Query psy6340
Match_columns 158
No_of_seqs 109 out of 1134
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:55:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kew_A DHHA1 domain protein; s 100.0 4.5E-37 1.5E-41 239.4 11.8 133 1-142 90-233 (241)
2 2e1b_A PH0108, 216AA long hypo 100.0 8.1E-35 2.8E-39 223.4 12.3 123 1-136 91-215 (216)
3 2zze_A Alanyl-tRNA synthetase; 100.0 4.3E-34 1.5E-38 249.7 15.5 133 1-138 605-752 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 6.4E-32 2.2E-36 235.9 14.9 132 1-138 592-738 (739)
5 1v4p_A Alanyl-tRNA synthetase; 100.0 2.1E-30 7.3E-35 189.5 16.6 130 4-138 4-152 (157)
6 1tke_A Threonyl-tRNA synthetas 100.0 3.5E-30 1.2E-34 198.4 15.0 128 4-138 68-224 (224)
7 1nyr_A Threonyl-tRNA synthetas 99.9 6E-27 2E-31 204.0 14.7 144 3-154 69-238 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 99.9 7.6E-26 2.6E-30 196.9 16.5 143 3-153 67-238 (642)
9 1j6x_A Autoinducer-2 productio 71.9 14 0.00047 26.3 6.4 54 6-65 52-109 (160)
10 1vje_A Autoinducer-2 productio 68.4 19 0.00066 25.7 6.6 55 6-66 54-112 (166)
11 1j98_A Autoinducer-2 productio 51.8 51 0.0018 23.3 6.4 55 6-65 51-113 (157)
12 1j6w_A Autoinducer-2 productio 34.3 1.3E+02 0.0044 21.6 7.4 56 6-66 51-113 (175)
No 1
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=4.5e-37 Score=239.41 Aligned_cols=133 Identities=17% Similarity=0.324 Sum_probs=115.9
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R 73 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~ 73 (158)
||+++|++|||+|||++||+++||. .+.|+++.++++|+||+ .+ ++++++.+||+.||++|++++|+. +
T Consensus 90 rR~~~~~~HTa~HLL~~al~~~~g~-~~~G~~v~~~~~r~Df~--~~-lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~e 165 (241)
T 3kew_A 90 RRFDGMQQHLGQHLLSGCFYDLFGA-NTCGFHLGKEISTVDIV--GF-LDEKTIREAEKEANRLIFENLEVKSYAPSKKE 165 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECSSCEEEEEE--SC-CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHCCC-CeEeccccCCeEEEEEC--CC-CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHH
Confidence 6999999999999999999999993 36899999999999999 45 999999999999999999999864 2
Q ss_pred HHHhh----cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHH
Q psy6340 74 RHMRA----SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKA 142 (158)
Q Consensus 74 ~~~~~----~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~ 142 (158)
|..++ .+.|++.+|+|+||+ +|.+|||||||+||++||.|+|++.++.+.+ .||++++|++|++
T Consensus 166 A~~~~~~~~~e~~~~~VRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~~-~RI~~~~G~~a~~ 233 (241)
T 3kew_A 166 LKKVKTRRALPKTDEEIRIVEIVG----LDLNACCGVHPRNTRDLQVIKIRRWEKHKNA-TRIEYVAGNRAVS 233 (241)
T ss_dssp TTTCCCSSCCCCCSSCCCEEEETT----TEEEECCSCCCSBSGGGCCEEEEEEEEETTE-EEEEEEEGGGGC-
T ss_pred HHhcChhhcCCccCCcEEEEEECC----eEEEcCCCCCcCCHhhcCCEEEEEEeccCCc-EEEEEEECHHHHh
Confidence 32222 233667899999999 9999999999999999999999999987655 6999999999864
No 2
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=8.1e-35 Score=223.40 Aligned_cols=123 Identities=22% Similarity=0.209 Sum_probs=111.1
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhCC--eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhh
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLTC--TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRA 78 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~~--~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~ 78 (158)
||+++|++|||+|||++||+++||. +...|+++.|+++|+||+.+++ ++++ +++||+.||++|++++|+..
