RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6339
(925 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 533 bits (1375), Expect = e-175
Identities = 286/822 (34%), Positives = 424/822 (51%), Gaps = 103/822 (12%)
Query: 15 KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG-----LTPAPY 69
IR +FL +F ++GHT + SSP+VP D ++ F N+GM QFK +FLG
Sbjct: 14 DRIRRTFLSFF-ESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKL 72
Query: 70 PRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP 129
PR N+QKC+R GGKHNDL G+D+YHHTFFEMLGNWSF DY+K++A A E LTK
Sbjct: 73 PRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTK-V 131
Query: 130 VSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCG 189
LP DRLY TYFGG + D+E R IWL+ +P + + G K NFWEMG TGPCG
Sbjct: 132 YGLPADRLYATYFGGDE--KQAPDDEARAIWLDY-LPEERVLPFGCKDNFWEMGDTGPCG 188
Query: 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249
SEIHYD GE +A VN D IEIWN+VFI R + ++ PL ++DTG+G
Sbjct: 189 PCSEIHYDRIGERDAADL-VNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGL 247
Query: 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
ERL +ILQNK S YDTDLF+P+ + I++ +GA+PY + +D +YR+++D+ R
Sbjct: 248 ERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRT 307
Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDV 363
++ A+AD + P + LR ++R A+ + ++G LV+ + E+ GDV
Sbjct: 308 LSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVV----VELSGDV 363
Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
+PE++ + +I I+ EE F KT L G++
Sbjct: 364 FPEVKKNEKRITEIIAEEELSF--------------GKT--------------LEKGIEK 395
Query: 424 LTKQL--ARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKE 481
K L A+ +SG AF LYDTYG ++ + +A + +T+ E FE + E +E
Sbjct: 396 FKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARE 455
Query: 482 RSK-AKAASNVPDIDL-------MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVG 533
RS+ A + I+L + + TDD KYD+ D + +
Sbjct: 456 RSRAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAV----------VKA 505
Query: 534 IVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYL 593
I+ G G ++S+ VG++ DKT+ YA +GGQI D GV
Sbjct: 506 ILTG----------------GGFVESVSEGDE--VGIVLDKTSFYAESGGQIGDTGVLEG 547
Query: 594 TNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSH 653
+ VE+ ++ G ++H G V+ V+ G +VD R HT +H
Sbjct: 548 SG----GAVVEVSDVQKAGGFVLHIG-TVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATH 602
Query: 654 LLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVD 712
LLN+AL+ VL QK V ++ DFS +G+ ++ + + VE +N+ I + + V+
Sbjct: 603 LLNSALKEVLGDHVDQKGSLVAFEKLRFDFS-HGKPMTPEELREVESLVNEWIGDALPVE 661
Query: 713 RRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTV 772
+ M ++ + L + GE YPD V ++ + S E C GTHV NT E+ +
Sbjct: 662 AKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---YSMELCGGTHVSNTAEAEAFKL 718
Query: 773 IGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILN 814
+ + G+R I +TG AAVE ++ A S + L+
Sbjct: 719 LSEEGIAKGIRRITAVTGG---AAVE---AINAADSLERELD 754
Score = 150 bits (381), Expect = 4e-37
Identities = 59/107 (55%), Positives = 71/107 (66%), Gaps = 6/107 (5%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLG-----LTPAPYPRVANSQKCIRVGGKHNDLSFAGRD 872
+P D ++ F N+GM QFK +FLG PR N+QKCIR GGKHNDL G+D
Sbjct: 38 VPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKD 97
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTF 919
+YHHTFFEMLGNWSF DY+K++A A E LTK LP DRLY T+
Sbjct: 98 TYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTK-VYGLPADRLYATY 143
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 513 bits (1325), Expect = e-169
Identities = 279/819 (34%), Positives = 384/819 (46%), Gaps = 162/819 (19%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
S IR FLD+F ++GHT+V S+ +VP D ++ F N+GM QFK+ FLG PYPR
Sbjct: 4 SAEIRQKFLDFF-ESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRAT 62
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPV-SL 132
SQKC+R NDL G + HHTFFEMLGN+SF DY+K +A A E LT V L
Sbjct: 63 TSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTS--VLGL 116
Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
P ++LY T + D+E DIW E+GVP + I + G K NFW MG TGPCG
Sbjct: 117 PKEKLYVTVY--------EDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPC 168
Query: 192 SEIHYD-----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPL-SKNYIDT 245
SEI YD G P S + DR IEIWN+VF+ R + PL KN IDT
Sbjct: 169 SEIFYDRGEEYWGGPPGSPEE--DGDR--YIEIWNLVFMQFNRDEDGNLTPLPKKN-IDT 223
Query: 246 GLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSD 305
G+G ER+ +LQ S Y+TDLF PL++ IE+++G K D S+R+++D
Sbjct: 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYED-----------DVSFRVIAD 272
