Query psy6339
Match_columns 925
No_of_seqs 443 out of 2318
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 2E-189 6E-194 1673.8 37.0 630 10-791 55-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 6E-177 2E-181 1566.3 33.8 618 10-792 58-739 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 4E-169 2E-173 1401.5 24.8 424 12-487 2-439 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 3E-168 1E-172 1401.8 18.2 424 11-489 2-431 (465)
5 3kew_A DHHA1 domain protein; s 100.0 3.9E-52 1.3E-56 442.5 22.9 205 567-796 29-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 2.2E-47 7.7E-52 399.9 18.2 183 569-788 29-214 (216)
7 3hy0_A Alanyl-tRNA synthetase; 100.0 1.2E-42 4.1E-47 387.4 6.5 120 801-920 9-132 (441)
8 1yfs_A Alanyl-tRNA synthetase; 100.0 5.1E-42 1.8E-46 384.4 6.2 120 800-920 9-131 (465)
9 2zze_A Alanyl-tRNA synthetase; 100.0 2.7E-34 9.2E-39 342.7 6.1 142 752-916 33-186 (752)
10 2ztg_A Alanyl-tRNA synthetase; 100.0 1.1E-29 3.6E-34 303.2 5.6 141 752-916 36-185 (739)
11 1nyr_A Threonyl-tRNA synthetas 99.9 3E-27 1E-31 283.8 6.3 255 611-886 42-311 (645)
12 1qf6_A THRRS, threonyl-tRNA sy 99.9 6.6E-27 2.3E-31 280.3 5.3 255 610-886 39-311 (642)
13 1tke_A Threonyl-tRNA synthetas 99.9 1.3E-25 4.5E-30 236.3 14.4 170 610-791 39-224 (224)
14 1v4p_A Alanyl-tRNA synthetase; 99.9 2.6E-25 8.8E-30 221.4 15.0 143 644-791 4-152 (157)
15 3rf1_A Glycyl-tRNA synthetase 90.7 0.74 2.5E-05 48.8 8.9 172 10-265 23-201 (311)
16 1j5w_A Glycyl-tRNA synthetase 87.0 1.1 3.9E-05 47.2 7.2 171 11-265 12-189 (298)
17 4dh4_A MIF; trimer, isomerase; 48.0 6.4 0.00022 36.0 1.6 30 113-143 72-101 (114)
18 3fwu_A Macrophage migration in 42.0 9.7 0.00033 36.2 1.8 99 31-143 6-122 (133)
19 3djh_A Macrophage migration in 41.0 9.6 0.00033 34.9 1.6 30 113-143 71-100 (114)
20 3b64_A Macrophage migration in 40.7 11 0.00036 34.3 1.8 31 112-143 71-101 (112)
21 3kan_A D-dopachrome tautomeras 39.3 11 0.00036 35.0 1.6 29 114-143 73-101 (117)
22 1nnh_A Asparaginyl-tRNA synthe 39.1 12 0.00042 40.2 2.2 102 15-127 19-139 (294)
23 3fwt_A Macrophage migration in 37.4 12 0.0004 35.6 1.6 100 31-143 6-122 (133)
24 3r8s_F 50S ribosomal protein L 35.3 7.5 0.00026 39.0 -0.2 16 151-166 160-175 (177)
25 2wkb_A Macrophage migration in 35.0 15 0.0005 34.2 1.8 31 112-143 71-101 (125)
26 2xcz_A Possible ATLS1-like lig 34.6 14 0.00048 33.6 1.6 30 113-143 72-101 (115)
27 3t5s_A Gilaa.00834.A, macropha 34.5 13 0.00043 35.5 1.3 30 113-143 93-122 (135)
28 1hfo_A Migration inhibitory fa 34.4 14 0.00048 33.4 1.6 30 113-143 71-100 (113)
29 2atz_A H. pylori predicted cod 33.3 1E+02 0.0035 30.4 7.3 103 627-736 65-169 (180)
30 2os5_A Acemif; macrophage migr 32.9 15 0.00053 33.6 1.6 30 113-143 72-101 (119)
31 1uiz_A MIF, macrophage migrati 32.9 15 0.00053 33.3 1.6 30 113-143 72-101 (115)
32 4dh4_A MIF; trimer, isomerase; 26.9 23 0.00078 32.2 1.6 29 891-920 72-100 (114)
33 3abf_A 4-oxalocrotonate tautom 25.3 33 0.0011 27.3 2.1 29 114-143 17-45 (64)
34 2opa_A Probable tautomerase YW 25.1 25 0.00087 27.7 1.4 30 113-143 15-44 (61)
35 1otf_A 4-oxalocrotonate tautom 25.1 26 0.00087 27.8 1.4 30 113-143 15-44 (62)
36 3a5y_A GENX, putative lysyl-tR 24.7 27 0.00094 38.4 2.0 95 16-127 41-157 (345)
37 1iq4_A 50S ribosomal protein L 24.7 33 0.0011 34.4 2.4 52 100-166 121-176 (179)
38 2dq3_A Seryl-tRNA synthetase; 24.6 38 0.0013 38.3 3.2 105 15-133 176-316 (425)
39 1eh2_A EPS15; calcium binding, 24.3 1.5E+02 0.005 26.6 6.5 46 435-480 29-78 (106)
40 4gyx_A Type III collagen fragm 24.1 28 0.00094 24.2 1.1 10 183-192 19-28 (31)
41 3bbo_H Ribosomal protein L5; l 21.9 33 0.0011 35.5 1.8 19 151-169 176-194 (220)
42 1wyd_A Hypothetical aspartyl-t 21.9 33 0.0011 38.9 2.0 30 238-268 391-420 (429)
43 3nem_A Aspartyl-tRNA synthetas 21.6 34 0.0012 39.0 2.0 96 16-124 142-257 (438)
44 3b64_A Macrophage migration in 21.4 34 0.0012 30.9 1.6 29 891-920 72-100 (112)
45 1mji_A 50S ribosomal protein L 21.2 34 0.0012 34.4 1.7 52 100-166 124-179 (182)
46 1n9w_A Aspartyl-tRNA synthetas 21.1 35 0.0012 38.6 2.0 32 238-270 384-415 (422)
47 3fwu_A Macrophage migration in 21.1 34 0.0012 32.3 1.6 28 892-920 94-121 (133)
48 1qjt_A EH1, epidermal growth f 21.0 2E+02 0.0067 25.1 6.6 46 434-479 25-74 (99)
49 3m4p_A Ehasnrs, asparaginyl-tR 20.7 36 0.0012 38.9 2.0 84 16-112 161-257 (456)
50 3bju_A Lysyl-tRNA synthetase; 20.6 36 0.0012 39.6 2.0 96 16-127 181-299 (521)
51 3fia_A Intersectin-1; EH 1 dom 20.6 1.7E+02 0.0058 27.3 6.2 47 434-480 46-96 (121)
52 2xcz_A Possible ATLS1-like lig 20.1 37 0.0013 30.7 1.6 28 892-920 73-100 (115)
53 3i7f_A Aspartyl-tRNA synthetas 20.0 38 0.0013 39.7 2.0 82 16-112 249-347 (548)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.7e-189 Score=1673.77 Aligned_cols=630 Identities=23% Similarity=0.368 Sum_probs=558.2
Q ss_pred cccCHHHHHHHHHHhcccCCC---cEEeCCCCCCcCCCCccceecccccccccccc-CCCCCCCCCccccccccccCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQG---HTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCVRVGGKH 85 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~g---H~~v~ssslvp~~dptllF~nAGM~qFk~~fl-G~~~p~~~r~~~~QkCiR~gGKH 85 (925)
+.||++|||++||+||+ +|| |++||||||||+|||||||||||||||||||+ |+++||++|+||||||||+
T Consensus 55 ~~~~~~eiR~~fl~fF~-~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~---- 129 (752)
T 2zze_A 55 RXYTLDEMREXFLRFFE-XHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF---- 129 (752)
T ss_dssp SCCCHHHHHHHHHHHHH-TCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----
T ss_pred ccCCHHHHHHHHHHHHh-ccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceec----
Confidence 67999999999999999 699 99999999999999999999999999999997 9999999999999999997
Q ss_pred CCCCCCCCCCCcchhhhhhcccccC-----cccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHH
Q psy6339 86 NDLSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIW 160 (925)
Q Consensus 86 nDld~VG~t~rHhTfFeMLGn~SFg-----dYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW 160 (925)
|||||||+|+||||||||||||||| ||||+|||+|||||||+ +||||++||+
T Consensus 130 ~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~-~~gl~~~ri~---------------------- 186 (752)
T 2zze_A 130 TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK-ELXMXPEDIT---------------------- 186 (752)
T ss_dssp TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHH-TSCCCGGGEE----------------------
T ss_pred CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhh-hhhcchhhee----------------------
Confidence 7999999999999999999999999 99999999999999999 8999888873
Q ss_pred HhcCCCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeeccccc-------------
Q psy6339 161 LELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISH------------- 227 (925)
Q Consensus 161 ~~~Gv~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy------------- 227 (925)
.+||||+|| ||||||||||||. |||||||||||
T Consensus 187 --------------~~dNfW~~G--GpcGPcsEI~~dg------------------lEiwNlVFmq~~~~~~~~~~~~~~ 232 (752)
T 2zze_A 187 --------------FKENPWAGG--GNAGPAFEVLYRG------------------LEVATLVFMQYXXAPENAPQDQVV 232 (752)
T ss_dssp --------------EEECCEEET--TEEECEEEEEETT------------------EEEEEEEEEEEEECCTTCCSCCEE
T ss_pred --------------eccCcccCC--CCCCCceeEEECC------------------Eeeeeeeeeeeccccccccccchh
Confidence 178999999 9999999999983 99999999999
Q ss_pred ccCCCCccccCCCCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCC-----------CCCcccCCCCCCC
Q psy6339 228 KRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKP-----------YGRTFTTSNRTDL 296 (925)
Q Consensus 228 ~r~~~g~l~~Lp~k~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~-----------y~g~~~~~~~~~~ 296 (925)
|| ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|+++ |.|.++.++...+
T Consensus 233 ~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~ 310 (752)
T 2zze_A 233 VI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDL 310 (752)
T ss_dssp ET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSCH
T ss_pred cc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccchhhH
Confidence 88 69999999999999999999999999999999999 99999999999999862 3343332211111
Q ss_pred ------------------------CceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHhhccccccch
Q psy6339 297 ------------------------DTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLV 349 (925)
Q Consensus 297 ------------------------~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~~~~~~~~fl 349 (925)
+.++||||||+||++||||||++|||+ ||||||||||+|+|++++... + |
T Consensus 311 ~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~--~-l 387 (752)
T 2zze_A 311 RYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEV--P-L 387 (752)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCC--C-H
T ss_pred HHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHHHhCCCc--c-h
Confidence 458899999999999999999999999 599999999999998765444 7 9
Q ss_pred HHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhHHHHHHHHHh
Q psy6339 350 KELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLA 429 (925)
Q Consensus 350 ~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~ 429 (925)
++||+.|++.|+++||||.++++.|++||+.||++|.+|+ ++|+++|++.++
T Consensus 388 ~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl----------------------------~~G~~~l~~~~~ 439 (752)
T 2zze_A 388 SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETL----------------------------RRGSDLVRREIA 439 (752)
T ss_dssp HHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985 457888888776
Q ss_pred cCC--CCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHHhhhcCCCcccccccccCCCCcC
Q psy6339 430 RDP--SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTD 506 (925)
Q Consensus 430 ~~~--~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~t~ 506 (925)
+++ ..+.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++......+.. .....|+
T Consensus 440 ~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~~~~~~~--~~~~~~~-- 515 (752)
T 2zze_A 440 KLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFE--LLKDLPD-- 515 (752)
T ss_dssp HHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC-------CCCSS--SSSSSCC--
T ss_pred HhhhcCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccccchhhH--HhccCCC--
Confidence 542 12579999999999999999999999999999999998 8999999999998865211110101 1112333
Q ss_pred CCCceeeeecCCCCcccc---ccccceEEEEEeCCeeeecccccccccccCCCCcchhccccceEEEEeecceeeeCCCC
Q psy6339 507 DKYKYDYHYDTNSKRYTF---PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGG 583 (925)
Q Consensus 507 ~~~k~~f~~~~~~~gY~~---~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGG 583 (925)
++|. +|+. .+++|+|+++.. ..||||+|||||||||
T Consensus 516 ----T~~l------~Y~~~yl~~~~a~Vl~i~~-------------------------------~~VVLD~TpFYpEgGG 554 (752)
T 2zze_A 516 ----TRRL------YYEDPFMXEFDAXVLRVIX-------------------------------DWVILDATAFYPEGGG 554 (752)
T ss_dssp ----CEEH------HHHCTTCCEEEEEEEEEET-------------------------------TEEEESEECSCCSBTT
T ss_pred ----ceee------cccCCccceEEEEEEEEEc-------------------------------CEEEEeCCCCCCCCCC
Confidence 3444 3433 578999999861 2599999999999999
Q ss_pred CcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh
Q psy6339 584 QIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL 663 (925)
Q Consensus 584 Q~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl 663 (925)
||+|+|+|..++ ..+.|.+|++.+|.++|.+.. .+.|++|++|.++|||+||+++|++|||+|||++||++++
T Consensus 555 Q~~D~G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~--~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vl 627 (752)
