcccc
Q psy6339 249 FERLVTILQNKTSTYDT 265 (925)
Q Consensus 249 LERl~~vlqg~~snydt 265 (925)
|||||+.|||+.+.||.
T Consensus 159 LERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 159 LERIAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHHHHCT-SSGGGS
T ss_pred HHHHHHHHhCCCeeEee
Confidence 99999999999999997
No 44
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=84.91 E-value=3.7 Score=48.38 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=54.7
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCC-CCccceeccccccc------cccccCCCCC---------CCCCcccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYG-DDSIAFVNSGMCQF------KNVFLGLTPA---------PYPRVANSQKCV 79 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~-dptllF~nAGM~qF------k~~flG~~~p---------~~~r~~~~QkCi 79 (925)
.|-+.+-+||. ++|-..|..--|++.. ++ |-..| ++.+|-+.+- ...|+-...+|.
T Consensus 138 ~i~~~iR~ff~-~~gf~EV~TP~L~~~~~eg-------~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~F 209 (428)
T TIGR00458 138 GVLESVREFLA-EEGFIEVHTPKLVASATEG-------GTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIF 209 (428)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCceecCCCCC-------CcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccc
Confidence 45567788999 5898888544444311 11 11122 2334433221 257888899999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhhccc-ccCcccHHHHHHHHHhh
Q psy6339 80 RVGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYYKRDACRMALEF 124 (925)
Q Consensus 80 R~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYfK~eai~~awe~ 124 (925)
|.. + ..|.||.+=|.||--. +|.|| ++.++.+=++
T Consensus 210 R~E-------~-~~t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~l 245 (428)
T TIGR00458 210 RAE-------E-HNTHRHLNEATSIDIEMAFEDH--HDVMDILEEL 245 (428)
T ss_pred ccC-------C-CCCccchheeeEeeeeeccCCH--HHHHHHHHHH
Confidence 993 2 3357999999998655 67777 5555444443
No 45
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=81.70 E-value=10 Score=45.08 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcC-CCCcc-ceec-ccc-----ccc-cccccCCCCC--------CCCCccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPY-GDDSI-AFVN-SGM-----CQF-KNVFLGLTPA--------PYPRVANSQKC 78 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~-~dptl-lF~n-AGM-----~qF-k~~flG~~~p--------~~~r~~~~QkC 78 (925)
.|-+.+-+||. ++|...|..--+.+. .++.. +|.- +-+ +-| ++++|-+.+- -..|+-...+|
T Consensus 138 ~i~~~iR~f~~-~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 138 TLAQAIHEFFN-ENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHH-HCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 56677889999 599988854444331 11111 1211 101 111 2334433221 25888888999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhhccc-ccCcccHHHHHHHHH
Q psy6339 79 VRVGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYYKRDACRMAL 122 (925)
Q Consensus 79 iR~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYfK~eai~~aw 122 (925)
.|.. + ..|.||..=|.||--. +|.|| +|.+..+=
T Consensus 217 FR~E----~----~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e 251 (450)
T PRK03932 217 FRAE----N----SNTRRHLAEFWMIEPEMAFADL--EDNMDLAE 251 (450)
T ss_pred cccC----C----CCCccccccccccceEEeccCH--HHHHHHHH
Confidence 9994 2 2467999888888754 67775 44444333
No 46
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=78.28 E-value=3.3 Score=49.75 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=58.0
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccc--------cccccCCCCC---------CCCCccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQF--------KNVFLGLTPA---------PYPRVANSQKC 78 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qF--------k~~flG~~~p---------~~~r~~~~QkC 78 (925)
.|-+.+-+||. ++|-..|..--|.+. + ..|..-+| ++.+|-+++- -..|+-..-+|
T Consensus 177 ~i~~~iR~fl~-~~gF~EVeTP~L~~~--~----gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 177 KIIKAIRRFLD-DRGFIEVETPMLQVI--P----GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHH-HCcCEEEeCCeeecC--C----CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 45567778999 599888854334332 1 11222222 2234443321 25788888999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhhcc-cccCcc-----cHHHHHHHHHhhcc
Q psy6339 79 VRVGGKHNDLSCAGRDSYHHTFFEMLGN-WSFNDY-----YKRDACRMALEFLT 126 (925)
Q Consensus 79 iR~gGKHnDld~VG~t~rHhTfFeMLGn-~SFgdY-----fK~eai~~awe~Lt 126 (925)
.|.. |.+.||..=|.||=- ++|.|| +-++-|..++.-|.
