Query psy6339
Match_columns 925
No_of_seqs 443 out of 2318
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 23:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1riqa2 d.104.1.1 (A:1-236) Al 100.0 2E-110 2E-114 865.4 8.6 235 11-263 1-236 (236)
2 d1riqa1 a.203.1.1 (A:237-457) 100.0 1.2E-52 8.6E-57 436.4 10.5 189 264-489 1-194 (221)
3 d1riqa2 d.104.1.1 (A:1-236) Al 100.0 2.8E-42 2.1E-46 355.8 5.4 119 801-920 9-130 (236)
4 d2e1ba2 d.67.1.2 (A:88-216) Al 100.0 5E-31 3.6E-35 252.7 14.5 125 638-788 1-127 (129)
5 d1v4pa_ d.67.1.2 (A:) Hypothet 100.0 2.4E-29 1.8E-33 247.0 14.8 140 644-788 4-149 (151)
6 d1nyra3 d.67.1.1 (A:63-241) Th 99.9 9.6E-27 7E-31 234.6 14.5 162 638-808 3-177 (179)
7 d1tkea2 d.67.1.1 (A:63-224) Th 99.8 9.6E-21 7E-25 187.2 12.7 139 646-790 8-161 (162)
8 d2e1ba1 b.43.3.6 (A:1-87) AlaX 99.5 1.3E-15 9.2E-20 135.2 2.1 58 569-637 29-87 (87)
9 d1j5wa_ d.104.1.1 (A:) Glycyl- 95.7 0.0086 6.2E-07 60.6 7.3 168 12-265 1-177 (281)
10 d1jjca_ d.104.1.1 (A:) Phenyl- 76.8 0.18 1.3E-05 51.5 -0.9 26 13-39 18-43 (266)
11 d1u9pa1 a.43.1.1 (A:72-107) Ar 62.7 2.3 0.00017 28.9 2.6 28 453-480 4-31 (36)
12 d1qf6a4 d.104.1.1 (A:242-532) 41.4 0.22 1.6E-05 51.3 -8.4 61 822-886 9-70 (291)
13 d1dpta_ d.80.1.3 (A:) D-dopach 39.1 5 0.00036 35.0 1.6 26 117-143 76-101 (117)
14 d1uiza_ d.80.1.3 (A:) Micropha 38.9 5.1 0.00037 34.9 1.6 27 116-143 75-101 (115)
15 d2zjrd1 d.77.1.1 (D:3-179) Rib 37.5 13 0.00095 34.8 4.4 54 99-167 118-175 (177)
16 d2gdga1 d.80.1.3 (A:1-114) Mic 34.1 7 0.00051 33.9 1.7 56 74-143 42-100 (114)
17 d1hfoa_ d.80.1.3 (A:) Micropha 33.9 7.1 0.00052 33.8 1.7 25 118-143 76-100 (113)
18 d1nnha_ d.104.1.1 (A:) Hypothe 31.9 8.2 0.00059 39.0 2.0 30 238-268 254-283 (293)
19 d1nyra4 d.104.1.1 (A:242-532) 30.0 0.62 4.5E-05 47.8 -7.2 62 823-887 9-71 (291)
20 d1e1oa2 d.104.1.1 (A:161-502) 29.6 9.3 0.00067 39.2 2.0 99 16-125 28-144 (342)
21 d1c0aa3 d.104.1.1 (A:107-287,A 29.2 9.5 0.00069 39.3 2.0 23 246-268 293-315 (346)
22 d1l0wa3 d.104.1.1 (A:105-294,A 26.3 11 0.00084 38.8 2.0 80 15-105 44-135 (356)
23 d1n9wa2 d.104.1.1 (A:111-414) 26.2 12 0.00086 37.6 2.0 28 241-268 276-303 (304)
24 d2atza1 d.264.1.3 (A:3-178) Hy 24.9 1.2E+02 0.009 27.3 8.5 103 627-736 63-167 (176)
25 d1eova2 d.104.1.1 (A:205-557) 24.3 13 0.00096 38.1 2.0 28 241-268 317-344 (353)
26 d1b8aa2 d.104.1.1 (A:104-438) 22.2 15 0.0011 37.2 2.0 84 16-110 39-134 (335)
27 d1iq4a_ d.77.1.1 (A:) Ribosoma 21.2 9.6 0.0007 35.9 0.1 56 99-167 120-177 (179)
28 d1uiza_ d.80.1.3 (A:) Micropha 20.5 17 0.0012 31.3 1.6 24 895-919 76-99 (115)
29 d1g5ha2 d.104.1.1 (A:41-330) T 20.2 32 0.0023 34.3 3.9 26 230-256 258-284 (290)
No 1
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=2.4e-110 Score=865.37 Aligned_cols=235 Identities=49% Similarity=0.884 Sum_probs=228.1
Q ss_pred ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCC
Q psy6339 11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSC 90 (925)
Q Consensus 11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~ 90 (925)
.|+++|||++||+||+ +|||++||||||||+||||||||||||+||||||+|+++||++|+|++|||||+|||||||||
T Consensus 1 ~mt~~eiR~~Fl~FF~-~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~ 79 (236)
T d1riqa2 1 SLSAHEIRELFLSFFE-KKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ 79 (236)
T ss_dssp CCCHHHHHHHHHHHHH-HTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTT
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhh
Confidence 4899999999999999 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCCc
Q psy6339 91 AGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDH 169 (925)
Q Consensus 91 VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~~ 169 (925)
||+|+|||||||||||||||||||+|||.|||||||+ +|||||+|||||||++ |+||+++|.+ +|||++|
T Consensus 80 VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~-~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~~~r 150 (236)
T d1riqa2 80 VGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPSER 150 (236)
T ss_dssp TTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHH-TSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCGGG
T ss_pred cCCcccchhhhhhccccccCchhHHHHHHHHHHHHHH-HhccCccceEEEeecC--------cHHHHHHHHhhcCccccc
Confidence 9999999999999999999999999999999999999 9999999999999984 8999999986 8999999
Q ss_pred ccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchH
Q psy6339 170 IKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249 (925)
Q Consensus 170 I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGL 249 (925)
|++++.+||||+||++||||||||||||+|+.+ ++++|||||||||||||+|+++|++.|||+|+|||||||
T Consensus 151 I~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~--------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGL 222 (236)
T d1riqa2 151 IWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGL 222 (236)
T ss_dssp EEEECHHHHEEESSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEH
T ss_pred ceecCCCCCccccCCCCCCCcceeEEEcccccc--------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCccH
Confidence 999999999999999999999999999998764 245799999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcc
Q psy6339 250 ERLVTILQNKTSTY 263 (925)
Q Consensus 250 ERl~~vlqg~~sny 263 (925)
|||||||||++|||
T Consensus 223 ERi~~vlqg~~s~y 236 (236)
T d1riqa2 223 ERIASVLQGKNSNF 236 (236)
T ss_dssp HHHHHHHTTCSSGG
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999999998
