RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6339
(925 letters)
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 420 bits (1081), Expect = e-138
Identities = 169/494 (34%), Positives = 251/494 (50%), Gaps = 82/494 (16%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
+ IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL Y R
Sbjct: 4 TAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPV-SL 132
SQ+CVR GGKHNDL G + HHTFFEMLGN+SF DY+K DA A LT +L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKC-------NFWEMGS 184
P +RL+ T + D+E +IW E+G+PR+ I + G NFW+MG
Sbjct: 123 PKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGD 174
Query: 185 TGPCGYSSEIHYDM-----KGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLS 239
TGPCG +EI YD G P S D + IEIWNIVF+ R + T+ PL
Sbjct: 175 TGPCGPCTEIFYDHGDHIWGGPPGS----PEEDGDRYIEIWNIVFMQFNRQADGTMEPLP 230
Query: 240 KNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTS 299
K +DT +G ER+ +LQ+ S YD DLF L++ + KV+GA + S
Sbjct: 231 KPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS-----------NKS 279
Query: 300 YRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLVKE 351
R+++D+ R +AD + P + LR ++R A +L +++ F K LV
Sbjct: 280 LRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYK---LVGP 336
Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
L +++G +++ +++ +L E E EQF
Sbjct: 337 L----IDVMGSAGEDLKRQQAQVEQVLKTE-----------------------E-EQFAR 368
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
E GL L L ++LA+ + G+ AF LYDTYG ++ ++ + + +
Sbjct: 369 TLERGLAL----LDEELAKLSG-DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 423
Query: 472 FEQKLNELKERSKA 485
FE + E + R++
Sbjct: 424 FEAAMEEQRRRARE 437
Score = 175 bits (446), Expect = 1e-47
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P+ D ++ F N+GM QFK+VFLGL Y R SQ+C+R GGKHNDL G + HHT
Sbjct: 29 VPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPV-SLPLDRLYFT 918
FFEMLGN+SF DY+K DA A LT +LP +RL+ T
Sbjct: 89 FFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVT 130
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 413 bits (1063), Expect = e-135
Identities = 175/481 (36%), Positives = 257/481 (53%), Gaps = 67/481 (13%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
+ IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 5 AHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLP 133
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ + LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLP 122
Query: 134 LDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKCNFWEMGSTGPCGYSS 192
++LY + + DEE IW +G+P + I + G + NFW+MG GPCG SS
Sbjct: 123 KEKLYVSVYKD--------DEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSS 174
Query: 193 EIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERL 252
EI+ D GE +R +EIWN+VF+ + R + PL IDTG+G ER+
Sbjct: 175 EIYVDR-GEEYE-----GDER--YLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERI 226
Query: 253 VTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITV 312
++LQ K S ++ D+ PL++ E+VSG K YG F T D + R+++D+ R IT
Sbjct: 227 ASVLQGKNSNFEIDIIFPLIQFGEEVSG-KKYGEKFET------DVALRVIADHLRAITF 279
Query: 313 ALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLVKELSYNIAEILGDVY 364
A++D + P + +R ++R A L E+ F K V + +I+ + Y
Sbjct: 280 AISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLY---KGVDLV----VDIMKEPY 332
Query: 365 PEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYL 424
PE++ S ++ I+ E E ++F + G+ + +
Sbjct: 333 PELELSREFVKGIVKGE-------------E-----------KRFIKTLKAGMEYIQEVI 368
Query: 425 TKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 484
