Query psy634
Match_columns 139
No_of_seqs 179 out of 1150
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:54:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rz3_A Ubiquitin-conjugating e 99.7 7.8E-19 2.7E-23 136.3 4.1 74 3-76 110-183 (183)
2 4gpr_A Ubiquitin-conjugating e 99.6 7E-16 2.4E-20 116.0 6.5 58 3-66 93-150 (151)
3 1yh2_A HSPC150 protein similar 99.6 9.4E-16 3.2E-20 117.4 7.0 61 3-69 97-157 (169)
4 1fxt_A Ubiquitin-conjugating e 99.6 1.1E-15 3.8E-20 114.5 6.1 57 4-66 93-149 (149)
5 1ayz_A UBC2, ubiquitin-conjuga 99.6 1.2E-15 4E-20 117.3 6.3 59 3-67 93-151 (169)
6 3h8k_A Ubiquitin-conjugating e 99.6 1.5E-15 5.3E-20 115.2 6.8 58 3-66 106-163 (164)
7 2c2v_B Ubiquitin-conjugating e 99.6 1.1E-15 3.7E-20 115.4 5.8 58 4-67 95-152 (154)
8 2ucz_A UBC7, ubiquitin conjuga 99.6 1.1E-15 3.7E-20 116.3 5.9 58 3-66 107-164 (165)
9 3fn1_B NEDD8-conjugating enzym 99.6 2E-15 6.8E-20 115.0 7.0 58 3-66 109-167 (167)
10 1z2u_A Ubiquitin-conjugating e 99.6 1.6E-15 5.6E-20 113.7 6.3 58 3-66 93-150 (150)
11 2r0j_A Ubiquitin carrier prote 99.6 1.2E-15 4.3E-20 114.4 5.6 59 3-67 90-148 (149)
12 2bep_A Ubiquitin-conjugating e 99.6 1.7E-15 5.8E-20 114.7 6.3 58 3-66 101-158 (159)
13 2aak_A UBC1, ubiquitin conjuga 99.6 2E-15 6.9E-20 113.4 6.7 59 3-67 93-151 (152)
14 2ayv_A Ubiquitin-conjugating e 99.6 2E-15 6.7E-20 115.7 6.3 57 3-65 110-166 (166)
15 2c4o_A Ubiquitin-conjugating e 99.6 2.4E-15 8.2E-20 115.0 6.6 58 3-66 108-165 (165)
16 1wzv_A Ubiquitin-conjugating e 99.6 2.6E-15 9E-20 113.1 6.5 59 3-67 94-152 (155)
17 2f4z_A Tgtwinscan_2721 - E2 do 99.6 2.3E-15 7.8E-20 118.2 6.3 58 3-66 135-192 (193)
18 3k9o_A Ubiquitin-conjugating e 99.6 2.2E-15 7.5E-20 118.1 6.1 60 3-68 98-157 (201)
19 2gjd_A Ubiquitin-conjugating e 99.6 4.3E-15 1.5E-19 112.5 7.3 56 5-66 102-157 (157)
20 1zdn_A Ubiquitin-conjugating e 99.6 2.3E-15 7.8E-20 114.1 5.7 57 3-65 102-158 (158)
21 1jat_A Ubiquitin-conjugating e 99.6 1.4E-15 4.8E-20 114.8 4.4 60 3-68 94-153 (155)
22 1c4z_D UBCH7, ubiquitin conjug 99.6 2.3E-15 7.8E-20 113.4 5.5 60 3-68 92-151 (154)
23 3rcz_B SUMO-conjugating enzyme 99.6 4.7E-15 1.6E-19 113.3 7.1 57 4-66 107-163 (163)
24 1tte_A Ubiquitin-conjugating e 99.6 6.9E-15 2.4E-19 117.2 7.9 61 2-68 92-152 (215)
25 2y9m_A Ubiquitin-conjugating e 99.6 3.9E-15 1.3E-19 114.4 6.0 60 4-69 111-171 (172)
26 2grr_A Ubiquitin-conjugating e 99.5 7.1E-15 2.4E-19 111.6 6.9 57 4-66 104-160 (161)
27 3e46_A Ubiquitin-conjugating e 99.5 1E-14 3.5E-19 118.8 7.2 59 3-67 150-208 (253)
28 3bzh_A Ubiquitin-conjugating e 99.5 8.8E-15 3E-19 114.9 6.3 58 3-66 137-194 (194)
29 2e2c_A Ubiquitin conjugating e 99.5 7.6E-15 2.6E-19 110.8 5.6 58 3-67 98-155 (156)
30 2pwq_A Ubiquitin conjugating e 99.5 1.3E-14 4.3E-19 115.8 6.5 60 4-69 114-173 (216)
31 2onu_A Ubiquitin-conjugating e 99.5 2.7E-14 9.1E-19 107.8 6.0 59 4-68 90-149 (152)
32 3o2u_A NEDD8-conjugating enzym 99.5 4E-14 1.4E-18 110.6 6.2 59 3-67 122-180 (190)
33 2z5d_A Ubiquitin-conjugating e 99.5 3.6E-14 1.2E-18 110.3 4.8 58 4-67 112-170 (179)
