RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6340
         (158 letters)



>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
           domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 129

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 11/132 (8%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYI 61
           R   MR HT  HLL   L  VL     +            + +            +    
Sbjct: 5   RYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQIISLF 64

Query: 62  NDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIG 121
           N  + +  +V             D     I D        PC GTHV +   I     + 
Sbjct: 65  NKYVDEGGEVKIWWEG-------DRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLK 113

Query: 122 YKSYNHGVRSIK 133
             S   G + ++
Sbjct: 114 RSSIGRGKQRLE 125


>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 151

 Score = 59.5 bits (143), Expect = 1e-12
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 6   MRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIND 63
           +R H+  H++  A+ +VL     +  S  V  ++  L      +    +           
Sbjct: 6   VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65

Query: 64  VIADQ------VQVDRRHMRASEIYPDDVILIDISDKENVI-----SREPCCGTHVFNTG 112
           V  +       +  +       E   D   + +      V+     +   C   H   TG
Sbjct: 66  VKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTG 125

Query: 113 HIESCTVIGYK-SYNHGVRSI 132
            I    +   +   + G+  I
Sbjct: 126 EIGPIKIRKVRFRKSKGLLEI 146


>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
           second 'additional' domain {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 179

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 16/162 (9%)

Query: 9   HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 68
           H+T+HL+  A++R+          V       DF +  + +S D    +EK +  ++ + 
Sbjct: 13  HSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDID-QNISSDDFEQIEKTMKQIVNEN 71

Query: 69  VQVDRRHM---RASEIY---PDDVILIDISDKENVISR-------EPCCGTHVFNTGHIE 115
           ++++R+ +    A E++      + LID   ++  ++        + C G HV +T  I+
Sbjct: 72  MKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIK 131

Query: 116 SCTVIGYKS-YNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
              ++     Y  G  + K L      A   + K+L A ++ 
Sbjct: 132 EFKLLSTAGAYWRGDSNNKMLQRIYGTAF-FDKKELKAHLQM 172


>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
           second 'additional' domain {Escherichia coli [TaxId:
           562]}
          Length = 162

 Score = 32.9 bits (74), Expect = 0.008
 Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 9   HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 68
           H+ +HLL  A++++   T      V  +    D  +       D  A  ++       + 
Sbjct: 11  HSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNY 70

Query: 69  VQVDRRHMR-------ASEIYPDDVILIDISDKENVISREPCCGTHV-FNTGHIESCTVI 120
             + ++          A+      V ++D +   +          +V    G        
Sbjct: 71  DVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRF 130

Query: 121 G 121
            
Sbjct: 131 C 131


>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37
           [TaxId: 320840]}
          Length = 133

 Score = 24.2 bits (52), Expect = 7.1
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 8/50 (16%)

Query: 80  EIYPDDVILIDISDKENVISREPC-CGTHVFNTGHI-------ESCTVIG 121
           EIY  D++     +   V   +     T  +N G+            V+G
Sbjct: 69  EIYESDIVRNLYGELYVVEWLDGSFVLTEFYNGGYDHYIIDSSTEYEVLG 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,390
Number of extensions: 23853
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 7
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)