Query: 306 YSRMITVALADNMFPDATAK-------LRNVVRDA-LL-ISEDVFKVKQGKLVKELSYNI 356
+ R + +AD + P + LR VR LL I E KLV +
Sbjct: 273 HIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKEPFL----YKLVPVV---- 324
Query: 357 AEILGDVYPEI---QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIME 413
+ +GD YPE+ QD I K+ + EE R KT LE+
Sbjct: 325 IDEMGDAYPELKEKQDLIEKV--LKAEEERFL---------------KT---LER----- 359
Query: 414 EPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFE 473
G+K L + LA+ + +SG+ AF LYDTYG ++ E+A + LT+ E FE
Sbjct: 360 ------GLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFE 413
Query: 474 QKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYH-YDTNSKRYTFPCLDTNLV 532
+ E +ER++A L +L D ++ YDT + ++
Sbjct: 414 AAMEEQRERARAARKFKGDYNALEELL------DDLATEFVGYDTLEA-------EAKVL 460
Query: 533 GIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAY 592
+ G S+DS + V + DKT YA +GGQ+ D G
Sbjct: 461 ALF----------------VDGESVDSAKAGEEVEV--VLDKTPFYAESGGQVGDTG--V 500
Query: 593 LTNTTQENGKVEIGE-LASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTT 651
+ + G E+ + G IVH G V ++ G EVD R R H+
Sbjct: 501 IED----GGVFEVTDTQKPPNGLIVHRGKVEEG-ELKVGDEVTAEVDEERRRAIARNHSA 555
Query: 652 SHLLNAALRRVL----TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIAN 707
+HLL+AALR VL T Q V D DFS + E L+ + + +E +N+ I
Sbjct: 556 THLLHAALREVLGEHVT---QAGSLVAPDRLRFDFS-HFEALTPEELRKIEDLVNEKIRE 611
Query: 708 QVQVDRRHMRASE--------LPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGT 759
+ V+ M E L F GE Y D+V ++ I D S E C GT
Sbjct: 612 NLPVETEEMSIEEAKKMGAMAL-F--------GEKYGDEVRVVSIGD----FSIELCGGT 658
Query: 760 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVE 798
HV NTG I ++ GVR I+ +TG +AA+E
Sbjct: 659 HVSNTGDIGLFKIVSESGVAAGVRRIEAVTG---EAALE 694
Score = 159 bits (404), Expect = 6e-40
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFK+ FLG PYPR SQKCIR NDL G + HHT
Sbjct: 29 VPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT----NDLENVGYTARHHT 84
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPV-SLPLDRLYFT 918
FFEMLGN+SF DY+K +A A E LT V LP ++LY T
Sbjct: 85 FFEMLGNFSFGDYFKEEAIEWAWELLTS--VLGLPKEKLYVT 124
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 504 bits (1300), Expect = e-165
Identities = 260/831 (31%), Positives = 388/831 (46%), Gaps = 147/831 (17%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQ 76
IR FLD+F +GHT+V SSP+VP D ++ F N+GM QFK F G P R SQ
Sbjct: 11 IRQKFLDFF-EKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQ 69
Query: 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDR 136
KC+R ND+ G + HHTFFEMLGN+SF DY+K +A A EFLTK + LP ++
Sbjct: 70 KCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKV-LGLPKEK 124
Query: 137 LYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIH 195
LY T + D+E + W + +G+P + I + G NFWEMG GPCG SEI
Sbjct: 125 LYVTVY--------EDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMG-DGPCGPCSEIF 175
Query: 196 YD----MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSAD-TIVPLSKNYIDTGLGFE 250
YD + G P + + D + +EIWN+VF+ + R D PL K IDTG+G E
Sbjct: 176 YDRGEEIGGGPPGS---PDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLE 232
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
R+ +LQ + YDTDLF P+++ IEK++G K YG + D D S+R+++D+ R +
Sbjct: 233 RIAAVLQGVPTNYDTDLFRPIIKAIEKLTG-KKYG-----EDEEDPDVSFRVIADHIRSL 286
Query: 311 TVALADNMFPDATAK---LRNVVRDA------LLISEDVFKVKQGKLVKELSYNIAEILG 361
+AD + P + LR ++R A L I E KLV + + +G
Sbjct: 287 AFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKEPFL----YKLVDTV----IDEMG 338
Query: 362 DVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
D YPE+++ + I+ +L E F KT L G+
Sbjct: 339 DAYPELKEKEDFIKEVLKLEEERFA--------------KT--------------LERGL 370
Query: 422 KYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKE 481
K L K+LA+ + G+ AF LYDTYG + +E+A + L + FE + +E
Sbjct: 371 KLLEKELAKLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRE 430
Query: 482 RSKAKAASN--VPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQ 539
R++A A S + + ++L + YD L+ +V+
Sbjct: 431 RARASAGSGEGAKESEDLELIDKLPETEFLGYDD-------------LEMEFKVLVLFV- 476
Query: 540 VFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNT--- 596
G + + +V + D+T YA +GGQ+ D G +
Sbjct: 477 -------------DGKEVSELNEGQEVYV--VLDQTPFYAESGGQVGDTGYIFGDGGGRF 521
Query: 597 ----TQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTS 652
Q+ G G IVH G V S ++ G EVD R MR HT +
Sbjct: 522 EVTDVQKVGN----------GVIVHKGKVESG-ELKVGDEVTAEVDEERRRRLMRNHTAT 570
Query: 653 HLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQV 711
HLL+AALR+VL +Q V ++ DFS + + L+ + + +E+ +N++I + V
Sbjct: 571 HLLHAALRKVLGDHVWQAGSLVDPEKLRFDFS-HYKALTAEELKEIERLVNEIIRENLPV 629