K L +SG FT YDTYG ++I E+A K L + E F+ +L E +ER++
Sbjct: 369 QKALEEGR--KTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
Query: 485 A 485
Sbjct: 427 K 427
Score = 170 bits (432), Expect = 1e-45
Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 30 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 89
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFT 918
FFEMLGN+SF DY+K++A A EF+T+ + LP ++LY +
Sbjct: 90 FFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVS 129
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 369 bits (950), Expect = e-115
Identities = 147/834 (17%), Positives = 272/834 (32%), Gaps = 211/834 (25%)
Query: 14 SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRV 72
+R +L++F +GH ++ P+V I + + F+ G+ P P +
Sbjct: 62 LDEMREYYLNFF-ERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120
Query: 73 ANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFND-----YYKRDACRMALEFLTK 127
SQ C+R+ +DL GR H T FEM+ + +FN Y+K + E L
Sbjct: 121 TISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN- 175
Query: 128 PPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHI-KKEGMKCNFWEMGSTG 186
ELGV ++ I KE W G G
Sbjct: 176 ----------------------------------ELGVKKEDIVYKE----EPWAGG--G 195
Query: 187 PCGYSSEIHYD-----------MKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTI 235
G E ++ P + ++ N + + +
Sbjct: 196 NAGPCLEAIVGGLEVATLVFMNLEEHPEGDI---EIKGARYRKMDNYIVDTGYGLERFVW 252
Query: 236 VPLSKNYIDTGLGFERLVTILQ--NKTSTYDTDLFLPLLETIEKVSG------------- 280
+ + E + TI+ N + + + ++ K++G
Sbjct: 253 ASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQL 312
Query: 281 ----AKPYGRTFTTSNRTDL-DTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRD 332
A G + + L+D++R I L D + P R ++R
Sbjct: 313 RKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRR 372
Query: 333 AL----LISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNL 388
+L + + LV+ +ILG + ++ +I + E+ R +
Sbjct: 373 SLRLAEELELGLDLY---DLVEMH----KKILGFEFDVPLSTVQEI--LELEKERYRTTV 423
Query: 389 RKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDT 448
K G + + + + R ++ D LYD+
Sbjct: 424 SK-----------------------------GTRLVERLVERK---KKLEKDDLIELYDS 451
Query: 449 YGLSKNIIQELAAAKKLTLCHEA-FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDD 507
+G+ + +AA K + +L + + A+ I L + +P T+
Sbjct: 452 HGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSK--AEKVQEK-KITLQN--EYPATEK 506
Query: 508 KYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAW 567
Y YD + V V GD V
Sbjct: 507 LY-----YDDPTLLE-----FEAEVIGVEGDFV--------------------------- 529
Query: 568 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKV 627
I +++ Y +GGQ +D+G L GK E+ ++ +G ++H VV K
Sbjct: 530 ---ILNRSAFYPESGGQDNDVGY--LIA---NGGKFEVVDVLEADGVVLH---VVKGAKP 578
Query: 628 TPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYG 686
G + +D+ +R MR H+ +H+L +L++VL +Q R + LD + +
Sbjct: 579 EVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHF- 637
Query: 687 ETLSVDSVAAVEKYINDVIANQVQVDRRHMRASE--------LPFLTHLTVIPGEIYPDD 738
S + + +E N I + M E L + G
Sbjct: 638 RRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRL-YQ------GGVPPGRK 690
Query: 739 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDS 792
+ ++ + D + C GTH +TG I ++ +S GV + G++
Sbjct: 691 IRVVQVGD-----DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739
Score = 133 bits (338), Expect = 2e-32
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876
+ I + + F+ G+ P P + SQ CIR+ +DL GR H
Sbjct: 87 VARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDLDSVGRTGRHL 142