T 2zze_A 555 QPYDTGVLIVNG-----REVXVTNVQXVGXVIIHXVED--PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVL 627 (752)
T ss_dssp BCCCCEEEEETT-----EEEEEEEEEEETTEEEEEESC--GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC-----EEEEEEeeeecCcEEEEeccc--cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 999999998644 478999999999999999975 2578999999999999999999999999999999999999
Q ss_pred -cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccccccc-CCcCCCcEEE
Q psy6339 664 -TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIP-GEIYPDDVIL 741 (925)
Q Consensus 664 -~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~-geky~~~vRV 741 (925)
.+++|+|+++.++++||||++ .+++|++++++||+.||++|++++||++.+++++||.+..+...++ +++|++.|||
T Consensus 628 G~~v~q~Gs~v~~d~~rfDFs~-~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRV 706 (752)
T 2zze_A 628 GRHVWQAGSQLTTDWARLDISH-YXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRV 706 (752)
T ss_dssp CTTCEEEEEEECSSCEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEE
T ss_pred CCceeeecCcccCCceEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEE
Confidence 788999999999999999997 4789999999999999999999999999999999997776554332 7888889999
Q ss_pred EEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcch
Q psy6339 742 IDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGD 791 (925)
Q Consensus 742 V~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~ 791 (925)
|+||+ +|+++||||||+|||+||.|+|++++++++|++||+++||.
T Consensus 707 V~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 707 VXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp EEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred EEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 99999 89999999999999999999999999999999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.1e-177 Score=1566.31 Aligned_cols=618 Identities=22% Similarity=0.360 Sum_probs=552.1
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccccc-CCCCCCCCCccccccccccCCCCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCVRVGGKHNDL 88 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~fl-G~~~p~~~r~~~~QkCiR~gGKHnDl 88 (925)
+.|+++|||++|++||+ ++||+++|||||||+||||||||||||+||||+|+ |..+||++|+|++|||||+ |||
T Consensus 58 ~~~~~~eir~~f~~ff~-~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~----~D~ 132 (739)
T 2ztg_A 58 KPFELDEMREYYLNFFE-RRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDL 132 (739)
T ss_dssp SCCCHHHHHHHHHHHHH-TTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECG----GGG
T ss_pred CCCCHHHHHHHHHHHHH-HCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCCCCCcccccccccC----ccc
Confidence 57999999999999999 69999999999999999999999999999999996 9999999999999999998 799
Q ss_pred CCCCCCCCcchhhhhhcccccC-----cccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhc
Q psy6339 89 SCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLEL 163 (925)
Q Consensus 89 d~VG~t~rHhTfFeMLGn~SFg-----dYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~ 163 (925)
||||+|+||||||||||||||| ||||+|||+|||||| + +|||||+||
T Consensus 133 envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~-~~g~~~~~i-------------------------- 184 (739)
T 2ztg_A 133 DSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-N-ELGVKKEDI-------------------------- 184 (739)
T ss_dssp GGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-H-HHTCCGGGC--------------------------
T ss_pred ccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-H-HhCCCHHHe--------------------------
Confidence 9999999999999999999999 999999999999999 7 788887754
Q ss_pred CCCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccc-------
Q psy6339 164 GVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIV------- 236 (925)
Q Consensus 164 Gv~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~------- 236 (925)
. .+||||+|| ||||||||||||+ |||||+|||||||+++|+++
T Consensus 185 -------~---~~dnfW~~g--Gp~Gpc~Ei~~dg------------------~EiwnlVfmq~~r~~~g~~~~~~~~y~ 234 (739)
T 2ztg_A 185 -------V---YKEEPWAGG--GNAGPCLEAIVGG------------------LEVATLVFMNLEEHPEGDIEIKGARYR 234 (739)
T ss_dssp -------E---EEEEEEEET--TEEEEEEEEEETT------------------EEEEEEEEEEEEECTTCCEEETTEEEE
T ss_pred -------e---eccCcccCC--CCCCCeeEEEECC------------------EEeeeeeeEEeeecCCCceeecCcccc
Confidence 2 279999999 9999999999983 99999999999999999998
Q ss_pred cCCCCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCC-----------------CCcccCCCCCCCC--
Q psy6339 237 PLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPY-----------------GRTFTTSNRTDLD-- 297 (925)
Q Consensus 237 ~Lp~k~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y-----------------~g~~~~~~~~~~~-- 297 (925)
|||+|+||||||||||||+|||++||||| +|.|||++|++++|++ | +|.++.++...++
T Consensus 235 ~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~ 312 (739)
T 2ztg_A 235 KMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGERLNQL 312 (739)
T ss_dssp EEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHHH
T ss_pred CCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccccccchhhhhhhhhhcccccCcccchhHHHH
Confidence 99999999999999999999999999999 9999999999999985 4 2333222111001
Q ss_pred ----------------------ceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHhhccccccchHHH
Q psy6339 298 ----------------------TSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKEL 352 (925)
Q Consensus 298 ----------------------~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~~~~~~~~fl~~l 352 (925)
.++||||||+||++||||||++|||+ ||||||||||+|+|++++... + |++|
T Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~--~-l~~l 389 (739)
T 2ztg_A 313 RKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGL--D-LYDL 389 (739)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSS--C-HHHH
T ss_pred HHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHHHHhCCCc--c-HHHH
Confidence 47899999999999999999999999 599999999999998765444 7 9999
Q ss_pred HHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhHHHHHHHHHhcCC
Q psy6339 353 SYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDP 432 (925)
Q Consensus 353 v~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~ 432 (925)
|+.|++.|++ ||.++++.|++||+.||++|.+|+ ++|+++|++.+++++
T Consensus 390 v~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl----------------------------~~G~~~l~~~~~~~~ 438 (739)
T 2ztg_A 390 VEMHKKILGF---EFDVPLSTVQEILELEKERYRTTV----------------------------SKGTRLVERLVERKK 438 (739)
T ss_dssp HHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999999999884 568999999987653
Q ss_pred CCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHHhhhcCCCcccccccccCCCCcCCCCce
Q psy6339 433 SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKY 511 (925)
Q Consensus 433 ~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~t~~~~k~ 511 (925)
+ |||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++.. .+. .+ ....|. +
T Consensus 439 --~-l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~~---~~~-~~-~~~~~~------T 504 (739)
T 2ztg_A 439 --K-LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQE---KKI-TL-QNEYPA------T 504 (739)
T ss_dssp --B-CCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCCC---CCC-CC-SSCCCC------C
T ss_pred --C-CCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHhhccc---cch-hh-hccCCC------c
Confidence 2 9999999999999999999999999999999998 899999999988876421 110 11 111333 3
Q ss_pred eeeecCCCCcccc---ccccceEEEEEeCCeeeecccccccccccCCCCcchhccccceEEEEeecceeeeCCCCCcccE
Q psy6339 512 DYHYDTNSKRYTF---PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDI 588 (925)
Q Consensus 512 ~f~~~~~~~gY~~---~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~ 588 (925)
+|. +|+. .+++|+|+++.. ..||||+|||||||||||+|+
T Consensus 505 ~~l------~Y~~~y~~~~~a~Vl~i~~-------------------------------~~VVLD~TpFYpEgGGQ~~D~ 547 (739)
T 2ztg_A 505 EKL------YYDDPTLLEFEAEVIGVEG-------------------------------DFVILNRSAFYPESGGQDNDV 547 (739)
T ss_dssp EEC------TTTCTTCCEEEEEEEEEET-------------------------------TEEEESEECCCCSBTTBCCCC
T ss_pred eee------cccCCcccEEEEEEEEEEc-------------------------------CEEEEeCCCCCCCCCCCCCCE
Confidence 444 3444 578999999861 259999999999999999999
Q ss_pred EEEEcCCCccccceEEEEEEEEeCCEEEEEEEeeccccc-CCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh-cce
Q psy6339 589 GVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKV-TPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCT 666 (925)
Q Consensus 589 G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l-~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v 666 (925)
|+|..++ ..+.|.+|++.+|.++|.+.. .+ ++|++|.++|||+||+++|++|||+|||++||++++ .++
T Consensus 548 G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~----~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v 618 (739)
T 2ztg_A 548 GYLIANG-----GKFEVVDVLEADGVVLHVVKG----AKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHV 618 (739)
T ss_dssp EEEEETT-----EEEEECEEEEETTEEEEECCS----SCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECC-----EEEEEEEEEEECCEEEEEEcc----cCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 9998644 478999999999999999863 34 699999999999999999999999999999999999 789
Q ss_pred eeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccccccc-CCcCCCcEEEEEeC
Q psy6339 667 YQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIP-GEIYPDDVILIDIS 745 (925)
Q Consensus 667 ~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~-geky~~~vRVV~Ig 745 (925)
+|.||++.++++||||++ .+++|++++++||+.||++|++|+||++.+++++||.+.+++..+. +++|.+.||||+||
T Consensus 619 ~q~GS~v~~d~~r~DF~~-~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IG 697 (739)
T 2ztg_A 619 WQAGARKEFSKARLDVTH-FRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVG 697 (739)
T ss_dssp CEEECCSCCSSCEEEEEC-SSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEET
T ss_pred EecCcEEcCCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEEC
Confidence 999999999999999997 4789999999999999999999999999999999998877665554 56777889999999
Q ss_pred CCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchh
Q psy6339 746 DKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDS 792 (925)
Q Consensus 746 ~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~ 792 (925)
+ +.++||||||+|||+||.|+|++++++++|++||+++||.+
T Consensus 698 d-----~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~~ 739 (739)
T 2ztg_A 698 D-----DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739 (739)
T ss_dssp T-----EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESCC
T ss_pred C-----eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEecCC
Confidence 8 89999999999999999999999999999999999999963
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=4.5e-169 Score=1401.46 Aligned_cols=424 Identities=37% Similarity=0.671 Sum_probs=402.9
Q ss_pred cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCC
Q psy6339 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCA 91 (925)
Q Consensus 12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~V 91 (925)
++++|||++||+||+ +|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~-~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenV 80 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFH-SKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENV 80 (441)
T ss_dssp CCHHHHHHHHHHHHH-HTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCHHHHHHHHHHHHH-hCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhh
