Query psy6340
Match_columns 158
No_of_seqs 109 out of 1134
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:55:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 3.4E-39 7.4E-44 283.7 16.4 151 1-156 559-722 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 7.1E-37 1.5E-41 274.0 17.5 152 1-157 590-756 (936)
3 PRK13902 alaS alanyl-tRNA synt 100.0 1.1E-36 2.5E-41 272.3 17.9 151 1-156 585-750 (900)
4 TIGR03683 A-tRNA_syn_arch alan 100.0 1.1E-36 2.5E-41 272.4 17.5 151 1-156 589-754 (902)
5 TIGR00344 alaS alanine--tRNA l 100.0 1.1E-36 2.4E-41 271.6 17.1 151 1-156 552-715 (851)
6 PRK00252 alaS alanyl-tRNA synt 100.0 1.5E-36 3.4E-41 271.3 16.8 151 1-156 545-708 (865)
7 COG2872 Predicted metal-depend 100.0 4.1E-33 8.9E-38 216.4 12.3 133 1-141 91-239 (241)
8 KOG0188|consensus 100.0 4.9E-33 1.1E-37 238.2 13.2 151 1-153 563-726 (895)
9 PRK01584 alanyl-tRNA synthetas 100.0 2.4E-32 5.2E-37 234.6 15.1 131 1-136 449-592 (594)
10 PLN02961 alanine-tRNA ligase 100.0 1.2E-30 2.7E-35 202.1 12.0 126 1-135 78-222 (223)
11 PRK12305 thrS threonyl-tRNA sy 99.9 3E-24 6.5E-29 186.0 16.9 144 5-155 7-174 (575)
12 KOG2105|consensus 99.9 3.3E-24 7.2E-29 168.5 11.7 148 1-155 104-264 (415)
13 PLN02837 threonine-tRNA ligase 99.9 1.3E-23 2.9E-28 183.1 16.3 146 2-155 41-215 (614)
14 PRK00413 thrS threonyl-tRNA sy 99.9 5.7E-22 1.2E-26 173.6 16.4 145 4-155 68-239 (638)
15 PRK12444 threonyl-tRNA synthet 99.9 1.3E-21 2.7E-26 171.6 16.3 143 5-155 73-243 (639)
16 PLN02908 threonyl-tRNA synthet 99.9 1.8E-20 3.9E-25 165.3 15.6 145 5-155 120-290 (686)
17 TIGR00418 thrS threonyl-tRNA s 99.8 2.1E-19 4.6E-24 155.5 13.6 141 8-155 1-168 (563)
18 COG0441 ThrS Threonyl-tRNA syn 99.8 1.1E-17 2.4E-22 144.2 13.1 138 6-154 28-187 (589)
19 PF07973 tRNA_SAD: Threonyl an 99.7 5E-18 1.1E-22 99.5 5.0 44 86-133 1-44 (44)
20 smart00863 tRNA_SAD Threonyl a 99.6 9.1E-16 2E-20 89.8 4.8 44 86-133 1-44 (44)
21 PRK14799 thrS threonyl-tRNA sy 98.9 1.6E-08 3.6E-13 87.5 9.7 109 25-155 23-136 (545)
22 KOG1637|consensus 98.0 3.3E-06 7.2E-11 71.1 1.8 92 7-154 69-160 (560)
23 COG1854 LuxS LuxS protein invo 78.6 13 0.00027 27.4 6.6 55 7-66 52-112 (161)
24 PRK02260 S-ribosylhomocysteina 76.9 9.6 0.00021 28.1 5.7 55 6-65 51-111 (158)
25 PF02664 LuxS: S-Ribosylhomocy 72.5 17 0.00037 26.8 6.0 63 5-72 49-118 (157)
26 PHA02684 ORF066 virion protein 54.8 13 0.00028 27.6 2.6 26 99-124 4-29 (221)
27 PF10750 DUF2536: Protein of u 41.4 18 0.00038 22.8 1.3 20 51-70 17-36 (68)
28 PRK06737 acetolactate synthase 32.0 95 0.0021 19.9 3.7 50 13-65 18-68 (76)
29 PF10642 Tom5: Mitochondrial i 29.6 98 0.0021 18.2 3.2 22 49-70 9-30 (49)
30 KOG3943|consensus 27.3 1E+02 0.0023 24.5 3.8 31 124-154 38-68 (291)
31 PF07315 DUF1462: Protein of u 24.6 2.2E+02 0.0049 19.0 5.4 42 14-68 24-65 (93)
32 PF02878 PGM_PMM_I: Phosphoglu 21.5 2.9E+02 0.0062 19.1 5.2 50 14-63 81-133 (137)
33 PF07687 M20_dimer: Peptidase 21.3 1.3E+02 0.0028 19.4 3.1 33 33-67 74-106 (111)
34 PF03147 FDX-ACB: Ferredoxin-f 21.1 2.3E+02 0.0051 18.3 4.2 32 38-69 58-89 (94)
35 COG4973 XerC Site-specific rec 21.0 67 0.0014 25.8 1.7 21 5-25 242-268 (299)
36 TIGR01555 phge_rel_HI1409 phag 20.5 2.8E+02 0.006 23.6 5.5 51 13-64 326-376 (404)
37 PF10752 DUF2533: Protein of u 20.2 1.8E+02 0.004 19.0 3.4 21 49-69 45-65 (84)
38 COG1885 Uncharacterized protei 20.1 1.2E+02 0.0026 20.8 2.6 17 99-115 50-66 (115)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-39 Score=283.75 Aligned_cols=151 Identities=34% Similarity=0.527 Sum_probs=145.3
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+++|++|||+|||.+||++++| +++|+|+.+.++..||||..+++ +|.+++++||+.+|++|.++.|+.
T Consensus 559 rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~-it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~ 637 (879)
T COG0013 559 RRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKA-LTAEELKEIERLVNEIIRENLPVKTEEMDLD 637 (879)
T ss_pred HHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCC-CCHHHHHHHHHHHHHHHHcCCceeEEEccHH
Confidence 799999999999999999999999 99999999999999999999988 999999999999999999999753
Q ss_pred -----HHHHhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340 73 -----RRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG 147 (158)
Q Consensus 73 -----~~~~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~ 147 (158)
+++++|++.|++.||||+||+ +++++||||||+|||+||.|+|++.++++.|++||++++|..|.+++++.
T Consensus 638 eAk~~Ga~alfGekY~~~VRVV~ig~----~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~ 713 (879)
T COG0013 638 EAKAKGAMALFGEKYGDEVRVVEIGD----FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQ 713 (879)
T ss_pred HHHHhChHhhcCCcCCCeEEEEEECC----ceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHH
Confidence 468899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy6340 148 KQLSAAVKQ 156 (158)
Q Consensus 148 ~~~~~~~~~ 156 (158)
..++++++.