Query: 712 DRRHMRASE-------LPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 764
M E F GE Y D+V +++I D S E C GTHV NT
Sbjct: 630 KTEEMDLDEAKAKGAMALF--------GEKYGDEVRVVEIGD----FSVELCGGTHVSNT 677
Query: 765 GHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNV 815
G I +I + GVR I+ +TG+++ ++ + + +L V
Sbjct: 678 GDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQ--EQEDLLKEIASLLKV 726
Score = 146 bits (371), Expect = 7e-36
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFK F G P R SQKCIR ND+ G + HHT
Sbjct: 33 VPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K +A A EFLTK + LP ++LY T
Sbjct: 89 FFEMLGNFSFGDYFKEEAIEFAWEFLTK-VLGLPKEKLYVT 128
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 456 bits (1175), Expect = e-151
Identities = 226/630 (35%), Positives = 322/630 (51%), Gaps = 91/630 (14%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGL-TPAPYPRVANS 75
IR +FLD+F +GHT+V SSP+VP D ++ F N+GM QFK +FLG PY R NS
Sbjct: 2 IRQTFLDFFEK-KGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEAKPPYNRAVNS 60
Query: 76 QKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLD 135
QKC+R GGKHNDL GR + HHTFFEMLGN+SF DY+K +A A E LTK + L +
Sbjct: 61 QKCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIEFAWELLTK-VLGLDPE 119
Query: 136 RLYFTYFGGSDQYGLPCDEETRDIWLEL-GVPRDHIKKEGMKCNFWEMGSTGPCGYSSEI 194
RLY T + D+E IW ++ G+P + I + G K NFWEMG TGPCG SEI
Sbjct: 120 RLYVTVYEW--------DDEAGPIWEKIVGIPEERILRFGDKDNFWEMGDTGPCGPCSEI 171
Query: 195 HYDMKGE---PSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER 251
YD +GE + AD + +EIWN+VF+ R S T+ PL K IDTG+G ER
Sbjct: 172 DYD-RGEEIGGWPSGGPPTADDDRFLEIWNLVFMQFNRESDGTLKPLPKKSIDTGMGLER 230
Query: 252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMIT 311
LV +LQN S YDTDLF+PL+E IE++SGAK Y + T D +YR+++D++R +T
Sbjct: 231 LVAVLQNVRSNYDTDLFIPLIELIEEISGAKYYTKDET-------DEAYRVIADHTRALT 283
Query: 312 VALADNMFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQ 368
A+AD + P + LR ++R A+ ++ +K+ L +L + E +GD YPE++
Sbjct: 284 FAIADGVVPSNEGRGYVLRRILRRAVRHAKK-LGLKEPFL-YKLVPTVIEEMGDAYPELK 341
Query: 369 DSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQL 428
+ + IQ IL E F KT L G++ L + +
Sbjct: 342 EKEDTIQEILELEEERFA--------------KT--------------LERGLRLLERLI 373
Query: 429 ARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA 488
+ G+ AF LYDTYG ++ QE+A + LT+ FE+ + E +ERSK
Sbjct: 374 KSLKKSKTLPGEDAFKLYDTYGFPVDLTQEIAEERGLTVDMPGFEKAMVEQRERSKQAVK 433
Query: 489 SNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAI 548
++D+ L P T + YD + ++ + +
Sbjct: 434 EKGEELDVSALVELPATSEFLGYDDLEA-----------EAKILALFKDGE--------- 473
Query: 549 RHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGEL 608
+ + V I D+T YA +GGQI D G Y+ E G+ + ++
Sbjct: 474 -------FVAEVLEGQEGGV--ILDRTPFYAESGGQIGDTG--YIIG---EGGEFRVTDV 519
Query: 609 ASLEGKIVHFGNVVSSFKVTPGLTSRVEVD 638
G +VH G + S + G T VD
Sbjct: 520 QKYGGVVVHKGK-LESGSLKVGDTVIAVVD 548
Score = 160 bits (408), Expect = 1e-41
Identities = 57/102 (55%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGL-TPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876
+P D ++ F N+GM QFK +FLG PY R NSQKCIR GGKHNDL GR + HH
Sbjct: 24 VPRNDPTLLFTNAGMNQFKPIFLGGEAKPPYNRAVNSQKCIRAGGKHNDLENVGRTARHH 83
Query: 877 TFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
TFFEMLGN+SF DY+K +A A E LTK + L +RLY T
Sbjct: 84 TFFEMLGNFSFGDYFKEEAIEFAWELLTK-VLGLDPERLYVT 124
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 464 bits (1197), Expect = e-150
Identities = 257/811 (31%), Positives = 380/811 (46%), Gaps = 116/811 (14%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQ 76
IR +FLD+F +GH ++ S+ +VP D ++ N+GM QFK +F G+ P R+ N+Q
Sbjct: 2 IRQTFLDFFKE-KGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQ 60
Query: 77 KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDR 136
C+R+ ND+ GR + HHTFFEMLGN+SF DY+K +A A E LT + L +R
Sbjct: 61 PCIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSV-LGLDKER 115
Query: 137 LYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY 196
LY T + DEE +IW + G+P + I + G K NFW+MG GPCG +EI+Y
Sbjct: 116 LYVTVY--------EDDEEAYEIWEKHGIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYY 166
Query: 197 DM----KGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERL 252
D G+P DR +E+WN+VF+ R PL K IDTG+G ER
Sbjct: 167 DRGEFVGGKPGEPEFFEENDR--YVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERF 224
Query: 253 VTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDT--SYRMLSDYSRMI 310
V +LQ + YDTD+FLPL+E IE+++G K + ++ S R+++D++R +
Sbjct: 225 VAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRAL 284
Query: 311 TVALADNMFPDATAK---LRNVVRDALL------ISEDVFKVKQGKLVKELSYNIAEILG 361
