BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy634
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 70/76 (92%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+P ERWNPTQNVRTILLSVISLLNEPNT SPANVDASVMYR+W++SKG D+EY +IIRKQ
Sbjct: 105 LPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 164
Query: 61 VSGGRIEADKDGVKIP 76
V G +++A++DGVK+P
Sbjct: 165 VLGTKVDAERDGVKVP 180
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 70/76 (92%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+P ERWNPTQNVRTILLSVISLLNEPNT SPANVDASVMYR+W++SKG D+EY +IIRKQ
Sbjct: 108 LPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 167
Query: 61 VSGGRIEADKDGVKIP 76
V G +++A++DGVK+P
Sbjct: 168 VLGTKVDAERDGVKVP 183
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
ERW+P Q+V ILLSV+S+L EPN S ANVDAS M WRD D+E I KQ+
Sbjct: 112 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQI 163
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
ERW+P Q+V ILLSV+S+L EPN S ANVDAS M WRD D+E I KQ+
Sbjct: 109 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQI 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
ERW+P Q+V ILLSV+S+L EPN S ANVDAS M WRD D+E I KQ+
Sbjct: 110 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQI 161
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
ERW+P Q+V ILLSV+S+L EPN S ANVDAS M WRD D+E I KQ+
Sbjct: 106 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQI 157
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
P ERW P V TILLSVIS+L +PN SPANVDA+ M R
Sbjct: 105 PEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQR 144
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 6/58 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
ERW+P Q+V ILLSV+S+L+EPN S AN+DA ++ WRD++ E+E ++ +
Sbjct: 108 ERWSPVQSVEKILLSVMSMLSEPNIESGANIDACIL---WRDNR---PEFERQVKLSI 159
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSK 47
P ERW P V TI++SVIS+L +PN SPANVDA+ + WR+ +
Sbjct: 119 PEERWLPIHTVETIMISVISMLADPNGDSPANVDAA---KEWREDR 161
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
RW PT +V +IL S+ SL N+PN +SPANV+A+ +++
Sbjct: 95 RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFK 131
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVS 62
E+W+ +VRTILLS+ SLL EPN SP N A+ + W++ K + KQV+
Sbjct: 120 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL---WKNPTAFKKYLQETYSKQVT 175
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
RW+PT +V IL S+ SLL+EPN +SPAN A+ +Y+ R +EYE +++ V
Sbjct: 95 RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENR------REYEKRVQQIV 145
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
RW+PT +V IL S+ SLL+EPN +SPAN A+ +Y+ R +EYE +++ V
Sbjct: 98 RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENR------REYEKRVQQIV 148
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
RW+PT +V +IL S+ SLL+EPN +SPAN A+ +Y+
Sbjct: 95 RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQ 131
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMY 40
E W + +VRTILLS+ SLL EPN +SP N A+ M+
Sbjct: 99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 135
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDK-EYENIIRKQV 61
E W P ++ ILL + LL++PN +SPA +A M+++ DK EYE +R Q
Sbjct: 107 EGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKK-------DKVEYEKRVRAQA 158
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN SPA +A +Y + R EYE +R Q
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNR------VEYEKRVRAQA 155
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNR------VEYEKRVRAQA 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN +PA +A +Y + R EYE +R Q
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNR------VEYEKRVRAQA 155
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 155
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 108 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 157
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 155
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 155
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 154
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 104 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 153
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 152
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 154
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 152
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63
E W+P ++++I+ ++ L EPN + P N DA+ + +KE+ +R +SG
Sbjct: 123 EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEG------EKEFAEAVRLTMSG 176
Query: 64 GRIEADK 70
G IE K
Sbjct: 177 GSIEHVK 183
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMY 40
+W+P +V IL S+ SLL +PN +SPAN +A+ MY
Sbjct: 95 QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRR 42
W+P +RT LLS+ +LL++P P + + + MY+
Sbjct: 115 EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKE 152
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P +RT+LLS+ +LL+ PN P D + ++
Sbjct: 98 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 135
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P +RT+LLS+ +LL+ PN P D + ++
Sbjct: 91 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 128
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P +RT+LLS+ +LL+ PN P D + ++
Sbjct: 96 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 133
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P +RT+LLS+ +LL+ PN P D + ++
Sbjct: 95 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 132
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P +RT+LLS+ +LL+ PN P D + ++
Sbjct: 93 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P V +LLS+ SLL +PN P D + +Y+
Sbjct: 93 SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 130
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P V +LLS+ SLL +PN P D + +Y+
Sbjct: 98 QWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSP-ANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
W+P +RT+LLS+ +LL PN + P AN A + + +K +E+ + K+
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P V +LLS+ SLL +PN P D + +Y+
Sbjct: 96 SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYK 133
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P V +LLS+ SLL +PN P D + +Y+
Sbjct: 109 SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 146
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSP-ANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
W+P +RT+LLS+ +LL PN + P AN A + + +K +E+ + K+
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSP-ANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
W+P +RT+LLS+ +LL PN + P AN A + + +K +E+ + K+
Sbjct: 97 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P V +LLS+ SLL +PN P D + +Y+
Sbjct: 97 SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 134
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSP-ANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
W+P +RT+LLS+ +LL PN + P AN A + + +K +E+ + K+