T Consensus 714 ~~~l~~~a~ 722 (879)
T COG0013 714 EDLLKEIAS 722 (879)
T ss_pred HHHHHHHHH
Confidence 999999874
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=7.1e-37 Score=274.03 Aligned_cols=152 Identities=30% Similarity=0.439 Sum_probs=141.1
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++|++++|| ++++.|+++.++++|+||..+++ ++++++.+||+.||++|.++.|+.
T Consensus 590 rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNe~I~~n~pV~~~~~~~e 668 (936)
T PLN02900 590 RRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP-MTPEELREVESLVNEWIGDALPVEAKEMPLA 668 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence 799999999999999999999999 78889999999999999998777 999999999999999999999763
Q ss_pred H------HHHhhcccCCCcEEEEEeCCCCcee-eeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340 73 R------RHMRASEIYPDDVILIDISDKENVI-SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 145 (158)
Q Consensus 73 ~------~~~~~~~~~~~~~riv~i~~~~~~~-~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~ 145 (158)
+ ++.++++.|++.+|||+|++ + +.++||||||.||++||.|+|+++++.++|++||++++|++|.+++.
T Consensus 669 EA~~~~g~~~~f~e~y~~~VRVV~Ig~----~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~ 744 (936)
T PLN02900 669 DAKRINGLRAVFGEKYPDPVRVVSVGG----VYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAIN 744 (936)
T ss_pred HHhhccChHhhcCCCCCCcEEEEEECC----ccceeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHH
Confidence 2 33456778999999999999 8 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q psy6340 146 NGKQLSAAVKQT 157 (158)
Q Consensus 146 ~~~~~~~~~~~~ 157 (158)
+...++.+++.+
T Consensus 745 ~~~~~l~~l~~~ 756 (936)
T PLN02900 745 AADSLERELDSA 756 (936)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 3
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-36 Score=272.29 Aligned_cols=151 Identities=24% Similarity=0.399 Sum_probs=138.4
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++|++++|| ++++.|++++++.+|+||..++. ++++++.+||+.+|++|.+++|+.
T Consensus 585 rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~ 663 (900)
T PRK13902 585 RRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKR-ITREEVKEIERLANEIVMENRPVKVEWMDRN 663 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEecCHH
Confidence 799999999999999999999999 89999999999999999998776 999999999999999999999863
Q ss_pred HHHH-----hh--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340 73 RRHM-----RA--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 145 (158)
Q Consensus 73 ~~~~-----~~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~ 145 (158)
+|.. ++ ++.|.+.+|||+|++ +|.++||||||.||++||.|+|++.++.++|++||++++|++|+++++
T Consensus 664 eA~~~~~~~l~~~g~~~~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~ 739 (900)
T PRK13902 664 EAEQKYGFRLYQGGVPPGKTIRVVEIGD----WDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQ 739 (900)
T ss_pred HHHhccchhhhccCCCCCCeEEEEEECC----eeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHH
Confidence 3322 12 245667899999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy6340 146 NGKQLSAAVKQ 156 (158)
Q Consensus 146 ~~~~~~~~~~~ 156 (158)
+.++.+.+++.
T Consensus 740 ~~~~~l~~~a~ 750 (900)
T PRK13902 740 ELEDLLKEAAE 750 (900)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 4
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=1.1e-36 Score=272.36 Aligned_cols=151 Identities=26% Similarity=0.399 Sum_probs=138.0
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++|++++|| ++++.|+++.++.+++||..++. ++++++.+||+.+|++|.+++|+.
T Consensus 589 rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~ 667 (902)
T TIGR03683 589 RRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKR-ISEEEIKEIERLANRIVMENRPVSVKWMDRN 667 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 799999999999999999999999 89999999999999999998776 999999999999999999999863
Q ss_pred HHHH-----hh--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340 73 RRHM-----RA--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 145 (158)
Q Consensus 73 ~~~~-----~~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~ 145 (158)
+|.. ++ +..|.+.+|||+||+ +|.+|||||||.||++||.|+|++.++.++|++||++++|++|+++++
T Consensus 668 eA~~~~~~~l~~~~~~~~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~ 743 (902)
T TIGR03683 668 EAEQKYGFRLYQGGVPPGREIRVVEIED----WDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQ 743 (902)
T ss_pred HHHhcCchhhhccCCCCCCeEEEEEECC----eeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHH
Confidence 3322 22 234567899999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy6340 146 NGKQLSAAVKQ 156 (158)
Q Consensus 146 ~~~~~~~~~~~ 156 (158)
+.++++++++.
T Consensus 744 ~~~~~l~~~a~ 754 (902)
T TIGR03683 744 ELEDLLRESSD 754 (902)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 5
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.1e-36 Score=271.56 Aligned_cols=151 Identities=29% Similarity=0.468 Sum_probs=139.4
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++||+++|| .+++.|++++++++|+||..+++ ++++++.+||+.||++|++++|+.
T Consensus 552 rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNelI~~n~pV~~~~~~~e 630 (851)
T TIGR00344 552 RRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA-LTREELEKIEDLVNEQILANIPIKVIFMDLD 630 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-CCHHHHHHHHHHHHHHHHhCCceEEEEeCHH
Confidence 699999999999999999999998 88999999999999999998766 999999999999999999999863
Q ss_pred HHH-----HhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340 73 RRH-----MRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG 147 (158)
Q Consensus 73 ~~~-----~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~ 147 (158)
+|. .++++.|++.+|||+||+ ++.+|||||||.||++||.|+|++.++.++|++||++++|++|++++.+.
T Consensus 631 eA~~~~~~~~~~e~y~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~ 706 (851)
T TIGR00344 631 EAKAKGAFALFGEKYGEKVRVVSVGD----VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQ 706 (851)
T ss_pred HHHhcchhhhcCCCCCCeEEEEEECC----eeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHH
Confidence 222 234567778899999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy6340 148 KQLSAAVKQ 156 (158)
Q Consensus 148 ~~~~~~~~~ 156 (158)
++.+.+++.
T Consensus 707 ~~~l~~l~~ 715 (851)
T TIGR00344 707 EDKLKELAD 715 (851)
T ss_pred HHHHHHHHH
Confidence 999999874
No 6
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-36 Score=271.32 Aligned_cols=151 Identities=32% Similarity=0.474 Sum_probs=139.4
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++|++++|| ++++.|++++++++++||..+++ ++++++.+||+.||++|.+++|+.