No 2
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=1.2e-52 Score=436.43 Aligned_cols=189 Identities=28% Similarity=0.467 Sum_probs=167.6
Q ss_pred cccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHh
Q psy6339 264 DTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDV 340 (925)
Q Consensus 264 dtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~ 340 (925)
|||+|.|||++|++++|++ |... ...++||||||||+||++|||+|||+|||+ ||||||||||+|+++++
T Consensus 1 etDlf~pii~~i~~~~~~~-Y~~~------~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~l 73 (221)
T d1riqa1 1 EIDIIFPLIQFGEEVSGKK-YGEK------FETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKL 73 (221)
T ss_dssp GSTTTHHHHHHHHHHHTCC-TTSC------HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHHHhCCC-cCcC------cccCceeehhHHHHHHHHHHHhcCCCCCcCCCchHHHHHHHHHHHHHHHh
Confidence 7999999999999999985 6321 335789999999999999999999999999 59999999999999987
Q ss_pred hccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhH
Q psy6339 341 FKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLG 420 (925)
Q Consensus 341 ~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 420 (925)
+... +||++||+.|++.|++.||||.++++.|.+||+.||++|.+|++ +|
T Consensus 74 g~~~--~~l~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl~----------------------------~G 123 (221)
T d1riqa1 74 GIEN--PFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLK----------------------------AG 123 (221)
T ss_dssp TCCS--CCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH
T ss_pred cccc--chhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHH----------------------------HH
Confidence 6555 89999999999999999999999999999999999999998854 57
Q ss_pred HHHHHHHHhcCC--CCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcC
Q psy6339 421 VKYLTKQLARDP--SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAAS 489 (925)
Q Consensus 421 ~~~l~~~~~~~~--~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~~~~~ 489 (925)
+++|++.+++.. +++.|||++||+||||||||+|||++||+++|++||+++|+++|++||++||++++.
T Consensus 124 ~~~~~~~i~~~~~~~~~~l~g~~af~LydTyGfP~elt~eia~e~gl~vD~~gF~~~m~eqre~Sr~a~k~ 194 (221)
T d1riqa1 124 MEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKV 194 (221)
T ss_dssp HHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHccccCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 777777665421 236899999999999999999999999999999999999999999999999977653
No 3
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=2.8e-42 Score=355.80 Aligned_cols=119 Identities=46% Similarity=0.795 Sum_probs=110.3
Q ss_pred HHHHHhhhh--cccc-ccCCCCCCCCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccccCCcce
Q psy6339 801 KHLSTAASF--SQIL-NVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877 (925)
Q Consensus 801 eeIL~elsk--~~~L-ss~~vp~~~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~~~~h~t 877 (925)
+..++.+.+ |.++ ++|+||+|||+|+||||||+||||||+|...||++|++++|||||+++||||+|+||+|+||||
T Consensus 9 ~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~VG~t~rH~T 88 (236)
T d1riqa2 9 ELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 88 (236)
T ss_dssp HHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTTTTSSSCCS
T ss_pred HHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhhcCCcccchh
Confidence 344444544 5666 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccccccchHHHHHHHHHHhhccCCCCCCCCcEEEEEe
Q psy6339 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFP 920 (925)
Q Consensus 878 ~fem~g~~sf~~y~k~~~i~~~~~~lt~~~~~~~~~~~~~t~~ 920 (925)
||||+||||||||||+|||.|||||||+ +|||||+||||||-
T Consensus 89 fFEMLGn~SFgdYfK~eai~~awe~lt~-~l~l~~~rl~vtv~ 130 (236)
T d1riqa2 89 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVSVY 130 (236)
T ss_dssp EEEEEEEEESSSCCHHHHHHHHHHHHHH-TSCCCGGGEEEEEE
T ss_pred hhhhccccccCchhHHHHHHHHHHHHHH-HhccCccceEEEee
Confidence 9999999999999999999999999999 69999999999984
No 4
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.97 E-value=5e-31 Score=252.67 Aligned_cols=125 Identities=24% Similarity=0.283 Sum_probs=112.3
Q ss_pred chhchHHHHHHhHHHHHHHHHHHHhh-cceee-ccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEE
Q psy6339 638 DARMRLGCMRAHTTSHLLNAALRRVL-TCTYQ-KSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRH 715 (925)
Q Consensus 638 D~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q-~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~ 715 (925)
||+||+.+||+|||+|||++||++++ .+.+| .|+++.++++|+||++ +..+++ ++++||+.+|++|.++.||.+.+
T Consensus 1 Dw~rR~~~mr~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~-~~~l~~-~~~~ie~~~n~~I~~~~~v~~~~ 78 (129)
T d2e1ba2 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY-PENLNK-YKEQIISLFNKYVDEGGEVKIWW 78 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEEC-SSCGGG-GHHHHHHHHHHHHHHCCBEEEEE
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccccccccccceEEEEEec-ccccch-HHHHHHHHHHHHHHhccchhhhh
Confidence 89999999999999999999999999 66555 7999999999999996 456664 45899999999999999998654
Q ss_pred cCccccccccccccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEE
Q psy6339 716 MRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 788 (925)
Q Consensus 716 ~~~eEA~~~~g~~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~v 788 (925)
. +.+|+|+|++ ++.+|||||||.||++||.|+|++.+++++|++||++.