Query: 877 TFFEMLGNWSFND-----YYKRDACRMALEFLTKPPVSLPLDRLYF 917
T FEM+ + +FN Y+K + E L + + + + + +
Sbjct: 143 TLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNE--LGVKKEDIVY 186
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 293 bits (750), Expect = 6e-87
Identities = 144/835 (17%), Positives = 271/835 (32%), Gaps = 204/835 (24%)
Query: 17 IRSSFLDYF--CNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRVA 73
+R FL +F H V P++P D + V + + F+ V G P +
Sbjct: 62 MREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLV 121
Query: 74 NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFND-----YYKRDACRMALEFLTKP 128
SQ +R D+ G H T FEM+ + +FN Y+ + +A EF TK
Sbjct: 122 ISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK- 176
Query: 129 PVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPC 188
EL + + I + N W G G
Sbjct: 177 ---------------------------------ELXMXPEDITFKE---NPWAGG--GNA 198
Query: 189 GYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISH------------KRVSADTIV 236
G + E+ Y +E+ +VF+ + + + +
Sbjct: 199 GPAFEVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYI 240
Query: 237 PLSKNYIDTGLGFERLVTILQNKTSTYDTDLFL----------------PLLETIEKVSG 280
P+ +DTG G ERLV + Q + YD L +L +++G
Sbjct: 241 PMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAG 300
Query: 281 AKPYGRTFTTSNRTDL------------------DTSYRMLSDYSRMITVALADNMFPDA 322
+ ++D+++ +T LAD + P
Sbjct: 301 MFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360
Query: 323 TAK---LRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILG 379
R ++R ++ ++ + E+ L +PE + + I ++
Sbjct: 361 VXAGYLARLLIRKSIRHLR---ELGLEVPLSEIVALHIXELHKTFPEFXEMEDIILEMIE 417
Query: 380 EESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISG 439
E + + + + + + I EI
Sbjct: 418 LEEKXYAETLRRGSDLVRREIAK--------------------------LKKKGIKEIPV 451
Query: 440 DMAFTLYDTYGLSKNIIQELAAAKKLTL-CHEAFEQKLNELKERSKAKAASNVPDIDLMD 498
+ T Y+++GL+ I+ E+A + + + + F + + ER+K + + D +L+
Sbjct: 452 EXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFELLK 511
Query: 499 LKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASID 558
+ Y+ D + D ++ ++
Sbjct: 512 ------DLPDTRRLYYEDPFMXEF-----DAXVLRVIXD--------------------- 539
Query: 559 SIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHF 618
+I D T Y GGQ D GV +V + + + I+H
Sbjct: 540 ----------WVILDATAFYPEGGGQPYDTGV-----LIVNGREVXVTNVQXVGXVIIH- 583
Query: 619 GNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDE 677
V G+ +D R+ MR HT +H+L AL RVL +Q ++ +D
Sbjct: 584 -XVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDW 642
Query: 678 CALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVI-PGEIYP 736
LD S Y +S + + +E N ++ V + + + G +
Sbjct: 643 ARLDISHY-XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPG 701
Query: 737 DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGD 791
++ ++ I D + C GTH+ +TG + ++ + GV I G+
Sbjct: 702 REIRVVXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752
Score = 99.4 bits (246), Expect = 2e-21
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 818 IPYGDDSIAFVNSGMCQFKN-VFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHH 876
+P D + V + + F+ V G P + SQ IR D+ G H
Sbjct: 87 LPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIR----FTDIDNVGITGRHF 142
Query: 877 TFFEMLGNWSFND-----YYKRDACRMALEFLTKPPVSLPLDRLYF 917
T FEM+ + +FN Y+ + +A EF TK + + + + F
Sbjct: 143 TIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK-ELXMXPEDITF 187
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 118 bits (298), Expect = 5e-30
Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 35/245 (14%)