Confidence 689999999999999 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhcccccCcccHHHHHHHHHhhcc--cCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCC
Q psy6339 92 GRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLT--KPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRD 168 (925)
Q Consensus 92 G~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt--~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~ 168 (925)
|+|+|||||||||||||||||||+|||+||||||| + +|||||+|||||||++ |+||++||++ +|||++
T Consensus 81 G~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~-~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gvp~~ 151 (441)
T 3hy0_A 81 GYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEK-WFALPKERLWVTVYES--------DDEAYEIWEKEVGIPRE 151 (441)
T ss_dssp TTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTT-TTCCCGGGEEEEEETT--------CHHHHHHHHHTTCCCGG
T ss_pred CCCCccccceeeccccccchhhHHHHHHHHHHHhCCCC-ccCCCHHHeEEEEeCC--------CHHHHHHHHHccCCCHH
Confidence 99999999999999999999999999999999999 5 6999999999999984 8999999998 899999
Q ss_pred cccccC-------CccCcccCCCCCCCcCceEEEeecCCCCCC-cccccCCCCCceEEeeeecccccccCCCCccccCCC
Q psy6339 169 HIKKEG-------MKCNFWEMGSTGPCGYSSEIHYDMKGEPSS-ALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSK 240 (925)
Q Consensus 169 ~I~~~~-------~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~-~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~ 240 (925)
||+++| .+||||+||++||||||||||||+|+++.+ ..+.+++||+|||||||||||||||+++|+|+|||+
T Consensus 152 rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~ 231 (441)
T 3hy0_A 152 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPK 231 (441)
T ss_dssp GEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred HeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCccccCCC
Confidence 999999 899999999999999999999999988754 344589999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccC
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFP 320 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~P 320 (925)
||||||||||||||||||++||||||+|.|||++|++++|+. |. .+++|||||||+||++|||+|||+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~~----------~~~s~rvIADH~R~~~f~iaDGv~P 300 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-DL----------SNKSLRVIADHIRSCAFLIADGVMP 300 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-CT----------TCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-cc----------ccceeEEecchHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999974 31 3789999999999999999999999
Q ss_pred CCc---hhHHHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy6339 321 DAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWK 397 (925)
Q Consensus 321 sn~---~vlRrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~ 397 (925)
||+ ||||||||||+|++++|+... +||++||+.|++.|++.||||.++++.|++||+.||++|.+|
T Consensus 301 sNeGrGYVLRRilRRAvr~g~~Lg~~~--~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~T--------- 369 (441)
T 3hy0_A 301 SNENRGYVLRRIIRRAVRHGNMLGAKE--TFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFART--------- 369 (441)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTCCS--CCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTT---------
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH---------
Confidence 999 599999999999998765544 899999999999999999999999999999999999999887
Q ss_pred cccccccchhhhccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHH
Q psy6339 398 PLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLN 477 (925)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~ 477 (925)
|.+|+++|++.+++.++ +.|||++||+||||||||+|||++||+|+|++||+++|+++|+
T Consensus 370 -------------------L~~G~~~l~~~~~~~~~-~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~ 429 (441)
T 3hy0_A 370 -------------------LERGLALLDEELAKLSG-DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAME 429 (441)
T ss_dssp -------------------HHHHHHHHHHHHHSCCS-SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhcC-CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 45699999999987654 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy6339 478 ELKERSKAKA 487 (925)
Q Consensus 478 ~~~~~sr~~~ 487 (925)
+||++||++.
T Consensus 430 ~qr~rar~~~ 439 (441)
T 3hy0_A 430 EQRRRAREAS 439 (441)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999763
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=3.5e-168 Score=1401.79 Aligned_cols=424 Identities=39% Similarity=0.694 Sum_probs=397.5
Q ss_pred ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCC
Q psy6339 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSC 90 (925)
Q Consensus 11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~ 90 (925)
.|+++|||++||+||+ +|||++||||||||+|||||||||||||||||||+|+++||++|+|+||||||+|||||||||
T Consensus 2 ~~~~~eiR~~Fl~FF~-~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlen 80 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFE-KKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ 80 (465)
T ss_dssp CCCHHHHHHHHHHHHH-TTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGG
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhh
Confidence 3899999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCCc
Q psy6339 91 AGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDH 169 (925)
Q Consensus 91 VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~~ 169 (925)
||+|+|||||||||||||||||||+|||+|||||||+ +|||||+|||||||++ |+||++||++ +|||++|
T Consensus 81 VG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~-~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~~r 151 (465)
T 1yfs_A 81 VGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPSER 151 (465)
T ss_dssp BTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHH-TSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCGGG
T ss_pred cCCCCCccchheeccccchhhhhHHHHHHHHHHHHHh-hcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCHHH
Confidence 9999999999999999999999999999999999999 9999999999999984 8999999997 8999999
Q ss_pred ccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchH
Q psy6339 170 IKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249 (925)
Q Consensus 170 I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGL 249 (925)
|+++|.+||||+||++||||||||||||+|++++ +++|||||||||||||||+++|+|+|||+|||||||||
T Consensus 152 I~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~--------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGL 223 (465)
T 1yfs_A 152 IWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE--------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGL 223 (465)
T ss_dssp EEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC--------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEH
T ss_pred eeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC--------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCH
Confidence 9999999999999999999999999999998754 27899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hhH
Q psy6339 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKL 326 (925)
Q Consensus 250 ERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vl 326 (925)
|||||||||++||||||+|.|||++|++++|++ |... ...|++|||||||+||++|||+||++|||+ |||
T Consensus 224 ERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~~------~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVL 296 (465)
T 1yfs_A 224 ERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEK------FETDVALRVIADHLRAITFAISDGVIPSNEGRGYVI 296 (465)
T ss_dssp HHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTSC------HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHH
T ss_pred HHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCCC------cccceeEEEEcchhhhhhhhhccccccCCCCcchHH
Confidence 999999999999999999999999999999986 6421 234789999999999999999999999999 599
Q ss_pred HHHHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccch
Q psy6339 327 RNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPEL 406 (925)
Q Consensus 327 RrilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~ 406 (925)
|||||||+|+|++++... +||++|||.|++.|++.||||.++++.|++||+.||++|.+|+
T Consensus 297 RRilRRavr~g~~Lg~~~--~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL----------------- 357 (465)
T 1yfs_A 297 RRILRRAMRFGYKLGIEN--PFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTL----------------- 357 (465)
T ss_dssp HHHHHHHHHHHHHTTCCS--CCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999865444 8999999999999999999999999999999999999999985
Q ss_pred hhhccccchhHhhHHHHHHHHHhcCC--CCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHH
Q psy6339 407 EQFNIMEEPGLVLGVKYLTKQLARDP--SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 484 (925)
Q Consensus 407 ~~~~~~~~~~l~~g~~~l~~~~~~~~--~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr 484 (925)
.+|+++|++.+++++ ++++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||
T Consensus 358 -----------~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar 426 (465)
T 1yfs_A 358 -----------KAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426 (465)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTT
T ss_pred -----------HHHHHHHHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHH
Confidence 458888888776542 2247999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy6339 485 AKAAS 489 (925)
Q Consensus 485 ~~~~~ 489 (925)
++++.
T Consensus 427 ~~~~~ 431 (465)
T 1yfs_A 427 KHFKV 431 (465)
T ss_dssp TC---
T ss_pred hhhhc
Confidence 87543
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=3.9e-52 Score=442.46 Aligned_cols=205 Identities=18% Similarity=0.301 Sum_probs=187.2
Q ss_pred eEEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHH
Q psy6339 567 WVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCM 646 (925)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~m 646 (925)
.+.|+||+|||||||||||+|+|+|. .+.|.+|++.+|.++|+++ +++++|++|.+.|||+||+++|
T Consensus 29 ~~~vvLd~T~FYpegGGQ~~D~G~i~---------~~~V~~v~~~~g~i~H~~~----~~l~~g~~V~~~vD~~rR~~~~ 95 (241)
T 3kew_A 29 KFHVLLDQTAFFPGGGGQMGDLGLID---------GIKVLDVYEEEGKVYHVLE----KEPKKLKNLQCELDWERRFDGM 95 (241)
T ss_dssp EEEEEESEECCCCCBTTBCCCCEEET---------TEEEEEEEEETTEEEEEES----SCCCCCSSEEEEECHHHHHHHH
T ss_pred eEEEEEeCCcccCCCCCCCCCEEEEe---------eEEEEEEEEeCCEEEEEEC----CcCCCCCEEEEEECHHHhhhHH
Confidence 57899999999999999999999994 3789999999999999986 3688999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccc
Q psy6339 647 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT 725 (925)
Q Consensus 647 r~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~ 725 (925)
++|||+|||++||++++ .+ |.|+++.++++||||+ ++++++++++||+.||++|++|+||++.+++++||++.
T Consensus 96 ~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~---~~lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~- 169 (241)
T 3kew_A 96 QQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV---GFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKV- 169 (241)
T ss_dssp HHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE---SCCCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC---CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhc-
Confidence 99999999999999999 44 5899999999999998 58999999999999999999999999999999999665
Q ss_pred ccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHH
Q psy6339 726 HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAA 796 (925)
Q Consensus 726 g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~ 796 (925)
+++++ .++|++.+|||+||+ +|.++||||||+|||+||.|+|+++++++ |.+||+|+||.+|++.