34 1y8x_A Ubiquitin-conjugating e 99.5 8E-14 2.7E-18 106.0 6.3 58 3-66 93-150 (160)
35 4ddg_A Ubiquitin-conjugating e 99.4 8.4E-14 2.9E-18 118.9 6.6 60 3-68 92-151 (399)
36 1i7k_A Ubiquitin-conjugating e 99.4 8.4E-14 2.9E-18 108.1 6.0 59 3-68 119-177 (179)
37 1yf9_A Ubiquitin carrier prote 99.4 8.2E-14 2.8E-18 107.2 5.3 58 4-67 99-157 (171)
38 2nvu_C NEDD8-conjugating enzym 99.4 1.7E-13 5.7E-18 106.2 6.5 58 3-66 113-170 (180)
39 2awf_A Ubiquitin-conjugating e 99.4 7.6E-14 2.6E-18 107.3 3.3 52 3-60 120-172 (172)
40 1yrv_A Ubiquitin-conjugating l 99.4 3.9E-13 1.3E-17 103.3 5.8 53 4-63 116-168 (169)
41 3ceg_A Baculoviral IAP repeat- 99.0 5.3E-11 1.8E-15 100.1 2.8 59 3-67 181-244 (323)
42 4ds2_A Ubiquitin-conjugating e 99.0 8.1E-10 2.8E-14 84.1 6.0 50 3-58 111-163 (167)
43 1zuo_A Hypothetical protein LO 98.0 4E-07 1.4E-11 70.7 -1.9 49 3-65 133-181 (186)
44 2f4w_A Ubiquitin-conjugating e 97.9 7.7E-06 2.6E-10 63.4 4.2 71 3-87 104-174 (187)
45 2cwb_A Chimera of immunoglobul 74.4 0.63 2.2E-05 33.2 0.0 35 27-67 22-56 (108)
46 3q5w_A Protein CUT8; proteasom 36.5 45 0.0015 26.8 4.6 61 1-73 146-206 (245)
47 2byk_A Chrac-16; nucleosome sl 22.1 1.4E+02 0.0047 21.6 4.8 29 31-65 37-65 (140)
No 1
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.74 E-value=7.8e-19 Score=136.28 Aligned_cols=74 Identities=77% Similarity=1.239 Sum_probs=67.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCCcccC
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDGVKIP 76 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~Gv~vp 76 (139)
.++|+|+++|++||++|++||.+||+.+|+|.+||.+|+++++.++++++|.++||++|++++..++++|++||
T Consensus 110 ~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~~~~~~g~~vp 183 (183)
T 3rz3_A 110 SERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDGVKVP 183 (183)
T ss_dssp -CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred cCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 48899999999999999999999999999999999999996655555689999999999999999999999997
No 2
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.61 E-value=7e-16 Score=115.98 Aligned_cols=58 Identities=28% Similarity=0.503 Sum_probs=56.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.+.|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 93 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~------~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 93 KDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANK------KQFEDTAREWTRMYAR 150 (151)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCH------HHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999997 9999999999999986
No 3
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.61 E-value=9.4e-16 Score=117.44 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=57.4
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccC
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEAD 69 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae 69 (139)
.++|+|+++|.+||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+...