Query: 557 IDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGV---AYLTNTTQENGKVEIGELASLEG 613
I+ +++ V + D+T + GGQ+ D+G+ + + +E GK
Sbjct: 21 IEVKEIDGKFHV--LLDQTAFFPGGGGQMGDLGLIDGIKVLDVYEEEGK----------- 67
Query: 614 KIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRV 673
+ H + + E+D R M+ H HLL+ + +
Sbjct: 68 -VYHVLEK----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFG-ANTCGFHL 121
Query: 674 FSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGE 733
+ +D + L ++ EK N +I ++V EL T
Sbjct: 122 GKEISTVDIVGF---LDEKTIREAEKEANRLIFENLEVKSYAPSKKEL--KKVKTRRALP 176
Query: 734 IYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSS 793
+++ +++I + CCG H NT ++ + ++ + + R I+ + G
Sbjct: 177 KTDEEIRIVEIVG----LDLNACCGVHPRNTRDLQVIKIRRWEKHKNATR-IEYVAG--- 228
Query: 794 KAAVE 798
AV
Sbjct: 229 NRAVS 233
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 96.9 bits (242), Expect = 7e-23
Identities = 44/224 (19%), Positives = 68/224 (30%), Gaps = 46/224 (20%)
Query: 568 VGLIFDKTNLYATAGGQIDDIGVAYLTNT----TQENGKVEIGELASLEGKIVHFGNVVS 623
++ D+T Y T GGQ D G + ++ EG + H
Sbjct: 28 NAILLDQTIFYPTGGGQPHDRGT--INGVEVLDVYKDE----------EGNVWHVVKEPE 75
Query: 624 SFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALD 681
FKV G +++D R MR HT HLL L VL + ++ D
Sbjct: 76 KFKV--GDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYD 133
Query: 682 FSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVIL 741
+ E L+ + N + ++ + D
Sbjct: 134 IAYP-ENLN-KYKEQIISLFNKYV--------DEGGEVKI------------WWEGDRRY 171
Query: 742 IDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 785
I D PC GTHV + I + S G + +
Sbjct: 172 TQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRL 211
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 72.3 bits (178), Expect = 6e-15
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 20/137 (14%)
Query: 641 MRLGCMRAHTTSHLLNAALRRVLT--CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVE 698
M +R H+ H++ A+ +VL + S V ++ L S + + +E
Sbjct: 1 MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFD-RKPSDEEIREIE 59
Query: 699 KYINDVIANQVQVDRRHM---RASELPFLTHLTVIPGEIYPDDVILIDISDKENVI---- 751
+ N+ + + + A ++ F GE D + + V+
Sbjct: 60 RLANEKVKENAPIKIYELPREEAEKM-F--------GEDMYDLFPVPEDVRILKVVVIED 110
Query: 752 -SREPCCGTHVFNTGHI 767
+ C H TG I
Sbjct: 111 WNVNACNKEHTKTTGEI 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 1e-12
Identities = 108/644 (16%), Positives = 187/644 (29%), Gaps = 202/644 (31%)
Query: 225 ISHKRVSADTIVPLSKNYIDTGLGF------ERLVTILQNKTSTYDTDLFLPLLETIEKV 278
+SH + +VP T F E+ IL T + D E
Sbjct: 11 LSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGFAAD--------DEPT 55
Query: 279 SGAKPYGR--TFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNV--VRDAL 334
+ A+ G+ + +S + +++ + L + F + + ++ + L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVG-----QFDQVLNLCLTE--FENCYLEGNDIHALAAKL 108
Query: 335 LISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVK 394
L D VK +L+K +Y A I+ +K S +F AV
Sbjct: 109 LQENDTTLVKTKELIK--NYITARIMAK------RPFDK-----KSNSALFR-----AVG 150
Query: 395 EWKPLVKTQPELEQFNIMEEPGLVLG-----VKYLTKQLARDPSITEISGDMAFTLYDTY 449
E ++ + G Y ++L RD LY TY
Sbjct: 151 E-----------GNAQLV----AIFGGQGNTDDYF-EEL-RD-------------LYQTY 180
Query: 450 GLSKNIIQEL--AAAKKL-TL------CHEAFEQKLNE---LKERSK-------AKAASN 490
++ +L +A+ L L + F Q LN L+ S +
Sbjct: 181 ---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 491 VPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRH 550
P I ++ L H+ VT + R + G+V AI
Sbjct: 238 CPLIGVIQLAHYVVTAKL----LGFTPGELRSYLKGATGHSQGLVTA--------VAIAE 285