T Consensus 170 ~~~~~-~e~~~~~VRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 170 KTRRA-LPKTDEEIRIVEIVG----LDLNACCGVHPRNTRDLQVIKIRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp CCSSC-CCCCSSCCCEEEETT----TEEEECCSCCCSBSGGGCCEEEEEEEEET-TEEEEEEEEGGGGC--
T ss_pred Chhhc-CCccCCcEEEEEECC----eEEEcCCCCCcCCHhhcCCEEEEEEeccC-CcEEEEEEECHHHHhc
Confidence 45554 577888999999999 89999999999999999999999999975 5579999999998764
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=2.2e-47 Score=399.92 Aligned_cols=183 Identities=25% Similarity=0.293 Sum_probs=169.1
Q ss_pred EEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEe-CCEEEEEEEeecccccCCCCeEEEEEchhchHHHHH
Q psy6339 569 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL-EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMR 647 (925)
Q Consensus 569 ~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~-~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr 647 (925)
.|+||+|||||||||||+|+|+|. . ++|.+|++. +|.++|++.. .+.+++|++|.+.|||+||+++|+
T Consensus 29 ~vvld~T~Fype~GGQ~~D~G~i~--------~-~~V~~v~~~~~~~i~H~~~~--~~~l~~g~~v~~~vD~~rR~~~~~ 97 (216)
T 2e1b_A 29 AILLDQTIFYPTGGGQPHDRGTIN--------G-VEVLDVYKDEEGNVWHVVKE--PEKFKVGDEVELKIDWDYRYKLMR 97 (216)
T ss_dssp CCCBSCCCSCCCCTTCCCCCEEET--------T-EEEEEEECCTTCCCEEEESC--GGGCCSSSCEEEEECHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCCCCCEEEEc--------c-EEEEEEEECcCCEEEEEEcc--CCCcCCCCEEEEEECHHHHHHHHH
Confidence 599999999999999999999994 1 789999997 8999999974 247899999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhcc--eeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccc
Q psy6339 648 AHTTSHLLNAALRRVLTC--TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT 725 (925)
Q Consensus 648 ~HTAtHLL~aAL~~vl~~--v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~ 725 (925)
+|||+|||++||+++++. +.+.|++++++++||||++ .++++++ +++||+.||++|++|+||++.++++
T Consensus 98 ~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~-~~~lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~------- 168 (216)
T 2e1b_A 98 IHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY-PENLNKY-KEQIISLFNKYVDEGGEVKIWWEGD------- 168 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEEC-SSCGGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------
T ss_pred HhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeC-CCCCCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------
Confidence 999999999999999943 5667999999999999997 4678887 9999999999999999999988765
Q ss_pred ccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEE
Q psy6339 726 HLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 788 (925)
Q Consensus 726 g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~v 788 (925)
+|||+||+ +|.++||||||+|||+||.|+|++++++++|++||++.
T Consensus 169 -------------vRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 169 -------------RRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp -------------CEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred -------------EEEEEECC----EEEECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEE
Confidence 69999999 89999999999999999999999999999999999986
No 7
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=1.2e-42 Score=387.43 Aligned_cols=120 Identities=45% Similarity=0.738 Sum_probs=110.2
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcce
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t 877 (925)
+..+..+.+ |.++ ++|+||+|||+|+||||||+||||||+|..+|||+|++++|||||++||||||||||+|+||||
T Consensus 9 ~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG~t~rHhT 88 (441)
T 3hy0_A 9 QAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 88 (441)
T ss_dssp HHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBTTBSSCCS
T ss_pred HHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhCCCCcccc
Confidence 444555543 6667 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccccccchHHHHHHHHHHhhccC-CCCCCCCcEEEEEe
Q psy6339 878 FFEMLGNWSFNDYYKRDACRMALEFLTKP-PVSLPLDRLYFTFP 920 (925)
Q Consensus 878 ~fem~g~~sf~~y~k~~~i~~~~~~lt~~-~~~~~~~~~~~t~~ 920 (925)
||||+||||||||||+|||.|||||||++ +|||||+||||||-
T Consensus 89 fFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf 132 (441)
T 3hy0_A 89 FFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY 132 (441)
T ss_dssp EEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEE
T ss_pred ceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEe
Confidence 99999999999999999999999999931 69999999999973
No 8
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=5.1e-42 Score=384.40 Aligned_cols=120 Identities=46% Similarity=0.785 Sum_probs=110.7
Q ss_pred HHHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcc
Q psy6339 800 GKHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876 (925)
Q Consensus 800 ~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~ 876 (925)
++..++.+.+ |.++ ++|+||+|||+|+|+||||+||||||||..+||++|++++|||||+++|||||||||+|+|||
T Consensus 9 R~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenVG~t~rHh 88 (465)
T 1yfs_A 9 RELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHH 88 (465)
T ss_dssp HHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBTTBSSCC
T ss_pred HHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhcCCCCCcc
Confidence 3444555544 5667 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 877 TFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 877 t~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|||||+||||||||||+|||+|||||||+ +|||||+||||||-
T Consensus 89 TfFEMLGNfSFGDYFK~eAI~~AwE~LT~-~lgl~~~rL~vTv~ 131 (465)
T 1yfs_A 89 TFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVSVY 131 (465)
T ss_dssp SEEEEEEEEESSSCCHHHHHHHHHHHHHH-TSCCCGGGEEEEEE
T ss_pred chheeccccchhhhhHHHHHHHHHHHHHh-hcCCCHHHeEEEEe
Confidence 99999999999999999999999999999 59999999999984
No 9
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=2.7e-34 Score=342.66 Aligned_cols=142 Identities=22% Similarity=0.316 Sum_probs=119.6
Q ss_pred cccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhh-----cccc-ccCCCCCCCCce
Q psy6339 752 SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASF-----SQIL-NVGNIPYGDDSI 825 (925)
Q Consensus 752 ~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk-----~~~L-ss~~vp~~~~~l 825 (925)
+.+.||-+-+...+.||.= +.+ +. ...-+-++.+++.+.+ |.++ ++|+||+|||+|
T Consensus 33 ~r~~cgd~~c~~y~fi~~~-~~~-----~~------------~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptl 94 (752)
T 2zze_A 33 DRETCGDPPCDEYQFIGKP-GIP-----RX------------YTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDV 94 (752)
T ss_dssp TCCSCSSTTTSCCCCTTSC-SSS-----SC------------CCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSC
T ss_pred CcCCCCCCCCCCccccCCC-ccc-----cc------------CCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCe
Confidence 6788998888888888842 110 00 1122334455655554 4556 788899999999
Q ss_pred EEEcccccceeeecc-CCCCCCCCCccccccceecccccCCcccccccCCcceeeeeecccccc-----cchHHHHHHHH
Q psy6339 826 AFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMA 899 (925)
Q Consensus 826 ~f~~Agm~~~~~~~l-~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~fem~g~~sf~-----~y~k~~~i~~~ 899 (925)
||+||||+||||||+ |..+||++|++++|||||+ |||||||+|+||||||||||||||| ||||+|||+||
T Consensus 95 lftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 95 LLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp SSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred eeeecchhhhhHhhcCCCcCCCCCCccccccceec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 999999999999997 9999999999999999997 6999999999999999999999999 99999999999
Q ss_pred HHhhccCCCCCCCCcEE
Q psy6339 900 LEFLTKPPVSLPLDRLY 916 (925)
Q Consensus 900 ~~~lt~~~~~~~~~~~~ 916 (925)
|||||+ +||||++||+
T Consensus 171 we~lT~-~~gl~~~ri~ 186 (752)
T 2zze_A 171 FEFFTK-ELXMXPEDIT 186 (752)
T ss_dssp HHHHHH-TSCCCGGGEE
T ss_pred HHHHhh-hhhcchhhee
Confidence 999999 5999999996
No 10
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.95 E-value=1.1e-29 Score=303.24 Aligned_cols=141 Identities=22% Similarity=0.323 Sum_probs=116.8
Q ss_pred cccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHHHHHhhhh--cccc-ccCCCCCCCCceEEE
Q psy6339 752 SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASF--SQIL-NVGNIPYGDDSIAFV 828 (925)
Q Consensus 752 ~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk--~~~L-ss~~vp~~~~~l~f~ 828 (925)
+.+.||-+-+..-+.||.= +. .+. ....+-.+.+++.+.+ |.++ ++|+||+|||+|||+
T Consensus 36 ~r~~cgd~~c~~y~fi~~~-~~-----~~~------------~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft 97 (739)
T 2ztg_A 36 EREICGDPPCESYSFIGNP-VF-----KKP------------FELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLT 97 (739)
T ss_dssp SCCCCCSSSSCCCCCTTSC-SS-----SSC------------CCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBC
T ss_pred CcCCCCCCCCCCccccCCC-Cc-----CCC------------CCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceee
Confidence 6688887777777888842 10 011 1122333445555554 5666 788899999999999
Q ss_pred cccccceeeecc-CCCCCCCCCccccccceecccccCCcccccccCCcceeeeeecccccc-----cchHHHHHHHHHHh
Q psy6339 829 NSGMCQFKNVFL-GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEF 902 (925)
Q Consensus 829 ~Agm~~~~~~~l-~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t~fem~g~~sf~-----~y~k~~~i~~~~~~ 902 (925)
||||+||||+|+ |...||++|++++|||||. +|+||||+|.||||||||+|||||| ||||+|||+|||||
T Consensus 98 ~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~----~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~ 173 (739)
T 2ztg_A 98 IASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTEL 173 (739)
T ss_dssp CSGGGGGTTTTTTSSSCCSSSSEEEEEEEECG----GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHH
T ss_pred ecChhhCcHhHhCCCCCCCCCCcccccccccC----cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHH
Confidence 999999999997 9999999999999999998 6999999999999999999999999 99999999999999
Q ss_pred hccCCCCCCCCcEE
Q psy6339 903 LTKPPVSLPLDRLY 916 (925)
Q Consensus 903 lt~~~~~~~~~~~~ 916 (925)
| + +|||||+||.