T Consensus 250 FRnE---------~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~ 294 (496)
T TIGR00499 250 FRNE---------GVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELL 294 (496)
T ss_pred eecC---------CCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 9994 334699999999876 477787 44555666665553
No 47
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=77.33 E-value=4.1 Score=45.01 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCc-CCCC-ccceeccccccc---cccccCCCC---------CCCCCccccccccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVP-YGDD-SIAFVNSGMCQF---KNVFLGLTP---------APYPRVANSQKCVR 80 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp-~~dp-tllF~nAGM~qF---k~~flG~~~---------p~~~r~~~~QkCiR 80 (925)
++|-+.+-+||. ++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+.+ .-..|+-...+|.|
T Consensus 5 s~i~~~ir~~f~-~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 5 SKIIKAIRDFMD-DRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 467888999999 58988885433332 1111 1122110 00 112222211 12468888899999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhccc-ccCcccHHHHHHHHHhh
Q psy6339 81 VGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYYKRDACRMALEF 124 (925)
Q Consensus 81 ~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYfK~eai~~awe~ 124 (925)
. | +.|.||..=|-||--- +|.|| +|.+..+=++
T Consensus 81 ~-----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~l 114 (269)
T cd00669 81 N-----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERL 114 (269)
T ss_pred C-----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHH
Confidence 9 3 4478999999998654 66676 4444444333
No 48
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=75.87 E-value=12 Score=39.57 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCC--------------------------CCccceeccccccccccccCCC---
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYG--------------------------DDSIAFVNSGMCQFKNVFLGLT--- 65 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~--------------------------dptllF~nAGM~qFk~~flG~~--- 65 (925)
..|.+.+.+.|+ +.|...|....+.|.+ ++.+.+.-..=.++-.++....
T Consensus 6 ~~l~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~ 84 (235)
T cd00670 6 RALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSY 84 (235)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccc
Confidence 467888889998 6899888776666631 0111111111111111222221
Q ss_pred -CCCCCCccccccccccCCCCCCCCC-CCCCCCcchhhhhhcccccCc-----ccHHHHHHHHHhhcccCCCCCC
Q psy6339 66 -PAPYPRVANSQKCVRVGGKHNDLSC-AGRDSYHHTFFEMLGNWSFND-----YYKRDACRMALEFLTKPPVSLP 133 (925)
Q Consensus 66 -~p~~~r~~~~QkCiR~gGKHnDld~-VG~t~rHhTfFeMLGn~SFgd-----YfK~eai~~awe~Lt~~~l~l~ 133 (925)
+.| -|++...+|.|. .... -|. .|-+- |.|.|-..||+ ..-.|.++.++++|.+ ||++
T Consensus 85 ~~lP-~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~--lgl~ 149 (235)
T cd00670 85 RALP-LRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIARE--LGLP 149 (235)
T ss_pred hhcC-eeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHHH--cCCc
Confidence 112 267888899998 2222 122 24333 78999999985 3456789999999965 7885
No 49
>PLN02850 aspartate-tRNA ligase
Probab=74.31 E-value=11 Score=45.59 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCC-CCc-cceeccccccc-cccccCCCCC---------CCCCccccccccccCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYG-DDS-IAFVNSGMCQF-KNVFLGLTPA---------PYPRVANSQKCVRVGG 83 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~-dpt-llF~nAGM~qF-k~~flG~~~p---------~~~r~~~~QkCiR~gG 83 (925)
.|-+.|-+||. ++|...|..--|++.. ++. -.|.- .-| ++++|-+.+- -..|+-..-+|.|+.