T Consensus 97 ~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~------~~y~~~~r~~~~~~a~~~~ 157 (169)
T 1yh2_A 97 KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNK------PAFLKNARQWTEKHARQKQ 157 (169)
T ss_dssp TSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHSCCC-
T ss_pred ccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhH------HHHHHHHHHHHHHHccccc
Confidence 388999999999999999999999999999999999999997 9999999999999998643
No 4
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.59 E-value=1.1e-15 Score=114.50 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=54.9
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 93 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~------~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 93 NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDR------ESFNKTAALWTRLYAS 149 (149)
T ss_dssp TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCS------SHHHHHHHHHHHHHCC
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhcC
Confidence 67999999999999999999999999999999999999997 8999999999999974
No 5
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.59 E-value=1.2e-15 Score=117.26 Aligned_cols=59 Identities=36% Similarity=0.692 Sum_probs=56.1
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
+++|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||..
T Consensus 93 ~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~------~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 93 QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHK------SQYVKRVKETVEKSWED 151 (169)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCH------HHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999999997 99999999999999863
No 6
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.59 E-value=1.5e-15 Score=115.19 Aligned_cols=58 Identities=48% Similarity=0.698 Sum_probs=55.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|++||++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++++.
T Consensus 106 ~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~------~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 106 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR------EQFYKIAKQIVQKSLG 163 (164)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHhhc
Confidence 478999999999999999999999999999999999999997 9999999999998864
No 7
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.59 E-value=1.1e-15 Score=115.42 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=53.9
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||..
T Consensus 95 ~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~------~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 95 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE------AQAIETARAWTRLYAMN 152 (154)
T ss_dssp TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHH------HHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999997 99999999999999874
No 8
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.59 E-value=1.1e-15 Score=116.27 Aligned_cols=58 Identities=43% Similarity=0.692 Sum_probs=55.5
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++++.
T Consensus 107 ~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~------~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 107 EERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNR------PEFERQVKLSILKSLG 164 (165)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTH------HHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH------HHHHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999999999997 9999999999999864
No 9
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.58 E-value=2e-15 Score=115.01 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=55.1
Q ss_pred CCCCcccccHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNE-PNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~e-PN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.+.|+|+++|++||++|++||.+ ||+++|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 109 ~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~------~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 109 GTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDK------EDFRNKVDDYIKRYAR 167 (167)
T ss_dssp TTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHCC
T ss_pred CCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCH------HHHHHHHHHHHHHhcC
Confidence 45899999999999999999999 7999999999999999997 9999999999999984
No 10
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.58 E-value=1.6e-15 Score=113.71 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=55.5
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 93 ~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~------~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 93 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR------ERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH------HHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999997 9999999999999974
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.58 E-value=1.2e-15 Score=114.38 Aligned_cols=59 Identities=22% Similarity=0.460 Sum_probs=56.3
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
+++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+.
T Consensus 90 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 90 KDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDK------NDAEHVARQWNKIYANN 148 (149)
T ss_dssp TTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCH------HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH------HHHHHHHHHHHHHHccC
Confidence 478999999999999999999999999999999999999987 99999999999999874
No 12
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.58 E-value=1.7e-15 Score=114.72 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=55.6
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||.
T Consensus 101 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 101 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP------EMFKQTARLWAHVYAG 158 (159)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHSC
T ss_pred hccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhhc
Confidence 467999999999999999999999999999999999999997 9999999999999985
No 13
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.58 E-value=2e-15 Score=113.43 Aligned_cols=59 Identities=37% Similarity=0.628 Sum_probs=55.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||..