T Consensus 91 rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~-lt~e-l~~IE~~vn~~I~~~~pv~~----- 163 (216)
T 2e1b_A 91 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKY-KEQIISLFNKYVDEGGEVKI----- 163 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GGGG-HHHHHHHHHHHHHHCCBEEE-----
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC-CCHH-HHHHHHHHHHHHhcCCCEEE-----
Confidence 6999999999999999999999995 5778999999999999998766 8775 99999999999999999752
Q ss_pred cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEe
Q psy6340 79 SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT 136 (158)
Q Consensus 79 ~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~ 136 (158)
...+ .+|+|+||+ ++.+|||||||+||++||.|+|++.+++++|++||+|..
T Consensus 164 -~~~~-~vRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~l 215 (216)
T 2e1b_A 164 -WWEG-DRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMWL 215 (216)
T ss_dssp -EESS-SCEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEEE
T ss_pred -EEcC-CEEEEEECC----EEEECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEEE
Confidence 1122 299999999 999999999999999999999999999999999999974
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=4.3e-34 Score=249.74 Aligned_cols=133 Identities=26% Similarity=0.401 Sum_probs=120.9
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++||+++|| .+++.|+++.++++|+||+.+.+ ++++++++||+.||++|++++|+.
T Consensus 605 rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~-lt~edL~~IE~~vNeiI~~nlpV~~~~~s~e 683 (752)
T 2zze_A 605 RRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR-ISEEELXEIEMLANRIVMEDRXVTWEWLPRT 683 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBEEEEEEEHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCccceeecCHH
Confidence 699999999999999999999999 78899999999999999998777 999999999999999999999853
Q ss_pred HHHHh-----h--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCH
Q psy6340 73 RRHMR-----A--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 138 (158)
Q Consensus 73 ~~~~~-----~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~ 138 (158)
+|... + ++.|.+.+|+|+||+ +++++||||||+||++||.|+|++++++++|++||++++|.
T Consensus 684 EA~~~~~~~lf~~ge~ygd~VRVV~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 684 TAEQXYGFRLYQGGVVPGREIRVVXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp HHHHHHCGGGCSSCCCCSSEEEEEEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred HHhhcchhhhhcCCCCCCCeEEEEEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 34332 2 345667899999999 99999999999999999999999999999999999999984
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.98 E-value=6.4e-32 Score=235.93 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=118.7
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340 1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD------- 72 (158)
Q Consensus 1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~------- 72 (158)
||+.+|++|||+|||++|++++|| .+++.|+.+.++++|+||..+.+ ++++++.+||+.||++|++++|+.
T Consensus 592 rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~-lT~edL~~IE~~vNeiI~~nlpV~~~~~s~e 670 (739)
T 2ztg_A 592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRR-PSEEEIKEIEMLANREILANKPIKWEWMDRI 670 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSC-CCHHHHHHHHHHHHHHHHTTCBEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 699999999999999999999999 78899999999999999998766 999999999999999999999853
Q ss_pred HHHHhh-------cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCH
Q psy6340 73 RRHMRA-------SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 138 (158)
Q Consensus 73 ~~~~~~-------~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~ 138 (158)
+|...+ +..+.+.+|||+||+ +.++||||||+||++||.|+|++.+++++|++||++++|+
T Consensus 671 EA~~~~~l~L~~~~~~~~d~VRVV~IGd-----~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 671 EAERKFGFRLYQGGVPPGRKIRVVQVGD-----DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp HHHHHHCGGGGTTCCCCSSEEEEEEETT-----EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESC
T ss_pred HHHHhCCHhhhcCCCCCCCeEEEEEECC-----eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEecC
Confidence 343322 233456799999999 6999999999999999999999999999999999999995
No 5
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.97 E-value=2.1e-30 Score=189.53 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=107.9
Q ss_pred hHHHHhHHHHHHHHHHHHHhC-Cee-ecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HH
Q psy6340 4 GCMRAHTTSHLLNAALRRVLT-CTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RR 74 (158)
Q Consensus 4 ~~~~~HTa~HlL~~al~~~~~-~~~-~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~ 74 (158)
.+|++|||+|||++|++++|| ... ..|..+.++++++||+.+.. ++++++.+||+.||++|++++|+. +|