T Consensus 230 ~i~~~~R~fl~-~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE- 304 (530)
T PLN02850 230 QVCNLFREFLL-SKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE- 304 (530)
T ss_pred HHHHHHHHHHH-HCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC-
Confidence 56678889999 5898888543343311 111 12221 011 4445544321 258888899999994
Q ss_pred CCCCCCCCCCCCCcchhhhhhccc-ccC
Q psy6339 84 KHNDLSCAGRDSYHHTFFEMLGNW-SFN 110 (925)
Q Consensus 84 KHnDld~VG~t~rHhTfFeMLGn~-SFg 110 (925)
+ ..|.||.+=|.||=-. +|+
T Consensus 305 ------~-s~t~RHl~EFt~Le~Em~~~ 325 (530)
T PLN02850 305 ------D-SFTHRHLCEFTGLDLEMEIK 325 (530)
T ss_pred ------C-CCCCccchhhccchhhhhhh
Confidence 2 2688999999999655 776
No 50
>KOG1501|consensus
Probab=72.28 E-value=5.7 Score=46.32 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCC
Q psy6339 242 YIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYG 285 (925)
Q Consensus 242 ~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~ 285 (925)
.|+||-||=-+-++-.|..+.|-..+|.|+.+...++..+.+.+
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 48899999999999999999999999999999999987665443
No 51
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=71.03 E-value=20 Score=42.50 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=54.3
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCC-CCcc-ceeccccccc-cccccCCCCC---------CCCCccccccccccCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYG-DDSI-AFVNSGMCQF-KNVFLGLTPA---------PYPRVANSQKCVRVGG 83 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~-dptl-lF~nAGM~qF-k~~flG~~~p---------~~~r~~~~QkCiR~gG 83 (925)
.|-+.+-+||. ++|-..|..--|+... +... +|.- +-| ++++|-+.+- ...|+-..-+|.|..
T Consensus 141 ~i~~~iR~ff~-~~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E- 215 (437)
T PRK05159 141 EVLRAFREFLY-ENGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAE- 215 (437)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCC-
Confidence 45567788999 5898888543333211 1100 1110 001 3344444321 257888889999994
Q ss_pred CCCCCCCCCCCCCcchhhhhhccc-ccCc-c-----cHHHHHHHHHh
Q psy6339 84 KHNDLSCAGRDSYHHTFFEMLGNW-SFND-Y-----YKRDACRMALE 123 (925)
Q Consensus 84 KHnDld~VG~t~rHhTfFeMLGn~-SFgd-Y-----fK~eai~~awe 123 (925)
+ ..|.||..=|.||--. +|.| | +-++.+...+.
T Consensus 216 ------~-~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~ 255 (437)
T PRK05159 216 ------E-HNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYE 255 (437)
T ss_pred ------C-CCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHH
Confidence 2 2356999999998655 6666 5 23444444443
No 52
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=67.58 E-value=6.3 Score=45.00 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCceEEeeeecccccccCCCCcccc--CCCCcccc--------cchHHHHHHHHhCCCC
Q psy6339 212 DRNDLIEIWNIVFISHKRVSADTIVP--LSKNYIDT--------GLGFERLVTILQNKTS 261 (925)
Q Consensus 212 ~~~r~lEiwNlVFmqy~r~~~g~l~~--Lp~k~IDT--------GmGLERl~~vlqg~~s 261 (925)
....||||-. .|.+.| |..-.||. ||||||||++.-|.+.
T Consensus 275 k~~~WiEilG----------~Gmv~p~vl~~~gid~~~~~G~AfG~GleRlaMl~ygi~D 324 (339)
T PRK00488 275 KGTGWLEILG----------CGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYGIDD 324 (339)
T ss_pred CCCCceEEec----------cCccCHHHHHHcCCCcccceEEEEeecHHHHHHHHhCCcH
Confidence 3456899873 343322 44444554 9999999999988763
No 53
>PRK06462 asparagine synthetase A; Reviewed
Probab=64.73 E-value=25 Score=40.21 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.0
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
+|==-|||+|||++.+-|..+.=|+-+|
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~F 326 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPF 326 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeec
Confidence 5667799999999999999887666444
No 54
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=63.92 E-value=3.7 Score=39.55 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=20.0
Q ss_pred HHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 119 RMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 119 ~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
.---++|++ +||||+||+||.++.