T Consensus 79 ~--------------------~~~Riv~I~~----~d~~~CgGTHV~~T~eIg~i~I~~~~~~gkg~~RI~~~ 127 (129)
T d2e1ba2 79 E--------------------GDRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 127 (129)
T ss_dssp S--------------------SSCEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred c--------------------ccceEEEecc----ccccccCCCCCcchhhCccEEEEEEEEEeCCcEEEEEE
Confidence 1 2358999999 99999999999999999999999999999999999985
No 5
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.96 E-value=2.4e-29 Score=246.99 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=123.3
Q ss_pred HHHHHhHHHHHHHHHHHHhh-ccee-eccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccc
Q psy6339 644 GCMRAHTTSHLLNAALRRVL-TCTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASEL 721 (925)
Q Consensus 644 ~~mr~HTAtHLL~aAL~~vl-~~v~-Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA 721 (925)
.+||+|||+|||++|++++| +++. +.|+++.++..++||+. +..++++++.+||+.||++|++|.||++.+++++||
T Consensus 4 ~~mR~HTa~HlL~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~-~~~~t~e~l~~iE~~~n~~I~~~~~v~~~~~~~~ea 82 (151)
T d1v4pa_ 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred ccHHHhHHHHHHHHHHHHHhCcCceeeeeceecCCccEEEEec-cccchhHHHHHHHHHHHHhhhcccccceEEeecccc
Confidence 57999999999999999999 6554 45678899999999985 578999999999999999999999999999999999
Q ss_pred ccccccccccCCcCCC---cEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeee-ecCCCeEEEEEE
Q psy6339 722 PFLTHLTVIPGEIYPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYK-SYNHGVRSIKCL 788 (925)
Q Consensus 722 ~~~~g~~~l~geky~~---~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~-~~~~GvrRI~~v 788 (925)
.+.+|........+|+ .+|+|+|++ +|.+|||||||+|||+||.|+|++.+ ++++|++||+|-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~iriv~i~~----~d~~~CgGTHV~~T~eIg~~kI~~~~~~~~kg~~Ri~f~ 149 (151)
T d1v4pa_ 83 EKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFE 149 (151)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEE
T ss_pred cccccccccccccCCccccceEEEeecC----ceeeCCCCCccCChhhceeEEEEEEEeeccCCcEEEEEE
Confidence 8877765555455554 368999999 89999999999999999999999987 678999999984
No 6
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.94 E-value=9.6e-27 Score=234.57 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=132.1
Q ss_pred chhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEc
Q psy6339 638 DARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHM 716 (925)
Q Consensus 638 D~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~ 716 (925)
|-+.++.++ +|||+|||++||+++| .+..|.|+.+ ++++||||++ ..++|+++|.+||+.||++|.+++||+..++
T Consensus 3 ~~~~~l~i~-~HSathlL~~Al~~~~~~~~~~~G~~~-~~gf~~Df~~-~~~lt~edl~~IE~~m~~iI~~~~~i~~~~~ 79 (179)
T d1nyra3 3 GSEEALEVL-RHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDI-DQNISSDDFEQIEKTMKQIVNENMKIERKVV 79 (179)
T ss_dssp TSHHHHHHH-HHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEEC-SSCCCSTTHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCHHHHHHH-hHhHHHHHHHHHHHHCCCcEEEEeeee-ccceEEEEee-cccCCHHHHHHHHHHHHHHHHhhcceEEEEc
Confidence 445556665 5999999999999999 7888889876 6899999997 5799999999999999999999999999999
Q ss_pred Ccccccccccc----ccccCCcCCC-cEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeec-------CCCeEE
Q psy6339 717 RASELPFLTHL----TVIPGEIYPD-DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRS 784 (925)
Q Consensus 717 ~~eEA~~~~g~----~~l~geky~~-~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~-------~~GvrR 784 (925)
++++|.++++- ..+.++.+.+ .++|+++|+ ++++||||||+|||+||.|+|+++++. .++++|
T Consensus 80 ~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~-----~~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~r 154 (179)
T d1nyra3 80 SRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGD-----FTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQR 154 (179)
T ss_dssp TTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETT-----EEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEE
T ss_pred CHHHHHHHhccCccceehhhhcCCCCcEEEEeeCC-----EEEecCCCCCccccccCceEEEEeecccccCccchhheee
Confidence 99999876431 2334455554 467999998 689999999999999999999999875 456788
Q ss_pred EEEEcchhHHHHHHHHHHHHHhhh
Q psy6339 785 IKCLTGDSSKAAVENGKHLSTAAS 808 (925)
Q Consensus 785 I~~vtG~~A~~~~~~~eeIL~els 808 (925)
|++++.+. .+.+.+..+.++++.