T Consensus 93 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 93 QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESK------REYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHCC-
T ss_pred cCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCH------HHHHHHHHHHHHHHccc
Confidence 468999999999999999999999999999999999999997 99999999999999864
No 14
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.58 E-value=2e-15 Score=115.73 Aligned_cols=57 Identities=26% Similarity=0.519 Sum_probs=54.8
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
+++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||
T Consensus 110 ~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~------~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 110 KDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDR------MRYDQTAREWSQKYA 166 (166)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHC
T ss_pred cccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCH------HHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999997 999999999999986
No 15
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.57 E-value=2.4e-15 Score=115.01 Aligned_cols=58 Identities=28% Similarity=0.542 Sum_probs=55.5
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 108 ~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~------~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 108 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR------EKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCH------HHHHHHHHHHHHHTTC
T ss_pred cCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHH------HHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999997 9999999999999984
No 16
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.57 E-value=2.6e-15 Score=113.12 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||.||++||..
T Consensus 94 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 94 SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNP------ELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHCEE
T ss_pred ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999997 99999999999999985
No 17
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.57 E-value=2.3e-15 Score=118.20 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=55.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||.
T Consensus 135 ~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~------~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 135 KHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENH------PLFVQTAKLWTETFAK 192 (193)
T ss_dssp TTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHCC
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHHcc
Confidence 467999999999999999999999999999999999999997 9999999999999986
No 18
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.57 E-value=2.2e-15 Score=118.06 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=57.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
+++|+|++||++||++|++||.+||+++|+|.+||.+|++++ +.|.++||+||++||...
T Consensus 98 ~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~------~~f~~~a~~~~~~~a~~~ 157 (201)
T 3k9o_A 98 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP------EMFKQTARLWAHVYAGAP 157 (201)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHHCCC
T ss_pred ccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999999997 999999999999999853
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.57 E-value=4.3e-15 Score=112.45 Aligned_cols=56 Identities=30% Similarity=0.489 Sum_probs=54.4
Q ss_pred CCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 5 RWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 5 ~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
+|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 102 ~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 102 DWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNK------AEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCH------HHHHHHHHHHHHHTBC
T ss_pred CCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999997 9999999999999985
No 20
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.57 E-value=2.3e-15 Score=114.06 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=54.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||.||++||
T Consensus 102 ~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~------~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 102 KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENY------EEYAARARLLTEIHG 158 (158)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCH------HHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999997 999999999999986
No 21
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.56 E-value=1.4e-15 Score=114.76 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=57.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
+++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+||++||...
T Consensus 94 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 94 KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNE------QGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCH------HHHHHHHHHHHHHHSEEC
T ss_pred ccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhcccC
Confidence 478999999999999999999999999999999999999987 999999999999999753
No 22
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.56 E-value=2.3e-15 Score=113.36 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=54.2
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
.++|+|+++|.+||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||...
T Consensus 92 ~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 92 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDR------KKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCS------STTHHHHHHHHTTC----
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhH------HHHHHHHHHHHHHhcccC
Confidence 478999999999999999999999999999999999999997 899999999999999753
No 23
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.56 E-value=4.7e-15 Score=113.30 Aligned_cols=57 Identities=35% Similarity=0.676 Sum_probs=54.5
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
++|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||.
T Consensus 107 ~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~------~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 107 EGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDK------VEYEKRVRAQARENAP 163 (163)
T ss_dssp TTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHTCC
T ss_pred CCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHhCc
Confidence 46999999999999999999999999999999999999997 9999999999999973
No 24
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.55 E-value=6.9e-15 Score=117.23 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=57.8
Q ss_pred CCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 2 ~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
.+++|+|++||++||++|++||.+||+.+|+|.+||.+|++++ +.|.++||.||++||...