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA 82 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 579999999999999999998 454 44557776689999987666 999999999999999999999863 56
Q ss_pred HHhhccc------CC---CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-cCCCeEEEEEEeCH
Q psy6340 75 HMRASEI------YP---DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-YNHGVRSIKCLTGE 138 (158)
Q Consensus 75 ~~~~~~~------~~---~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-~~~~~~Ri~~~~g~ 138 (158)
..++++. +| +.+|+|+||+ +|.++||||||+||++||.|+|++.++ .+++..||+|.++|
T Consensus 83 ~~~f~~~~~~~~~~~~~~~~vrv~~ig~----~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HHhhCccccccccCCCCCCeEEEEEECC----eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 5555431 24 3599999999 999999999999999999999999886 34455699999886
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.97 E-value=3.5e-30 Score=198.43 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=107.5
Q ss_pred hHHHHhHHHHHHHHHHHHHhCCee-ecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHH
Q psy6340 4 GCMRAHTTSHLLNAALRRVLTCTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRH 75 (158)
Q Consensus 4 ~~~~~HTa~HlL~~al~~~~~~~~-~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~ 75 (158)
..|.+|||+|||++|++++||... ..|.+ .+++||+||+.+.+ ++++++.+||+.||++|++++|+ ++|.
T Consensus 68 ~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~-~~~g~y~d~~~~~~-~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~ 145 (224)
T 1tke_A 68 LEIIRHSCAHLLGHAIKQLWPHTKMAIGPV-IDNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEAR 145 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEECCCCE-ETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEECCc-cCCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHH
Confidence 579999999999999999997433 34554 48999999998766 99999999999999999999975 3444
Q ss_pred Hhhc------------c-c-CCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEE
Q psy6340 76 MRAS------------E-I-YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKC 134 (158)
Q Consensus 76 ~~~~------------~-~-~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~ 134 (158)
.++. + . +.+.+|+|++|+ + .++|+||||+||++||.|+|++.++ .++++||||+
T Consensus 146 ~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~----~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg 220 (224)
T 1tke_A 146 ETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT----E-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred HHHHHcCCchHHHHhccccCCCCeeEEEEeCC----E-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEE
Confidence 4332 1 2 334699999999 7 7999999999999999999999987 3888999999
Q ss_pred EeCH
Q psy6340 135 LTGE 138 (158)
Q Consensus 135 ~~g~ 138 (158)
++++
T Consensus 221 ~a~~ 224 (224)
T 1tke_A 221 TAWA 224 (224)
T ss_dssp EECC
T ss_pred eccC
Confidence 9974
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.94 E-value=6e-27 Score=203.96 Aligned_cols=144 Identities=19% Similarity=0.308 Sum_probs=120.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHH
Q psy6340 3 LGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRR 74 (158)
Q Consensus 3 ~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~ 74 (158)
-.+|++|||+|||++|++++|| ...+.|+.+ +++||+||+.+.+ ++++++.+||+.||++|++++|+ ++|
T Consensus 69 g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~-~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA 146 (645)
T 1nyr_A 69 ALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQN-ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEA 146 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSC-CCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHH
Confidence 3689999999999999999998 666788877 9999999997766 99999999999999999999975 356
Q ss_pred HHhhc-ccC--------C--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEEEe
Q psy6340 75 HMRAS-EIY--------P--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLT 136 (158)
Q Consensus 75 ~~~~~-~~~--------~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~~~ 136 (158)
..+|+ +.| | +.+|+|++|+ + .++|+||||+||++||.|+|+++++ .+++++||++++
T Consensus 147 ~~~f~~~~yk~~li~~~~~~~~vrv~~~g~----~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~ 221 (645)
T 1nyr_A 147 KELFSNDEYKLELIDAIPEDENVTLYSQGD----F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTA 221 (645)
T ss_dssp HHHCSSCHHHHHHHCCCSSSCCCEEEEETT----E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEE
T ss_pred HHHHhhCcchHHHhhcCCCCCeeEEEEECC----E-EEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHh
Confidence 66665 222 2 3699999999 8 8999999999999999999999974 478899999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy6340 137 GESSKAAVENGKQLSAAV 154 (158)
Q Consensus 137 g~~a~~~~~~~~~~~~~~ 154 (158)
++.. +.+.+....++|.