T Consensus 545 rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~-lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~ 623 (865)
T PRK00252 545 RRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEA-LTPEELRKIEDLVNEKIRENLPVETEEMSIE 623 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 799999999999999999999998 68889999999999999998766 999999999999999999999863
Q ss_pred HHH-----HhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340 73 RRH-----MRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG 147 (158)
Q Consensus 73 ~~~-----~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~ 147 (158)
+|. .++++.|++.+|||.||+ ++.+|||||||+||++||.|+|++.++.++|++||++++|++|++++.+.
T Consensus 624 eA~~~~~~~~~~~~y~~~VRVV~Ig~----~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~ 699 (865)
T PRK00252 624 EAKKMGAMALFGEKYGDEVRVVSIGD----FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQ 699 (865)
T ss_pred HHHhCCchhhccccCCCeEEEEEECC----ceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHH
Confidence 332 245567888999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy6340 148 KQLSAAVKQ 156 (158)
Q Consensus 148 ~~~~~~~~~ 156 (158)
++++.++++
T Consensus 700 ~~~l~~~~~ 708 (865)
T PRK00252 700 EALLKELAA 708 (865)
T ss_pred HHHHHHHHH
Confidence 999999875
No 7
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=216.41 Aligned_cols=133 Identities=27% Similarity=0.408 Sum_probs=117.7
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R 73 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~ 73 (158)
|||+|||+|||+|||++++.+.++ +...|++++++.+++||+.+. +++++.++++++|++|+++.++. +
T Consensus 91 rRy~~mr~HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e~---~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE 166 (241)
T COG2872 91 RRYRHMRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGED---TEDEIEEVEALANELVKENLPVIIYFIPREE 166 (241)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccc-ceeecceeccccccccccccc---chhhHHHHHHHHHHHHHcCCeeeeeecCHHH
Confidence 799999999999999999999998 888899999999999999763 68899999999999999999753 3
Q ss_pred HHHhhcc-----cC----CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHH
Q psy6340 74 RHMRASE-----IY----PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK 141 (158)
Q Consensus 74 ~~~~~~~-----~~----~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~ 141 (158)
+...++. .. +..+|+|+|++ +|.+|||||||+||+|||.|+|++.++++++.+||+|.+|+++.
T Consensus 167 ~~~~p~~~~~~~~~~~~~~g~iRiV~I~d----id~qpCgGtHVk~T~EIG~Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 167 AEKLPGLVKLKNKVPPDVEGKIRIVEIGD----IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred HhhCcChhhhcccCCccccceEEEEEECC----eeccCCCCcccCCccceEEEEEEEEEEecCceEEEEEEeccccc
Confidence 4443431 11 23699999999 99999999999999999999999999999999999999999874
No 8
>KOG0188|consensus
Probab=100.00 E-value=4.9e-33 Score=238.22 Aligned_cols=151 Identities=34% Similarity=0.496 Sum_probs=137.5
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH---------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV--------- 71 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~--------- 71 (158)
||+.+|++|||+|||++||+++++...++|+.+.|+.+++||...+. ++.+++..+|+.+|++|.++.++
T Consensus 563 rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~-lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ 641 (895)
T KOG0188|consen 563 RRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGA-LTKEQLKKVEDKINEFIQKNAPVYAKELPLAE 641 (895)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCC-CCHHHHHHHHHHHHHHHhcCCceEEEecCHHH
Confidence 79999999999999999999999668899999999999999998777 99999999999999999999964
Q ss_pred ----hHHHHhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340 72 ----DRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG 147 (158)
Q Consensus 72 ----~~~~~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~ 147 (158)
++++.+|+|.||++||||.+|. ...++++.|||||+.||++||.|.|++.++..+|.+||..++|+.|.++...+
T Consensus 642 ak~i~glr~v~~E~YPdpVRVVsvg~-~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a 720 (895)
T KOG0188|consen 642 AKKIPGLRAVFDEVYPDPVRVVSVGA-GQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLA 720 (895)
T ss_pred HhcCCCcccccCCccCCceEEEEecc-ccccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHH
Confidence 2456788999999999999985 34567999999999999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q psy6340 148 KQLSAA 153 (158)
Q Consensus 148 ~~~~~~ 153 (158)
..+.+.
T Consensus 721 ~~~~~~ 726 (895)
T KOG0188|consen 721 EDLDKD 726 (895)
T ss_pred HHHHhh
Confidence 854333
No 9
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-32 Score=234.56 Aligned_cols=131 Identities=31% Similarity=0.429 Sum_probs=118.9
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
+|+.+|++|||+|||++||+++|| ...+.|+++.++++|+||..+++ ++++++.+||+.||++|+++.|+.
T Consensus 449 ~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~-it~edL~~IE~~vNeiI~~n~pV~~~~~s~e 527 (594)
T PRK01584 449 HSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK-MTDDEIKKVEDIVNLQIKNDLSVKKEVMSLE 527 (594)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence 367899999999999999999999 67889999999999999998776 999999999999999999999763
Q ss_pred HHHH-----hhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEe
Q psy6340 73 RRHM-----RASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT 136 (158)
Q Consensus 73 ~~~~-----~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~ 136 (158)
+|.. ++++.|++.+|||+||+ ++.++||||||.||++||.|+|++.+++++|++||+++.
T Consensus 528 EA~~~~~~~lf~e~y~~~VRVV~Igd----~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 528 EAREKGAMALFGEKYEDIVKVYEIDG----FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred HHHhcchhhhccccCCCcEEEEEECC----eeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 3332 45567888899999999 999999999999999999999999999999999999985
No 10
>PLN02961 alanine-tRNA ligase
Probab=99.97 E-value=1.2e-30 Score=202.07 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=101.5
Q ss_pred ChhhHHHHhHHHHHHHHHHHHH-hC-CeeecceeeeCCceEEEEecCCCCCCHHH----HHHHHHHHHHHHHccCcHh--
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRV-LT-CTYQKSCRVFSDECALDFSVYGETLSVDS----VAAVEKYINDVIADQVQVD-- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~-~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~----l~~iE~~~n~~I~~~~~~~-- 72 (158)
||+.+|++|||+|||++||+++ +| ...++|+++ +++.++||... ++.++ +.+||+.+|++|++++|+.
T Consensus 78 rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~~~---i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~ 153 (223)
T PLN02961 78 RRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYKGK---IPQGELDSKQDELEAEANELIAEGGKVSAA 153 (223)
T ss_pred HHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeeccc---CCHHHHHhHHHHHHHHHHHHHHcCCceeEE
Confidence 7999999999999999999997 66 445667765 67888998642 55544 5799999999999999864
Q ss_pred -----HHHHhhcccC------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEE
Q psy6340 73 -----RRHMRASEIY------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL 135 (158)
Q Consensus 73 -----~~~~~~~~~~------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~ 135 (158)
++....+... .+.+|+|+|++ +|.+|||||||.||+|||.|+|++++ +++|.+||+|.