T Consensus 92 L~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~------~~f~~~ar~~t~~yA~~~ 152 (215)
T 1tte_A 92 LRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDR------ESFNKTAALWTRLYASET 152 (215)
T ss_dssp TTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCH------HHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHhccCC
Confidence 3578999999999999999999999999999999999999997 999999999999999864
No 25
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.55 E-value=3.9e-15 Score=114.42 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=55.4
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHh-ccCCCCChHHHHHHHHHHHhccccccC
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRR-WRDSKGCDKEYENIIRKQVSGGRIEAD 69 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~-nr~~~~~~~~y~~~ar~~v~~~a~~ae 69 (139)
+.|+|+++|++||++|++||.+||+++|+|.+||.+|++ ++ ++|.++||+||++++..|+
T Consensus 111 ~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~------~~f~~~~~~~~~~~~~~~~ 171 (172)
T 2y9m_A 111 EEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDM------SAYQGIVKYFLAERERINN 171 (172)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCH------HHHHHHHHHHHHHHHC---
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCH------HHHHHHHHHHHHHHHhhhc
Confidence 789999999999999999999999999999999999999 76 9999999999999988764
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.55 E-value=7.1e-15 Score=111.62 Aligned_cols=57 Identities=39% Similarity=0.630 Sum_probs=55.0
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
++|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||.
T Consensus 104 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 104 KDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNR------VEYEKRVRAQAKKFAP 160 (161)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHTCC
T ss_pred CCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999997 9999999999999985
No 27
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=99.53 E-value=1e-14 Score=118.82 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ +.|.++||+||++||..
T Consensus 150 ~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~------~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 150 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP------EMFKQTARLWAHVYAGA 208 (253)
T ss_dssp TTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCH------HHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999999997 99999999999999985
No 28
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.53 E-value=8.8e-15 Score=114.86 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=55.5
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|+++|.+||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+||++||+
T Consensus 137 ~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~------~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 137 KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR------AEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHCC
T ss_pred hccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCH------HHHHHHHHHHHHHhhC
Confidence 468999999999999999999999999999999999999997 9999999999999974
No 29
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.53 E-value=7.6e-15 Score=110.82 Aligned_cols=58 Identities=38% Similarity=0.653 Sum_probs=54.3
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+| +++ ++|.++||+||++|+.+
T Consensus 98 ~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~------~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 98 KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQ------TEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCH------HHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCH------HHHHHHHHHHHHHhccC
Confidence 46899999999999999999999999999999999999 776 99999999999998753
No 30
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=99.52 E-value=1.3e-14 Score=115.80 Aligned_cols=60 Identities=22% Similarity=0.434 Sum_probs=56.5
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccC
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEAD 69 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae 69 (139)
++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ +.|.++||.||++||....
T Consensus 114 ~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~------~~f~~~ar~~t~~ya~~~~ 173 (216)
T 2pwq_A 114 NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENH------ALFVKTASVWTKTFATGPK 173 (216)
T ss_dssp HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHSCCC-
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhcCCCc
Confidence 46999999999999999999999999999999999999997 9999999999999998653
No 31
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.49 E-value=2.7e-14 Score=107.79 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=55.4
Q ss_pred CCCcccccHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 4 ERWNPTQNVRTILLS-VISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 4 e~WsPt~~V~~ILlS-I~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
++|+|+++|++||++ |++||.+||+++|+|.+||.+|++++ ++|.++||+||++||+..
T Consensus 90 ~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~------~~y~~~v~~~~~~~a~~~ 149 (152)
T 2onu_A 90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDK------NIYEEKVKEYVKLYASKD 149 (152)
T ss_dssp HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHSCGG
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHhccCc
Confidence 469999999999999 68999999999999999999999997 999999999999999753
No 32
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.48 E-value=4e-14 Score=110.62 Aligned_cols=59 Identities=34% Similarity=0.630 Sum_probs=55.1
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++||+|++++...