Query: 551 ARSGASIDSIQ---LEHNAWVGL----IFDKTNL------YATAGGQ--------IDDIG 589
S S + ++G+ + T+L + + I ++
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 590 VAYL------TNTT-QENGKVEI------------GELASLEGKIVHFGNVVSSFKVTPG 630
+ TN+ +VEI G SL G + K G
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA----KAPSG 401
Query: 631 L-TSRVEVDARMRLGCMR-----A--HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDF 682
L SR+ R R + H SHLL A + + + + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSF--NAKDIQI 457
Query: 683 SVY----GETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVI---PGEIY 735
VY G L + I++ I + + + TH ++ PG
Sbjct: 458 PVYDTFDGSDL-----RVLSGSISERIVDCIIRLPVKWETTTQFKATH--ILDFGPGG-- 508
Query: 736 PDDVILIDISDKENVISREPC-CGTHVFNTGHIESCTV--IGYK 776
S + R G V G ++ G+K
Sbjct: 509 --------ASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 65.1 bits (158), Expect = 1e-10
Identities = 90/567 (15%), Positives = 162/567 (28%), Gaps = 214/567 (37%)
Query: 8 SYV-RLCSKSIRSSF-------LDYFCNT--QG---HTLVKSSPIVPYGDDSIAFVNSGM 54
YV L S F L F N +G H L ++ V +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL----QENDTTLVKTKE 121
Query: 55 CQFKNVF--LGLTPAPYPRVANS-------QKCVRV----GGKHN------DLSCAGRDS 95
KN + P+ + +NS + ++ GG+ N +L RD
Sbjct: 122 L-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----RDL 176
Query: 96 YH----------HTFFEMLGN-----WSFNDYYKR--DACRMALEFLTKP---------- 128
Y E L + + + LE+L P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI----LEWLENPSNTPDKDYLL 232
Query: 129 --PVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK--------------- 171
P+S PL + Y + + + G R ++K
Sbjct: 233 SIPISCPL--IGVIQLA---HYVVTA----KLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 172 -------------KEGMKCNFWEMG-----STGPCGYSSEIHYD----MKGEPSSALARV 209
++ + F+ +G + I D +G PS L+
Sbjct: 284 AETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 210 NADRNDL---IEIWNIVFISHKRVSADTIVPL---SKNYIDTG----LGFERLVTILQNK 259
N + + + N + K+V + L +KN + +G L L L+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVE----ISLVNGAKNLVVSGPPQSL--YGLNLTLRKA 396
Query: 260 TSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRML-------SDYSRMITV 312
+ D ++ P+ S R L S R L S
Sbjct: 397 KAPSGLD--------QSRI----PF------SERK-LKFSNRFLPVASPFHSHL------ 431
Query: 313 ALADNMFPDATAKLRN-VVRDALLIS-ED----VFKVKQGKLVKELSYNIAEILGDVYPE 366
L A+ + +V++ + + +D V+ G ++ LS +I+E +
Sbjct: 432 -LV-----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI------ 479
Query: 367 IQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPE--LEQFNIMEEPGLVLGVKYL 424
+ I+ + W+ + + L+ F PG G+ L
Sbjct: 480 -------VDCII--RLPVK----------WETTTQFKATHILD-FG----PGGASGLGVL 515
Query: 425 TKQLARDPSITEI-SGDMAFTLYDTYG 450
T + + I +G + D YG
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 44.3 bits (104), Expect = 2e-04
Identities = 61/341 (17%), Positives = 103/341 (30%), Gaps = 112/341 (32%)
Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLS-KNIIQELAAAKKLTLCHE 470
M G+ L Y T + A+D + DTYG S +I+ LT+ H
Sbjct: 1631 M---GMDL---YKTSKAAQD--VWN---RADNHFKDTYGFSILDIVIN--NPVNLTI-H- 1675
Query: 471 AFE-QKLNELKERSKAKAASNVPDIDLMDLKHFP-VTDDKYKYDYHYDT---NSKRYTFP 525
F +K ++E A + D L K F + + Y + + ++ ++T P
Sbjct: 1676 -FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 526 CLDTNLV------------GIVIGDQVFCIDKHAIRHARSGASIDSIQL-EHNAWVGLIF 572
L + G++ D F G S L E+ A
Sbjct: 1735 AL---TLMEKAAFEDLKSKGLIPADATFA-----------GHS-----LGEYAA------ 1769
Query: 573 DKTNLYATAGG-QIDDIGVAYLT----NTTQENGKVEIGELASLEGKIVHFGNVVSSFKV 627
L + A I+ + + T Q V EL ++ +