T Consensus 155 i~G~a~~~-~~~L~~~l~~leEa~ 177 (179)
T d1nyra3 155 IYGTAFFD-KKELKAHLQMLEERK 177 (179)
T ss_dssp EEEEEESS-HHHHHHHHHHHHHHH
T ss_pred eHhhccCC-HHHHHHHHHHHHHHh
Confidence 98888765 355555556666554
No 7
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=9.6e-21 Score=187.23 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=118.1
Q ss_pred HHHhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccc
Q psy6339 646 MRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLT 725 (925)
Q Consensus 646 mr~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~ 725 (925)
.-+||++|||++|++++++++.+.+++..++++|+||+. ..+++.+++.+||+.|+++|.++.|+....+++++|.+.+
T Consensus 8 v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~~GfyyD~~~-~~~~~~edl~~ie~~m~~ii~~~~~~~~~~~s~~~a~~~~ 86 (162)
T d1tkea2 8 IIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF 86 (162)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEeccccCCeEEEEeec-cCCCCHHHHHHHHHHHHHHHHhcCCceEEEechHHHHHHH
Confidence 458999999999999988888888888999999999996 5789999999999999999999999999999999997654
Q ss_pred cccccc------CCcC--CCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeec-------CCCeEEEEEEcc
Q psy6339 726 HLTVIP------GEIY--PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTG 790 (925)
Q Consensus 726 g~~~l~------geky--~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~-------~~GvrRI~~vtG 790 (925)
...... .... ...+.++++|+ ..++|+||||+|||.|+.|+|+++++. +++++||+++|.
T Consensus 87 ~~~~~~~k~~~~~~~~~~~~~~~~y~~g~-----~~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiyg~af 161 (162)
T d1tkea2 87 ANRGESYKVSILDENIAHDDKPGLYFHEE-----YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 161 (162)
T ss_dssp HHTTCHHHHHHHHHHSCTTCCCEEEEETT-----EEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred HHhhcchhhheeeccccccccceeeccCc-----eEeecCCCccccCcccceEEEEEechhhcCCCCCCcccEEEEEEEe
Confidence 321111 0011 12456899998 789999999999999999999999884 788999999985
No 8
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.51 E-value=1.3e-15 Score=135.19 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=50.5
Q ss_pred EEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEe-CCEEEEEEEeecccccCCCCeEEEEE
Q psy6339 569 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL-EGKIVHFGNVVSSFKVTPGLTSRVEV 637 (925)
Q Consensus 569 ~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~-~g~ivH~~~~~~~~~l~~G~~V~~~V 637 (925)
.|+||+|+|||||||||+|+|+|. .++|.+|++. ++.|+|.+.. .+.|++|++|.++|
T Consensus 29 ~vild~T~FYpegGGQ~~D~G~i~---------~~~V~~v~k~~~~~i~H~~~~--~~~l~vGd~V~~~I 87 (87)
T d2e1ba1 29 AILLDQTIFYPTGGGQPHDRGTIN---------GVEVLDVYKDEEGNVWHVVKE--PEKFKVGDEVELKI 87 (87)
T ss_dssp CCCBSCCCSCCCCTTCCCCCEEET---------TEEEEEEECCTTCCCEEEESC--GGGCCSSSCEEEEE
T ss_pred EEEEeccccccCCCCCCCCEEEEe---------eEEEEEEEEeCCCEEEEEecC--CCCCCCCCEEEEEC
Confidence 599999999999999999999993 3689999875 6789998863 35799999999986
No 9
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=95.65 E-value=0.0086 Score=60.62 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=105.5
Q ss_pred cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceecccccccccc-ccCCCCCCCCCccccccccccCCCCCCC--
Q psy6339 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNV-FLGLTPAPYPRVANSQKCVRVGGKHNDL-- 88 (925)
Q Consensus 12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~-flG~~~p~~~r~~~~QkCiR~gGKHnDl-- 88 (925)
|+-.+|-.+--+|.. ++|+.++.++.+= +.| -.|-|. |+..-.|.--+++-+|+|.|. .|=
T Consensus 1 m~fq~~i~~L~~~W~-~~gC~i~qpyd~e---------vGA--gT~~p~T~lr~lgp~pw~~ayvqpsrRP----~DgRY 64 (281)
T d1j5wa_ 1 MYLQDVIMKLNDFWA-SKGCLLEQPYDME---------VGA--GTFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRY 64 (281)
T ss_dssp CCHHHHHHHHHHHHH-HTTCEECCCCSSC---------CSS--GGGSHHHHTGGGCSSCEEEEEEEEEECC----C----
T ss_pred CcHHHHHHHHHHHHH-HCCCEEECCcccc---------ccc--ccCChHHHHhhcCCCCccccccccccCC----ccccc
Confidence 556778888889999 5999998877652 234 478884 666655554678999999999 342
Q ss_pred -CCCCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHH----hc
Q psy6339 89 -SCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWL----EL 163 (925)
Q Consensus 89 -d~VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~----~~ 163 (925)
+|-- --.||.=|..+=--|..+ .-++.. .+
T Consensus 65 g~NPN-Rlq~y~QfQVi~KPsp~n--------------------------------------------~q~lyL~SL~~i 99 (281)
T d1j5wa_ 65 GENPN-RLQRYFQYQVIIKPSPEN--------------------------------------------SQELYLESLEYL 99 (281)
T ss_dssp -CCTT-CCSEEEEEEEEEESCCSS--------------------------------------------HHHHHHHHHHHT
T ss_pred cCCcc-hhhhhhheeeeecCCccc--------------------------------------------HHHHHHHHHHHc
Confidence 3322 245665565543333332 222221 24
Q ss_pred CCCC-CcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCc
Q psy6339 164 GVPR-DHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNY 242 (925)
Q Consensus 164 Gv~~-~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~ 242 (925)
||+. +|=+|| .+|| |+--.-|.-|-==|+-.|+ +||=-. +=|.+ ..| + ++....