T Consensus 154 ~~~~~ea~~~~~~~~~~~~~~~~~vRiV~I~~----~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~ 222 (223)
T PLN02961 154 VLPYDEAAELCGGSLPDYIAKDSTPRIVKIGD----SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT 222 (223)
T ss_pred EeCHHHHHHhcCCcCCCcCCCCCceEEEEECC----CccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence 3333321111 24699999999 99999999999999999999999986 56888899985
No 11
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3e-24 Score=186.04 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=117.6
Q ss_pred HHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHHh
Q psy6340 5 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHMR 77 (158)
Q Consensus 5 ~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~~ 77 (158)
.+.+|||+|||++|++++||.....+++..++++|+||+.+++ ++++++.+||+.||++|+++.|+. +|..+
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~-it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP-FTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 4679999999999999999844444555568999999998766 999999999999999999999763 45444
Q ss_pred hcc----------cCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEEEeCHHH
Q psy6340 78 ASE----------IYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGESS 140 (158)
Q Consensus 78 ~~~----------~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~~~g~~a 140 (158)
+.+ ..++.+|+|+||+ + .++|+||||+||++||.|+|+++++ .+++++||++++.|..
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~----~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~~ 160 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD----F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWETK 160 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC----E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCCH
Confidence 431 1123599999999 6 6899999999999999999999955 3789999999999874
Q ss_pred HHHHHHHHHHHHHhh
Q psy6340 141 KAAVENGKQLSAAVK 155 (158)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (158)
+.+.+..+.+++++
T Consensus 161 -~~l~~~~~~~~e~~ 174 (575)
T PRK12305 161 -EELKEYLKRLEEAK 174 (575)
T ss_pred -HHHHHHHHHHHHhh
Confidence 67777777777765
No 12
>KOG2105|consensus
Probab=99.91 E-value=3.3e-24 Score=168.50 Aligned_cols=148 Identities=21% Similarity=0.377 Sum_probs=120.6
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHH------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRR------ 74 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~------ 74 (158)
||+++|+.||++|||++++.+.|. +.+.++.++.-...++.+.+ + ++.+++..||+.+|+.|..-+|+.-.
T Consensus 104 kR~D~MQQHsGQHLitAvad~~fK-lkTtSWelG~~~sa~e~~~~-~-mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d 180 (415)
T KOG2105|consen 104 KRMDYMQQHSGQHLITAVADHLFK-LKTTSWELGRFRSAIELDTP-S-MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 180 (415)
T ss_pred HHhHHHHHhcchhHHHHHHHhhhc-cceeeeeccceeeccccCCC-C-ccHHHHHHHHHHHHHHHHhccchheeecccCC
Confidence 699999999999999999999997 66666666543344555553 4 89999999999999999999886411
Q ss_pred ---HHhhcccCC----CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340 75 ---HMRASEIYP----DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG 147 (158)
Q Consensus 75 ---~~~~~~~~~----~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~ 147 (158)
..+.+...| +++|+|.|+| +|.++||||||+||++|+.|+|++.++-.++.+-+.|.+|.+........
T Consensus 181 ~eVeqVS~~~~~D~haG~iRvvnI~~----vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mers 256 (415)
T KOG2105|consen 181 PEVEQVSGRGLPDDHAGPIRVVNIEG----VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERS 256 (415)
T ss_pred cchhhccCCCCcccccCceEEEeecC----ccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHh
Confidence 111111123 3699999999 99999999999999999999999999988887778888899999999999
Q ss_pred HHHHHHhh
Q psy6340 148 KQLSAAVK 155 (158)
Q Consensus 148 ~~~~~~~~ 155 (158)
+.++.++.
T Consensus 257 h~t~~a~t 264 (415)
T KOG2105|consen 257 HGTEKALT 264 (415)
T ss_pred cchHHHHH
Confidence 88887774
No 13
>PLN02837 threonine-tRNA ligase
Probab=99.91 E-value=1.3e-23 Score=183.07 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=119.4
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhCC-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340 2 RLGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R 73 (158)
Q Consensus 2 R~~~~~~HTa~HlL~~al~~~~~~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~ 73 (158)
|...+.+|||+|||++|++++||. ....|.. .++++|+||+. ++ ++++++.+||+.||++|.+|.|+. +
T Consensus 41 ~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~-~~~g~y~D~~~-~~-lt~edl~~IEk~m~~iI~~n~pI~~~~v~~eE 117 (614)
T PLN02837 41 EKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPW-IENGFYYDFDM-EP-LTDKDLKRIKKEMDRIISRNLPLVREEVSREE 117 (614)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cCCCEEEEecC-CC-CCHHHHHHHHHHHHHHHHcCCCEEEEEecHHH
Confidence 678899999999999999999983 3344555 46899999997 45 999999999999999999999763 4
Q ss_pred HHHhhc---ccC---------CCcEEEEEeCCCCceeeeecCCCccccccccc--ccEEEEeEeec-------CCCeEEE
Q psy6340 74 RHMRAS---EIY---------PDDVILIDISDKENVISREPCCGTHVFNTGHI--ESCTVIGYKSY-------NHGVRSI 132 (158)
Q Consensus 74 ~~~~~~---~~~---------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI--~~~~I~~~~~~-------~~~~~Ri 132 (158)
|...+. +.| .+.+|+|+||| ...++|+||||+||++| +.|+|+++++. ++.++||
T Consensus 118 A~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~----~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~~~~l~ri 193 (614)
T PLN02837 118 AQKRIMAINEPYKLEILEGIKEEPITIYHIGE----EWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEKNQMLQRI 193 (614)
T ss_pred HHHHHHHcCCchhHHHhccCCCCeEEEEEECC----eEEEecCCCCcccccccccceEEEEEeehhhhcccccCcceEEE
Confidence 444432 111 13589999997 55899999999999999 99999999883 6789999
Q ss_pred EEEeCHHHHHHHHHHHHHHHHhh
Q psy6340 133 KCLTGESSKAAVENGKQLSAAVK 155 (158)
Q Consensus 133 ~~~~g~~a~~~~~~~~~~~~~~~ 155 (158)
|++++|. ++.+.+....++|..
