Query psy634
Match_columns 139
No_of_seqs 179 out of 1150
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:53:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0425|consensus 99.8 1.4E-19 3E-24 140.4 5.7 66 1-72 106-171 (171)
2 KOG0417|consensus 99.7 5.4E-17 1.2E-21 124.6 5.6 58 3-66 90-147 (148)
3 COG5078 Ubiquitin-protein liga 99.6 6.5E-16 1.4E-20 119.4 6.6 58 3-66 95-152 (153)
4 PTZ00390 ubiquitin-conjugating 99.6 3.6E-15 7.8E-20 114.2 6.5 58 3-66 91-148 (152)
5 PLN00172 ubiquitin conjugating 99.5 8.5E-15 1.8E-19 111.4 6.4 58 3-66 90-147 (147)
6 KOG0419|consensus 99.5 8.8E-15 1.9E-19 111.3 6.3 58 3-66 93-150 (152)
7 KOG0426|consensus 99.5 6.5E-14 1.4E-18 106.9 5.3 59 1-65 105-163 (165)
8 KOG0424|consensus 99.4 6E-13 1.3E-17 102.3 6.0 56 5-66 102-157 (158)
9 KOG0418|consensus 99.2 1E-11 2.2E-16 99.0 5.8 61 2-68 95-155 (200)
10 smart00212 UBCc Ubiquitin-conj 99.2 1.9E-11 4.1E-16 91.5 6.9 56 4-65 90-145 (145)
11 PF00179 UQ_con: Ubiquitin-con 99.2 1.7E-11 3.7E-16 91.1 6.2 53 3-61 88-140 (140)
12 cd00195 UBCc Ubiquitin-conjuga 99.2 5.4E-11 1.2E-15 88.6 6.1 51 5-61 91-141 (141)
13 KOG0420|consensus 99.2 3.5E-11 7.6E-16 94.8 5.2 60 2-67 117-176 (184)
14 KOG0422|consensus 99.1 8.5E-11 1.8E-15 90.1 6.4 62 1-68 90-151 (153)
15 KOG0421|consensus 99.1 3.2E-11 7E-16 93.2 3.8 54 3-63 118-171 (175)
16 KOG0416|consensus 99.1 5.6E-11 1.2E-15 93.7 5.0 61 3-69 90-151 (189)
17 KOG0423|consensus 98.8 5.4E-09 1.2E-13 83.1 4.0 64 3-72 99-162 (223)
18 KOG0429|consensus 96.7 0.0031 6.7E-08 52.1 4.9 52 9-66 117-170 (258)
19 KOG0427|consensus 95.6 0.0086 1.9E-07 46.2 2.3 34 3-36 104-138 (161)
20 KOG0894|consensus 88.9 0.4 8.6E-06 39.7 2.9 29 3-31 95-125 (244)
21 KOG0895|consensus 84.3 1.1 2.4E-05 44.1 3.7 24 2-25 948-971 (1101)
22 KOG0897|consensus 76.8 5.7 0.00012 30.0 4.5 43 1-44 53-97 (122)
23 KOG0428|consensus 75.7 1.7 3.6E-05 36.9 1.6 23 3-25 100-122 (314)
24 PF14812 PBP1_TM: Transmembran 53.9 4.3 9.3E-05 28.6 0.0 9 100-108 35-43 (81)
25 KOG0895|consensus 29.0 38 0.00082 33.9 2.1 24 3-26 381-405 (1101)
26 PF05119 Terminase_4: Phage te 22.6 2.5E+02 0.0054 18.8 5.2 54 13-72 2-55 (100)
27 smart00803 TAF TATA box bindin 22.1 1.6E+02 0.0035 19.3 3.6 53 6-72 2-54 (65)
28 PF13950 Epimerase_Csub: UDP-g 21.3 89 0.0019 20.3 2.2 23 5-27 37-60 (62)
29 PF13943 WPP: WPP domain 20.9 1E+02 0.0022 22.4 2.6 24 5-28 4-28 (99)
No 1
>KOG0425|consensus
Probab=99.79 E-value=1.4e-19 Score=140.38 Aligned_cols=66 Identities=50% Similarity=0.830 Sum_probs=62.7
Q ss_pred CCCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCC
Q psy634 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDG 72 (139)
Q Consensus 1 l~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~G 72 (139)
+|++||+|++||++||+||+|||+.||.+||+|++||++||.|+ ++|.++|+++|.++...++|.|
T Consensus 106 ~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~------~EykkkV~r~vr~s~e~~~r~~ 171 (171)
T KOG0425|consen 106 LPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENP------EEYKKKVRRCVRRSQEEAEREG 171 (171)
T ss_pred ChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCH------HHHHHHHHHHHHHHHHhhhccC
Confidence 58899999999999999999999999999999999999999997 9999999999999998887765
No 2
>KOG0417|consensus
Probab=99.67 E-value=5.4e-17 Score=124.63 Aligned_cols=58 Identities=29% Similarity=0.559 Sum_probs=56.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+.+|+|++||++||+||++||.+||+++||++++|.+|+.|+ .+|.++||+||++||+
T Consensus 90 k~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~------~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 90 KDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDR------AKYERTAREWTRKYAM 147 (148)
T ss_pred hccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhH------HHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999997 9999999999999986
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.5e-16 Score=119.39 Aligned_cols=58 Identities=41% Similarity=0.646 Sum_probs=55.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+++|+|+++|++||+|||+||.+||+.+|||++||.+|++++ ++|.++||.|+++++.