T Consensus 174 l-~-~~g~~~~~i~ 185 (739)
T 2ztg_A 174 L-N-ELGVKKEDIV 185 (739)
T ss_dssp H-H-HHTCCGGGCE
T ss_pred H-H-HhCCCHHHee
Confidence 9 5 4999999984
No 11
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.93 E-value=3e-27 Score=283.81 Aligned_cols=255 Identities=13% Similarity=0.173 Sum_probs=205.6
Q ss_pred eCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCC
Q psy6339 611 LEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETL 689 (925)
Q Consensus 611 ~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~l 689 (925)
.+|.+++.- .++..+.+|...-..+.+-..+.+|||+|||++|+++++ .+..|.|+.+ ++++|+||++ +.++
T Consensus 42 vng~~~dl~-----~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~-~~~~ 114 (645)
T 1nyr_A 42 FNGQLVDLT-----KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDI-DQNI 114 (645)
T ss_dssp ETTEEECTT-----SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEEC-SSCC
T ss_pred ECCEEEeCC-----cccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecC-CCCC
Confidence 467666421 356666677765455567789999999999999999999 6777889887 9999999996 4689
Q ss_pred CHHHHHHHHHHHHHHHHccCCeeEEEcCccccccccccc----cccCCcCC--CcEEEEEeCCCCCcccccccCCCCCCC
Q psy6339 690 SVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLT----VIPGEIYP--DDVILIDISDKENVISREPCCGTHVFN 763 (925)
Q Consensus 690 s~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~----~l~geky~--~~vRVV~Ig~~~~~~~~elCGGTHV~n 763 (925)
|++++.+||+.||++|++|+||++.+++++||.+.++-. .+... .| +.+|||+||+ + .++||||||+|
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~-~~~~~~vrv~~~g~----~-~dlC~G~Hv~~ 188 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA-IPEDENVTLYSQGD----F-TDLCRGVHVPS 188 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCC-CSSSCCCEEEEETT----E-EEECCSCCCSC
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhc-CCCCCeeEEEEECC----E-EEecCCcccCC
Confidence 999999999999999999999999999999997765410 01111 12 3689999999 5 89999999999
Q ss_pred CCCcccEEEEeeee-------cCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEccccccee
Q psy6339 764 TGHIESCTVIGYKS-------YNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFK 836 (925)
Q Consensus 764 TgeIG~fkI~~~~~-------~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm~~~~ 836 (925)
||+||.|+|++.++ .++.++||++++.+.. +.+...-+.+.++.+.++... .+ +.+||++...+.++-
T Consensus 189 Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~-~~l~~~~~~l~ea~~rdhr~l---g~-~l~l~~~~~~~~~G~ 263 (645)
T 1nyr_A 189 TAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK-KELKAHLQMLEERKERDHRKI---GK-ELELFTNSQLVGAGL 263 (645)
T ss_dssp GGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH-HHHHHHHHHHHHHHHTCHHHH---HH-HTTCEEEETTTEEEE
T ss_pred CCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCH-HHhhhhhhhhhhhhhhhHHHH---hh-hcceEEecccCCCce
Confidence 99999999999974 5788999999999874 466666677777765544432 32 456888887668999
Q ss_pred eeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecccc
Q psy6339 837 NVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 837 ~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~s 886 (925)
++|+|.+...+ ..++..+|...+..++++|-+ ..-+..+|+.+|||.
T Consensus 264 ~~~lP~g~~~~---~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d 311 (645)
T 1nyr_A 264 PLWLPNGATIR---REIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWD 311 (645)
T ss_dssp EEECHHHHHHH---HHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHH
T ss_pred eEECCCHHHHH---HHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCcc
Confidence 99999987776 677788888888899999999 788999999999994
No 12
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.93 E-value=6.6e-27 Score=280.31 Aligned_cols=255 Identities=14% Similarity=0.099 Sum_probs=198.4
Q ss_pred EeCCEEEEEEEeecccccCCCCeEEEEEchh-chHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCC
Q psy6339 610 SLEGKIVHFGNVVSSFKVTPGLTSRVEVDAR-MRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGE 687 (925)
Q Consensus 610 k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~-rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~ 687 (925)
+.+|.+++.- .++..+.+|. -|+++ .+-..+.+|||+|||++|+++++ ..-.+.|+.+ ++++|+||++ ..
T Consensus 39 ~vng~~~dl~-----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i-~~gfy~Df~~-~~ 110 (642)
T 1qf6_A 39 RVNGELVDAC-----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVI-DNGFYYDVDL-DR 110 (642)
T ss_dssp EETTEEEETT-----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEE-TTEEEEEEEC-SS
T ss_pred EECCEEeccc-----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCcc-CCeeEEEEeC-CC
Confidence 3477766532 2455555555 45555 56789999999999999999999 4233678876 4889999996 46
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccc------cccc-CCcCC-CcEEEEEeCCCCCcccccccCCC
Q psy6339 688 TLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHL------TVIP-GEIYP-DDVILIDISDKENVISREPCCGT 759 (925)
Q Consensus 688 ~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~------~~l~-geky~-~~vRVV~Ig~~~~~~~~elCGGT 759 (925)
++|++++.+||+.||++|++|+||++.+++++||.+.+.. ..+. ++.++ +.+|||+||+ + .++||||
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~----~-~dlC~Gp 185 (642)
T 1qf6_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGP 185 (642)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT----E-EECCSSC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECC----E-EEecCCC
Confidence 8999999999999999999999999999999999776432 0111 12222 3689999999 5 7999999
Q ss_pred CCCCCCCcccEEEEeeee-------cCCCeEEEEEEcchhHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEcccc
Q psy6339 760 HVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGM 832 (925)
Q Consensus 760 HV~nTgeIG~fkI~~~~~-------~~~GvrRI~~vtG~~A~~~~~~~eeIL~elsk~~~Lss~~vp~~~~~l~f~~Agm 832 (925)
||+|||+||.|+|+++++ .+..++||++++.+. .+.+....+.+.++....+... .+ ..++|++.. .
T Consensus 186 Hv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~-~~~l~~~~~~~eea~~rdH~~l---g~-~l~l~~~~~-~ 259 (642)
T 1qf6_A 186 HVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWAD-KKALNAYLQRLEEAAKRDHRKI---GK-QLDLYHMQE-E 259 (642)
T ss_dssp CCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSS-HHHHHHHHHHHHHHHTTCHHHH---HH-HTTCEECCT-T
T ss_pred ccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCc-hhHHhhhhhhhhccccCCHHHH---HH-hcCcccccc-C
Confidence 999999999999999988 367799999999876 4556566666666654433322 22 345777774 5
Q ss_pred cceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecccc
Q psy6339 833 CQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 833 ~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~s 886 (925)
.++-++|+|.+...+ ..++..+|...+..++++|-+ ...+..+|+.+|||.
T Consensus 260 ~~G~~~~lP~g~~l~---~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~ 311 (642)
T 1qf6_A 260 APGMVFWHNDGWTIF---RELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWD 311 (642)
T ss_dssp STTCCEECHHHHHHH---HHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHH
T ss_pred CCCcEEECCcHHHHH---HHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccc
Confidence 888899998887776 677888888888899999999 789999999999994
No 13
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.93 E-value=1.3e-25 Score=236.26 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=137.9
Q ss_pred EeCCEEEEEEEeecccccCCCCeEEEEEchhchH-HHHHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCC
Q psy6339 610 SLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRL-GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGET 688 (925)
Q Consensus 610 k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~-~~mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ 688 (925)
+.+|.+++. ...|..|+.|+ .|+++.+. ..|.+|||+|||++|++++++......+++.++++|+||++ +.+
T Consensus 39 kvNg~l~dL-----~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~-~~~ 111 (224)
T 1tke_A 39 RVNGELVDA-----CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDL-DRT 111 (224)
T ss_dssp EETTEEEET-----TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEEC-SSC
T ss_pred EECCEEecc-----ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeC-CCC
Confidence 357877763 13677888887 47887764 89999999999999999999432212235568999999996 468
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccc------ccccCC-c-CCCcEEEEEeCCCCCcccccccCCCC
Q psy6339 689 LSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHL------TVIPGE-I-YPDDVILIDISDKENVISREPCCGTH 760 (925)
Q Consensus 689 ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~------~~l~ge-k-y~~~vRVV~Ig~~~~~~~~elCGGTH 760 (925)
+|++++++||+.||++|++|+||++.+++++||.+.+.. ..++.+ . +.+.+|||+||+ + .++|||||
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~----~-~dlC~G~H 186 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPH 186 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT----E-EEEESCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCC----E-EEECCCcC
Confidence 999999999999999999999999999999999876431 122222 2 456789999999 4 79999999
Q ss_pred CCCCCCcccEEEEeeee-------cCCCeEEEEEEcch
Q psy6339 761 VFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGD 791 (925)
Q Consensus 761 V~nTgeIG~fkI~~~~~-------~~~GvrRI~~vtG~ 791 (925)
|+|||+||.|+|++.++ .+++++|||+++.+
T Consensus 187 v~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 187 VPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp CSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred CCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 99999999999999977 37889999999864
No 14
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.92 E-value=2.6e-25 Score=221.41 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=119.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhc-ceeeccc-cccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccc
Q psy6339 644 GCMRAHTTSHLLNAALRRVLT-CTYQKSC-RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASEL 721 (925)
Q Consensus 644 ~~mr~HTAtHLL~aAL~~vl~-~v~Q~Gs-~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA 721 (925)
..|++|||+|||++|++++++ ++.|.++ .+.++++|+||+. +.++|++++++||+.||++|++|+||++.+++++||
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~-~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA 82 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 478999999999999999994 5655655 5666678888874 468999999999999999999999999999999999
Q ss_pred ccccccccccCCcCCC---cEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeee-cCCCeEEEEEEcch
Q psy6339 722 PFLTHLTVIPGEIYPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-YNHGVRSIKCLTGD 791 (925)
Q Consensus 722 ~~~~g~~~l~geky~~---~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~-~~~GvrRI~~vtG~ 791 (925)
.++++...+..+.+|+ .+|||+||+ +|.++||||||+|||+||.|+|++.++ .+++..||++..++
T Consensus 83 ~~~f~~~~~~~~~~~~~~~~vrv~~ig~----~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HHhhCccccccccCCCCCCeEEEEEECC----eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 8877654333333453 579999999 889999999999999999999999986 45666788887765
No 15
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=90.67 E-value=0.74 Score=48.80 Aligned_cols=172 Identities=21% Similarity=0.297 Sum_probs=105.4
Q ss_pred cccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCC
Q psy6339 10 VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHND 87 (925)
Q Consensus 10 ~~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnD 87 (925)
..|+-.+|-.+--+|.. ++|+.++.++.+= .|--.|-|. ||..-.|.-=+++-+|+|-|.. |+--+
T Consensus 23 ~~~~fQ~iIl~Lq~fWa-~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGe 90 (311)
T 3rf1_A 23 NAMTFSQMILNLQNYWQ-EQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGE 90 (311)
T ss_dssp GSCCHHHHHHHHHHHHH-TTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTC
T ss_pred CcCcHHHHHHHHHHHHH-HCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCC
Confidence 45788899999999999 6999999877652 234478885 7776666556899999999982 22212
Q ss_pred CCCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hc
Q psy6339 88 LSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----EL 163 (925)
Q Consensus 88 ld~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~ 163 (925)
|-- --.||.=|..+ ++=+|+. .-++.+ .+
T Consensus 91 --NPN-RLq~yyQfQVi-------------------------lKPsP~n-------------------iQeLYL~SL~al 123 (311)
T 3rf1_A 91 --NPN-RLGAYYQFQVL-------------------------IKPSPDN-------------------IQELYLKSLENL 123 (311)
T ss_dssp --CSS-CCSEEEEEEEE-------------------------EESCCTT-------------------HHHHHHHHHHHT
T ss_pred --Cch-hhhhheeeEEE-------------------------EcCCCcc-------------------HHHHHHHHHHHh
Confidence 211 22344434332 1112211 223332 36
Q ss_pred CCCC-CcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCc
Q psy6339 164 GVPR-DHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242 (925)
Q Consensus 164 Gv~~-~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ 242 (925)
||++ +|=+|| .+|| |+-=.-|--|===|+.-|+ +||=- |+=|.+ ..| + ++..-.