T Consensus 194 ~g~~~~~-~~~l~~~~~~~~e~~ 215 (614)
T PLN02837 194 YGTAWES-EEQLKAYLHFKEEAK 215 (614)
T ss_pred EEEecCC-HHHHHHHHHHHHHhh
Confidence 9999988 577888877777764
No 14
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=5.7e-22 Score=173.57 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=117.5
Q ss_pred hHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340 4 GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM 76 (158)
Q Consensus 4 ~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~ 76 (158)
..+.+|||+|||++|++++||.....+.+..++++|+||+.+.+ ++++++.+||+.||++|+++.|+ ++|..
T Consensus 68 ~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~-lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~ 146 (638)
T PRK00413 68 LEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP-FTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIE 146 (638)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 35678999999999999999844444455558999999997666 99999999999999999999975 34555
Q ss_pred hhcc---c--------CC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEe
Q psy6340 77 RASE---I--------YP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT 136 (158)
Q Consensus 77 ~~~~---~--------~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~ 136 (158)
+|.+ . .| +.++++++++ + .++|+||||+||++|+.|+|.+.++. +++++||++++
T Consensus 147 ~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~----~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~ 221 (638)
T PRK00413 147 LFKDRGEPYKVELIEEIPEDEEISLYRQGE----F-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTA 221 (638)
T ss_pred HHHhcCCccHHHHhhcCCCCCeEEEEEECC----E-EEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeee
Confidence 5432 1 12 2589999999 6 79999999999999999999998553 78899999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy6340 137 GESSKAAVENGKQLSAAVK 155 (158)
Q Consensus 137 g~~a~~~~~~~~~~~~~~~ 155 (158)
.+.. +.+....+.++++.
T Consensus 222 ~~~~-~~l~~~~~~~~e~~ 239 (638)
T PRK00413 222 FADK-KELDAYLHRLEEAK 239 (638)
T ss_pred cCCH-HHHHHHHHHHHHhc
Confidence 9885 66777777777664
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=1.3e-21 Score=171.59 Aligned_cols=143 Identities=15% Similarity=0.276 Sum_probs=116.7
Q ss_pred HHHHhHHHHHHHHHHHHHhCCe-eecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340 5 CMRAHTTSHLLNAALRRVLTCT-YQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM 76 (158)
Q Consensus 5 ~~~~HTa~HlL~~al~~~~~~~-~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~ 76 (158)
..-+||++|||.+|++++||.. ...|..+ ++++|+||+...+ ++++++.+||+.||++|.+++|+ ++|..
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~-~~g~y~d~~~~~~-it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~ 150 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGPVI-ENGFYYDMDLPSS-VNVEDLRKIEKEMKKIINENIKIERVEVSREEAAK 150 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCcC-CCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 3568999999999999999843 3334444 8999999998766 99999999999999999999975 35555
Q ss_pred hhcc---c-------C-C--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEe
Q psy6340 77 RASE---I-------Y-P--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT 136 (158)
Q Consensus 77 ~~~~---~-------~-~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~ 136 (158)
+|.+ . + | ..++++++++ + ++.|+||||+|||+|+.|+|++.++. +++++||++++
T Consensus 151 ~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~----~-~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a 225 (639)
T PRK12444 151 LFQEMNDRLKLELLEAIPSGESITLYKQGE----F-VDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA 225 (639)
T ss_pred HHhhcCCchHHHHHhcCCCCCeEEEEEECC----E-EEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe
Confidence 5542 1 1 2 2489999999 6 78899999999999999999998875 78899999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy6340 137 GESSKAAVENGKQLSAAVK 155 (158)
Q Consensus 137 g~~a~~~~~~~~~~~~~~~ 155 (158)
.|. .+.+......++|..
T Consensus 226 ~~~-~~~l~~~~~~~~~~~ 243 (639)
T PRK12444 226 FSS-QKELEEYLHFVEEAA 243 (639)
T ss_pred cCC-HHHHHHHHHHHHHhc
Confidence 987 577777777777764
No 16
>PLN02908 threonyl-tRNA synthetase
Probab=99.85 E-value=1.8e-20 Score=165.31 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=117.3
Q ss_pred HHHHhHHHHHHHHHHHHHhCCeeecceeeeC-CceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340 5 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFS-DECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM 76 (158)
Q Consensus 5 ~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~-~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~ 76 (158)
-+.+||++|||.+|++++||.....|.++.+ ++||+||...+..++++++..||+.|+++|++++|+ ++|..
T Consensus 120 ~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e 199 (686)
T PLN02908 120 DTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALE 199 (686)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHH
Confidence 4679999999999999999833455777754 789999985432399999999999999999999975 35655
Q ss_pred hhcc---------cCC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCH
Q psy6340 77 RASE---------IYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGE 138 (158)
Q Consensus 77 ~~~~---------~~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~ 138 (158)
+|.+ ..| +.++++++|+ + ++.|.||||+|||.|+.|+|++.++. +.++||||++++|
T Consensus 200 ~F~~~~~K~~ll~~~~~~~~v~vY~~g~----~-~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp 274 (686)
T PLN02908 200 MFSENKFKVEIINDLPEDATITVYRCGP----L-VDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFP 274 (686)
T ss_pred HHhhCCcHHHHHhhCCCCCeeEEEEECC----E-EEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccC
Confidence 5531 123 2489999999 6 88999999999999999999998853 5678999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy6340 139 SSKAAVENGKQLSAAVK 155 (158)
Q Consensus 139 ~a~~~~~~~~~~~~~~~ 155 (158)
.. +.+.+..++++|..
T Consensus 275 ~~-~~l~~~~~~~~e~~ 290 (686)
T PLN02908 275 DK-KLLKEYKHRIEEAK 290 (686)
T ss_pred Ch-HHHHHHHhhhhhcc
Confidence 95 66778888877764
No 17
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.82 E-value=2.1e-19 Score=155.49 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=114.9
Q ss_pred HhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHHhhc
Q psy6340 8 AHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHMRAS 79 (158)
Q Consensus 8 ~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~~~~ 79 (158)
+|||+|||.+|++++|+ .....|+.+ ++++|+||+...+ ++++++.+||+.||++|.++.|+. +|...+.
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~-~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~ 78 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRS-FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK 78 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh
Confidence 69999999999999998 445666666 7789999997666 999999999999999999999853 3433332
Q ss_pred --ccC----------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCHHH
Q psy6340 80 --EIY----------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGESS 140 (158)
Q Consensus 80 --~~~----------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~~a 140 (158)
+.| .+.++++.+++ +..+.|.||||+||+.|+.|+|.+.... ++.++||++++.|..