LAD + P + LR ++R AL + E KLV + E+LG
Sbjct: 285 AFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLGLKEAFLY----KLVPT----LIEVLG 336
Query: 362 DVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
D YPE+++ ++ IL E E+F E GL L
Sbjct: 337 DYYPELKEKQEFVEQILELEE------------------------ERFAKTLERGLRLFE 372
Query: 422 KYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKE 481
K L K E+ G+ AF LYDTYG + +E+A + LT+ FE + E +E
Sbjct: 373 KLLKKL-----GKKELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRE 427
Query: 482 RSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVF 541
RSKA + + ++ + L + + Y+ D VIG +F
Sbjct: 428 RSKAASQTISFELQEIALANVYPATEFLGYE---------------DLEFEAKVIG--LF 470
Query: 542 CIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENG 601
G +D E V +I D+T YA +GGQI D G YL +G
Sbjct: 471 ----------EDGKPVDEA--EAGQSVYVILDQTPFYAESGGQIGDTG--YLIA---NDG 513
Query: 602 KVEIGELASLEGKIV-HFGNV-VSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAAL 659
K + +V HFG V S KV G +D + RL MR H+ +HLL+AAL
Sbjct: 514 KFRV-VDVQKPNGVVFHFGEVEGGSLKV--GDKVIAVIDEKRRLRIMRNHSATHLLHAAL 570
Query: 660 RRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRA 718
++VL +Q V + DFS Y L+ + + +E +N+ I + + M
Sbjct: 571 QKVLGNHVWQAGSLVSVKKLRFDFSHY-RALTREELEKIEDLVNEQILANIPIKVIFMDL 629
Query: 719 SELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY 778
E + GE Y + V ++ + D +S E C GTHV NTG I ++
Sbjct: 630 DEAKAKGAFALF-GEKYGEKVRVVSVGD----VSVELCGGTHVRNTGEIGLFKIVKESGI 684
Query: 779 NHGVRSIKCLTGDSSKAAVEN-GKHLSTAAS 808
GVR I+ +TG+++ + L A
Sbjct: 685 AAGVRRIEAVTGNAAIEYLNEQEDKLKELAD 715
Score = 133 bits (336), Expect = 9e-32
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ N+GM QFK +F G+ P R+ N+Q CIR+ ND+ GR + HHT
Sbjct: 24 VPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRL----NDIENVGRTARHHT 79
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K +A A E LT + L +RLY T
Sbjct: 80 FFEMLGNFSFGDYFKEEAIAFAWELLTS-VLGLDKERLYVT 119
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 303 bits (777), Expect = 1e-96
Identities = 115/246 (46%), Positives = 148/246 (60%), Gaps = 14/246 (5%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
+ IR +FL +F +GHT V SSP+VP D ++ F N+GM QFK +FLG P P R+
Sbjct: 1 ASEIRETFLSFFEK-KGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLV 59
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLP 133
NSQKC+R G N G+ HHTFFEMLGN+SF DY+K +A A E LT+ LP
Sbjct: 60 NSQKCIRAGDIDNV----GKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVL-GLP 114
Query: 134 LDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSE 193
DRLY + F G DEE W ++G+P I++ G K NFWEMG GPCG SE
Sbjct: 115 KDRLYVSVFEGD-------DEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPCSE 167
Query: 194 IHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLV 253
I YD +GE A + N D + +EIWN+VF+ + R + T PL K +DTG+G ERLV
Sbjct: 168 IFYD-RGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLV 226
Query: 254 TILQNK 259
+LQ
Sbjct: 227 WVLQGV 232
Score = 152 bits (387), Expect = 7e-42
Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ F N+GM QFK +FLG P P R+ NSQKCIR G N G+ HHT
Sbjct: 26 VPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNV----GKTGRHHT 81
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K +A A E LT+ LP DRLY +
Sbjct: 82 FFEMLGNFSFGDYFKEEAIAFAWELLTEVL-GLPKDRLYVS 121
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 270 bits (693), Expect = 4e-80
Identities = 154/482 (31%), Positives = 240/482 (49%), Gaps = 60/482 (12%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP---RVA 73
+R ++D+F ++GH + ++P D ++ F +GM LG P+P R+
Sbjct: 6 LRKKYIDFF-KSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLG---EPHPSGTRLV 61
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSL 132
+ QKC+R G D+ G S H TFFEMLGNWS Y+K ++ + + EFLT P +++
Sbjct: 62 DVQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNI 116
Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFW-EMGSTGPCGYS 191
P D+LY T F G ++ +P DEET +W LG+P+D I + N+W +G TGPCG
Sbjct: 117 PKDKLYVTVFEGDEE--IPRDEETASVWESLGIPKDRIFYLSREHNWWGPVGETGPCGPD 174
Query: 192 SEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER 251
+EI D S R EIWN VF+ + + L + +DTG+G ER
Sbjct: 175 TEIFVDTGKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIER 234
Query: 252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMIT 311
+ LQ K+S YDT+ F P+++ IEK+SG K YG+ N D D S R+++D+ R
Sbjct: 235 TIAFLQGKSSVYDTEAFTPIIKRIEKISG-KIYGQ-----NEED-DRSIRIIADHIRAAC 287
Query: 312 VALADN--MFPDATAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPE 366
L D + P + LR ++R ++ ++ + + + +L ++ EI G YPE
Sbjct: 288 FILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKL--GIESHFLADLVDSVEEIYGSFYPE 345