Sbjct: 1770 ----LASLADVMSIES--LVEVVFYRGMTMQV--AVPRDELGRSNYGMI---------AI 1812
Query: 628 TPGLTSRVEVDARMRLGCMR-AHTTSHLL-----NAALRRVLTCTYQKSCRVFSDECALD 681
PG + ++ R T L+ N Y V A
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-----NQQY-----V----AA-- 1856
Query: 682 FSVYGETLSVDSVAAVEKYIN----DVIANQVQVDRRHMRA 718
G+ ++D+V V +I D+I Q + +
Sbjct: 1857 ----GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 41.6 bits (97), Expect = 0.001
Identities = 50/345 (14%), Positives = 95/345 (27%), Gaps = 135/345 (39%)
Query: 196 YDMKGEPSSALARVNADRNDLIEIWN---IVFISHKRVSADTIV---PLSKNYIDTGLGF 249
Y +S A+ ++WN F S IV P++ G
Sbjct: 1636 YK-----TSKAAQ---------DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 250 ERLVTILQNKTS-TYDTD---------LFLPLLETIEKVSGAKPYGRTFTTSNRTD---L 296
+R I +N ++ ++T +F + E + G T T
Sbjct: 1682 KR---IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-TQPALT 1737
Query: 297 DTSYRMLSD--------------------YSRMITVALADNMFPDATAKLRNVVRDALLI 336
D Y+ + +LAD M ++ ++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL--ASLADVMSIESLVEV---------- 1785
Query: 337 SEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEW 396
VF +G ++ E+ Y I + ++ +E+ + + K
Sbjct: 1786 ---VF--YRGMTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEA--LQYVVERVGKRT 1837
Query: 397 KPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNII 456
LV E+ +N+ +Q +GD
Sbjct: 1838 GWLV----EIVNYNV---EN---------QQYV-------AAGD---------------- 1858
Query: 457 QELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKH 501
L A +T LN +K + ID+++L+
Sbjct: 1859 --LRALDTVTNV-------LNFIKLQK----------IDIIELQK 1884
Score = 32.7 bits (74), Expect = 0.82
Identities = 38/241 (15%), Positives = 64/241 (26%), Gaps = 70/241 (29%)
Query: 715 HMRASEL--PFLTHLTVIPGEIYPDDVILIDISDKENVISR---------EPCCGTH--- 760
AS+L F L DD + + ++ + EP
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADD----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 761 ----VFNTGHIESCTVIGYKSYN--HGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILN 814
E+C Y N H + L ++ V K ++
Sbjct: 83 VLNLCLT--EFENC----YLEGNDIHAL--AAKLLQENDTTLV---KTKELIKNYITARI 131
Query: 815 VGNIPYGD--DSIAF--VNSGMCQFKNVFLG----------L-----TPAPYPRVANSQK 855
+ P+ +S F V G Q +F G L T
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-----GD 186
Query: 856 CIRVGGKH-NDLSFAGRDS---YHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLP 911
I+ + ++L D+ + + W N D ++L P+S P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDK-----DYLLSIPISCP 239
Query: 912 L 912
L
Sbjct: 240 L 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 3e-09
Identities = 96/639 (15%), Positives = 171/639 (26%), Gaps = 202/639 (31%)
Query: 96 YHHTFFEM----LGNWS----FNDYYKRDA-CRMALEFLTKPPVSLPLDRLYFTYFGGSD 146
+HH FE F D + + C+ + +D +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-------- 55
Query: 147 QYGLPCDEET--RDIWLELGVPRDHIKK---EGMKCNF-WEMGSTGPCGYSSEIHYDMKG 200
R W L + ++K E ++ N+ + M S I + +
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM---------SPIKTEQR- 103
Query: 201 EPSSALARVNADRNDLIEIWNI--VFISHKRVSADTIVPLSK--------NYI----DTG 246
+PS R+ L +N VF + + L + + G
Sbjct: 104 QPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 247 LGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTF--TTSNRTDLDTSYRMLS 304
G KT + L + + KV + F N +T ML
Sbjct: 161 SG----------KTW-----VALDVCLS-YKVQCKMDFK-IFWLNLKNCNSPETVLEMLQ 203
Query: 305 DYSRMITVALADNMFPDATAKLR-NVVRDALLISEDVFKVKQGKLVKELSYNIA-EILGD 362
I + KLR + ++ L +L+K Y +L +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----------RLLKSKPYENCLLVLLN 252