T Consensus 79 ~~~~~k~~Ll~~~~~~~~v~vy~~g~----~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~ 154 (563)
T TIGR00418 79 VLEPYKLELLDEIPNGVKRTPYGWGK----AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADK 154 (563)
T ss_pred ccChhHHHHHhcCCCCCeEEEEEeCC----EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCH
Confidence 222 24689999999 7899999999999999999999987763 568899999998884
Q ss_pred HHHHHHHHHHHHHhh
Q psy6340 141 KAAVENGKQLSAAVK 155 (158)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (158)
+.+.+....++|..
T Consensus 155 -~~l~~~~~~~~~~~ 168 (563)
T TIGR00418 155 -KQLAAYLLRLEEAK 168 (563)
T ss_pred -HHHHHHHHhhhhhh
Confidence 77777777776653
No 18
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-17 Score=144.17 Aligned_cols=138 Identities=16% Similarity=0.242 Sum_probs=113.8
Q ss_pred HHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHHhh
Q psy6340 6 MRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHMRA 78 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~~~ 78 (158)
--+||++|+|..|++++|+. ...|+. -+++||+||+...+ ++++|+..||+.|++++.+++++ +.+...|
T Consensus 28 ~~rhs~ah~l~~av~~l~p~-~~~gp~-ie~gfyyd~~~~~~-~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f 104 (589)
T COG0441 28 IIRHSCAHVLAQAVKRLYPD-VTIGPV-IEEGFYYDFDVKEP-ITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPF 104 (589)
T ss_pred hhhhHHHHHHHHHHHHhCCC-ccccCc-ccceeEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHh
Confidence 35899999999999999986 555644 48999999999877 99999999999999999999964 3455555
Q ss_pred cccC--------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCHHHHHH
Q psy6340 79 SEIY--------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGESSKAA 143 (158)
Q Consensus 79 ~~~~--------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~~a~~~ 143 (158)
+ .| +.++.+++-++ | .++|-|+||++|+.| .|+++++++. +++++|||+++. .....
T Consensus 105 ~-~yK~~~i~~~~~~~s~y~~~~----~-~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~-~~~~~ 176 (589)
T COG0441 105 G-PYKAELIDCKGHPLSEYSQGE----F-VDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF-ADKKE 176 (589)
T ss_pred h-hhHHHHHhcCCCCceeEecCc----c-ccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc-CCHHH
Confidence 4 22 34577777777 6 899999999999999 9999998864 788999999999 55777
Q ss_pred HHHHHHHHHHh
Q psy6340 144 VENGKQLSAAV 154 (158)
Q Consensus 144 ~~~~~~~~~~~ 154 (158)
+....+.++|.
T Consensus 177 l~~~l~~~eea 187 (589)
T COG0441 177 LEAYLKRLEEA 187 (589)
T ss_pred HHHHHhhhhhc
Confidence 77777766554
No 19
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.73 E-value=5e-18 Score=99.49 Aligned_cols=44 Identities=36% Similarity=0.548 Sum_probs=38.6
Q ss_pred EEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEE
Q psy6340 86 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 133 (158)
Q Consensus 86 ~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~ 133 (158)
+|+|+||+ ++.+|||||||+||++|+.|+|++.++.++|++|||
T Consensus 1 vRvv~i~~----~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD----FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETT----TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECC----eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 69999999 999999999999999999999999999999999997
No 20
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.61 E-value=9.1e-16 Score=89.78 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=41.3
Q ss_pred EEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEE
Q psy6340 86 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 133 (158)
Q Consensus 86 ~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~ 133 (158)
+|+|.|++ +|.+||+||||.||++||.|+|++.++.+.+++||+
T Consensus 1 vriv~i~~----~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD----FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECC----EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 58999999 999999999999999999999999999888888985
No 21
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.85 E-value=1.6e-08 Score=87.54 Aligned_cols=109 Identities=7% Similarity=0.035 Sum_probs=77.0
Q ss_pred CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhhcccCCCcEEEEEeCCCCceeeeecCC
Q psy6340 25 CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCC 104 (158)
Q Consensus 25 ~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~~~~~~~~~riv~i~~~~~~~~~~~Cg 104 (158)
++.......++-.||+|...+.. +|.++..+ +...|.=.. ....+. +++.+|. + +++|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~-------~~~~~~-~~~~~~~----~-~~~~~ 81 (545)
T PRK14799 23 GYKPVAVGLGERDFYIDVKSDTS-ITLDEVKK-------AINENVLAN-------VSIENN-QIVYKGN----K-VSIIE 81 (545)
T ss_pred CCCceEecccceeEEEecCCCcc-ccHHHHHH-------HHhcCccee-------eEeecC-cEEEccC----c-eeecC
Confidence 34444555678889999998765 77664433 222221000 001121 2334777 5 99999
Q ss_pred C-cccccccccccEEEEeEeec----CCCeEEEEEEeCHHHHHHHHHHHHHHHHhh
Q psy6340 105 G-THVFNTGHIESCTVIGYKSY----NHGVRSIKCLTGESSKAAVENGKQLSAAVK 155 (158)
Q Consensus 105 G-tHV~~T~eI~~~~I~~~~~~----~~~~~Ri~~~~g~~a~~~~~~~~~~~~~~~ 155 (158)
| |||+||+.|+.|+++++++. ++++||||+++++. ++.+.+....++|..
T Consensus 82 ~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~-~~~l~~~~~~~eea~ 136 (545)
T PRK14799 82 DKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET-EEQLKDYLTWLEKAE 136 (545)
T ss_pred CCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC-HHHHHHHHHHHHhcc
Confidence 9 99999999999999999985 57899999999988 577888888888765
No 22
>KOG1637|consensus
Probab=97.96 E-value=3.3e-06 Score=71.06 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhhcccCCCcE
Q psy6340 7 RAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDV 86 (158)
Q Consensus 7 ~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~~~~~~~~~ 86 (158)
.|||++|+|..|+++.+|.-...|+.+ +++||+|+ . +. ++.+++..||.
T Consensus 69 fwhssahvlg~a~e~~~g~~lc~Gpp~-~~gf~yd~-~-~~-i~~~d~~~~e~--------------------------- 117 (560)
T KOG1637|consen 69 FWHSSAHVLGEALEQEYGAHLCIGPPI-EEGFYYDM-L-DE-ISSNDFPSIEA--------------------------- 117 (560)
T ss_pred eeehhhhHhhHHHHHhcCeeEeeCCCC-cCceehhh-h-cc-ccccccccccc---------------------------
Confidence 589999999999999999333346765 78999998 4 33 43332222211
Q ss_pred EEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHHHHHHHHh
Q psy6340 87 ILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAV 154 (158)
Q Consensus 87 riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~~~~~~~~ 154 (158)
+||++|+.|+.|+|++.++. =..+.++|.- ..+.+..+++.|.