Query: 367 IQDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLT 425
+ + + I+ L EE + F LRK +E+ L+ N+
Sbjct: 346 LTEKKDFIKEELNKEEEKFFKTLRKGE-QEFIKLIP--------NLGSS----------- 385
Query: 426 KQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKA 485
I GD+AF LYDTYG I +ELA+ T+ E F++ + ++ SK
Sbjct: 386 ---------KIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKK 436
Query: 486 KA 487
A
Sbjct: 437 GA 438
Score = 82.9 bits (205), Expect = 3e-16
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 12/105 (11%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYP---RVANSQKCIRVGGKHNDLSFAGRDSY 874
IP D ++ F +GM LG P+P R+ + QKC+R G D+ G S
Sbjct: 28 IPENDPTVLFTTAGMHPLVPYLLG---EPHPSGTRLVDVQKCLRTG----DIDEVGDLS- 79
Query: 875 HHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP-VSLPLDRLYFT 918
H TFFEMLGNWS Y+K ++ + + EFLT P +++P D+LY T
Sbjct: 80 HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVT 124
Score = 66.3 bits (162), Expect = 5e-11
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 647 RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 705
+ HT +HLL+ ALR VL QK + ++ DFS + E ++ D + VE +N I
Sbjct: 455 KLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFS-HPEKMTDDEIKKVEDIVNLQI 513
Query: 706 ANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTG 765
N + V + M E + + GE Y D V + +I S+E C G HV NTG
Sbjct: 514 KNDLSVKKEVMSLEEAREKGAMALF-GEKYEDIVKVYEIDG----FSKEVCGGPHVENTG 568
Query: 766 HIESCTVIGYKSYNHGVRSIKCLTGD 791
+ + + +S + GVR I+ + D
Sbjct: 569 ELGTFKIQKEQSSSSGVRRIRAILID 594
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 146 bits (371), Expect = 5e-36
Identities = 186/875 (21%), Positives = 315/875 (36%), Gaps = 253/875 (28%)
Query: 17 IRSSFLDYFCNTQGHTLVKSSPIVP-YGDD------SIA----FVNSGMCQFKNVFLGLT 65
+R +FL +F GHT +K P+V + DD SIA +V SG+
Sbjct: 61 MREAFLSFFEK-HGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLV---------- 109
Query: 66 PAPYPRVAN----SQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFND-----YYKRD 116
P AN SQ C+R+ ND+ GR H T FEM+ + +FN Y+K +
Sbjct: 110 ----PPPANPLVISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDE 161
Query: 117 ACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK-KEGM 175
EFL ELG+ + I KE
Sbjct: 162 TVEYCFEFLE-----------------------------------ELGIDPEEITYKE-- 184
Query: 176 KCNFWEMG-STGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADT 234
+ WE G + GPC E+ G +E+ +VF+ ++
Sbjct: 185 --SPWEGGGNAGPC---FEVIVG--G----------------LELATLVFMQYEEDKEGE 221
Query: 235 IVPLSKNY-------IDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK----- 282
I Y +DTG G ER V Q + YD +F +++ +++ +G +
Sbjct: 222 IEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEE 280
Query: 283 -------------PYG------RTFTTSNRTDLDTSYRM-----------LSDYSRMITV 312
+++ +D ++D++R +
Sbjct: 281 ILAENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAF 340
Query: 313 ALADNMFPDAT-----AKLRNVVRDALLISEDV-FKVKQGKLVKELSYNIAEILGDVYPE 366
L D + P A+L V+R L + ++ + LV+ E L +YPE
Sbjct: 341 MLGDGIVPSNVKEGYLARL--VIRRTLRLMRELGLDIPLSDLVEM----QLEELKKIYPE 394
Query: 367 IQDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLT 425
++++ + I IL EE + + L + +V
Sbjct: 395 LKENKDYILDILDLEEEKYRETLERG-----------------------RRIV------- 424
Query: 426 KQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAK--KLTLCHEAFEQKLNELKERS 483
++L + + EI D LYD++G+ I++E+AA ++ + F + E E+
Sbjct: 425 ERLLK--TKKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDN-FYSIVAERHEKE 481
Query: 484 KAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCI 543
+ + + K P T + Y+ + V+G
Sbjct: 482 EKEEELPKDYEER--AKDLPETRRLF-YEDPTMREFE------------AKVLG----VF 522
Query: 544 DKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKV 603
D + ++ D+T Y GGQ D G G+
Sbjct: 523 DNY-----------------------VVLDQTAFYPEGGGQPADTGY-----LITNGGEY 554
Query: 604 EIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL 663
+ ++ + G IVH V + G + E+D RL MR HT +H+L AA RRVL
Sbjct: 555 RVVDVQKVGGVIVH---KVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVL 611
Query: 664 -TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELP 722
+Q + +D+ LD + Y + +S + + +E+ N ++ V + M +E
Sbjct: 612 GRHVWQAGAQKDTDKARLDITHY-KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAE 670
Query: 723 FLTHLTVIPGEIYPDDVI-LIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 781
+ G + P I +++I D + C GTH NTG I ++ + G
Sbjct: 671 QKYGFRLYQGGVPPGREIRVVEIED----WDVQACGGTHCRNTGEIGPIKILKTERIQDG 726
Query: 782 VRSIKCLTGDSSKAAVENGKHL-STAASFSQILNV 815
V I+ G+ AA+E + L S IL V
Sbjct: 727 VERIEFAAGE---AALEYIQELEDLLRESSDILKV 758
Score = 43.4 bits (103), Expect = 6e-04