T Consensus 122 ~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~------~~f~~~ar~~~~~~~~~ 180 (190)
T 3o2u_A 122 REDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGE------KEFAEAVRLTMSGGSIE 180 (190)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCH------HHHHHHHHHHHBTCEET
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCH------HHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999999999997 99999999999876543
No 33
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=110.33 Aligned_cols=58 Identities=29% Similarity=0.462 Sum_probs=55.7
Q ss_pred CCCcccccHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 4 ERWNPTQNVRTILLS-VISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 4 e~WsPt~~V~~ILlS-I~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
++|+|+++|++||++ |++||.+||+++|+|.+||.+|++++ ++|.++||+||++||..
T Consensus 112 ~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~------~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 112 QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRP------EEYKQKIKEYIQKYATE 170 (179)
T ss_dssp HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCH------HHHHHHHHHHHHHHSSH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHHHHccc
Confidence 569999999999999 99999999999999999999999997 99999999999999985
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.45 E-value=8e-14 Score=105.96 Aligned_cols=58 Identities=28% Similarity=0.573 Sum_probs=54.5
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
++.|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ ++|.++||+|+++...
T Consensus 93 ~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~------~~f~~~v~~~v~~~~~ 150 (160)
T 1y8x_A 93 REDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR------RLFEQNVQRSMRGGYI 150 (160)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCH------HHHHHHHHHHHHSEEE
T ss_pred hhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHhhCcc
Confidence 478999999999999999999999999999999999999987 9999999999997653
No 35
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.45 E-value=8.4e-14 Score=118.89 Aligned_cols=60 Identities=27% Similarity=0.522 Sum_probs=57.1
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
+++|+|++||++||++|++||.+||+++|+|.+||.+|++++ +.|.++||.||++||...
T Consensus 92 ~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~------~~y~~~~~~~~~~~a~~~ 151 (399)
T 4ddg_A 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR------EKYNRIAREWTQKYAMGG 151 (399)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCH------HHHHHHHHHHHHHHTSCT
T ss_pred ccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCH------HHHHHHHHHHHHHhhccc
Confidence 478999999999999999999999999999999999999997 999999999999998863
No 36
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.44 E-value=8.4e-14 Score=108.07 Aligned_cols=59 Identities=34% Similarity=0.552 Sum_probs=54.4
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEA 68 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~a 68 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+| +++ ++|.++||+++++++...
T Consensus 119 ~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~------~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 119 KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNP------TAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSH------HHHHHHHHHHHHTTCC--
T ss_pred cCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCH------HHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999 886 999999999999987653
No 37
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.44 E-value=8.2e-14 Score=107.23 Aligned_cols=58 Identities=28% Similarity=0.465 Sum_probs=55.2
Q ss_pred CCCcccccHHHHHHHH-HHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 4 ERWNPTQNVRTILLSV-ISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI-~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
++|+|+++|++||++| ++||.+||+++|+|.+||.+|++++ ++|.++||+||++||..
T Consensus 99 ~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~------~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 99 QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADR------VGFDALLREHVSTHATP 157 (171)
T ss_dssp HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCH------HHHHHHHHHHHHHHCCH
T ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH------HHHHHHHHHHHHHHcCh
Confidence 4699999999999998 7999999999999999999999997 99999999999999985
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.43 E-value=1.7e-13 Score=106.25 Aligned_cols=58 Identities=28% Similarity=0.573 Sum_probs=54.7
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhcccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRI 66 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~ 66 (139)
.++|+|+++|++||++|++||.+||+.+|+|.+||.+|++++ +.|.++||+|+++...