T Consensus 95 ~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~------~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 95 KDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDK------EEYEKKVREWVKKYAE 152 (153)
T ss_pred hCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCH------HHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999997 9999999999999875
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.58 E-value=3.6e-15 Score=114.22 Aligned_cols=58 Identities=24% Similarity=0.489 Sum_probs=56.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+++|+|++||++||++|++||.+||+++|+|.+||.+|++++ +.|.++||.|+++||.
T Consensus 91 ~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~------~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 91 KDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNR------ADAEKVAREWNQKYAK 148 (152)
T ss_pred cccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCH------HHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999997 9999999999999987
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.55 E-value=8.5e-15 Score=111.41 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=55.3
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
++.|+|+++|++||++|++||.+||+++|+|.+||.+|++++ .+|.++||+|+++||.
T Consensus 90 ~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~------~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 90 RDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENR------SRYEATAREWTQRYAT 147 (147)
T ss_pred cCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCH------HHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999999999997 9999999999998873
No 6
>KOG0419|consensus
Probab=99.55 E-value=8.8e-15 Score=111.26 Aligned_cols=58 Identities=40% Similarity=0.696 Sum_probs=54.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+.+|+|+++|..||+|||+||++||+.||+|.+||++|++++ .+|.+.||.-+.++..
T Consensus 93 qNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~------rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 93 QNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENK------REYERRVKETVEQSWS 150 (152)
T ss_pred hcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhCh------HHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999999997 9999999998876643
No 7
>KOG0426|consensus
Probab=99.46 E-value=6.5e-14 Score=106.88 Aligned_cols=59 Identities=49% Similarity=0.766 Sum_probs=55.5
Q ss_pred CCCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 1 l~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
|..+||+|.|+|.+||+||.|||.+||-+|++|++|+.|+|.+| ++|.++||..++++-
T Consensus 105 ls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R------~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 105 LSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDR------EEFEKIAKRLVRKTL 163 (165)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhH------HHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999998 999999999998753
No 8
>KOG0424|consensus
Probab=99.39 E-value=6e-13 Score=102.32 Aligned_cols=56 Identities=36% Similarity=0.621 Sum_probs=54.0
Q ss_pred CCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 5 ~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.|+|++||++||++||.||+.||+.+|+|.+|..+|+++| .+|++.||.++++|+.
T Consensus 102 ~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r------~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 102 DWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDR------AEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCH------HHHHHHHHHHHHHhcc
Confidence 3999999999999999999999999999999999999997 9999999999999875
No 9
>KOG0418|consensus
Probab=99.25 E-value=1e-11 Score=98.95 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=58.1
Q ss_pred CCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 2 ~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
.+..|+|+||||++|+|||+||..|+|.+|....+|.+|.+|+ +.|.++||.|+..||...