T Consensus 222 ~~~~-~~l~~~~~~l~ea 238 (645)
T 1nyr_A 222 FFDK-KELKAHLQMLEER 238 (645)
T ss_dssp ESSH-HHHHHHHHHHHHH
T ss_pred cCCH-HHhhhhhhhhhhh
Confidence 9875 3455555555543
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.94 E-value=7.6e-26 Score=196.93 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=115.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHhCC-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHH
Q psy6340 3 LGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRR 74 (158)
Q Consensus 3 ~~~~~~HTa~HlL~~al~~~~~~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~ 74 (158)
-..|.+|||+|||++|++++||. ..+.|+.+ +++||+||+.+.+ ++++|+.+||+.||++|+++.|+ ++|
T Consensus 67 ~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i-~~gfy~Df~~~~~-~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA 144 (642)
T 1qf6_A 67 GLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVI-DNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA 144 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEECCCCEE-TTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEECCcc-CCeeEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHH
Confidence 35799999999999999999973 34677877 5889999998777 99999999999999999999975 344
Q ss_pred HHhhc---c---------cCC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEE
Q psy6340 75 HMRAS---E---------IYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIK 133 (158)
Q Consensus 75 ~~~~~---~---------~~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~ 133 (158)
..++. + ..| +.+|+|++|+ + .++|+||||+||++||.|+|+++++ .+++++|+|
T Consensus 145 ~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~----~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~ 219 (642)
T 1qf6_A 145 RETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIY 219 (642)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT----E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEE
T ss_pred HHHhhhhCCcchhhhhhcccCCCCceEEEEECC----E-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeee
Confidence 44332 1 123 3699999999 7 7999999999999999999999988 267789999
Q ss_pred EEeCHHHHHHHHHHHHHHHH
Q psy6340 134 CLTGESSKAAVENGKQLSAA 153 (158)
Q Consensus 134 ~~~g~~a~~~~~~~~~~~~~ 153 (158)
+++.+.. +.+....+.+++
T Consensus 220 g~~~~~~-~~l~~~~~~~ee 238 (642)
T 1qf6_A 220 GTAWADK-KALNAYLQRLEE 238 (642)
T ss_dssp EEECSSH-HHHHHHHHHHHH
T ss_pred ccccCch-hHHhhhhhhhhc
Confidence 9998764 444444444443
No 9
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=71.89 E-value=14 Score=26.33 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHHHHHhCCe---eecceeeeCCceEEEEecCCCCCCHHHHHH-HHHHHHHHH
Q psy6340 6 MRAHTTSHLLNAALRRVLTCT---YQKSCRVFSDECALDFSVYGETLSVDSVAA-VEKYINDVI 65 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~~~---~~~g~~~~~~~~~~df~~~~~~~~~~~l~~-iE~~~n~~I 65 (158)
.-.||.+||+...++.-...+ -.-|+. .|||+=+.. . .+.+++.. +++.++.+.