T Consensus 113 ~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~------~~f~~~v~~~v~~~~~ 170 (180)
T 2nvu_C 113 REDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR------RLFEQNVQRSMRGGYI 170 (180)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCH------HHHHHHHHHHHHSEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH------HHHHHHHHHHHhhCCc
Confidence 478999999999999999999999999999999999999997 9999999999997754
No 39
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.41 E-value=7.6e-14 Score=107.31 Aligned_cols=52 Identities=46% Similarity=0.751 Sum_probs=23.0
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChH-HHHHHHHHH
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDK-EYENIIRKQ 60 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~-~y~~~ar~~ 60 (139)
.++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ + +|.++||++
T Consensus 120 ~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~------~~~f~~~vr~~ 172 (172)
T 2awf_A 120 EERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR------NGEFKRKVARC 172 (172)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHSCC-----------------------------------
T ss_pred CCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCc------HHHHHHHHHhC
Confidence 478999999999999999999999999999999999999997 8 999999874
No 40
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.38 E-value=3.9e-13 Score=103.28 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=49.4
Q ss_pred CCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhc
Q psy634 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63 (139)
Q Consensus 4 e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~ 63 (139)
++|+|+++|++||++|++||.+||+++|+|.+||.+|++++ ++|.++ |++|++
T Consensus 116 ~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~------~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 116 EKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE------SLYRTI-LRLFNR 168 (169)
T ss_dssp GGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCH------HHHHHH-HHHHC-
T ss_pred cCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH------HHHHHH-HHHhhC
Confidence 68999999999999999999999999999999999999997 999998 887764
No 41
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.05 E-value=5.3e-11 Score=100.10 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=53.5
Q ss_pred CCCCcccc-cHHHHHHHHHHhhc--CCCCCCCCcHHH--HHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 3 CERWNPTQ-NVRTILLSVISLLN--EPNTSSPANVDA--SVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 3 ~e~WsPt~-~V~~ILlSI~sLL~--ePN~~sPlN~dA--A~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.+.|+|++ +|++||++|++||. +||+.+|+|.++ +.+|++++ ..|.++||.||++||+.
T Consensus 181 ~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~------~~Y~~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 181 EEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSS------REYDGNIRQATVKWAML 244 (323)
T ss_dssp GGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHH------HHHHHHHHHHHHHHTTH
T ss_pred cCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhH------HHHHHHHHHHHHHHhhH
Confidence 47899999 89999999999996 788899999987 57899987 99999999999999875
No 42
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=98.96 E-value=8.1e-10 Score=84.07 Aligned_cols=50 Identities=12% Similarity=0.379 Sum_probs=44.6
Q ss_pred CCCCcccccHHHHHH-HHHHhhcC--CCCCCCCcHHHHHHHHhccCCCCChHHHHHHHH
Q psy634 3 CERWNPTQNVRTILL-SVISLLNE--PNTSSPANVDASVMYRRWRDSKGCDKEYENIIR 58 (139)
Q Consensus 3 ~e~WsPt~~V~~ILl-SI~sLL~e--PN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar 58 (139)
++.|+|+++|++||+ +|++||.. ||+.+|+|.+||.+|++++ ++|.++||
T Consensus 111 ~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~------~~f~~~vr 163 (167)
T 4ds2_A 111 NDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFP------QDFAARVR 163 (167)
T ss_dssp HTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCH------HHHHHHHT
T ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCH------HHHHHHHh
Confidence 368999999999765 57788875 8999999999999999997 99999998
No 43
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=97.99 E-value=4e-07 Score=70.66 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
.++|+|+++|++||++|++||.+|++. .+|+.++ .+|.+.+++++.+..