T Consensus 95 lkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~------~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 95 LKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNY------EMFYKTARYWTTEFAGGR 155 (200)
T ss_pred hhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhH------HHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999999999997 999999999999999874
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.25 E-value=1.9e-11 Score=91.47 Aligned_cols=56 Identities=39% Similarity=0.717 Sum_probs=53.5
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
++|+|+++|.+||++|++||.+|++.+|+|.+||.+|++++ +.|.++||.++.+++
T Consensus 90 ~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~------~~f~~~~~~~~~k~~ 145 (145)
T smart00212 90 EKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNR------EEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999997 999999999999863
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.24 E-value=1.7e-11 Score=91.08 Aligned_cols=53 Identities=40% Similarity=0.698 Sum_probs=48.8
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHH
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v 61 (139)
.++|+|+++|.+||++|++||.+|++.+|+|.+||.+|++++ +.|.++||+|.
T Consensus 88 ~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~------~~f~~~~~~~~ 140 (140)
T PF00179_consen 88 PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDR------EEFEKKAREWA 140 (140)
T ss_dssp TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCH------HHHHHHHHHH-
T ss_pred cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCH------HHHHHHHHHcC
Confidence 456999999999999999999999999999999999999997 99999999984
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.17 E-value=5.4e-11 Score=88.59 Aligned_cols=51 Identities=43% Similarity=0.764 Sum_probs=48.9
Q ss_pred CCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHH
Q psy634 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61 (139)
Q Consensus 5 ~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v 61 (139)
.|+|+++|.+||++|++||.+|++.+|+|.+||.+|++++ ..|.++||.|+
T Consensus 91 ~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~------~~f~~~~~~~~ 141 (141)
T cd00195 91 GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENR------EEFKKKAREWT 141 (141)
T ss_pred CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH------HHHHHHHHHhC
Confidence 4999999999999999999999999999999999999987 99999999875
No 13
>KOG0420|consensus
Probab=99.17 E-value=3.5e-11 Score=94.81 Aligned_cols=60 Identities=32% Similarity=0.597 Sum_probs=55.6
Q ss_pred CCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 2 ~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++.|+|++||.+|+.++++||.+||+++|||.+||.++++++ +.|...||..+.++...
T Consensus 117 LRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~------e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 117 LREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR------EGFENNVRRAMSGGCVG 176 (184)
T ss_pred HHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH------HHHHHHHHHHHhcCccC
Confidence 3578999999999999999999999999999999999999997 99999999988877653
No 14
>KOG0422|consensus
Probab=99.15 E-value=8.5e-11 Score=90.15 Aligned_cols=62 Identities=19% Similarity=0.408 Sum_probs=58.3
Q ss_pred CCCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 1 l~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
+..++|.|+.++.+||+++++|+++|++..|++.++|..|++++ ..|.++|..||++|+...
T Consensus 90 is~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~------~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 90 ISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDP------KKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred eecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCH------HHHHHhHHHHHHHhcCcC
Confidence 35689999999999999999999999999999999999999997 999999999999997754
No 15
>KOG0421|consensus
Probab=99.14 E-value=3.2e-11 Score=93.21 Aligned_cols=54 Identities=39% Similarity=0.643 Sum_probs=48.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~ 63 (139)
++.|+..++||+||+||||||.+||..||||..||.++. ++ ++|++.+.+..++
T Consensus 118 kdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~------~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 118 KDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQ------EEYKKYLEALYKE 171 (175)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CH------HHHHHHHHHHhhc
Confidence 578999999999999999999999999999999999987 53 8999888765543
No 16
>KOG0416|consensus
Probab=99.13 E-value=5.6e-11 Score=93.71 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=56.9
Q ss_pred CCCCcccccHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccC
Q psy634 3 CERWNPTQNVRTILLS-VISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEAD 69 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlS-I~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae 69 (139)
++.|+|.+.+..|+.+ +.+||..||+.+|||.+||.+|.++| ++|+++||.++++||+++.