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 31/95 (32%)
Query: 824 SIA----FVNSGMCQFKNVFLGLTPAPYPRVAN----SQKCIRVGGKHNDLSFAGRDSYH 875
SIA +V SG+ P AN SQ CIR+ ND+ GR H
Sbjct: 96 SIADFQPWVTSGLV--------------PPPANPLVISQPCIRL----NDIDNVGRTGRH 137
Query: 876 HTFFEMLGNWSFND-----YYKRDACRMALEFLTK 905
T FEM+ + +FN Y+K + EFL +
Sbjct: 138 LTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEE 172
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 131 bits (333), Expect = 2e-31
Identities = 180/825 (21%), Positives = 303/825 (36%), Gaps = 250/825 (30%)
Query: 15 KSIRSSFLDYFCNTQGHTLVKSSPIVP-YGDD------SIA----FVNSGMCQFKNVFLG 63
K +R FL +F GHT ++ P+V + DD SI +V SG
Sbjct: 62 KEMREKFLSFFEK-HGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSG---------- 110
Query: 64 LTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFND-----YYKRDAC 118
L P P + SQ C+R+ ND+ GR H T FEM+ + +FN Y+K +
Sbjct: 111 LVPPPANPLVISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETV 166
Query: 119 RMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK-KEGMKC 177
EF TK ELG+ + I KE
Sbjct: 167 EYCFEFFTK----------------------------------ELGIDPEEITFKESW-- 190
Query: 178 NFWEMG-STGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIV 236
WE G + GPC ++G +E+ +VF+ +K+ + V
Sbjct: 191 --WEGGGNAGPC-----FEVLVRG----------------LELATLVFMQYKKDG-NRYV 226
Query: 237 PLSKNYI-DTGLGFERLVTILQNKTST-YDTDLFLPLLETIEKVSGAKPYGRTF------ 288
+ I DTG G ER+ Q T T YD +F L++ +++ +G +
Sbjct: 227 EM-PLKIVDTGYGLERIAWASQ-GTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAAR 283
Query: 289 ------------------TTSNRTDLDTS--YRMLS---------DYSRMITVALADNMF 319
+ + +D +L D++R + L D +
Sbjct: 284 LAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIV 343
Query: 320 PDATAK----LRNVVRDALLISEDVFKVKQGKLVKELSYNI---------AEILGDVYPE 366
P + R V+R L +L+ EL ++ + L + YPE
Sbjct: 344 P-SNVGEGYLARLVIRRTL------------RLLDELGLDVPLSELVDMQIDELKEDYPE 390
Query: 367 IQDSINKIQLILG-EESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLT 425
++++ + I I+ EE + + L + +V
Sbjct: 391 LKENRDYILDIVDLEEEKYRETLERG-----------------------KRIV------- 420
Query: 426 KQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTL-CHEAFEQKLNELKERSK 484
++LA+ EI D LYD++G+ I++E+A K + + + F + E E+++
Sbjct: 421 ERLAK--KKEEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAE 478
Query: 485 AKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCID 544
+ V + + LK P T + ++ D + + L VI + V
Sbjct: 479 EEEEEPVVEEER--LKDLPET----EKLFYEDPYMREFEAKVLG------VIDNYV---- 522
Query: 545 KHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVE 604
+ D+T Y GGQ D GV + +
Sbjct: 523 --------------------------VLDQTAFYPEGGGQPADTGV-----LIVDGKGYK 551
Query: 605 IGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL- 663
+ ++ + G IVH V+ G R E+D R MR HT +H++ AA R+VL
Sbjct: 552 VVDVQKVGGVIVH---VLEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLG 608
Query: 664 TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPF 723
+Q + D+ LD + Y + ++ + V +E+ N+++ V M +E
Sbjct: 609 DHVWQAGAQKTVDKARLDITHY-KRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQ 667
Query: 724 LTHLTVIPGEIYPDDVI-LIDISDKENVISREPCCGTHVFNTGHI 767
+ G + P I +++I D +V E C GTHV NTG I
Sbjct: 668 KYGFRLYQGGVPPGKTIRVVEIGDW-DV---EACGGTHVSNTGEI 708
Score = 42.9 bits (102), Expect = 8e-04
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 841 GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFND-----YYKRDA 895
GL P P + SQ CIR+ ND+ GR H T FEM+ + +FN Y+K +
Sbjct: 110 GLVPPPANPLVISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDET 165
Query: 896 CRMALEFLTK 905
EF TK
Sbjct: 166 VEYCFEFFTK 175
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 77.8 bits (192), Expect = 6e-16
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 24/215 (11%)
Query: 569 GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEG-KIVHFGNVVSSFKV 627
++ D+T Y T GGQ D G G + E + +G +IVH + KV
Sbjct: 26 EIVLDRTIFYPTGGGQPGDTGTLIW------AGGEYVVEDVTKDGEEIVHVLAEHAKLKV 79
Query: 628 TPGLTSRVEVD--ARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVY 685
G ++++D R R MR HT HLL+A L +V + D +DF
Sbjct: 80 --GDKVKLKIDWERRYRH--MRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGE 134
Query: 686 GETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPD---DVILI 742
++ VE N+++ + V + E L L + ++ PD + ++
Sbjct: 135 DTEDEIE---EVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIV 191
Query: 743 DISDKENVISREPCCGTHVFNTGHIESCTVIGYKS 777
+I D I +PC GTHV NTG I ++ +
Sbjct: 192 EIGD----IDVQPCGGTHVKNTGEIGEIKILKTEK 222
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 41.3 bits (98), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 751 ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 785