T Consensus 52 ~~iHTlEHL~A~~lRnh~~~iId~sPMGCr---TGFYlil~G--~-~~~~~v~~~~~~~l~~Il 109 (160)
T 1j6x_A 52 PSLHSLEHLVAEIIRNHANYVVDWSPMGCQ---TGFYLTVLN--H-DNYTEILEVLEKTMQDVL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCSCEEEEEECTTS---SEEEEEEES--C-CCHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhhCCCCeEEECCcCcc---hhcEEEEeC--C-CCHHHHHHHHHHHHHHHH
Confidence 457999999999999865322 222332 467765543 3 56776655 555565555
No 10
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=68.38 E-value=19 Score=25.71 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHHHHhCCe---eecceeeeCCceEEEEecCCCCCCHHHHH-HHHHHHHHHHH
Q psy6340 6 MRAHTTSHLLNAALRRVLTCT---YQKSCRVFSDECALDFSVYGETLSVDSVA-AVEKYINDVIA 66 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~~~---~~~g~~~~~~~~~~df~~~~~~~~~~~l~-~iE~~~n~~I~ 66 (158)
.-.||.+||+...++.-...+ -.-|+. .|||+=+. +. .+.+++. .+++.++.+..
T Consensus 54 ~~iHTlEHL~A~~lRnh~~~iId~sPMGCr---TGFYlil~--G~-~~~~~v~~~~~~~l~~Il~ 112 (166)
T 1vje_A 54 AAIHTLEHLLAGYMRDHLEGVVDVSPMGAR---TGMYMAVI--GE-PDEQGVMKAFEAALKDTAG 112 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEECTTS---SEEEEEEE--SS-CCHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhcCCCCeEEECCcccc---cccEEEEe--CC-CCHHHHHHHHHHHHHHHHh
Confidence 457999999999999865422 222332 46776554 33 5666654 45666666665
No 11
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=51.80 E-value=51 Score=23.27 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHHhCC---eeecceeeeC----CceEEEEecCCCCCCHHHHHH-HHHHHHHHH
Q psy6340 6 MRAHTTSHLLNAALRRVLTC---TYQKSCRVFS----DECALDFSVYGETLSVDSVAA-VEKYINDVI 65 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~~---~~~~g~~~~~----~~~~~df~~~~~~~~~~~l~~-iE~~~n~~I 65 (158)
.-.||.+||+...++.-... ... -+++| .|||+=+.. . .+.+++.. +++.++.+.
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~~i--Id~sPMGCrTGFYl~l~G--~-~~~~~v~~~~~~~l~~il 113 (157)
T 1j98_A 51 DTIHTLEHLLAFTIRSHAEKYDHFDI--IDISPMGCQTGYYLVVSG--E-TTSAEIVDLLEDTMKEAV 113 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEE--EEEEECTTSSEEEEEEEE--C-CCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcCccccCCCCE--EEeCCcCcccccEEEEeC--C-CCHHHHHHHHHHHHHHHH
Confidence 45799999999999976531 122 23334 356665443 3 56776655 566666555
No 12
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=34.30 E-value=1.3e+02 Score=21.60 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHhHHHHHHHHHHHHHhC--CeeecceeeeC----CceEEEEecCCCCCCHHHHHH-HHHHHHHHHH
Q psy6340 6 MRAHTTSHLLNAALRRVLT--CTYQKSCRVFS----DECALDFSVYGETLSVDSVAA-VEKYINDVIA 66 (158)
Q Consensus 6 ~~~HTa~HlL~~al~~~~~--~~~~~g~~~~~----~~~~~df~~~~~~~~~~~l~~-iE~~~n~~I~ 66 (158)
.-.||.+||+...++.-.. .... -+++| .|||+=+. +. .+.+++.. +++.++.+..
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~i--Id~sPMGCrTGFYlil~--G~-~~~~~v~~~~~~~l~~Il~ 113 (175)
T 1j6w_A 51 KGIHTLEHLFAGFMRDHLNGDSIEI--IDISPMGCRTGFYMSLI--GT-PNEQKVSEAWLASMQDVLG 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHCBTTBEE--EEEEECTTSSEEEEEEE--SC-CCHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhhCccCCCCeE--EEeCCcCcccccEEEEe--CC-CCHHHHHHHHHHHHHHHHh
Confidence 4579999999999998653 1222 23334 35665444 33 56666654 5666666663
Done!