RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy634
(139 letters)
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 57.8 bits (139), Expect = 4e-12
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63
E W P + +I+ + L EPN P N +A+ + + R + +E +++ + G
Sbjct: 91 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR------RLFEQNVQRSMRG 144
Query: 64 GRIEADKDGVKIPMTLEDYCIK 85
G I T + C+K
Sbjct: 145 G---------YIGSTYFERCLK 157
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 56.7 bits (136), Expect = 1e-11
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
P ERW P V TILLSVIS+L +PN SPANVDA+ M R E++ + + V
Sbjct: 102 PEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENY------AEFKKKVAQCV 155
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 56.7 bits (136), Expect = 1e-11
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+ ERW+P Q+V ILLSV+S+L+EPN S AN+DA +++R R E+E ++
Sbjct: 104 LAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNR------PEFERQVKLS 157
Query: 61 V 61
+
Sbjct: 158 I 158
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 55.2 bits (132), Expect = 5e-11
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSG 63
E W + +VRTILLS+ SLL EPN +SP N A+ M+ EY+ ++ ++
Sbjct: 99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN-------QTEYKKVLHEKYK- 150
Query: 64 GRIEADK 70
++DK
Sbjct: 151 -TAQSDK 156
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 54.7 bits (131), Expect = 5e-11
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIR 58
E+WN + +ILL++ +L+ P +P N++A+ + + Y I+R
Sbjct: 97 EKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE------SLYRTILR 145
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 54.0 bits (129), Expect = 1e-10
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVS 62
E+W+ +VRTILLS+ SLL EPN SP N A+ ++ ++ K + KQV+
Sbjct: 91 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW---KNPTAFKKYLQETYSKQVT 146
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 51.7 bits (123), Expect = 7e-10
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+ E W P +L ++ L+N PN P +D + + + + + +
Sbjct: 88 ISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNP------ELFRKNAEEF 141
Query: 61 V 61
Sbjct: 142 T 142
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 51.7 bits (123), Expect = 9e-10
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
RW PT +V +IL S+ SL N+PN +SPANV+A+ +++ + +Y +++ V
Sbjct: 93 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHK------SQYVKRVKETV 144
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 51.3 bits (122), Expect = 1e-09
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+ W+P +++ L+S+ +LL P + P + + + Y R R + +
Sbjct: 90 ILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDR------ESFNKTAALW 143
Query: 61 V 61
Sbjct: 144 T 144
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 50.9 bits (121), Expect = 1e-09
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+ E W P ++ S+I+L+N+P P D + Y + R K++ +
Sbjct: 87 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDR------KKFCKNAEEF 140
Query: 61 V 61
Sbjct: 141 T 141
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 50.1 bits (119), Expect = 3e-09
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQ 60
+ W+P +RT+LLS+ +LL PN + P D + + + + + R+
Sbjct: 90 VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNE------QGAKAKAREW 143
Query: 61 V 61
Sbjct: 144 T 144
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 50.2 bits (119), Expect = 3e-09
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
+ W P ++ ILL + LLNEPN PA +A +Y + R EYE +R Q
Sbjct: 97 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR------VEYEKRVRAQA 150
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 50.1 bits (119), Expect = 3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W+PT +V IL S+ SLL+EPN +SPAN A+ +Y+ R +EYE +++ V
Sbjct: 95 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENR------REYEKRVQQIV 144
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 49.4 bits (117), Expect = 5e-09
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIR 58
W +R +LL++ LL PN S N +A + +EY R
Sbjct: 96 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENY------EEYAARAR 144
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 49.1 bits (116), Expect = 9e-09
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
++W +RT+LLS+ +LL P + + Y++ + ++ R
Sbjct: 98 DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP------EMFKQTARLWA 149
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 47.1 bits (111), Expect = 4e-08
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
+ W+P + +LLS+ SLL + N + P + Y R E++ + R+
Sbjct: 92 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR------AEHDRMARQWT 143
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 46.3 bits (109), Expect = 6e-08
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
++W+P +RT+LLS+ +LL+ PN P D + ++ + R
Sbjct: 91 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE------AQAIETARAWT 143
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 45.6 bits (107), Expect = 1e-07
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W+P +RT LLS+ ++L +P + P + + + M + +
Sbjct: 105 HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENH------PLFVQTAKLWT 156
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 45.5 bits (107), Expect = 2e-07
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 5 RWNPTQNVRT-ILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W P + + + LL PN S P NV A+ + R ++ ++R+ V