T Consensus 90 NQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~------~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 90 NQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDP------EEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred hhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCH------HHHHHHHHHHHHHhcChhh
Confidence 3579999999999997 68999999999999999999999997 9999999999999999763
No 17
>KOG0423|consensus
Probab=98.78 E-value=5.4e-09 Score=83.13 Aligned_cols=64 Identities=30% Similarity=0.352 Sum_probs=58.4
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCC
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDG 72 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~G 72 (139)
+..|+|.+.||.||+.|..||..|||+|.||.+|+.|+..|. .+|.+.||.++.-++....+.|
T Consensus 99 KkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnY------deYa~rARl~TeIHa~p~~~~~ 162 (223)
T KOG0423|consen 99 KKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENY------DEYARRARLYTEIHAKPKPKFK 162 (223)
T ss_pred hcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhH------HHHHHHHHHHHHhhcCCCCCcc
Confidence 467999999999999999999999999999999999999997 9999999999998888754433
No 18
>KOG0429|consensus
Probab=96.66 E-value=0.0031 Score=52.13 Aligned_cols=52 Identities=21% Similarity=0.483 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHhhcCCCCCCC-C-cHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 9 TQNVRTILLSVISLLNEPNTSSP-A-NVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 9 t~~V~~ILlSI~sLL~ePN~~sP-l-N~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
-..|..||.-+|.++.+|....+ + |.+||+||+++| .+|.++|+.+++.+..
T Consensus 117 ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r------~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 117 EHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHR------DEFRERVQECVKASRS 170 (258)
T ss_pred ccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhH------HHHHHHHHHHHHHHHH
Confidence 35789999999999999999888 5 999999999998 9999999999987654
No 19
>KOG0427|consensus
Probab=95.58 E-value=0.0086 Score=46.17 Aligned_cols=34 Identities=26% Similarity=0.678 Sum_probs=27.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcCC-CCCCCCcHHH
Q psy634 3 CERWNPTQNVRTILLSVISLLNEP-NTSSPANVDA 36 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~eP-N~~sPlN~dA 36 (139)
.+.|+|+|+|.+|.+||+|||+.- .-..|...+.
T Consensus 104 ~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~~ 138 (161)
T KOG0427|consen 104 YDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDNDR 138 (161)
T ss_pred cccCCcchhhHHHHHHHHHHHccCccccCCCccch
Confidence 468999999999999999999874 4456655543
No 20
>KOG0894|consensus
Probab=88.87 E-value=0.4 Score=39.72 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=23.8
Q ss_pred CCCCcccccHHHHHHHHHHhhcC--CCCCCC
Q psy634 3 CERWNPTQNVRTILLSVISLLNE--PNTSSP 31 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~e--PN~~sP 31 (139)
.+.|||.++|++||.++.|++.+ |.+.|-
T Consensus 95 PdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 95 PDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred cCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 36799999999999999999987 444443
No 21
>KOG0895|consensus
Probab=84.26 E-value=1.1 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.4
Q ss_pred CCCCCcccccHHHHHHHHHHhhcC
Q psy634 2 PCERWNPTQNVRTILLSVISLLNE 25 (139)
Q Consensus 2 ~~e~WsPt~~V~~ILlSI~sLL~e 25 (139)
+.+-|+|+-+|.+||+|||+|+.+
T Consensus 948 ~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 948 GNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred CccccCcchhHHHHHHHhhhhhcc
Confidence 467899999999999999998765
No 22
>KOG0897|consensus
Probab=76.80 E-value=5.7 Score=29.96 Aligned_cols=43 Identities=14% Similarity=0.383 Sum_probs=33.5
Q ss_pred CCCCCCcccccHHHHHHHHHHhhcCC--CCCCCCcHHHHHHHHhcc
Q psy634 1 MPCERWNPTQNVRTILLSVISLLNEP--NTSSPANVDASVMYRRWR 44 (139)
Q Consensus 1 l~~e~WsPt~~V~~ILlSI~sLL~eP--N~~sPlN~dAA~~yr~nr 44 (139)
|..++|+.+++|+.+++.|...|..- -..+|++.... +|.+.+
T Consensus 53 lt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~~s~~q 97 (122)
T KOG0897|consen 53 LTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-LYSHSQ 97 (122)
T ss_pred HccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-HhhHHH
Confidence 45689999999999999999988875 45688876654 666543
No 23
>KOG0428|consensus
Probab=75.73 E-value=1.7 Score=36.89 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=20.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcC
Q psy634 3 CERWNPTQNVRTILLSVISLLNE 25 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~e 25 (139)
.+.|.|+++||+.|++|+.+|-.
