Query psy6341
Match_columns 465
No_of_seqs 373 out of 2593
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:56:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0676|consensus 100.0 4.3E-35 9.3E-40 299.3 8.0 182 2-213 184-371 (372)
2 PTZ00452 actin; Provisional 100.0 2.2E-33 4.7E-38 291.0 10.6 175 2-203 187-367 (375)
3 PTZ00466 actin-like protein; P 100.0 1.2E-32 2.6E-37 285.9 10.9 174 2-203 193-372 (380)
4 PTZ00004 actin-2; Provisional 100.0 3.1E-32 6.7E-37 282.6 10.2 176 2-203 188-370 (378)
5 PTZ00281 actin; Provisional 100.0 3.1E-32 6.8E-37 282.4 9.5 175 2-203 188-368 (376)
6 KOG0680|consensus 100.0 5.5E-32 1.2E-36 265.9 8.3 187 2-203 191-391 (400)
7 PTZ00280 Actin-related protein 100.0 5.6E-31 1.2E-35 276.2 10.8 192 2-203 199-402 (414)
8 KOG0677|consensus 100.0 1.9E-29 4.1E-34 242.1 7.1 186 2-203 188-380 (389)
9 KOG0677|consensus 99.9 2.4E-27 5.1E-32 227.7 9.6 152 212-388 115-305 (389)
10 smart00268 ACTIN Actin. ACTIN 99.9 1E-26 2.2E-31 240.1 10.1 176 2-203 182-365 (373)
11 PF00022 Actin: Actin; InterP 99.9 1.6E-26 3.5E-31 239.6 4.6 173 2-203 181-385 (393)
12 cd00012 ACTIN Actin; An ubiqui 99.9 2.4E-25 5.2E-30 229.8 10.3 178 2-203 182-365 (371)
13 PTZ00452 actin; Provisional 99.9 7.9E-25 1.7E-29 227.1 11.8 154 212-390 114-306 (375)
14 KOG0676|consensus 99.9 4.8E-25 1E-29 225.6 8.6 153 211-390 112-303 (372)
15 PTZ00466 actin-like protein; P 99.9 4E-24 8.7E-29 222.2 11.7 155 211-390 119-311 (380)
16 PTZ00281 actin; Provisional 99.9 8.9E-24 1.9E-28 219.3 10.8 155 211-390 114-307 (376)
17 KOG0679|consensus 99.9 5E-25 1.1E-29 221.4 1.2 154 21-204 245-418 (426)
18 KOG0680|consensus 99.9 9.2E-24 2E-28 208.1 9.7 158 215-389 110-329 (400)
19 COG5277 Actin and related prot 99.9 1.8E-23 3.9E-28 220.2 7.4 176 2-203 195-436 (444)
20 PTZ00004 actin-2; Provisional 99.9 1E-22 2.2E-27 211.4 11.6 153 212-389 115-308 (378)
21 KOG0678|consensus 99.9 1.4E-22 3.1E-27 200.0 3.2 190 3-202 202-401 (415)
22 PTZ00280 Actin-related protein 99.9 3.5E-21 7.6E-26 202.2 13.2 161 212-389 116-324 (414)
23 smart00268 ACTIN Actin. ACTIN 99.8 1.6E-19 3.5E-24 186.5 11.4 153 212-389 109-303 (373)
24 cd00012 ACTIN Actin; An ubiqui 99.8 7E-19 1.5E-23 181.7 11.9 154 212-390 109-302 (371)
25 PF00022 Actin: Actin; InterP 99.8 2.7E-19 5.9E-24 185.6 5.8 154 211-389 107-322 (393)
26 KOG0678|consensus 99.8 4.3E-20 9.3E-25 182.5 -0.7 130 211-377 119-254 (415)
27 COG5277 Actin and related prot 99.6 4.3E-16 9.3E-21 164.5 10.6 95 211-313 119-255 (444)