+ C GTHV NTG I + ++ S N G++ I
Sbjct: 9 FDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRI 43
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 45.5 bits (108), Expect = 4e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 570 LIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFK--- 626
L+ D+T + GGQ D G ++ + ++ +G + H+G S
Sbjct: 5 LVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDV---RRKDGVVYHYGVFEGSNPESA 61
Query: 627 --VTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRV 662
G V VD R R H+ HLL+ + RV
Sbjct: 62 SPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARV 99
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 38.1 bits (90), Expect = 6e-04
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 751 ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 785
S E C GTHV NTG I + ++ G++ I
Sbjct: 9 FSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|179490 PRK02877, PRK02877, hypothetical protein; Provisional.
Length = 106
Score = 33.2 bits (76), Expect = 0.15
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 400 VKTQPELEQFNIMEEPGLVLGVKYLTKQLARD--PSITEISGDMAFTLYDTYGLSKNIIQ 457
T P LE I+E G+V G L + RD I +I G G S +
Sbjct: 3 FSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG----------GRSGAYEK 52
Query: 458 ELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDL 496
EL A+++ AFE EL E+++A A V ID+
Sbjct: 53 ELRKAREI-----AFE----ELGEQARALGADAVVGIDI 82
>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit,
Proteobacterial. This model represents DnaQ, the DNA
polymerase III epsilon subunit, as found in most
Proteobacteria. It consists largely of an exonuclease
domain as described in Pfam model pfam00929. In
Gram-positive bacteria, closely related regions are
found both in the Gram-positive type DNA polymerase III
alpha subunit and as an additional N-terminal domain of
a DinG-family helicase. Both are excluded from this
model, as are smaller proteins, also outside the
Proteobacteria, that are similar in size to the epsilon
subunit but as different in sequence as are the
epsilon-like regions found in Gram-positive bacteria
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 225
Score = 33.1 bits (76), Expect = 0.51
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 296 LDTSYRMLSDYSRMI-TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSY 354
L + + + ++ R+I T+A+A FP L DAL FKV +
Sbjct: 104 LGPTIKKIGEFCRVIDTLAMARERFPGQRNSL-----DALC---KRFKVDNSHRTLHGAL 155
Query: 355 NIAEILGDVYPEI---QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
A +L +VY + Q+S+ + L + A +K L P +
Sbjct: 156 LDAHLLAEVYLALTGGQESLLE--LAESNSGEAAKPSKSAEMKLGATLRVLAPREAELQA 213
Query: 412 MEE 414
E
Sbjct: 214 HEA 216
>gnl|CDD|164862 PHA01631, PHA01631, hypothetical protein.
Length = 176
Score = 32.2 bits (73), Expect = 0.73
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 676 DECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASE-----LPFLTHLTVI 730
DE D+ V +T + + + KY +I + R +R ++ + F ++
Sbjct: 14 DELDFDYVVVDKTFNDMTECQIPKYQEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNI--- 70
Query: 731 PGEIYPDDVILIDISD 746
DD+I I SD
Sbjct: 71 -----EDDIIAIIDSD 81
>gnl|CDD|226023 COG3492, COG3492, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 104
Score = 29.9 bits (67), Expect = 1.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 457 QELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHF 502
QEL+ ++ L AF + + L+ER S+V +IDLM+L F
Sbjct: 4 QELSEEQRDRLEAAAFRRLVEHLQER------SDVQNIDLMNLAGF 43
>gnl|CDD|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy
production and conversion].
Length = 383
Score = 31.1 bits (70), Expect = 2.6
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 36/173 (20%)
Query: 370 SINKIQLILGEESRIFDNLRKAAVKEW--------KPLVKTQPELEQF---NIMEEPGLV 418
SI K L++ E R + +E+ K KT+ L I+E +V
Sbjct: 116 SIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRGSLSDISLGIIVEREDVV 175
Query: 419 LGVKYLTK-----QLARDP----------------SITEISGDMAFTLYDTYGLSKNI-- 455
G ++LT A P S +++ D + L+ Y K
Sbjct: 176 EGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEED 235
Query: 456 IQELAAAKKLTLCHEAFEQKLNE--LKERSKAKAASNVPDIDLMDLKHFPVTD 506
+ +A +K + L+E + ER +A + + LM H +T+
Sbjct: 236 FRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAMEKILMRFAHVALTE 288
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.8 bits (72), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 316 DNMFPDATAKLRNVVRDALLISEDVFKVKQ---GKLVKE 351
D+M D T LR+ VR +L+S D+ V+ GK VKE
Sbjct: 1293 DSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKE 1331
>gnl|CDD|177607 PHA03370, PHA03370, virion protein US2; Provisional.