Query: 363 VY-PEIQDSIN---KIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLV 418
V + ++ N KI L+ ++ D L A L L +
Sbjct: 253 VQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKY 310
Query: 419 LGVKY--LTKQ-LARDP----SITEISGDMAFTL--YDTYGLSK--NIIQ------ELAA 461
L + L ++ L +P I E D T + K II+ E A
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 462 AKKL----------------TLC-------HEAFEQKLNELKERSKAKAASN-----VPD 493
+K+ L +N+L + S + +P
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 494 IDLMDLK---------H------------------FPVTDDKYKYD---YHYDT--NSKR 521
I L +LK H P D+Y Y +H + +R
Sbjct: 431 IYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 522 YT-FPCLDTNL---------VGI----------VIGD----QVFCIDKHAIRHARSGASI 557
T F + + + + + D A +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 558 D-SIQLEHNAW---------VGLIFDKTNLYATAGGQID 586
D ++E N + L+ + ++ A Q+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 52.2 bits (124), Expect = 7e-07
Identities = 67/476 (14%), Positives = 128/476 (26%), Gaps = 147/476 (30%)
Query: 509 YKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVF---------CID-KHAIRHARSGASID 558
+ + +H D + + + D I+ VF C D + + S ID
Sbjct: 1 HHHHHHMDFETGEHQYQYKD-----IL---SVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 559 SIQLEHNAWVG--LIFD-----KTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL 611
I + +A G +F + + ++ I +L + + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 612 EGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRR----VL---- 663
+ N F SR++ ++R LL LR ++
Sbjct: 113 IEQRDRLYNDNQVF--AKYNVSRLQPYLKLR---------QALLE--LRPAKNVLIDGVL 159
Query: 664 ----TCTYQKSCRVFSDECALDFSVY----GETLSVDSVAAVEKYINDVIANQVQVDRRH 715
T C + +C +DF ++ S ++V + + + I H
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 716 MRASELPF------LTHLTVIPGEIYPDD-VILIDISDKENVISREPCCGTHVFNTGHIE 768
+L L L + + Y + ++L+++ + + + FN
Sbjct: 220 SSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAW---------NAFNLS--- 265
Query: 769 SCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFV 828
C ++ T + +I S+
Sbjct: 266 -CKIL-------------LTTRFKQVTDFLSAAT------------TTHISLDHHSMTLT 299
Query: 829 NSGMCQFKNVF---LGLTPAPYPRVANSQKCIRVGGKHNDLS---FAGRDSYHHTFFEML 882
+ K++ L P PR N A + L
Sbjct: 300 PD---EVKSLLLKYLDCRPQDLPREV----L-----TTNPRRLSIIAESIR------DGL 341
Query: 883 GNWSFNDYYKRDAC-------RMALEFLTKPPVSLPLD-RLYFT----FPM-VMIP 925
W D +K C +L L P + R F FP IP
Sbjct: 342 ATW---DNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSAHIP 388
Score = 44.5 bits (104), Expect = 2e-04
Identities = 56/333 (16%), Positives = 92/333 (27%), Gaps = 102/333 (30%)
Query: 61 FLGLTPAPYPRVANSQKCVRVGGKHNDLSCAG-----RDSYHHTFFEMLGNWSFNDYYKR 115
+L P PR N + RD L W +
Sbjct: 310 YLDCRPQDLPREV----L-----TTNPRRLSIIAESIRD--------GLATWDNWKHVNC 352
Query: 116 DACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK-KEG 174
D +E SL + L E R ++ L V
Sbjct: 353 DKLTTIIE------SSL--NVLE--------------PAEYRKMFDRLSVFPPSAHIPTI 390
Query: 175 MKCNFWEMGST------------------GPCGYSSEIH-----YDMKGEPSSALARVNA 211
+ W P + I +K E AL R
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS-- 448
Query: 212 DRNDLIEIWNIVFISHKRVSADTIVPLSK-NYIDTGLGFERLVTILQNKTSTYDTDLFLP 270
+++ +NI K +D ++P Y + +G L I + T +FL
Sbjct: 449 ----IVDHYNI----PKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLD 499
Query: 271 L--LETIEKV--SGAKPYGRTFTTSNRTDLDTSYR-MLSD----YSRMITVALADNMFPD 321
LE +K+ + L Y+ + D Y R++ A+ D +
Sbjct: 500 FRFLE--QKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYERLVN-AILDFLPKI 555
Query: 322 AT----AKLRNVVRDALL-----ISEDVFKVKQ 345
+K +++R AL+ I E+ K Q