T Consensus 79 ~~i~~~l~~-~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITK-ECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHH-HcCCCcccEEEEEEc
Confidence 344577888 999999999999983
No 55
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=61.76 E-value=8 Score=44.06 Aligned_cols=60 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred CceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHHHHHHHhCCCC
Q psy6339 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTS 261 (925)
Q Consensus 190 PcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLERl~~vlqg~~s 261 (925)
|+-|+.+... .|..||||.+.=-..-|-...--+.|-+....==||||||||++.-|.+.
T Consensus 262 PS~Evdv~~~------------~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 262 PSAEVDVYCP------------GCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred CeEEEEEEEc------------CCCCEEEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 5788877652 12468999854211111111111112222222569999999999988753
No 56
>KOG1759|consensus
Probab=59.26 E-value=4.9 Score=38.76 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.9
Q ss_pred HHHhhcccCCCCCCCCceEEEEEc
Q psy6339 120 MALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 120 ~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
---|+|.+ .|+|||+|+|+++|.
T Consensus 79 ~l~~il~~-~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEK-ELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHH-HhCCCCCeEEEEEec
Confidence 34578888 999999999999994
No 57
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.35 E-value=5.8 Score=26.74 Aligned_cols=9 Identities=33% Similarity=0.862 Sum_probs=7.4
Q ss_pred CCCCcCceE
Q psy6339 185 TGPCGYSSE 193 (925)
Q Consensus 185 ~GpcGPcsE 193 (925)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 499999974
No 58
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=50.93 E-value=13 Score=44.64 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=36.7
Q ss_pred CceEEEeecCCCCCCcccccCCCCCceEEeeeeccccccc-CCCCccccCCCCcccccchHHHHHHHHhCCCC
Q psy6339 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKR-VSADTIVPLSKNYIDTGLGFERLVTILQNKTS 261 (925)
Q Consensus 190 PcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r-~~~g~l~~Lp~k~IDTGmGLERl~~vlqg~~s 261 (925)
|+-||+..+. .+.+||||.|.=.++-+- .+-| + |=+...+==||||||+|++.-|.+.
T Consensus 425 PS~Ev~v~~~------------~~gkWIEIgg~Gm~rpevL~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 425 PSMEIFGYHP------------GLKKWVEVGNSGIFRPEMLRPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred CeeEEEEEec------------CCCcEEEEeCcCccCHHHHHhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 5788887653 124699999875554221 1122 1 1122357779999999999987654
No 59
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=42.75 E-value=19 Score=34.40 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 114 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 114 K~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
|++-.+---++|.+ .||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~-~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILAS-HLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHH-HhCcCcccEEEEEEE
Confidence 55566666688888 999999999999875
No 60
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=39.88 E-value=15 Score=40.27 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.7
Q ss_pred CcccccchHHHHHHHHhCCCCc
Q psy6339 241 NYIDTGLGFERLVTILQNKTST 262 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~sn 262 (925)
..+=-||||||||++..|.+..
T Consensus 212 ~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SSG
T ss_pred eEEEecCCHHHHHHHHcCCchH
Confidence 5666799999999999998753
No 61
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=37.83 E-value=18 Score=34.97 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 897 RMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 897 ~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
.---++|++ .||||++|+|+++-
T Consensus 79 ~~i~~~l~~-~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 79 PRITAAITK-ECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHH-HcCCCcccEEEEEE
Confidence 344567887 49999999999873
No 62
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=34.87 E-value=34 Score=41.11 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHhcccCCCcEEeC-CCCCC
Q psy6339 13 CSKSIRSSFLDYFCNTQGHTLVK-SSPIV 40 (925)
Q Consensus 13 ~~~eiR~~Fl~fF~~~~gH~~v~-ssslv 40 (925)
...++|+.+-++|. +-|.+.++ ...|.
T Consensus 222 Pl~~~~~ei~~if~-~mGF~e~~~g~~ve 249 (492)
T PLN02853 222 PLLKVRQQFRKIFL-QMGFEEMPTNNFVE 249 (492)
T ss_pred HHHHHHHHHHHHHH-hCCCEEecCCCCee
Confidence 46789999999999 59999996 44443
No 63
>smart00438 ZnF_NFX Repressor of transcription.