T Consensus 124 GId~~~HDIRF-VEDn-WEsPTLGAWGLGWEVWldG------------------MEVTQ--FTYFQQ-vGG-i-~c~pv~ 178 (311)
T 3rf1_A 124 GFDLKSHDIRF-VEDN-WESPSLGAWGLGWEVWLDG------------------MEVTQ--FTYFQQ-VGG-I-AVDLVS 178 (311)
T ss_dssp TCCGGGSCEEE-EECC-EEETTTTEEEEEEEEEETT------------------EEEEE--EEEEEE-ETT-E-ECSSCC
T ss_pred CCCccccCeeE-eccC-CCCCcccccccceEEEEcC------------------eeEee--eeeeee-eCC-c-cccccc
Confidence 7543 355677 3555 5432224445446777665 67653 333333 233 2 445566
Q ss_pred ccccchHHHHHHHHhCCCCcccc
Q psy6339 243 IDTGLGFERLVTILQNKTSTYDT 265 (925)
Q Consensus 243 IDTGmGLERl~~vlqg~~snydt 265 (925)
+.-=+||||||+.|||+.|+||.
T Consensus 179 ~EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 179 AEITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEEEHHHHHHHHTTCSSGGGS
T ss_pred eeeehhHHHHHHHHhCCCeeeec
Confidence 77789999999999999999986
No 16
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=86.98 E-value=1.1 Score=47.18 Aligned_cols=171 Identities=20% Similarity=0.314 Sum_probs=102.7
Q ss_pred ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccC-CCCCCC
Q psy6339 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVG-GKHNDL 88 (925)
Q Consensus 11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~g-GKHnDl 88 (925)
-|--.+|-.+--+|.. ++|+.++.++.+= .|--.|-|. ||..-.|.-=+++-+|+|.|.. |+--+
T Consensus 12 ~~~fQ~iIl~Lq~fWa-~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGe- 78 (298)
T 1j5w_A 12 HMYLQDVIMKLNDFWA-SKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGE- 78 (298)
T ss_dssp -CCHHHHHHHHHHHHH-HTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----C-
T ss_pred hHHHHHHHHHHHHHHH-HCCCEEEcCcccc-----------cccccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCC-
Confidence 4556788888889999 5999999877652 244578884 6665555556789999999992 11111
Q ss_pred CCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hcC
Q psy6339 89 SCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----ELG 164 (925)
Q Consensus 89 d~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~G 164 (925)
|-- --.||.=|..+=--|-.+ .-++.+ .+|
T Consensus 79 -NPN-RLq~y~QfQVilKPsP~n--------------------------------------------iQeLYL~SL~alG 112 (298)
T 1j5w_A 79 -NPN-RLQRYFQYQVIIKPSPEN--------------------------------------------SQELYLESLEYLG 112 (298)
T ss_dssp -CTT-CCSEEEEEEEEEESCCSS--------------------------------------------HHHHHHHHHHHTT
T ss_pred -Cch-hhhhheeeEEEECCCCcc--------------------------------------------HHHHHHHHHHHhC
Confidence 211 234444444422222221 222222 256
Q ss_pred CC-CCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcc
Q psy6339 165 VP-RDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYI 243 (925)
Q Consensus 165 v~-~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~I 243 (925)
|+ .+|=+|| .+|| ||-=.-|.-|===|+-.|+ +||=-. +=|.+ ..| + ++..-.+
T Consensus 113 id~~~HDIRF-VEDn-WEsPTLGAwGLGWEVWldG------------------MEITQF--TYFQQ-vGG-i-~c~pv~~ 167 (298)
T 1j5w_A 113 INLKEHDIRF-VEDN-WESPTLGAWGVGWEVWLDG------------------MEITQF--TYFQQ-IGG-I-SLKDIPL 167 (298)
T ss_dssp CCTTTSCEEE-EEEC-CEEGGGTEEEEEEEEEETT------------------EEEEEE--EEEEE-BTT-B-CCSSCCE
T ss_pred CCcccCCcee-eccC-CCCCccccccccceeeEcc------------------eeeehh--hhhhh-cCC-c-ccCccce
Confidence 53 3455677 3566 5422124555556777766 777533 33333 223 2 4555667
Q ss_pred cccchHHHHHHHHhCCCCcccc
Q psy6339 244 DTGLGFERLVTILQNKTSTYDT 265 (925)
Q Consensus 244 DTGmGLERl~~vlqg~~snydt 265 (925)
.-=+||||||+.|||+.|+||.
T Consensus 168 EITYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 168 EITYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGC
T ss_pred eecccHHHHHHHHhCCCceecc
Confidence 7789999999999999999997
No 17
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=48.04 E-value=6.4 Score=36.02 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.3
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++---++|.+ +||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~-~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACER-HLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcccEEEEEEe
Confidence 467777888899999 999999999999985
No 18
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=41.97 E-value=9.7 Score=36.19 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=45.1
Q ss_pred cEEeCCCCCCcCCCCcc---ceeccccccccc-cccCC---------CCCCCCCc---cccccccccCCCCCCCCCCCCC
Q psy6339 31 HTLVKSSPIVPYGDDSI---AFVNSGMCQFKN-VFLGL---------TPAPYPRV---ANSQKCVRVGGKHNDLSCAGRD 94 (925)
Q Consensus 31 H~~v~ssslvp~~dptl---lF~nAGM~qFk~-~flG~---------~~p~~~r~---~~~QkCiR~gGKHnDld~VG~t 94 (925)
|.+-.||-|||+.++-= +-||.+..+-+. -|+-. .+|+ ..+ ...-.|+.+||.- +
T Consensus 6 ~~~~~~~~~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe-~~vmV~~~~~~~m~fgGs~--------d 76 (133)
T 3fwu_A 6 HHHHHSSGLVPRGSHMPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPE-DLVMMTFHDSTPMHFFGST--------D 76 (133)
T ss_dssp ---------------CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCG-GGCEEEEECSCCCCBTTBC--------S
T ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCc-cEEEEEEECCceEEECCcC--------C
Confidence 45557899999865533 336666544332 12110 1222 122 1123478887642 1
Q ss_pred CCcchhhhh--hcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 95 SYHHTFFEM--LGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 95 ~rHhTfFeM--LGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
+ ..+.+. +|. .+.=-|++-.+---++|.+ .|||||+|+||.++.
T Consensus 77 P--~a~v~i~sig~--~~~e~n~~~s~~i~~~l~~-~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 77 P--VACVRVEALGG--YGPSEPEKVTSIVTAAITK-ECGIVADRIFVLYFS 122 (133)
T ss_dssp S--CEEEEEECTTC--CCTTHHHHHHHHHHHHHHH-HHCCCGGGEEEEEEC
T ss_pred C--EEEEEEEEcCC--CCHHHHHHHHHHHHHHHHH-HhCcChhhEEEEEEE
Confidence 1 122222 343 3333566667777888999 999999999999985
No 19
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=40.97 E-value=9.6 Score=34.91 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=24.7
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-.+---++|.+ .||+||+|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~-~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAE-RLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcceEEEEEEE
Confidence 455666666788988 999999999999985
No 20
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=40.68 E-value=11 Score=34.32 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 112 YYKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 112 YfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
=-|++-++-.-++|.+ .||+||+|+||++.+
T Consensus 71 eqk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 71 SEPEKVTSIVTAAITK-ECGIVADRIFVLYFS 101 (112)
T ss_dssp THHHHHHHHHHHHHHH-HHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HhCcCcceEEEEEEE
Confidence 3577788888899998 999999999999985
No 21
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=39.29 E-value=11 Score=34.95 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 114 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 114 K~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
|++-.+---++|.+ .||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~-~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTK-ELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHH-HHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCcCcCeEEEEEEE
Confidence 45555666778988 999999999999985
No 22
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=39.11 E-value=12 Score=40.22 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceec-----ccccc--c--cccccCCCC---------CCCCCccccc
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVN-----SGMCQ--F--KNVFLGLTP---------APYPRVANSQ 76 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~n-----AGM~q--F--k~~flG~~~---------p~~~r~~~~Q 76 (925)
+.|.+.+-+||. ++|-..|..--+.+.+| ++-.. |=|.+ | ++++|-+.+ .+..|+-..-
T Consensus 19 s~i~~~ir~~f~-~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig 95 (294)
T 1nnh_A 19 TKILEYMTDFFV-KEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 95 (294)
T ss_dssp HHHHHHHHHHHH-HTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHH-HCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccChHHHHHHHhhcCccceEEEE
Confidence 456777888999 58998886433333311 00000 11211 1 123332211 1357888999
Q ss_pred cccccCCCCCCCCCCCCCCCcchhhhhhccc-ccCcccHHHHHHHHHhhccc
Q psy6339 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNW-SFNDYYKRDACRMALEFLTK 127 (925)
Q Consensus 77 kCiR~gGKHnDld~VG~t~rHhTfFeMLGn~-SFgdYfK~eai~~awe~Lt~ 127 (925)
+|.|. +=+.. .|+||..=|.|++-. +|.|| .|.+..+.+++..
T Consensus 96 ~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~ 139 (294)
T 1nnh_A 96 PNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYG 139 (294)
T ss_dssp EEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 99999 31112 257999888888754 44464 6788888888765
No 23
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=37.39 E-value=12 Score=35.58 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=45.6
Q ss_pred cEEeCCCCCCcCCCCccc---eeccccc--ccccc----------ccCCCCCCCCCccc--cccccccCCCCCCCCCCCC
Q psy6339 31 HTLVKSSPIVPYGDDSIA---FVNSGMC--QFKNV----------FLGLTPAPYPRVAN--SQKCVRVGGKHNDLSCAGR 93 (925)
Q Consensus 31 H~~v~ssslvp~~dptll---F~nAGM~--qFk~~----------flG~~~p~~~r~~~--~QkCiR~gGKHnDld~VG~ 93 (925)
|.+-.||-|||+.++-=+ -||.+.. +-+.+ .+|. |+.-=++. .-.|+.+||.- |.
T Consensus 6 ~~~~~~~~~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgK--Pe~~v~V~~~~~~~m~fgGs~---dP--- 77 (133)
T 3fwt_A 6 HHHHHSSGLVPRGSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGK--PEDFVMTAFSDKTPISFQGST---AP--- 77 (133)
T ss_dssp ------------CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSC--TTCCCEEEEECSCCCCBTTBC---SS---
T ss_pred cccccccccccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCc--CcCEEEEEEECCceEEECCCC---CC---
Confidence 455578999998665332 3555543 11111 1232 22211222 23488888742 11
Q ss_pred CCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 94 DSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 94 t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
.--.. ...+|.- +.=-|++-.+-.-++|.+ .||+||+|+||.+++
T Consensus 78 -~a~v~-v~sig~~--~~e~n~~~s~~i~~~l~~-~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 78 -AAYVR-VESWGEY--APSKPKMMTPRIAAAITK-ECGIPAERIYVFYYS 122 (133)
T ss_dssp -CEEEE-EEEEECC--CTHHHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred -eEEEE-EEECCCC--CHHHHHHHHHHHHHHHHH-HhCcChhhEEEEEEE
Confidence 11111 1123543 333456666677788998 999999999999985
No 24
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=35.27 E-value=7.5 Score=39.03 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHhcCCC
Q psy6339 151 PCDEETRDIWLELGVP 166 (925)
Q Consensus 151 ~~D~E~~~iW~~~Gv~ 166 (925)
..|+||+.+|..+|+|
T Consensus 160 ~td~ea~~LL~~~g~P 175 (177)
T 3r8s_F 160 KSDEEGRALLAAFDFP 175 (177)
T ss_dssp SSHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 4799999999999987
No 25
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=34.97 E-value=15 Score=34.20 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 112 YYKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 112 YfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
=-|++-++-.-++|.+ .||+||+|+||++.+
T Consensus 71 eqk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSN-HLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHH-HHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HhCcCcceEEEEEEE
Confidence 3578888888899998 999999999999986
No 26
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=34.61 E-value=14 Score=33.62 Aligned_cols=30 Identities=13% Similarity=0.440 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++-.-++|.+ .||+||+|+||.+.+
T Consensus 72 qk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQ-NLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcccEEEEEEE
Confidence 477778888899998 999999999999986
No 27
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=34.47 E-value=13 Score=35.48 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=24.7
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-.+---++|.+ .||+||+|+||.++.