T Consensus 100 gid~~~hDIrf-vEDn-WEsPtlGAwGlGWEVwldG------------------MEItQF--TYFQQ-vGg-~-~c~pv~ 154 (281)
T d1j5wa_ 100 GINLKEHDIRF-VEDN-WESPTLGAWGVGWEVWLDG------------------MEITQF--TYFQQ-IGG-I-SLKDIP 154 (281)
T ss_dssp TCCTTTSCEEE-EEEC-CEEGGGTEEEEEEEEEETT------------------EEEEEE--EEEEE-BTT-B-CCSSCC
T ss_pred CCCccccceEE-Eecc-CcCCcccceeeeeEEEEcC------------------eeeeee--ehhhh-hcC-c-cccccc
Confidence 5433 244677 4667 7643335566567887776 788533 22333 233 2 344455
Q ss_pred ccccchHHHHHHHHhCCCCcccc
Q psy6339 243 IDTGLGFERLVTILQNKTSTYDT 265 (925)
Q Consensus 243 IDTGmGLERl~~vlqg~~snydt 265 (925)
+.-=+||||||+.+||+.|+||.
T Consensus 155 ~EiTYGLERiaMylQ~vd~v~Dl 177 (281)
T d1j5wa_ 155 LEITYGLERIAMYLQGVDNVYEV 177 (281)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGC
T ss_pred hhhhhhHHHHHHHHhCcchheee
Confidence 67779999999999999999997
No 10
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=76.81 E-value=0.18 Score=51.47 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHhcccCCCcEEeCCCCC
Q psy6339 13 CSKSIRSSFLDYFCNTQGHTLVKSSPI 39 (925)
Q Consensus 13 ~~~eiR~~Fl~fF~~~~gH~~v~sssl 39 (925)
...++++...++|. +-|...+....+
T Consensus 18 Pl~~~~~~i~~if~-~~GF~~~~gp~i 43 (266)
T d1jjca_ 18 PITLMERELVEIFR-ALGYQAVEGPEV 43 (266)
T ss_dssp HHHHHHHHHHHHHH-TTTCEECCCCSE
T ss_pred hHHHHHHHHHHHHH-HcCCeEeeCCcc
Confidence 45678888888888 589988876433
No 11
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=62.72 E-value=2.3 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHH
Q psy6339 453 KNIIQELAAAKKLTLCHEAFEQKLNELK 480 (925)
Q Consensus 453 ~dl~~~ia~e~g~~vd~~~f~~~~~~~~ 480 (925)
+||+...|+|.|.+++.+-|...|+.-|
T Consensus 4 ldlvrkvaeeng~s~ns~iy~~vmes~k 31 (36)
T d1u9pa1 4 LDLVRKVAEENGRSVNSEIYQRVMESFK 31 (36)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 6899999999999999888877787554
No 12
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=41.41 E-value=0.22 Score=51.34 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=52.4
Q ss_pred CCceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeecccc
Q psy6339 822 DDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWS 886 (925)
Q Consensus 822 ~~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~s 886 (925)
+.+||+++. .+++.|+|+|.+.+.. ..++..+|......++++|-+ ....-++|+.+|||.
T Consensus 9 ~l~lf~~~~-~~~G~~~~lP~G~~l~---~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~ 70 (291)
T d1qf6a4 9 QLDLYHMQE-EAPGMVFWHNDGWTIF---RELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWD 70 (291)
T ss_dssp HTTCEECCT-TSTTCCEECHHHHHHH---HHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHH
T ss_pred hCCCccccC-CCCcceEEccCHHHHH---HHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhh
Confidence 456888874 4699999999987776 678889998888899999999 788899999999997
No 13
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.15 E-value=5 Score=35.04 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred HHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 117 ACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 117 ai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
..+---+||.+ .||||++|+||+++.
T Consensus 76 ~s~~i~~~l~~-~LgI~~~RiyI~f~~ 101 (117)
T d1dpta_ 76 HSAHFFEFLTK-ELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHH-HHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHH-HcCCCcCeEEEEEEE
Confidence 34445677888 899999999999984
No 14
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=38.92 E-value=5.1 Score=34.89 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=21.7
Q ss_pred HHHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 116 DACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 116 eai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
+...---+||.+ .||||++|+||+++.
T Consensus 75 ~~s~~i~~~l~~-~LgI~~~Riyi~f~d 101 (115)
T d1uiza_ 75 SYTKLLCDILTK-QLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHH-HcCCCcceEEEEEEE
Confidence 344455678888 999999999999875
No 15
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.54 E-value=13 Score=34.84 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=36.2
Q ss_pred hhhhhhcccccC--cc--cHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCC
Q psy6339 99 TFFEMLGNWSFN--DY--YKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPR 167 (925)
Q Consensus 99 TfFeMLGn~SFg--dY--fK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~ 167 (925)
+.|..-||+||| +| |-| | -+|.... ..|++ ||+.-.. ..|+||+-+|..+|+|=
T Consensus 118 ~~fd~~gn~~fGi~e~~~FpE--i--~~d~~~~-i~G~~-----ItivTsa-----~~~~e~~~Ll~~~g~Pf 175 (177)
T d2zjrd1 118 NAFDGRGNYNLGIKEQLIFPE--I--TYDMVDK-TRGMD-----ITIVTTA-----KTDEEARALLQSMGLPF 175 (177)
T ss_dssp SCCSTTTCCEECCCCSTTCSS--C--CGGGSSS-CCCCB-----EEEECCC-----SSHHHHHHHHHHTCCCC
T ss_pred cccCcCceEEechhhhhcccc--c--cccccCC-cCCce-----EEEEEcc-----CCHHHHHHHHHHcCCCc
Confidence 567888999999 22 221 1 1344434 55665 7777543 36999999999999984
No 16
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.11 E-value=7 Score=33.90 Aligned_cols=56 Identities=13% Similarity=0.319 Sum_probs=34.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCcchhhhhhcccccCcccHHH---HHHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRD---ACRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 74 ~~QkCiR~gGKHnDld~VG~t~rHhTfFeMLGn~SFgdYfK~e---ai~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
....++++||. | |.. .|.|. -|+|..=.++ ..+---+||.+ .||||++|+||+++.