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 150
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
P W P+ N+ T+L S+ L++EPN P D S ++
Sbjct: 96 PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFK 135
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRK 59
++W+P + +LLS+ SLL +PN S P + + + + R K++E+ R+
Sbjct: 94 DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLR------ANKKQFEDTARE 143
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P + +LLS+ SLL +PN P + + +Y+
Sbjct: 111 DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ RD
Sbjct: 99 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRD 140
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRR 42
++W+P +RT+LLS+ +LL+ P P + + +++
Sbjct: 91 DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ RD
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRD 134
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ RD
Sbjct: 90 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRD 131
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRR 42
++W+P +RT+LLS+ +LL+ P P + + +++
Sbjct: 91 DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ RD
Sbjct: 101 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRD 142
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ RD
Sbjct: 91 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRD 132
>pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|B Chain B, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|C Chain C, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|D Chain D, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|E Chain E, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|F Chain F, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
Length = 639
Score = 31.2 bits (69), Expect = 0.20, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 31 PANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE-ADKDGVKIPMTLED 81
P N+DASV R GCD + N+I + G R+ AD DG + L D
Sbjct: 187 PHNIDASVAQTMSRTHVGCDADPTNLI---LGGLRVAMADLDGSMLATELSD 235
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P + +LLS+ SLL +PN P + + +Y+
Sbjct: 91 DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYK 128
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ I+L V LL+ PN +SPA A WR EY+ + Q
Sbjct: 103 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPA------WRSFSRNKAEYDKKVLLQA 152
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P ++ I+L V LL+ PN +SPA A WR EY+ + Q
Sbjct: 105 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPA------WRSFSRNKAEYDKKVLLQA 154
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63
E W P + +I+ + L EPN P N +A+ + + R + +E +++ + G
Sbjct: 114 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR------RLFEQNVQRSMRG 167
Query: 64 GRI 66
G I
Sbjct: 168 GYI 170
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDS 46
W+P +++ L+S+ +LL P + P + + + Y R R+S
Sbjct: 96 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRES 136
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 94 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRK 59
E W P ++ S+I+L+N+P P D + Y +D K K E +K
Sbjct: 92 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYS--KDRKKFCKNAEEFTKK 146
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRK 59
E W P ++ S+I+L+N+P P D + Y +D K K E +K
Sbjct: 94 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYS--KDRKKFCKNAEEFTKK 148
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDS 46
W+P +++ L+S+ +LL P + P + + + Y R R+S
Sbjct: 95 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRES 135
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 95 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 135
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 96 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 137
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 93 SQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 134
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 109 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 150
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 92 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 132
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63
E W P + +I+ + L EPN P N +A+ + + R + +E +++ G
Sbjct: 94 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR------RLFEQNVQRSXRG 147
Query: 64 GRI 66
G I
Sbjct: 148 GYI 150
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVM 39
W+P +RT LLS+ ++L +P + P + + + M
Sbjct: 136 HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKM 171
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P + +LLS+ SLL +PN P + + +Y+
Sbjct: 92 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 109 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 150
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 94 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 135
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
+W+P + +LLS+ SLL +PN P + + +Y+
Sbjct: 91 QWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYK 127
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRD 45
+W+P + +LLS+ SLL +PN P + + +Y+ R+
Sbjct: 101 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDRE 142
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDAS 37
E+WN + +ILL++ +L+ P +P N++A+
Sbjct: 116 EKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 21/89 (23%)
Query: 9 TQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68
T T+ ++ SL+ +PNT +P N+DA D++ R+
Sbjct: 529 TSKTSTVTITGESLITDPNTITPYNIDAP------------DEDNPYAFRRI-------- 568
Query: 69 DKDGVKIPMTLEDYCIKAKTRPADTSMDM 97
KDG ++ + LE+Y A + A T ++
Sbjct: 569 -KDGGQLYLNLENYTYYALRKGASTRSEL 596
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
++W+P + +LLS+ SLL + N P + + +Y+
Sbjct: 92 DQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYK 129
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
E W P ++ + +V LL EP SP +VD + R
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 4 ERWNPTQNVRTILLSVI-SLLNEPNTSSPANVDASVMY-RRWRDSKGCDKEY------EN 55
+ W ++ I S + LL PN P N DA+ MY R + K KEY E
Sbjct: 112 QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171
Query: 56 IIRKQVSG 63
+++Q G
Sbjct: 172 ALKEQEEG 179
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
E W P ++ + +V LL EP + SP +VD + R
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMY 40
+ W+P + +LLS+ SLL + N + P + Y
Sbjct: 93 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 129
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYR 41
E W P ++ + +V LL EP SP +VD + R
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMY 40
+ W+P + +LLS+ SLL + N + P + Y
Sbjct: 138 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,998,523
Number of Sequences: 62578
Number of extensions: 104869
Number of successful extensions: 315
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 97
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)