T Consensus 93 ~n~~~s~~i~~~l~~-~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 93 KNPSISAAITGCLTQ-HFKVKPERVYISFNE 122 (135)
T ss_dssp CCHHHHHHHHHHHHH-HHCCCGGGEEEEEEC
T ss_pred CCchHHHHHHHHHHH-hcccCccEEEEEecc
Confidence 355666666788998 999999999999985
No 28
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=34.45 E-value=14 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=26.3
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++-.-++|.+ .||+||+|+||++.+
T Consensus 71 qk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNT-KLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcCeEEEEEEE
Confidence 477778888888998 999999999999986
No 29
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=33.25 E-value=1e+02 Score=30.39 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=74.8
Q ss_pred cCCCCeEE-EEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy6339 627 VTPGLTSR-VEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 704 (925)
Q Consensus 627 l~~G~~V~-~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~ 704 (925)
+..|+.|+ +.+|..-|..-.-+|-|++||. +.. -.-. +=-..+|..+.+=. + .+..+-++..++-+.+-..
T Consensus 65 i~~~~kveniVfdYnG~~pErF~hraqlLlR----eeGfinft-aY~tKtpghlhlyI-h-kghttL~E~~ql~~~lS~k 137 (180)
T 2atz_A 65 ILRNDKVENIVFDYNGRNPERFYHKAQLLLR----EEGFMNFT-AYNTKTPGHLHLYV-H-KGHTELGEGERLVKTLSMK 137 (180)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHHH----HTTCCCEE-EEECSSTTCEEEEE-C-CCSEEHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEeCCCCHHHHHHHHHHHHH----HhCcceeE-eeccCCCCeEEEEE-e-cCCccHHHHHHHHHHHHHH
Confidence 45677776 6678888888889999999875 433 2211 11124677776633 3 3567788888888999999
Q ss_pred HHccCCeeEEEcCccccccccccccccCCcCC
Q psy6339 705 IANQVQVDRRHMRASELPFLTHLTVIPGEIYP 736 (925)
Q Consensus 705 I~~~~pV~~~~~~~eEA~~~~g~~~l~geky~ 736 (925)
.++.+|.+.+..|-.+.-+.+++..+|-+.|.
T Consensus 138 La~klpkeWr~fPs~dlP~~fNIltLPYevy~ 169 (180)
T 2atz_A 138 LAQGLPKEWKVFPSNEWPKEFNILALPYEVFA 169 (180)
T ss_dssp HHTTSCCCEEEESCTTSCGGGCEEECCCEEEE
T ss_pred HHhhCccceeeCCCccCChhcceeeccHHHHh
Confidence 99999999999998888778888777766553
No 30
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=32.90 E-value=15 Score=33.64 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=26.3
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++-.-++|.+ .||+||+|+||.+.+
T Consensus 72 qk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQD-TLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcccEEEEEEE
Confidence 467778888889998 999999999999986
No 31
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=32.85 E-value=15 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.650 Sum_probs=26.2
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++---++|.+ .||+||+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~-~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTK-QLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcceEEEEEEE
Confidence 467778888888998 999999999999986
No 32
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=26.89 E-value=23 Score=32.23 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 891 YKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 891 ~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
-|++-+.---++|.+ .||++|+|+||.+-
T Consensus 72 ~~~~l~~~i~~~l~~-~Lgi~~~riyI~f~ 100 (114)
T 4dh4_A 72 TNCKIAAALSAACER-HLGVPKNRIYTTFT 100 (114)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcccEEEEEE
Confidence 356677777788888 59999999999873
No 33
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=25.33 E-value=33 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 114 KRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 114 K~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
|++-++-.-+.|.+ .+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~-~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASR-LLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHH-HTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCCCcccEEEEEEE
Confidence 55666777778888 899999999999976
No 34
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.13 E-value=25 Score=27.73 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++-.-+.|.+ .||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~-~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKE-TTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcCeEEEEEEE
Confidence 466667777888888 899999999999975
No 35
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.06 E-value=26 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=25.5
Q ss_pred cHHHHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 113 YKRDACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 113 fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
-|++-++-.-+.|.+ .||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~-~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMAN-SLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHH-HHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcccEEEEEEE
Confidence 466677777888888 899999999999975
No 36
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.72 E-value=27 Score=38.44 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccc------------cccCCCC---------CCCCCccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKN------------VFLGLTP---------APYPRVAN 74 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~------------~flG~~~---------p~~~r~~~ 74 (925)
+|-+.+-+||. ++|-..|..=-|.+.. +. .|+..+|+- .+|-+.+ .-..|+-.
T Consensus 41 ~i~~~iR~ff~-~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyq 114 (345)
T 3a5y_A 41 AIMAEIRRFFA-DRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ 114 (345)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHH-HCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEE
Confidence 45566778999 5998888754444321 11 122333332 2332221 12578888
Q ss_pred cccccccCCCCCCCCCCCCCCCcchhhhhhc-ccccCcccHHHHHHHHHhhccc
Q psy6339 75 SQKCVRVGGKHNDLSCAGRDSYHHTFFEMLG-NWSFNDYYKRDACRMALEFLTK 127 (925)
Q Consensus 75 ~QkCiR~gGKHnDld~VG~t~rHhTfFeMLG-n~SFgdYfK~eai~~awe~Lt~ 127 (925)
.-+|.|.. | .|.||..=|.||= -.+|.|| ++.++.+=++|..
T Consensus 115 Ig~~FR~E----~-----~~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~ 157 (345)
T 3a5y_A 115 LCRSFRNE----E-----MGRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQ 157 (345)
T ss_dssp EEEEECCC----C-----CBTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred EEcceeCC----C-----CcccccchhheeeeeeeCCCH--HHHHHHHHHHHHH
Confidence 99999993 2 2899999999985 3467776 4444444444433
No 37
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=24.68 E-value=33 Score=34.40 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=32.1
Q ss_pred hhhhhcccccCc----ccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCC
Q psy6339 100 FFEMLGNWSFND----YYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVP 166 (925)
Q Consensus 100 fFeMLGn~SFgd----YfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~ 166 (925)
.|.=-||||||= .|=+ |+ ++.... ..|+| ||+.-.. ..|+||+.+|..+|+|
T Consensus 121 sfd~~GN~sfGi~e~~~FPE--i~--yD~~~~-i~Gmd-----I~ivtta-----~td~ea~~LL~~~g~P 176 (179)
T 1iq4_A 121 SFDGRGNYTLGIKEQLIFPE--ID--YDKVNK-VRGMD-----IVIVTTA-----NTDEEARELLALLGMP 176 (179)
T ss_dssp CBCSSSEEEEEESCGGGSTT--CC--GGGSSC-CCCEE-----EEEEESC-----SSHHHHHHHHHHHTCC
T ss_pred ccCCCceEEEecchhhcCcc--cc--ccccCC-ccCce-----EEEEeee-----CCHHHHHHHHHHcCCc
Confidence 355569999992 1210 11 333333 45555 5555432 3799999999999988
No 38
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.63 E-value=38 Score=38.34 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccc--------cccc-------c--------cccCC----CCC
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGM--------CQFK-------N--------VFLGL----TPA 67 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM--------~qFk-------~--------~flG~----~~p 67 (925)
..|.+.++++|. ++|++.|-.-.+++.. +|..+|. ..|. | +|... .+-
T Consensus 176 ~~L~~~~~~~~~-~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 176 RALINFMLDLHT-KKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHH-HTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHH-HcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 356777888888 5899998766666521 1111221 1111 1 11111 011
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCC----CcchhhhhhcccccCcc-----cHHHHHHHHHhhcccCCCCCC
Q psy6339 68 PYPRVANSQKCVRVGGKHNDLSCAGRDS----YHHTFFEMLGNWSFNDY-----YKRDACRMALEFLTKPPVSLP 133 (925)
Q Consensus 68 ~~~r~~~~QkCiR~gGKHnDld~VG~t~----rHhTfFeMLGn~SFgdY-----fK~eai~~awe~Lt~~~l~l~ 133 (925)
| -|++-.++|.|- ....-|++. |=|. |.|..-++|+.= .=+|.+.++.++|.. ||||
T Consensus 251 P-lrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~--LGL~ 316 (425)
T 2dq3_A 251 P-IYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQL--LGLP 316 (425)
T ss_dssp C-EEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHH--HTCC
T ss_pred C-eEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHHH--CCCc
Confidence 2 367778899998 332223221 3333 456677888742 225678888888864 7887
No 39
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=24.26 E-value=1.5e+02 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=38.7
Q ss_pred CcCChhhhhHhhcccCCCHHHHHHHHHHcCC----ccCHHHHHHHHHHHH
Q psy6339 435 TEISGDMAFTLYDTYGLSKNIIQELAAAKKL----TLCHEAFEQKLNELK 480 (925)
Q Consensus 435 ~~i~g~~af~LydTyGfP~dl~~~ia~e~g~----~vd~~~f~~~~~~~~ 480 (925)
+.|+++++-.++-+.|+|.+.+.+|.++... .||.++|..+|....
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 7899999999999999999988888876544 488999999886543
No 40
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=24.10 E-value=28 Score=24.15 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.4
Q ss_pred CCCCCCcCce
Q psy6339 183 GSTGPCGYSS 192 (925)
Q Consensus 183 G~~GpcGPcs 192 (925)
|+.||-|||.