T Consensus 42 ~~~~~m~fgGs--~-~P~-------a~~~l---~siG~~~~~~n~~~s~~i~~~l~~-~LgI~~~RiyI~f~d 100 (114)
T d2gdga1 42 VPDQLMTFSGT--N-DPC-------ALCSL---HSIGKIGGAQNRNYSKLLCGLLSD-RLHISPDRVYINYYD 100 (114)
T ss_dssp ECSCEEEETTB--C-SSC-------EEEEE---EESSCCSHHHHHHHHHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred eCCCCeEEcCC--C-CCE-------EEEEE---EEecCCCHHHHHHHHHHHHHHHHH-HhCCCcceEEEEEEE
Confidence 34556778763 2 221 34443 3555432333 33444577888 899999999999874
No 17
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=33.88 E-value=7.1 Score=33.76 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=20.1
Q ss_pred HHHHHhhcccCCCCCCCCceEEEEEc
Q psy6339 118 CRMALEFLTKPPVSLPLDRLYFTYFG 143 (925)
Q Consensus 118 i~~awe~Lt~~~l~l~~~rl~vT~~~ 143 (925)
.+---+||.+ .||||++|+||+++.
T Consensus 76 s~~i~~~l~~-~LgI~~~RiyI~f~d 100 (113)
T d1hfoa_ 76 SAKLFDHLNT-KLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHH-HHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHH-HcCCCcceEEEEEEE
Confidence 3344566888 899999999999974
No 18
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.94 E-value=8.2 Score=39.02 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.5
Q ss_pred CCCCcccccchHHHHHHHHhCCCCccccccc
Q psy6339 238 LSKNYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 238 Lp~k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
|| +|==-|+|+|||++++.|+++.=|+=+|
T Consensus 254 mP-P~~G~glGiDRL~m~l~g~~~Irdv~~F 283 (293)
T d1nnha_ 254 LK-PSAGAGIGVERLVRFIVGAKHIAEVQPF 283 (293)
T ss_dssp CC-CEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred CC-CCCeEeehHHHHHHHHhCCCcHHheecC
Confidence 55 4667789999999999999998777555
No 19
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.96 E-value=0.62 Score=47.81 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=51.9
Q ss_pred CceEEEcccccceeeeccCCCCCCCCCccccccceecccccCCcccccc-cCCcceeeeeeccccc
Q psy6339 823 DSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGR-DSYHHTFFEMLGNWSF 887 (925)
Q Consensus 823 ~~l~f~~Agm~~~~~~~l~~~~~~~~~~~~~q~ciR~~~k~~d~~~Vg~-~~~h~t~fem~g~~sf 887 (925)
.+||.++-...++.|+|+|.+++.. ..++..+|...+..++++|-+ ...+-.+|+-+|||..
T Consensus 9 l~lf~~~~~~g~G~~~~~p~G~~l~---~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~ 71 (291)
T d1nyra4 9 LELFTNSQLVGAGLPLWLPNGATIR---REIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDH 71 (291)
T ss_dssp TTCEEEETTTEEEEEEECHHHHHHH---HHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHH
T ss_pred cCCccccccccCcceEEehhHHHHH---HHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccc
Confidence 3577666556799999999998776 677788888888899999998 7889999999999984
No 20
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=29.58 E-value=9.3 Score=39.16 Aligned_cols=99 Identities=17% Similarity=0.354 Sum_probs=54.1
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCC--CcCCCCccceecccccccc-ccccCCCCC---------CCCCccccccccccCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPI--VPYGDDSIAFVNSGMCQFK-NVFLGLTPA---------PYPRVANSQKCVRVGG 83 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~sssl--vp~~dptllF~nAGM~qFk-~~flG~~~p---------~~~r~~~~QkCiR~gG 83 (925)
+|-+.+-+||. ++|-..|..--| .|-....-.|+.- ...|+ +.+|-+.+- -..|+-..-+|.|..