T Consensus 133 ~~~WsP~~ti~~VL~sI~slL~~p~a~--------~~~~~~~------~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 133 KQGWSSAYSIESVIMQINATLVKGKAR--------VQFGANK------NQYNLARAQQSYNSI 181 (186)
T ss_dssp TTTCCTTSCHHHHHHHHHHHHHHTTCE--------ECTTCCT------TCCCHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHcCCChh--------HhhccCH------HHHhHHHHHHHHHHH
Confidence 478999999999999999999999652 3455554 678888887776554
No 44
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=97.91 E-value=7.7e-06 Score=63.36 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCCcccCCchHHH
Q psy634 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDGVKIPMTLEDY 82 (139)
Q Consensus 3 ~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~Gv~vp~t~~ey 82 (139)
.++|+|+++|++||++|++||.+||+....- . .....| ..|.+.++.|..+.+.- ....|.-.++|
T Consensus 104 ~~~W~P~~ti~~vL~si~sll~~p~p~~g~~---~-~~~~~r------~~~a~~s~~~~~~~~~f----~~~fp~~~~~~ 169 (187)
T 2f4w_A 104 PDTWNPAWSVSTILTGLLSFMVEKGPTLGSI---E-TSDFTK------RQLAVQSLAFNLKDKVF----CELFPEVVEEI 169 (187)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHSCCCCTTBC---C-CCHHHH------HHHHHHHHHHHHTCHHH----HHHCHHHHHHH
T ss_pred ccCCCCcCcHHHHHHHHHHHhcCCCCCCccc---c-cChHHH------HHHHHHHHHHhhcCchH----HHhhHHHHHHH
Confidence 5789999999999999999999999874411 0 011112 55666777776654321 12345555555
Q ss_pred hhhhc
Q psy634 83 CIKAK 87 (139)
Q Consensus 83 c~k~k 87 (139)
+.+.+
T Consensus 170 ~~~~~ 174 (187)
T 2f4w_A 170 KQKQK 174 (187)
T ss_dssp C----
T ss_pred HHHHH
Confidence 55443
No 45
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=74.43 E-value=0.63 Score=33.23 Aligned_cols=35 Identities=3% Similarity=-0.059 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccc
Q psy634 27 NTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIE 67 (139)
Q Consensus 27 N~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ 67 (139)
.+-.|....+|.+|++++ ..|.++||.|+..++..
T Consensus 22 ~~~~PQDA~VA~qy~~~~------~~f~~TAr~WT~~~a~~ 56 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQY------ANDNGVDGEWTYDDATK 56 (108)
T ss_dssp -----------------------------------------
T ss_pred ccCCchhHHHHHHHHhch------hccccccccccccCcCC
Confidence 345799999999999997 99999999999766653
No 46
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=36.51 E-value=45 Score=26.79 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=38.0
Q ss_pred CCCCCCcccccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccccccCCCCc
Q psy634 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDGV 73 (139)
Q Consensus 1 l~~e~WsPt~~V~~ILlSI~sLL~ePN~~sPlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a~~ae~~Gv 73 (139)
||...++++.++.=+..+..-+..=|+.++|-|. |-++ ..|+.+++.|+......+.|.|+
T Consensus 146 LPP~e~q~~~SL~FLd~aT~iIh~LP~w~~~s~n-----~~k~-------~ayeqis~aW~~vi~ea~kr~~g 206 (245)
T 3q5w_A 146 LPPYSTCFEKNITFLDAATNVVHELPEFHNPNHN-----VYKS-------QAYYELTGAWLVVLRQLEDRPVV 206 (245)
T ss_dssp STBTCCCHHHHHHHHHHHHHHHHTSCCCSSSGGG-----HHHH-------HHHHHHHHHHHHHHHTTSSSSSC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHCCCCCchhhH-----HHHH-------HHHHHHHHHHHHHHHHHHhcccc
Confidence 3433455554444444444555555999988543 2222 67999999999877777666543
No 47
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.07 E-value=1.4e+02 Score=21.60 Aligned_cols=29 Identities=0% Similarity=-0.030 Sum_probs=14.1
Q ss_pred CCcHHHHHHHHhccCCCCChHHHHHHHHHHHhccc
Q psy634 31 PANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGR 65 (139)
Q Consensus 31 PlN~dAA~~yr~nr~~~~~~~~y~~~ar~~v~~~a 65 (139)
-+..+|..++.+=- +.|....-..+...+
T Consensus 37 ~Is~eA~vliakA~------ElFI~~Lt~~A~~~a 65 (140)
T 2byk_A 37 LITNEVLFLMTKCT------ELFVRHLAGAAYTEE 65 (140)
T ss_dssp CCCHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 35555555554432 555555444444333
Done!