T Consensus 100 PEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 100 PETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ccccCcchhHHHHHHHHHccccC
Confidence 37899999999999999988754
No 24
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=53.90 E-value=4.3 Score=28.63 Aligned_cols=9 Identities=33% Similarity=0.150 Sum_probs=0.0
Q ss_pred cccCCCCCC
Q psy634 100 FYVDDYDLD 108 (139)
Q Consensus 100 ~~~~~~~~~ 108 (139)
+++++++++
T Consensus 35 ~ddd~~DDD 43 (81)
T PF14812_consen 35 YDDDYEDDD 43 (81)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 343444333
No 25
>KOG0895|consensus
Probab=29.01 E-value=38 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.3
Q ss_pred CCCCccc-ccHHHHHHHHHHhhcCC
Q psy634 3 CERWNPT-QNVRTILLSVISLLNEP 26 (139)
Q Consensus 3 ~e~WsPt-~~V~~ILlSI~sLL~eP 26 (139)
.+.|+|. .+|.++|.+||.|..+=
T Consensus 381 ~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 381 REKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ccCCCccccchhhhhhhhhhhhccc
Confidence 4789999 99999999999998763
No 26
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=22.62 E-value=2.5e+02 Score=18.84 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCC
Q psy634 13 RTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDG 72 (139)
Q Consensus 13 ~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~G 72 (139)
+.+..-|...|..-+..+|+...+-..|-... ..|.+..+...+.........|
T Consensus 2 k~~w~~i~~~L~~~~~l~~~D~~~l~~yc~~~------~~~~~~~~~l~~~G~~~~~~~G 55 (100)
T PF05119_consen 2 KKEWKRIVPELKELGILSNLDVPLLERYCEAY------SRYREAEKELKKEGFVVETKNG 55 (100)
T ss_pred hHHHHHHHHHHHHcCCCcHhHHHHHHHHHHHH------HHHHHHHHHHHHcCceeeCCCC
Confidence 35667788888888889999999999998875 7777777666664444333456
No 27
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=22.07 E-value=1.6e+02 Score=19.30 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCC
Q psy634 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDG 72 (139)
Q Consensus 6 WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~G 72 (139)
|.|.-+|+.|..++ --..++.+++..+...- +.|.+.+-+.+.+++..+.|..
T Consensus 2 ~~p~~~i~ria~~~--------Gi~ris~~a~~~l~~~~------e~rl~~i~~~A~k~~~hakRkt 54 (65)
T smart00803 2 WLPKETIKDVAESL--------GIGNLSDEAAKLLAEDV------EYRIKEIVQEALKFMRHSKRTT 54 (65)
T ss_pred CCCHHHHHHHHHHC--------CCccccHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhCCCe
Confidence 66777777777654 23467888888887763 6677777777777777776543
No 28
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=21.26 E-value=89 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=13.5
Q ss_pred CCcccccHHHHHHHHHH-hhcCCC
Q psy634 5 RWNPTQNVRTILLSVIS-LLNEPN 27 (139)
Q Consensus 5 ~WsPt~~V~~ILlSI~s-LL~ePN 27 (139)
.|.|.++|.++|.+... ...+|+
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcC
Confidence 69999999999997544 334454
No 29
>PF13943 WPP: WPP domain
Probab=20.90 E-value=1e+02 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=16.6
Q ss_pred CCcccccHHHHHHH-HHHhhcCCCC
Q psy634 5 RWNPTQNVRTILLS-VISLLNEPNT 28 (139)
Q Consensus 5 ~WsPt~~V~~ILlS-I~sLL~ePN~ 28 (139)
-|.|+|+-|..+.. +..=|..|-.
T Consensus 4 lWPpsq~tR~~vv~Rm~~nLss~s~ 28 (99)
T PF13943_consen 4 LWPPSQRTRDAVVERMTENLSSPSI 28 (99)
T ss_pred cCCCCchHHHHHHHHHHHhhhhhHH
Confidence 49999999887764 5555555543
Done!