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5678888883
No 41
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=21.93 E-value=33 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCcHHHHHHHHhcCCCCCc
Q psy6339 151 PCDEETRDIWLELGVPRDH 169 (925)
Q Consensus 151 ~~D~E~~~iW~~~Gv~~~~ 169 (925)
..|+||+.+|..+|+|=.+
T Consensus 176 ~td~ea~~LL~~~g~PF~~ 194 (220)
T 3bbo_H 176 KTDKEAYKLLSLMGMPFRE 194 (220)
T ss_dssp SSGGGTHHHHHTTTCCC--
T ss_pred CCHHHHHHHHHHCCCCEec
Confidence 4799999999999988443
No 42
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=21.89 E-value=33 Score=38.91 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.4
Q ss_pred CCCCcccccchHHHHHHHHhCCCCccccccc
Q psy6339 238 LSKNYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 238 Lp~k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
+| +|-=-|+|+|||+++|-|.+|.=|+=+|
T Consensus 391 ~P-P~~G~glGiDRLvmll~g~~~Irdvi~F 420 (429)
T 1wyd_A 391 MP-PHAGFGMGLARLMVMLTGIQSVKEIVPF 420 (429)
T ss_dssp CC-CEEEEEEEHHHHHHHHHCCCCGGGTSSS
T ss_pred CC-CceEEEEcHHHHHHHHcCCCcHHhEEec
Confidence 45 8888999999999999999997776444
No 43
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=21.59 E-value=34 Score=38.99 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=53.4
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccc----cccccCCCC---------CCCCCccccccccccC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQF----KNVFLGLTP---------APYPRVANSQKCVRVG 82 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qF----k~~flG~~~---------p~~~r~~~~QkCiR~g 82 (925)
+|-+.+-+||. ++|-..|..--+.+. ++.- .|-+.+| ++++|-+.+ .-..|+-..-+|.|..
T Consensus 142 ~i~~~iR~f~~-~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E 216 (438)
T 3nem_A 142 SVFKAVRDFFH-ENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE 216 (438)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHH-HCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC
Confidence 55667778999 589888854333321 1000 0001111 223333221 1357888889999993
Q ss_pred CCCCCCCCCCCCCCcchhhhhhcc-cccCc-c-----cHHHHHHHHHhh
Q psy6339 83 GKHNDLSCAGRDSYHHTFFEMLGN-WSFND-Y-----YKRDACRMALEF 124 (925)
Q Consensus 83 GKHnDld~VG~t~rHhTfFeMLGn-~SFgd-Y-----fK~eai~~awe~ 124 (925)
+ . .|.||..=|.||-- .+|.| | .-++-|..++.-
T Consensus 217 ----~---~-~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~ 257 (438)
T 3nem_A 217 ----E---H-NTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINY 257 (438)
T ss_dssp ----S---S-CCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHH
T ss_pred ----C---C-CCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHH
Confidence 2 2 26799888888764 46666 5 334555555543
No 44
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=21.38 E-value=34 Score=30.86 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 891 YKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 891 ~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
-|++-++-.-++|.+ .||++|+|+||++-
T Consensus 72 qk~~l~~~i~~~l~~-~lgi~~~~v~I~~~ 100 (112)
T 3b64_A 72 EPEKVTSIVTAAITK-ECGIVADRIFVLYF 100 (112)
T ss_dssp HHHHHHHHHHHHHHH-HHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHH-HhCcCcceEEEEEE
Confidence 467777778888887 49999999999873
No 45
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=21.17 E-value=34 Score=34.40 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=30.8
Q ss_pred hhhhhcccccCc----ccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCC
Q psy6339 100 FFEMLGNWSFND----YYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVP 166 (925)
Q Consensus 100 fFeMLGn~SFgd----YfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~ 166 (925)
.|.=-||||||= .|=+ |+ ++.... ..|+| ||+.-.. ..|+||+.+|..+|+|
T Consensus 124 sfd~~GN~sfGi~e~~~FPE--i~--yD~~~~-i~Gmd-----Itivtta-----~td~ea~~LL~~~g~P 179 (182)
T 1mji_A 124 SFDGRGNYNLGLREQLIFPE--IT--YDMVDA-LRGMD-----IAVVTTA-----ETDEEARALLELLGFP 179 (182)
T ss_dssp CBCSSSEEEEEECSCEECSS--CE--ECCTTT-SCCEE-----EEEEESC-----SSHHHHHHHHHHHTCC
T ss_pred ccCCCceEEEecchhhcCCc--cc--ccccCC-ccCce-----EEEEecc-----CCHHHHHHHHHHcCCc
Confidence 355569999992 1100 00 222222 44444 5554432 4799999999999988
No 46
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.12 E-value=35 Score=38.61 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCCCcccccchHHHHHHHHhCCCCcccccccHH
Q psy6339 238 LSKNYIDTGLGFERLVTILQNKTSTYDTDLFLP 270 (925)
Q Consensus 238 Lp~k~IDTGmGLERl~~vlqg~~snydtD~f~p 270 (925)
+| +|-=-|+|+|||+++|-|.+|.=|+=+|..
T Consensus 384 ~P-PhgG~glGiDRLvm~l~g~~~Irdvi~FPr 415 (422)
T 1n9w_A 384 MP-PHGGFAIGAERLTQKLLGLPNVRYARAFPR 415 (422)
T ss_dssp CC-SEEEEEEEHHHHHHHHTTCSSGGGGCSCC-
T ss_pred CC-CceEEEEcHHHHHHHHhCCCcHHhEEecCC
Confidence 44 777889999999999999999888766643
No 47
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=21.12 E-value=34 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 892 KRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 892 k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|++-...--++|.+ .||++|+|+||.+-
T Consensus 94 n~~~s~~i~~~l~~-~LgI~~~riyI~f~ 121 (133)
T 3fwu_A 94 PEKVTSIVTAAITK-ECGIVADRIFVLYF 121 (133)
T ss_dssp HHHHHHHHHHHHHH-HHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCcChhhEEEEEE
Confidence 45555666778887 49999999999873
No 48
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.01 E-value=2e+02 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCcCChhhhhHhhcccCCCHHHHHHHHHHcCC----ccCHHHHHHHHHHH
Q psy6339 434 ITEISGDMAFTLYDTYGLSKNIIQELAAAKKL----TLCHEAFEQKLNEL 479 (925)
Q Consensus 434 ~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~----~vd~~~f~~~~~~~ 479 (925)
.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|...|...
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 37899999999999999999988888877543 48889999988654
No 49
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=20.67 E-value=36 Score=38.95 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=47.9
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcC---CCCccceeccccccc-cccccCCCCC--------CCCCccccccccccCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPY---GDDSIAFVNSGMCQF-KNVFLGLTPA--------PYPRVANSQKCVRVGG 83 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~---~dptllF~nAGM~qF-k~~flG~~~p--------~~~r~~~~QkCiR~gG 83 (925)
+|-+.+-+||. ++|-..|..=-+.+. .-.. +|. .+-| ++++|-+.+- ...|+-..-+|.|..
T Consensus 161 ~i~~~iR~ff~-~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E- 234 (456)
T 3m4p_A 161 EIQWYFRKYYH-DNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE- 234 (456)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC-
T ss_pred HHHHHHHHHHH-hCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC-
Confidence 45566778999 589888854333221 1111 121 1112 2234443321 147888888999983
Q ss_pred CCCCCCCCCCCCCcchhhhhhcc-cccCcc
Q psy6339 84 KHNDLSCAGRDSYHHTFFEMLGN-WSFNDY 112 (925)
Q Consensus 84 KHnDld~VG~t~rHhTfFeMLGn-~SFgdY 112 (925)
+ -.|.||..=|.||-- .+|.||
T Consensus 235 ---~----~~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 ---Q----SRTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp ---S----CCCSSCCSEEEEEEEEEESCCH
T ss_pred ---C----CCCCcchHHHHHhHHHHhcCCH
Confidence 2 247899888888754 466776
No 50
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=20.65 E-value=36 Score=39.64 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccc--------ccccCCCCC---------CCCCccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFK--------NVFLGLTPA---------PYPRVANSQKC 78 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk--------~~flG~~~p---------~~~r~~~~QkC 78 (925)
+|-+.+-+||. ++|-..|..--|.+.. ..|+--+|. +++|-+.+- -..|+-..-+|
T Consensus 181 ~i~~~iR~f~~-~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~ 253 (521)
T 3bju_A 181 KIITYIRSFLD-ELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQ 253 (521)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHH-HCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcc
Confidence 34456778999 5898888654444321 112222221 234443321 25788888999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhhc-ccccCcc-----cHHHHHHHHHhhccc
Q psy6339 79 VRVGGKHNDLSCAGRDSYHHTFFEMLG-NWSFNDY-----YKRDACRMALEFLTK 127 (925)
Q Consensus 79 iR~gGKHnDld~VG~t~rHhTfFeMLG-n~SFgdY-----fK~eai~~awe~Lt~ 127 (925)
.|.- + .+.||..=|.||= -.+|.|| .-++-|.++|.-+.+
T Consensus 254 FR~E-------~--~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~ 299 (521)
T 3bju_A 254 FRNE-------G--IDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITG 299 (521)
T ss_dssp ECCS-------C--CBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeCC-------C--CCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9993 2 3349999998875 4678887 345667777765543
No 51
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.60 E-value=1.7e+02 Score=27.31 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCcCChhhhhHhhcccCCCHHHHHHHHHHcCC----ccCHHHHHHHHHHHH
Q psy6339 434 ITEISGDMAFTLYDTYGLSKNIIQELAAAKKL----TLCHEAFEQKLNELK 480 (925)
Q Consensus 434 ~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~----~vd~~~f~~~~~~~~ 480 (925)
.+.|+|++|-.++-.-|+|.+....|-+.... .+|.++|..+|.--.
T Consensus 46 dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~ 96 (121)
T 3fia_A 46 SGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIK 96 (121)
T ss_dssp TTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred CCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 37899999999999999999999988776544 578899998886543
No 52
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.06 E-value=37 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.554 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 892 KRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 892 k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
|++-++-.-++|.+ .||++|+|+||++-
T Consensus 73 k~~l~~~i~~~l~~-~lgi~~~~v~I~~~ 100 (115)
T 2xcz_A 73 TQEVSELVCGHIEQ-NLGIPADRIYIGFE 100 (115)
T ss_dssp HHHHHHHHHHHHHH-HHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCcCcccEEEEEE
Confidence 67777788888887 49999999999873
No 53
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=20.04 E-value=38 Score=39.74 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=47.5
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccc------ccccCCCC---------CCCCCccccccccc
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFK------NVFLGLTP---------APYPRVANSQKCVR 80 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk------~~flG~~~---------p~~~r~~~~QkCiR 80 (925)
+|-+.+-+||. ++|-..|..--|.+. ++ .+|-..|+ +++|-+.+ .-..|+-..-+|.|
T Consensus 249 ~i~~~iR~ff~-~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 249 ACCGLFREFLT-SQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 45556678999 589888865445442 11 12333342 23343322 12577878899999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhccc-ccC-cc
Q psy6339 81 VGGKHNDLSCAGRDSYHHTFFEMLGNW-SFN-DY 112 (925)
Q Consensus 81 ~gGKHnDld~VG~t~rHhTfFeMLGn~-SFg-dY 112 (925)
.. + -.|.||.+=|.||--. +|+ ||
T Consensus 322 ~E----~----~~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 AE----N----SNTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CS----C----CCSSSCCSCEEEEEEEEECSSCT
T ss_pred cC----C----CCCCCcchhhhchhhhhhhhcCH
Confidence 93 2 2378999999999765 787 56
Done!