Length = 269
Score = 30.6 bits (69), Expect = 3.7
Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 40/134 (29%)
Query: 96 YHHTFFEMLGNWSFNDYY--KRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGL--- 150
Y E+ GN S++ + D CR A+E +PL + G+
Sbjct: 118 YLMLESEVSGNHSYSLWIVGAADICRPAIE-------QIPLPKRLLAIKVPGTWSGMPWA 170
Query: 151 --------------PCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY 196
P + T D + H + GMKC + +GS E+
Sbjct: 171 IPDGIQTLLTSTWEPKFDTTED--------KAHFEDSGMKCVYKIIGSPPDPPKPPEL-- 220
Query: 197 DMKGEPSSALARVN 210
EPS + N
Sbjct: 221 ----EPSKDSSCPN 230
>gnl|CDD|222970 PHA03072, PHA03072, putative viral membrane protein; Provisional.
Length = 190
Score = 29.6 bits (67), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELE 407
Q S N + L + +RI K VK W+PLV+++ +LE
Sbjct: 48 FQTSDNSVFSELTKYARI-----KNNVKSWRPLVESKTKLE 83
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal. This
domain is often found in association with the kinase
domains pfam00069 or pfam07714. In many proteins it is
duplicated. It contains six conserved cysteines which
are involved in disulphide bridges. It has a role in
salt stress response and has antifungal activity.
Length = 106
Score = 28.2 bits (63), Expect = 6.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 655 LNAALRRVLT-CTYQKSCRVFSDECALDFSVY 685
L A+ + C +K R++ D C L + Y
Sbjct: 73 LATAVSELRRCCPNKKGGRIWYDSCFLRYESY 104
>gnl|CDD|153274 cd07590, BAR_Bin3, The Bin/Amphiphysin/Rvs (BAR) domain of Bridging
integrator 3. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Bridging
integrator 3 (Bin3) is widely expressed in many tissues
except in the brain. It plays roles in regulating
filamentous actin localization and in cell division. In
humans, the Bin3 gene is located in chromosome 8p21.3, a
region that is implicated in cancer suppression.
Homozygous inactivation of the Bin3 gene in mice led to
the development of cataracts and an increased likelihood
of lymphomas during aging, suggesting a role for Bin3 in
lens development and cancer suppression. BAR domains
form dimers that bind to membranes, induce membrane
bending and curvature, and may also be involved in
protein-protein interactions.
Length = 225
Score = 29.6 bits (67), Expect = 6.5
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 310 ITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEI-------LGD 362
++ LA + +LRN+V D + K V+EL I + L
Sbjct: 51 LSQDLASGPLCEDNDELRNLVEAL-----DSVTTQLDKTVQELVNLIQKTFIEPLKRLRS 105
Query: 363 VYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKP--LVKTQPELEQF 409
V+P + +I + + L E R+ + K A KE L K + +
Sbjct: 106 VFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKAL 154
>gnl|CDD|146144 pfam03356, Pox_LP_H2, Viral late protein H2. All Members of this
family show similarity to the vaccinia virus late
protein H2. This protein is often referred to by its
gene name of H2R. Members from this family all belong to
the viral taxon Poxviridae.
Length = 189
Score = 29.2 bits (66), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELE 407
Q S N + L + +RI K +K WKPLV+++ ++E
Sbjct: 48 FQTSDNSVLSELAKYARI-----KNNIKSWKPLVESKTKIE 83
>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease
domain of the epsilon subunit of Escherichia coli DNA
polymerase III and similar proteins. This subfamily is
composed of the epsilon subunit of Escherichia coli DNA
polymerase III (Pol III) and similar proteins. Pol III
is the main DNA replicating enzyme in bacteria,
functioning as the chromosomal replicase. It is a
holoenzyme complex of ten different subunits, three of
which (alpha, epsilon, and theta) compose the catalytic
core. The Pol III epsilon subunit, encoded by the dnaQ
gene, is a DEDDh-type 3'-5' exonuclease which is
responsible for the proofreading activity of the
polymerase, increasing the fidelity of DNA synthesis. It
contains three conserved sequence motifs termed ExoI,
ExoII and ExoIII, with a specific Hx(4)D conserved
pattern at ExoIII. These motifs are clustered around the
active site and contain four conserved acidic residues
that serve as ligands for the two metal ions required
for catalysis. The epsilon subunit of Pol III also
functions as a stabilizer of the holoenzyme complex.
Length = 167
Score = 28.7 bits (65), Expect = 9.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 301 RMLSDYSRMI-TVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEI 359
+ + D+ R+I T+ALA FP L DAL F + + AE+
Sbjct: 107 KKIIDFCRVIDTLALARKKFPGKPNSL-----DALC---KRFGIDNSHRTLHGALLDAEL 158
Query: 360 LGDVYPE 366
L +VY E
Sbjct: 159 LAEVYLE 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,080,259
Number of extensions: 4666379
Number of successful extensions: 3698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3602
Number of HSP's successfully gapped: 52
Length of query: 925
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 819
Effective length of database: 6,236,078
Effective search space: 5107347882
Effective search space used: 5107347882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.1 bits)