BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6340
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
R+ MR HT +H+L AL RVL +Q ++ +D LD S Y + +S + + +E
Sbjct: 606 RIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY-KRISEEELKEIEML 664
Query: 61 INDVIADQVQVDRRHMRAS--------EIYPDDVI------LIDISDKENVISREPCCGT 106
N ++ + +V + + +Y V+ ++ I D + + C GT
Sbjct: 665 ANRIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPGREIRVVKIEDWD----VQACGGT 720
Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 138
H+ +TG + ++ + GV I GE
Sbjct: 721 HLPSTGLVGPIKILRTERIQDGVERIIFACGE 752
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 29 KSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD 72
K VF+D+C L F+ YGE + AA+ Y N +QV+V
Sbjct: 124 KVSMVFTDKCHLTFTHYGEE---SAQAALHTYFNIGDINQVEVQ 164
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 GCMRAHTTSHLLNAALRRVLTC----TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 59
GC++ SH N + L C Y +SC++ D C L TLS+ +AA
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 60 YI 61
I
Sbjct: 132 RI 133
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 30.4 bits (67), Expect = 0.46, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVY 45
R+ MR HT +H+L AL RVL +Q ++ +D LD S Y
Sbjct: 606 RIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY 650
>pdb|3MZ1|A Chain A, The Crystal Structure Of A Possible Transcription
Regulator From Sinorhizobium Meliloti 1021
pdb|3MZ1|B Chain B, The Crystal Structure Of A Possible Transcription
Regulator From Sinorhizobium Meliloti 1021
pdb|3MZ1|C Chain C, The Crystal Structure Of A Possible Transcription
Regulator From Sinorhizobium Meliloti 1021
pdb|3MZ1|D Chain D, The Crystal Structure Of A Possible Transcription
Regulator From Sinorhizobium Meliloti 1021
Length = 300
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 6 MRAHTTSHLLNAALRRVLTCT-----YQKSCRVFSDECALDFSV 44
+ AH + LLN RRVL Y+++ R+ SD LD S+
Sbjct: 36 LEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELDGSL 79
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 32 RVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRR 74
R+ C ++ S +G ++ +VEKYIND DQ V R
Sbjct: 77 RLCEGNCVIEQSTHGAV----TIGSVEKYINDTAWDQGWVKPR 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,292
Number of Sequences: 62578
Number of extensions: 159028
Number of successful extensions: 367
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)