T Consensus 28 ~i~~~iR~ff~-~~gFiEV~TPil~~~~~~~~~~~f~~~-~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E- 104 (342)
T d1e1oa2 28 KILAAIRQFMV-ARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE- 104 (342)
T ss_dssp HHHHHHHHHHH-TTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHH-HCCCEEEECCCccccCCCCCCcceeec-ccCCCcccccchhhHHHHHHHhhhcccceeeeccccccc-
Confidence 56677889999 689888854322 2222222233211 11222 234444321 368899999999983
Q ss_pred CCCCCCCCCCCCCcchhhhhhc-ccccCccc-----HHHHHHHHHhhc
Q psy6339 84 KHNDLSCAGRDSYHHTFFEMLG-NWSFNDYY-----KRDACRMALEFL 125 (925)
Q Consensus 84 KHnDld~VG~t~rHhTfFeMLG-n~SFgdYf-----K~eai~~awe~L 125 (925)
+ .+.||++=|-||= -.||-||- =++.|...+..+
T Consensus 105 ---~-----~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~ 144 (342)
T d1e1oa2 105 ---G-----ISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEV 144 (342)
T ss_dssp ---C-----CCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---c-----ccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHH
Confidence 2 3569998887753 23455542 244455555544
No 21
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=29.18 E-value=9.5 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCccccccc
Q psy6339 246 GLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 246 GmGLERl~~vlqg~~snydtD~f 268 (925)
|||+|||++++-|..+.=|+=+|
T Consensus 293 glGldRL~m~l~g~~~Irdvi~F 315 (346)
T d1c0aa3 293 AFGLDRLTMLLTGTDNIRDVIAF 315 (346)
T ss_dssp EEEHHHHHHHHHTCSCGGGGSSS
T ss_pred eEHHHHHHHHHcCCCcHHheecC
No 22
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=26.34 E-value=11 Score=38.82 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcccCCCcEEeCCCCCCcCC--CCccceeccccccc-cccccCCCCC---------CCCCccccccccccC
Q psy6339 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYG--DDSIAFVNSGMCQF-KNVFLGLTPA---------PYPRVANSQKCVRVG 82 (925)
Q Consensus 15 ~eiR~~Fl~fF~~~~gH~~v~ssslvp~~--dptllF~nAGM~qF-k~~flG~~~p---------~~~r~~~~QkCiR~g 82 (925)
++|-+.+-+||. ++|-..|..--|.+.. +....|+.. .+.| ++++|-+.+- -..|+-..-+|.|..
T Consensus 44 s~i~~~iR~ff~-~~gfiEV~TP~L~~~~~eg~~~~~~~~-~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE 121 (356)
T d1l0wa3 44 HRVIKAIWDFLD-REGFVQVETPFLTKSTPEGARDFLVPY-RHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE 121 (356)
T ss_dssp HHHHHHHHHHHH-HTTCEECCCCSSBCCCSSSSCCCEEEC-TTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCC
T ss_pred HHHHHHHHHHHH-HCCCEEEECCccccCCCcccccchhhh-hcccccccCCCcChhHHHHHhhhcccCcEEEEecccccc
Confidence 356677889999 5998888644443321 223333221 1222 2234444321 267888889999984
Q ss_pred CCCCCCCCCCCCCCcchhhhhhc
Q psy6339 83 GKHNDLSCAGRDSYHHTFFEMLG 105 (925)
Q Consensus 83 GKHnDld~VG~t~rHhTfFeMLG 105 (925)
++| .|||.=|-||=
T Consensus 122 -------~~~--t~H~~EFtmLE 135 (356)
T d1l0wa3 122 -------DLR--ADRQPDFTQLD 135 (356)
T ss_dssp -------CCC--SSCCSEEEEEE
T ss_pred -------ccC--CcchhhhhHHH
Confidence 344 58999898874
No 23
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=26.17 E-value=12 Score=37.60 Aligned_cols=28 Identities=21% Similarity=0.136 Sum_probs=22.8
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
+|-=-|||+|||++++-|.++.=|+=.|
T Consensus 276 P~~G~glGiDRL~m~l~g~~~Irdv~~F 303 (304)
T d1n9wa2 276 PHGGFAIGAERLTQKLLGLPNVRYARAF 303 (304)
T ss_dssp SEEEEEEEHHHHHHHHTTCSSGGGGCSC
T ss_pred CCceeehHHHHHHHHHhCCCcHHheecC
Confidence 5567799999999999999987666444
No 24
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184 {Helicobacter pylori [TaxId: 210]}
Probab=24.89 E-value=1.2e+02 Score=27.29 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=75.2
Q ss_pred cCCCCeEE-EEEchhchHHHHHHhHHHHHHHHHHHHhh-cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy6339 627 VTPGLTSR-VEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 704 (925)
Q Consensus 627 l~~G~~V~-~~VD~~rR~~~mr~HTAtHLL~aAL~~vl-~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~ 704 (925)
+..|+.|+ +.+|..-|..-.-+|-|+-|| |+.. -.-. +=-..+|+.+.+ |-| .+..+-++-.++-+.+--.
T Consensus 63 in~~~kvenIVfDYnG~~~eRF~hraqlll----Reegfinft-aY~tKtpghLhl-yIh-kghttL~Ea~ql~k~lS~k 135 (176)
T d2atza1 63 ILRNDKVENIVFDYNGRNPERFYHKAQLLL----REEGFMNFT-AYNTKTPGHLHL-YVH-KGHTELGEGERLVKTLSMK 135 (176)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHH----HHTTCCCEE-EEECSSTTCEEE-EEC-CCSEEHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEcCCCCHHHHHHHHHHHH----HHhccceee-eeccCCCCeEEE-EEE-eCcccHHHHHHHHHHHHHH
Confidence 45677776 667888888888899998765 4443 2211 111247777776 333 4567788888888888889
Q ss_pred HHccCCeeEEEcCccccccccccccccCCcCC
Q psy6339 705 IANQVQVDRRHMRASELPFLTHLTVIPGEIYP 736 (925)
Q Consensus 705 I~~~~pV~~~~~~~eEA~~~~g~~~l~geky~ 736 (925)
.++.+|.+.+..|-.+.-+.+.+..+|-+.|.
