RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6339
(925 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 226 bits (577), Expect = 8e-69
Identities = 113/253 (44%), Positives = 151/253 (59%), Gaps = 19/253 (7%)
Query: 12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
L + IR FL +F +GHT VKS+P+VP D ++ FVN+GM FKNVFLGL PY R
Sbjct: 2 LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 60
Query: 72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
+ QKC+RV GKHNDL G S HHTFFEMLGN+SF DY+K++A A EF+T+ +
Sbjct: 61 ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 119
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
LP ++LY + + DEE IW E +G+P + I + G + NFW+MG GPCG
Sbjct: 120 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 171
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
SSEI+ D +EIWN+VF+ + R + PL IDTG+G E
Sbjct: 172 SSEIYVDRG--------EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 251 RLVTILQNKTSTY 263
R+ ++LQ K S +
Sbjct: 224 RIASVLQGKNSNF 236
Score = 102 bits (256), Expect = 4e-25
Identities = 51/89 (57%), Positives = 63/89 (70%)
Query: 818 IPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHT 877
+P D ++ FVN+GM FKNVFLGL PY R + QKC+RV GKHNDL G S HHT
Sbjct: 29 VPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHT 88
Query: 878 FFEMLGNWSFNDYYKRDACRMALEFLTKP 906
FFEMLGN+SF DY+K++A A EF+T+
Sbjct: 89 FFEMLGNFSFGDYFKKEAIEYAWEFVTEV 117
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 78.0 bits (191), Expect = 1e-16
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 264 DTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT 323
+ D+ PL++ E+VSG K YG + + D + R+++D+ R IT A++D + P
Sbjct: 1 EIDIIFPLIQFGEEVSG-KKYG------EKFETDVALRVIADHLRAITFAISDGVIPSNE 53
Query: 324 ---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGE 380
+R ++R A + +L + V + +
Sbjct: 54 GRGYVIRRILRRA------------MRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELS 101
Query: 381 ESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGD 440
+ ++ E ++F + G+ + + K L +SG
Sbjct: 102 REFVKGIVKG--------------EEKRFIKTLKAGMEYIQEVIQKALEEGRKT--LSGK 145
Query: 441 MAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDID 495
FT YDTYG ++I E+A K L + E F+ +L E +ER++ +
Sbjct: 146 EVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVK 200
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 64.9 bits (157), Expect = 6e-13
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
Query: 646 MRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIND 703
+R H+ H++ A+ +VL + S V ++ L + + +E+ N+
Sbjct: 6 VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIR-EIERLANE 64
Query: 704 VIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFN 763
+ + + E + + P+DV ++ + E+ C H
Sbjct: 65 KVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWN-VNACNKEHTKT 123
Query: 764 TGHIESCTVIGYK-SYNHGVRSI 785
TG I + + + G+ I
Sbjct: 124 TGEIGPIKIRKVRFRKSKGLLEI 146
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 64.0 bits (155), Expect = 9e-13
Identities = 26/149 (17%), Positives = 37/149 (24%), Gaps = 24/149 (16%)
Query: 638 DARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAV 697
D R MR HT HLL L VL + + + +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQI 60
Query: 698 EKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCC 757
N + +V D I D PC
Sbjct: 61 ISLFNKYVDEGGEVKIWWEG--------------------DRRYTQIRD----FEVIPCG 96
Query: 758 GTHVFNTGHIESCTVIGYKSYNHGVRSIK 786
GTHV + I + S G + ++
Sbjct: 97 GTHVKDIKEIGHIKKLKRSSIGRGKQRLE 125
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 49.4 bits (117), Expect = 3e-07
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 649 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
H+T+HL+ A++R+ V DF + + +S D +EK + ++
Sbjct: 13 HSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDID-QNISSDDFEQIEKTMKQIVNEN 71
Query: 709 VQVDRRHMRASELPFL----THLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNT 764
++++R+ + E L + + I D+ + + + + + C G HV +T
Sbjct: 72 MKIERKVVSRDEAKELFSNDEYKLELIDAIPEDEN--VTLYSQGDFT--DLCRGVHVPST 127
Query: 765 GHIESCTVIGYKS-YNHGVRSIKCLT 789
I+ ++ Y G + K L
Sbjct: 128 AKIKEFKLLSTAGAYWRGDSNNKMLQ 153
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 37.9 bits (88), Expect = 5e-04
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 558 DSIQLEHNAWV------GLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASL 611
D+ E V ++ D+T Y T GGQ D G + + +
Sbjct: 12 DAYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRG--TINGVEVLDVYKDEE----- 64
Query: 612 EGKIVHFGNVVSSFKV 627
G + H FKV
Sbjct: 65 -GNVWHVVKEPEKFKV 79
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 34.0 bits (77), Expect = 0.031
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 6/123 (4%)
Query: 649 HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
H+ +HLL A++++ T V + D + D A ++ N
Sbjct: 11 HSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNY 70
Query: 709 VQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCC----GTHVFNT 764
+ ++ T I DK + E G HV N
Sbjct: 71 DVIKKKVSW--HEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM 128
Query: 765 GHI 767
Sbjct: 129 RFC 131
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus
cereus [TaxId: 1396]}
Length = 103
Score = 27.0 bits (60), Expect = 3.8
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 399 LVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDP--SITEISGDMAFTLYDTYGLSKNII 456
+V T ++ I+E +V G + + RD S+ ++ G G + +
Sbjct: 2 IVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVG----------GRAGSYE 51
Query: 457 QELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDL 496
+L A+ + ++E+KE +K K A+ + +D+
Sbjct: 52 SKLKEAR---------DIAMDEMKELAKQKGANAIVGVDV 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,491,893
Number of extensions: 169870
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 17
Length of query: 925
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 831
Effective length of database: 1,116,976
Effective search space: 928207056
Effective search space used: 928207056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)