Probab=33.61 E-value=18 Score=26.08 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.7
Q ss_pred CCCCcCceEEE
Q psy6339 185 TGPCGYSSEIH 195 (925)
Q Consensus 185 ~GpcGPcsEI~ 195 (925)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999998653
No 64
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=33.56 E-value=14 Score=35.44 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=17.2
Q ss_pred HHHhhcccCCCCCCCCceEEEEEc
Q psy6339 120 MALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 120 ~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
---+||.+ .||||++|+||.++.
T Consensus 78 ~i~~~l~~-~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 78 AITEFLEE-ELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHH-HHT--GGGEEEEEEE
T ss_pred HHHHHHHH-HhCCCcCceEEEEEE
Confidence 33567888 999999999999984
No 65
>KOG2783|consensus
Probab=33.51 E-value=20 Score=41.36 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCCcccccchHHHHHHHHhCCCC
Q psy6339 239 SKNYIDTGLGFERLVTILQNKTS 261 (925)
Q Consensus 239 p~k~IDTGmGLERl~~vlqg~~s 261 (925)
..--.=-||||||||++|=+-|.
T Consensus 293 ~~igwafglgLerLAMll~~IpD 315 (436)
T KOG2783|consen 293 NYIGWAFGLGLERLAMLLFDIPD 315 (436)
T ss_pred ceeeeeeeccHHHHHHHHhcCcc
Confidence 33445579999999999977653
No 66
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=29.72 E-value=28 Score=38.73 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=24.5
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLFL 269 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f~ 269 (925)
+|==.|||+|||++++-|..|.=|+-+|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 77788999999999999999987765553
No 67
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=26.86 E-value=7.3 Score=46.33 Aligned_cols=52 Identities=10% Similarity=-0.161 Sum_probs=43.6
Q ss_pred cceeeeccCCCCCCCCCccccccceeccccc--CCcccccc-cCCcceeeeeeccccc
Q psy6339 833 CQFKNVFLGLTPAPYPRVANSQKCIRVGGKH--NDLSFAGR-DSYHHTFFEMLGNWSF 887 (925)
Q Consensus 833 ~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~--~d~~~Vg~-~~~h~t~fem~g~~sf 887 (925)
..+...|+|.+...+ ++++..+|..... .|+.+|-+ ...+..+|+.||||.-
T Consensus 27 ~~g~~d~~P~G~~l~---~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~ 81 (456)
T PRK04173 27 LAGFWDYGPLGVELK---NNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDN 81 (456)
T ss_pred hhcccccChhhHHHH---HHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccc
Confidence 344566778888777 7888999988776 79999998 7999999999999975
No 68
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=24.42 E-value=8.8 Score=45.40 Aligned_cols=52 Identities=8% Similarity=-0.047 Sum_probs=46.1
Q ss_pred cceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeeccccc
Q psy6339 833 CQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWSF 887 (925)
Q Consensus 833 ~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~sf 887 (925)
.++-++|+|.+.+.+ ..++..+|...+..++++|-+ ......+|+.+|||.-
T Consensus 36 ~~G~~~~lP~g~~i~---~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~ 88 (439)
T PRK12325 36 AAGIYSWLPLGLKVL---KKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDA 88 (439)
T ss_pred CCceEEECCcHHHHH---HHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccc
Confidence 577889999998877 788999999999999999999 7888899999999863
No 69
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=23.93 E-value=44 Score=37.91 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCc--cceeccc--cccc-cccccCCCCC---------CCCCccccccccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDS--IAFVNSG--MCQF-KNVFLGLTPA---------PYPRVANSQKCVR 80 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dpt--llF~nAG--M~qF-k~~flG~~~p---------~~~r~~~~QkCiR 80 (925)
+.|-+.+-+||. ++|...|..--+++...+. =.|..-. ..-| +|.+|-+.+- ...|+-...+|.|
T Consensus 26 s~i~~~ir~ff~-~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR 104 (335)
T PF00152_consen 26 SAILQAIREFFD-KRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFR 104 (335)
T ss_dssp HHHHHHHHHHHH-HTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-
T ss_pred HHHHHHHHHHHH-hCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheeccee
Confidence 356677889999 5899888654455432222 2333320 0011 3445554421 2577777899999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhccc-ccCccc
Q psy6339 81 VGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYY 113 (925)
Q Consensus 81 ~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYf 113 (925)
.. + ..|.||..=|.||=-. +|.||.