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 40.6 bits (94), Expect = 0.003
Identities = 88/541 (16%), Positives = 154/541 (28%), Gaps = 191/541 (35%)
Query: 500 KHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNL----VGIVIGD-QVFCIDKHAIRHARSG 554
+ F + Y + P + T + + D QVF K+ + +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPY 137
Query: 555 ASIDS--IQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLE 612
+ ++L V + G G ++ + KV+ ++
Sbjct: 138 LKLRQALLELRPAKNVL-------IDGVLG-----SGKTWVALDVCLSYKVQC----KMD 181
Query: 613 GKI--VHFGNVVS-----------SFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAAL 659
KI ++ N S +++ P TSR + + ++L H + A L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-------HSIQAEL 234
Query: 660 RRVLTCT-YQKS-------------------CRVF---SDECALDFSVYGETLSV----- 691
RR+L Y+ C++ + DF T +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 692 -------DSVAAVEKYIN------------------DVIANQVQ--VDR----RHMRASE 720
+ + + KY++ +IA ++ + +H+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 721 LP-----FLTHLTVIPGE---------IYPDDVILIDISDK------ENVISREPCCGTH 760
L L L P E ++P I +VI +
Sbjct: 355 LTTIIESSLNVLE--PAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDV---MV 406
Query: 761 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPY 820
V N H S K + SI K E H I++ NIP
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLEL--KVKLENEYALH-------RSIVDHYNIPK 457
Query: 821 GDDS---------------IAF--VNSGMCQ----FKNVFLGLTPAPYPRVANSQKCIRV 859
DS I N + F+ VFL R QK IR
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFL-EQK-IR- 508
Query: 860 GGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDAC-------RMA---LEFLTKPPVS 909
H+ ++ S +T ++ +YK C R+ L+FL K +
Sbjct: 509 ---HDSTAWNASGSILNTLQQL-------KFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 910 L 910
L
Sbjct: 559 L 559
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 31.3 bits (70), Expect = 1.6
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 347 KLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKE 395
K++ +L+ +A +L P+I + KI L I +N
Sbjct: 481 KVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDGTVDVA 529
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 29.0 bits (65), Expect = 2.4
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 332 DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIF 385
D LL++ ++G Y + + + + +L++ ESRIF
Sbjct: 35 DCLLVA-TWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIF 87
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 4.3
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 41/147 (27%)
Query: 771 TVIGYKSYNHG----VRSIKCLTGDSSKAAVENGKHLSTAAS-----FS-QILNVGNIPY 820
++ + + G K LTG H AA + QILN G IP
Sbjct: 1360 EMMKHLGRSEGNPVIGVFQKFLTG-----------HPKGAAGAWMMNGALQILNSGIIP- 1407
Query: 821 GDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVG-------GKHN-DLSFAGRD 872
G+ + V+ + QF+ V YP +R G+ D
Sbjct: 1408 GNRNADNVDKILEQFEYV-------LYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPD 1460
Query: 873 SYHHTFFEMLGNWSFNDYYKRDACRMA 899
Y + + +N+Y + + R
Sbjct: 1461 -Y---LYGAITEDRYNEYVAKVSAREK 1483
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,367,456
Number of extensions: 894148
Number of successful extensions: 1737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1674
Number of HSP's successfully gapped: 31
Length of query: 925
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 823
Effective length of database: 3,853,851
Effective search space: 3171719373
Effective search space used: 3171719373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)