T Consensus 118 -------------------phi~~tg~ika~k~~~nss~-----yw~~~sfp~~-k~~k~~~~~~~Ea 160 (560)
T KOG1637|consen 118 -------------------PHIRHTGKIKAFKILKNSSA-----YWEGDSFPDP-KQLKEWEKFQEEA 160 (560)
T ss_pred -------------------ccccccceeeeeeeeccchh-----hhccccCCCH-HHHHHHHhhchhh
Confidence 99999999999999987764 0111156553 4455555555543
No 23
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=78.56 E-value=13 Score=27.43 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHHHHhC-CeeecceeeeCC----ceEEEEecCCCCCCHHHH-HHHHHHHHHHHH
Q psy6340 7 RAHTTSHLLNAALRRVLT-CTYQKSCRVFSD----ECALDFSVYGETLSVDSV-AAVEKYINDVIA 66 (158)
Q Consensus 7 ~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~----~~~~df~~~~~~~~~~~l-~~iE~~~n~~I~ 66 (158)
-.||.+||+...++.-.. .... .++.|- |||+-+.. . .+..++ ..+++.+.++..
T Consensus 52 ~iHTlEHL~A~~iRnh~~g~~~i--ID~SPMGCrTGFYm~l~G--~-~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 52 GIHTLEHLLAGFIRNHLNGNVEI--IDISPMGCRTGFYMILIG--T-PTSQDIADVLEATMKDVLK 112 (161)
T ss_pred chhhHHHHHHHHHHhcccCceeE--EEecCcccccceEEEEEC--C-CCHHHHHHHHHHHHHHHHc
Confidence 469999999999997553 2222 234453 56655543 2 455554 556777877776
No 24
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=76.85 E-value=9.6 Score=28.13 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHHHHHhCC-eeecceeeeC----CceEEEEecCCCCCCHHHHHHH-HHHHHHHH
Q psy6340 6 MRAHTTSHLLNAALRRVLTC-TYQKSCRVFS----DECALDFSVYGETLSVDSVAAV-EKYINDVI 65 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~~-~~~~g~~~~~----~~~~~df~~~~~~~~~~~l~~i-E~~~n~~I 65 (158)
.-.||.+||+...++.-... ... -+++| .|||+=.. +. .+.+++..+ ++.+..+.
T Consensus 51 ~alHTlEHL~At~lRn~~~~~~~i--I~~sPMGCrTGFYli~~--g~-~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 51 AGIHTLEHLLAGFLRNHLDGGVEI--IDISPMGCRTGFYLILI--GT-PDEEDVADALKATLEDVL 111 (158)
T ss_pred cchhHHHHHHHHHHhhCccCCceE--EEECCCccccccEEEEe--CC-CCHHHHHHHHHHHHHHHH
Confidence 35799999999999974332 112 23344 35655444 33 566666555 55555554
No 25
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=72.49 E-value=17 Score=26.80 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHHHHHhCC--eeecceeeeC----CceEEEEecCCCCCCHHHH-HHHHHHHHHHHHccCcHh
Q psy6340 5 CMRAHTTSHLLNAALRRVLTC--TYQKSCRVFS----DECALDFSVYGETLSVDSV-AAVEKYINDVIADQVQVD 72 (158)
Q Consensus 5 ~~~~HTa~HlL~~al~~~~~~--~~~~g~~~~~----~~~~~df~~~~~~~~~~~l-~~iE~~~n~~I~~~~~~~ 72 (158)
..-.||.+||+...++.-..+ ... -+++| .|||+=+.. . .+.+++ ..+++.++.++....+|+
T Consensus 49 ~~~lHTlEHL~A~~lRn~~~~~~~~i--I~~gPMGCrTGFYli~~g--~-~~~~~i~~l~~~~l~~i~~~~~eIP 118 (157)
T PF02664_consen 49 TAALHTLEHLFATYLRNHLDGDKDKI--IDFGPMGCRTGFYLILWG--D-PSSEDIADLLKETLEFILEFEGEIP 118 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTEEE--EEEEE-TTSSEEEEEEES--S---HHHHHHHHHHHHHHHHT-SSSST
T ss_pred CcchhHHHHHHHHHHhcCccCCCCeE--EEecCcccccccEEEEeC--C-CCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 356899999999999976541 222 22334 456665543 3 556654 666777777776554544
No 26
>PHA02684 ORF066 virion protein; Provisional
Probab=54.82 E-value=13 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=19.2
Q ss_pred eeecCCCcccccccccccEEEEeEee
Q psy6340 99 SREPCCGTHVFNTGHIESCTVIGYKS 124 (158)
Q Consensus 99 ~~~~CgGtHV~~T~eI~~~~I~~~~~ 124 (158)
++.-|||||+--...=-.+.++..-+
T Consensus 4 siyy~ggth~~~~ap~aa~vvl~~~g 29 (221)
T PHA02684 4 SIYYCGGTHLVAAAPGAALVLLDALG 29 (221)
T ss_pred ceEecCCeeeeecCCCceEEEecCCc
Confidence 47889999998777666666666544
No 27
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=41.36 E-value=18 Score=22.78 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHccCc
Q psy6340 51 VDSVAAVEKYINDVIADQVQ 70 (158)
Q Consensus 51 ~~~l~~iE~~~n~~I~~~~~ 70 (158)
..+++.+|+.+|+.|..+.+
T Consensus 17 A~~l~~LEkkIneqIe~Nka 36 (68)
T PF10750_consen 17 ANDLQTLEKKINEQIEHNKA 36 (68)
T ss_pred cchHHHHHHHHHHHHhcCce
Confidence 46799999999999997754
No 28
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=32.04 E-value=95 Score=19.89 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy6340 13 HLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 65 (158)
Q Consensus 13 HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I 65 (158)
++++..-++-|. ..-..|..-.++-.++.+...+ +++.+.+|.+.+++++
T Consensus 18 Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~---~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 18 RISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC---TENEATLLVSQLKKLI 68 (76)
T ss_pred HHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC---CHHHHHHHHHHHhCCc
Confidence 333433334344 2334444444566777777543 4677888888777665
No 29
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=29.65 E-value=98 Score=18.19 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCc
Q psy6340 49 LSVDSVAAVEKYINDVIADQVQ 70 (158)
Q Consensus 49 ~~~~~l~~iE~~~n~~I~~~~~ 70 (158)
+++++++..|+.++..|+.-.-
T Consensus 9 pS~eE~k~~e~~A~~Tvk~a~~ 30 (49)
T PF10642_consen 9 PSEEEIKAAEAQANFTVKNAAA 30 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999887653
No 30
>KOG3943|consensus
Probab=27.26 E-value=1e+02 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=28.1
Q ss_pred ecCCCeEEEEEEeCHHHHHHHHHHHHHHHHh
Q psy6340 124 SYNHGVRSIKCLTGESSKAAVENGKQLSAAV 154 (158)
Q Consensus 124 ~~~~~~~Ri~~~~g~~a~~~~~~~~~~~~~~ 154 (158)
+.-+|++=|++.+...-.+++++.+++++|+
T Consensus 38 ~lepG~~Gi~~tC~~HErQA~QEaysl~~El 68 (291)
T KOG3943|consen 38 QLEPGLQGILITCNMHERQAVQEAYSLLNEL 68 (291)
T ss_pred ccCCCcceEEEEccchHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999997
No 31
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=24.56 E-value=2.2e+02 Score=19.02 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHcc
Q psy6340 14 LLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 68 (158)
Q Consensus 14 lL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~ 68 (158)
-|.+||.+.|+... ..+ -|+|+..+. .+ ..-++.+++++.+.