T Consensus 105 ~E-------~-~~~~rHl~EFtmLE~e~a~~~~~ 130 (335)
T PF00152_consen 105 NE-------E-SRTRRHLPEFTMLEWEMAFADYD 130 (335)
T ss_dssp BS-------S-SCBTTBSSEEEEEEEEEETSSHH
T ss_pred cc-------C-cccccchhhhhhhhhccccCcHH
Confidence 94 1 1589999888887433 466653
No 70
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=23.62 E-value=8.4 Score=47.54 Aligned_cols=66 Identities=3% Similarity=-0.206 Sum_probs=54.5
Q ss_pred CCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecccccccchHH
Q psy6339 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWSFNDYYKR 893 (925)
Q Consensus 822 ~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~sf~~y~k~ 893 (925)
+.+|+.+..+..++.++|+|.+...+ ..++..+|...+..++.+|.+ ..++.++|+.+|||. .|++
T Consensus 205 ~~~L~d~~~~s~~G~~~~~P~G~~i~---~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~---~f~e 271 (613)
T PRK03991 205 EKELADYEPASDVGHMRYYPKGRLIR---DLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHAD---KFGE 271 (613)
T ss_pred HCCCcccccccCeeeEEEEcHHHHHH---HHHHHHHHHHHHHCCCEEEECCeecChhHHhhccccc---ccch
Confidence 44577676677888999999888777 778888998888889999998 789999999999994 4444
No 71
>CHL00078 rpl5 ribosomal protein L5
Probab=23.57 E-value=60 Score=34.02 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=32.5
Q ss_pred chhhhhhcccccCcccHHHHH--HHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCC
Q psy6339 98 HTFFEMLGNWSFNDYYKRDAC--RMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVP 166 (925)
Q Consensus 98 hTfFeMLGn~SFgdYfK~eai--~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~ 166 (925)
.+.|.=-||+|||= ++..+ +.-++..-. ..|++ ||+--. -..|+||+.+|..+|+|
T Consensus 120 ~~sfd~~Gn~sfGi--~e~~~FPEi~~d~~~~-i~G~~-----Itivtt-----a~t~~ea~~Ll~~~g~P 177 (181)
T CHL00078 120 PKSFDGHGNYNLGL--KEQLMFPEIDYDKIDQ-IRGMD-----ISIVTT-----AKTDQEGLALLKELGMP 177 (181)
T ss_pred ccccCCCceEEECc--chhccCCCcccCccCC-cCCCe-----EEEEEe-----eCCHHHHHHHHHHcCCC
Confidence 35577779999992 22221 000222222 34553 444332 13699999999999988
No 72
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=23.55 E-value=1.1e+02 Score=37.36 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccc------cccccCCCCC---------CCCCccccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQF------KNVFLGLTPA---------PYPRVANSQKCVR 80 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qF------k~~flG~~~p---------~~~r~~~~QkCiR 80 (925)
.|-+.|-+||. ++|...|..-.|+... +-.|-..| ++++|-+.+- ...|+-...+|.|
T Consensus 218 ~i~~~~R~fl~-~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FR 290 (550)
T PTZ00401 218 RVCQYFRQFLI-DSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFR 290 (550)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEe
Confidence 56678889999 5999988544444311 11222233 3344544321 2588888999999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhcc-cccC-cc
Q psy6339 81 VGGKHNDLSCAGRDSYHHTFFEMLGN-WSFN-DY 112 (925)
Q Consensus 81 ~gGKHnDld~VG~t~rHhTfFeMLGn-~SFg-dY 112 (925)
.. +. .|.||.+=|.||=- .+|+ +|
T Consensus 291 aE-------~s-~T~RHl~EFt~Le~E~~~~~~y 316 (550)
T PTZ00401 291 SE-------NS-NTHRHLTEFVGLDVEMRINEHY 316 (550)
T ss_pred CC-------CC-CCCCCccchhhhhhhhHhcCCH
Confidence 93 33 47899999999977 6886 56
No 73
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=23.52 E-value=63 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEEE
Q psy6339 892 KRDACRMALEFLTKPPVSLPLDRLYFTF 919 (925)