Sbjct: 88 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADR------VGFDALLREHV 139
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 44.3 bits (104), Expect = 2e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEP 26
P ERW P V TI++SVIS+L +P
Sbjct: 101 PEERWLPIHTVETIMISVISMLADP 125
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 44.6 bits (105), Expect = 3e-07
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 4 ERWNPTQNVRTILLSVISLLNEP-NTSSPANVDASVMY 40
+W + +++ +L + L+ N P + Y
Sbjct: 102 AKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ-CY 138
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 43.6 bits (102), Expect = 7e-07
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 5 RWNPTQNVRTILLSVIS-LLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W ++ I S + LL PN P N DA+ MY +EY+ I++ +
Sbjct: 91 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRP------EEYKQKIKEYI 142
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 42.9 bits (100), Expect = 1e-06
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 6 WNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
W+P + +LLS+ SLL +PN P + + +Y+ R + Y + R+
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR------ERYNQLAREWT 142
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 42.2 bits (98), Expect = 2e-06
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQV 61
P W P+ N+ T+L S+ L++EPN P D S ++ + + R+
Sbjct: 94 PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNK------PAFLKNARQWT 147
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 42.0 bits (98), Expect = 3e-06
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 2 PCERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMY 40
W + T+LL + + P +
Sbjct: 98 TLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 136
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 42.1 bits (98), Expect = 3e-06
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPN--TSSPANVDASVMYRRWRDSKGCDKEYENIIR 58
+ W+ ++ ++++ + + L + AN + Y R + Y +I++
Sbjct: 111 QGWSSAYSIESVIMQINATLVKGKARVQFGANKNQ---YNLARA----QQSYNSIVQ 160
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 38.1 bits (88), Expect = 4e-05
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 4 ERWNPTQNVRTILLSVISLLN 24
E W+P +V+++ LS+IS+L+
Sbjct: 97 EDWSPALSVQSVCLSIISMLS 117
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 38.2 bits (88), Expect = 8e-05
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 1 MPCERWNPTQNVRTILLSVISLLNEPN--TSSPANVDA 36
+ WNP +V TIL ++S + E S D
Sbjct: 89 FHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDF 126
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 37.0 bits (85), Expect = 1e-04
Identities = 7/21 (33%), Positives = 17/21 (80%)
Query: 4 ERWNPTQNVRTILLSVISLLN 24
+ +NP+ ++ ++LS+IS+L+
Sbjct: 89 DDYNPSLSISGLVLSIISMLS 109
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 31.9 bits (72), Expect = 0.012
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 4 ERWNPTQNVRTILLSVISLLNEPN 27
N+ ++ ++SLL+EP
Sbjct: 126 CWDPAAMNLIMVVQELMSLLHEPP 149
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.5 bits (56), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 97 MTDFYVD-DYDLDDDDDEDEEEEGEEGAEEEGGDSGDDSGNGE 138
M+D + D D DD +EDE + E AEEEG ++ + +GE
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGE 43
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 24.6 bits (53), Expect = 2.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 82 YCIKAKTRPADTSMDMTDFYVDDYDLDDDDDEDEE 116
YC++AK S + DF D+ + E+
Sbjct: 13 YCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED 47
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 24.9 bits (54), Expect = 3.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 99 DFYVDDYDLDDDDDEDEEEEGEEGAEEEG 127
F +++ D E+E +G++ E+E
Sbjct: 59 TFNINNSIPPTFDGEEEPSQGQKVEEQEP 87
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La)
{Escherichia coli [TaxId: 562]}
Length = 94
Score = 24.1 bits (52), Expect = 4.0
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 24 NEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVSGGRIEADKDGVKIPMTLED 81
E A + Y R +G ++E + RK V ++ DK I + ++
Sbjct: 29 GELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVK--QLLLDKSLKHIEINGDN 84
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 24.6 bits (53), Expect = 5.0
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 3 CERWNPTQNVRTILLSVISLLNEPNTSSPANVDASVMYRRWRDSKGCDKEYENIIRKQVS 62
V+ IL SVIS L N + + RW + + I+R+ V
Sbjct: 38 IYNNIQPAGVQYILDSVISSLLA-NPTRRFIYVEIAFFSRWWRQQ--TNATQKIVRELVR 94
Query: 63 GGRIE 67
GR+E
Sbjct: 95 QGRLE 99
>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 24.1 bits (52), Expect = 8.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 86 AKTRPADTSMDMTDFYVDDYDLDDDDDEDEEEEG 119
K P + ++ D +D L D++ + E
Sbjct: 201 KKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLED 234
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic
initiation translation factor 5a (eIF5a) {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 67
Score = 22.8 bits (49), Expect = 8.7
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 95 MDMTDFYVDDYDLDDDDDEDEEEEGEEGAEEE 126
MDM + + +D ++ ++ +EG E
Sbjct: 19 MDMETYETFEVPIDTGVADEIRDQLKEGINVE 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.132 0.386
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 545,687
Number of extensions: 24399
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 43
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (22.7 bits)