T Consensus 24 WL~aal~RKyp~~~---f~~----~YiDi~~p~----~~--~~~~~~a~~I~ede 65 (93)
T PF07315_consen 24 WLEAALKRKYPDQP---FEF----TYIDIENPP----EN--DHDQQFAERILEDE 65 (93)
T ss_dssp HHHHHHHHH-TTS----EEE----EEEETTT----------HHHHHHHHHHHTTS
T ss_pred HHHHHHhCcCCCCc---eEE----EEEecCCCC----cc--HHHHHHHHHHHhcc
Confidence 47788898887221 222 367776432 22 33344555555544
No 32
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=21.47 E-value=2.9e+02 Score=19.11 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHHHHH-hC-CeeecceeeeCCceEEEEecCC-CCCCHHHHHHHHHHHHH
Q psy6340 14 LLNAALRRV-LT-CTYQKSCRVFSDECALDFSVYG-ETLSVDSVAAVEKYIND 63 (158)
Q Consensus 14 lL~~al~~~-~~-~~~~~g~~~~~~~~~~df~~~~-~~~~~~~l~~iE~~~n~ 63 (158)
++.+++.+. .. .+....+|-.++..-+.|...+ ..+++++.++||+.+++
T Consensus 81 ~~~~~~~~~~~~ggi~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 81 ALSFAIRQLNADGGIMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp HHHHHHHHHTESEEEEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred HhhhhccccccceeeEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 345555553 22 3444445544455557776654 22888889999988765
No 33
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=21.31 E-value=1.3e+02 Score=19.43 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=21.7
Q ss_pred eeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHc
Q psy6340 33 VFSDECALDFSVYGETLSVDSVAAVEKYINDVIAD 67 (158)
Q Consensus 33 ~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~ 67 (158)
+-|+.+++.++.- . ++.++++++.+.+.+.+.+
T Consensus 74 ~ip~~a~~~~~~R-~-~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 74 VIPDEATLTVDIR-Y-PPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EESSEEEEEEEEE-E-STCHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEEEE-C-CCcchHHHHHHHHHHHHHH
Confidence 3467777776653 2 4467788888877777764
No 34
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=21.08 E-value=2.3e+02 Score=18.31 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=20.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHccC
Q psy6340 38 CALDFSVYGETLSVDSVAAVEKYINDVIADQV 69 (158)
Q Consensus 38 ~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~ 69 (158)
+++-|...+.+++.+++.++-+.+-+.+.+.+
T Consensus 58 ~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~ 89 (94)
T PF03147_consen 58 YRLTYQSPDRTLTDEEVNEIHDKIIKALEKKL 89 (94)
T ss_dssp EEEEE--SSS---HHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56777766556999999998888777776544
No 35
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair]
Probab=21.02 E-value=67 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHhH-HHHHHHH-----HHHHHhCC
Q psy6340 5 CMRAHT-TSHLLNA-----ALRRVLTC 25 (158)
Q Consensus 5 ~~~~HT-a~HlL~~-----al~~~~~~ 25 (158)
||..|| |+|+|.+ +++.++|+
T Consensus 242 H~LRHSFAtHmLesSgDLRaVQELLGH 268 (299)
T COG4973 242 HKLRHSFATHMLESSGDLRAVQELLGH 268 (299)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhcc
Confidence 677787 6799954 67778883
No 36
>TIGR01555 phge_rel_HI1409 phage-related protein, HI1409 family. This model describes an uncharacterized family of proteins found in prophage regions of a number of bacterial genomes, including Haemophilus influenzae, Xylella fastidiosa, Salmonella typhi, and Enterococcus faecalis. Distantly related proteins can be found in the prophage-bearing plasmids of Borrelia burgdorferi.
Probab=20.47 E-value=2.8e+02 Score=23.57 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy6340 13 HLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDV 64 (158)
Q Consensus 13 HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~ 64 (158)
+.|.-+|++++.-+...+....|+.++++|+.-.+ +++++..++.+...+.
T Consensus 326 ~~l~p~l~~l~~~l~~s~~g~~p~~~~~~f~pL~~-~s~ke~Aei~~~~a~~ 376 (404)
T TIGR01555 326 NQLRPVLEVLMRCLMWAEDGCDPDDWSVEFNPLWN-VDSKTDAEIRKLTAET 376 (404)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCCCCeEEEeCcCCC-CCHHHHHHHHHHHHHH
Confidence 45555555544412111111236678999997766 8888887776665433
No 37
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=20.16 E-value=1.8e+02 Score=19.00 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC
Q psy6340 49 LSVDSVAAVEKYINDVIADQV 69 (158)
Q Consensus 49 ~~~~~l~~iE~~~n~~I~~~~ 69 (158)
++-+-+.+|.++||++-+.+.
T Consensus 45 Fs~d~IN~vT~~mN~LAk~gi 65 (84)
T PF10752_consen 45 FSTDKINEVTKEMNELAKQGI 65 (84)
T ss_pred CcHHHHHHHHHHHHHHHHcCC
Confidence 888999999999999999886
No 38
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.11 E-value=1.2e+02 Score=20.84 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=11.8
Q ss_pred eeecCCCcccccccccc
Q psy6340 99 SREPCCGTHVFNTGHIE 115 (158)
Q Consensus 99 ~~~~CgGtHV~~T~eI~ 115 (158)
..||-||+|+...--..
T Consensus 50 t~CP~Cg~~~e~~fvva 66 (115)
T COG1885 50 TSCPKCGEPFESAFVVA 66 (115)
T ss_pred ccCCCCCCccceeEEEe
Confidence 68999999876543333
Done!