T Consensus 136 La~klpkeWr~fPs~d~P~efNIl~LPyevy~ 167 (176)
T d2atza1 136 LAQGLPKEWKVFPSNEWPKEFNILALPYEVFA 167 (176)
T ss_dssp HHTTSCCCEEEESCTTSCGGGCEEECCCEEEE
T ss_pred HHhhCCcceeecCCccCchhccEeeccHHHHh
Confidence 99999999999998888888888888766653
No 25
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.32 E-value=13 Score=38.09 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.3
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q psy6339 241 NYIDTGLGFERLVTILQNKTSTYDTDLF 268 (925)
Q Consensus 241 k~IDTGmGLERl~~vlqg~~snydtD~f 268 (925)
+|==-|||+|||++++-|.+|.=|+=.|
T Consensus 317 P~~G~glGiDRL~m~l~~~~~Irdvi~F 344 (353)
T d1eova2 317 PHAGGGIGLERVVMFYLDLKNIRRASLF 344 (353)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCceeeeHHHHHHHHHhCCCcHHheeCC
Confidence 5667799999999999999997776444
No 26
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=22.17 E-value=15 Score=37.19 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHHhcccCCCcEEeCCCCCCcCC--CCccceeccccccccccccCCCCC---------CCCCccccccccccCCC
Q psy6339 16 SIRSSFLDYFCNTQGHTLVKSSPIVPYG--DDSIAFVNSGMCQFKNVFLGLTPA---------PYPRVANSQKCVRVGGK 84 (925)
Q Consensus 16 eiR~~Fl~fF~~~~gH~~v~ssslvp~~--dptllF~nAGM~qFk~~flG~~~p---------~~~r~~~~QkCiR~gGK 84 (925)
.|-+..-+||. ++|-..|..-.|++.. ...-.|.-.-- =++++|-+.+- -..|+-..-+|.|..
T Consensus 39 ~i~~~iR~ff~-~~gflEV~TPil~~~~~~~~~~~f~~~~~--~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e-- 113 (335)
T d1b8aa2 39 SVFKAVRDFFH-ENGFIEIHTPKIIATATEGGTELFPMKYF--EEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAE-- 113 (335)
T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEESCCCSSSSSCCEEEET--TEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC--
T ss_pred HHHHHHHHHHH-HCCCEEEECCccCccCCchhhhhcccccc--ccccccccChHHHHHHHHhhhhhhHHHhhcccccc--
Confidence 45566778999 5899988643232211 11112221100 12345543321 246777777999983
Q ss_pred CCCCCCCCCCCCcchhhhhh-cccccC
Q psy6339 85 HNDLSCAGRDSYHHTFFEML-GNWSFN 110 (925)
Q Consensus 85 HnDld~VG~t~rHhTfFeML-Gn~SFg 110 (925)
..| +.||+..|-|| .-..++
T Consensus 114 -----~~~-~~rh~~Ef~~le~~~~~~ 134 (335)
T d1b8aa2 114 -----EHN-TTRHLNEAWSIDSEMAFI 134 (335)
T ss_dssp -----SSC-CSSCCSEEEEEEEEEESC
T ss_pred -----ccc-ccccchHHHhhhHHHHHH
Confidence 233 56899999998 555554
No 27
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.18 E-value=9.6 Score=35.90 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=33.0
Q ss_pred hhhhhhcccccCcccHHHHH--HHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCC
Q psy6339 99 TFFEMLGNWSFNDYYKRDAC--RMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPR 167 (925)
Q Consensus 99 TfFeMLGn~SFgdYfK~eai--~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~ 167 (925)
+.|.--||+||| +++..+ +.-+|.... ..|++ ||+-.-. ..|+||+.+|..+|+|=
T Consensus 120 ~~fd~~gn~sfG--i~e~~~fPei~yd~~~~-i~G~~-----ItivTta-----~~~~e~~~Ll~~~g~Pf 177 (179)
T d1iq4a_ 120 KSFDGRGNYTLG--IKEQLIFPEIDYDKVNK-VRGMD-----IVIVTTA-----NTDEEARELLALLGMPF 177 (179)
T ss_dssp SCBCSSSEEEEE--ESCGGGSTTCCGGGSSC-CCCEE-----EEEEESC-----SSHHHHHHHHHHHTCCB
T ss_pred hhcccccceeec--hhHhhccccccccccCC-cCcce-----EEEEecc-----CCHHHHHHHHHHcCCCc
Confidence 456667999999 222110 001232322 34444 5655432 36999999999999883
No 28
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=20.45 E-value=17 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=18.4
Q ss_pred HHHHHHHhhccCCCCCCCCcEEEEE
Q psy6339 895 ACRMALEFLTKPPVSLPLDRLYFTF 919 (925)
Q Consensus 895 ~i~~~~~~lt~~~~~~~~~~~~~t~ 919 (925)
...---++|++ .||||++|+|+++
T Consensus 76 ~s~~i~~~l~~-~LgI~~~Riyi~f 99 (115)
T d1uiza_ 76 YTKLLCDILTK-QLNIPANRVYINY 99 (115)
T ss_dssp HHHHHHHHHHH-HHCCCGGGEEEEE
T ss_pred HHHHHHHHHHH-HcCCCcceEEEEE
Confidence 34444567787 4999999999987
No 29
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.24 E-value=32 Score=34.33 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=18.1
Q ss_pred CCCCccccCCCCcccccchHHH-HHHHH
Q psy6339 230 VSADTIVPLSKNYIDTGLGFER-LVTIL 256 (925)
Q Consensus 230 ~~~g~l~~Lp~k~IDTGmGLER-l~~vl 256 (925)
+.||+-.-+| .+|-+-.|+|| +.++|
T Consensus 258 ~~d~~~k~vP-~vIe~s~gldR~~lAiL 284 (290)
T d1g5ha2 258 GRDGRKNVVP-CVLSVSGDVDLGTLAYL 284 (290)
T ss_dssp EEETTEEECC-EEEEEEEEHHHHHHHHH
T ss_pred ccCCCeeEee-EEEeCccchHHHHHHHH
Confidence 3455544466 47889999999 56777
Done!