Q Consensus 892 k~~~i~~~~~~lt~~~~~~~~~~~~~t~ 919 (925)
|++-.+---++|.+ .||+||+|+||.+
T Consensus 74 k~~l~~~i~~~l~~-~lgi~~~rv~I~f 100 (116)
T PTZ00397 74 NSSIAAAITKILAS-HLKVKSERVYIEF 100 (116)
T ss_pred HHHHHHHHHHHHHH-HhCcCcccEEEEE
Confidence 44555555667777 4999999999986
No 74
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=53 Score=38.87 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCC--ccceeccccccccc-cccCCCCC--------CCCCccccccccccCC
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDD--SIAFVNSGMCQFKN-VFLGLTPA--------PYPRVANSQKCVRVGG 83 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dp--tllF~nAGM~qFk~-~flG~~~p--------~~~r~~~~QkCiR~gG 83 (925)
+.|.+.|-+||. ++|-+.|.+-=+++.+.+ +-||-. ..|.. .||.+..- ...|+-+..+++|+
T Consensus 138 s~i~~a~~eff~-~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA-- 211 (435)
T COG0017 138 SSILRAIREFFY-ENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA-- 211 (435)
T ss_pred HHHHHHHHHHHH-hCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec--
Confidence 367788999999 699999877666664333 234432 23433 45655421 36899999999999
Q ss_pred CCCCCCCCCCCCCcchhhhhh
Q psy6339 84 KHNDLSCAGRDSYHHTFFEML 104 (925)
Q Consensus 84 KHnDld~VG~t~rHhTfFeML 104 (925)
.=-.|.||++=|-|+
T Consensus 212 ------E~s~T~RHL~EF~~l 226 (435)
T COG0017 212 ------EKSNTRRHLSEFWML 226 (435)
T ss_pred ------CCCCCcchhhhHhee
Confidence 224599999998774
No 75
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=20.51 E-value=35 Score=30.44 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.1
Q ss_pred CCCCCCCCcHH
Q psy6339 145 SDQYGLPCDEE 155 (925)
Q Consensus 145 d~~~gl~~D~E 155 (925)
|++||||+|+|
T Consensus 60 DeELGIppdd~ 70 (71)
T PF14813_consen 60 DEELGIPPDDE 70 (71)
T ss_pred hhhcCCCCCCC
Confidence 78888888886
No 76
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=20.41 E-value=48 Score=40.76 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcchhhhhhcc-cccCccc-----HHHHHHHHHhhccc
Q psy6339 69 YPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGN-WSFNDYY-----KRDACRMALEFLTK 127 (925)
Q Consensus 69 ~~r~~~~QkCiR~gGKHnDld~VG~t~rHhTfFeMLGn-~SFgdYf-----K~eai~~awe~Lt~ 127 (925)
..|+-...+|.|+- | -+|.||++=|-||=- .+|.||. -++-|...|..+.+
T Consensus 343 ~~rVf~i~p~FRaE----~----s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~ 399 (586)
T PTZ00425 343 MGDVYTFGPTFRAE----N----SHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLN 399 (586)
T ss_pred cCCEEEEeceEeCC----C----CCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999993 2 357899977777643 4777763 34556666765544
No 77
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=20.30 E-value=52 Score=39.25 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=22.9
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
++==-|||+|||++.+-|.++.=|+-+|
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~F 444 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPF 444 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccC
Confidence 5666799999999999999887666554
No 78
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=20.02 E-value=53 Score=37.46 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCccccccc
Q psy6339 246 GLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 246 GmGLERl~~vlqg~~snydtD~f 268 (925)
|+|||||++.+-|.++.=|+-.|
T Consensus 302 glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccC
Done!