28 KOG0681|consensus 99.6 5.8E-16 1.3E-20 161.6 9.0 127 203-338 115-272 (645)
29 KOG0679|consensus 99.6 3.2E-15 6.8E-20 151.1 5.5 63 201-271 103-171 (426)
30 KOG0681|consensus 99.3 3.9E-13 8.5E-18 140.7 0.9 116 76-203 511-632 (645)
31 PRK13930 rod shape-determining 98.7 4.4E-08 9.4E-13 99.9 9.8 88 212-305 113-223 (335)
32 TIGR00904 mreB cell shape dete 98.7 4.5E-08 9.8E-13 100.1 9.3 85 214-304 113-220 (333)
33 PRK13927 rod shape-determining 98.6 8.9E-08 1.9E-12 97.7 8.3 90 208-303 105-217 (334)
34 PRK13929 rod-share determining 98.6 7E-08 1.5E-12 99.0 6.7 86 213-305 113-221 (335)
35 PRK13929 rod-share determining 98.6 1.9E-08 4.2E-13 103.2 2.5 113 2-142 187-303 (335)
36 PRK13930 rod shape-determining 98.5 2.8E-08 6.1E-13 101.3 0.5 116 2-142 189-305 (335)
37 PRK13927 rod shape-determining 98.4 8.7E-08 1.9E-12 97.8 0.3 115 3-142 186-301 (334)
38 TIGR00904 mreB cell shape dete 98.3 1.6E-07 3.5E-12 96.0 1.9 116 3-142 188-304 (333)
39 PRK13928 rod shape-determining 98.2 4.9E-06 1.1E-10 85.3 8.0 59 210-271 106-164 (336)
40 KOG0797|consensus 98.0 9.4E-07 2E-11 93.0 -0.5 99 97-202 505-606 (618)
41 PRK13928 rod shape-determining 97.7 1.1E-05 2.4E-10 82.7 0.6 66 76-143 235-301 (336)
42 KOG0797|consensus 97.3 0.00048 1E-08 73.1 7.1 117 214-338 243-399 (618)
43 PF06723 MreB_Mbl: MreB/Mbl pr 96.7 0.002 4.4E-08 66.2 5.2 148 217-389 112-285 (326)
44 PF06723 MreB_Mbl: MreB/Mbl pr 96.1 0.0019 4E-08 66.5 1.0 100 21-142 198-298 (326)
45 PRK09472 ftsA cell division pr 93.8 0.34 7.3E-06 51.5 9.6 54 214-271 168-221 (420)
46 COG0849 ftsA Cell division ATP 93.6 0.61 1.3E-05 49.7 11.1 143 220-389 172-332 (418)
47 TIGR03739 PRTRC_D PRTRC system 93.3 0.14 3E-06 52.3 5.7 68 204-271 108-184 (320)
48 TIGR01174 ftsA cell division p 93.3 0.67 1.4E-05 48.2 10.8 48 221-271 166-213 (371)
49 TIGR02529 EutJ ethanolamine ut 92.8 0.66 1.4E-05 45.5 9.4 43 221-271 83-125 (239)
50 COG1077 MreB Actin-like ATPase 91.2 0.5 1.1E-05 48.4 6.5 78 222-303 124-222 (342)
51 COG1077 MreB Actin-like ATPase 90.4 0.11 2.4E-06 53.1 1.0 65 76-142 243-308 (342)
52 PRK15080 ethanolamine utilizat 89.6 1.9 4E-05 43.0 9.0 44 220-271 109-152 (267)
53 PRK13917 plasmid segregation p 88.4 1.3 2.7E-05 46.0 7.1 47 225-271 151-202 (344)
54 TIGR02529 EutJ ethanolamine ut 88.0 0.34 7.3E-06 47.6 2.4 24 119-142 196-219 (239)
55 TIGR01175 pilM type IV pilus a 85.4 2.5 5.3E-05 43.3 7.3 17 255-271 189-205 (348)
56 PRK15080 ethanolamine utilizat 82.4 0.63 1.4E-05 46.4 1.3 26 117-142 221-246 (267)
57 TIGR01174 ftsA cell division p 76.1 1.7 3.7E-05 45.2 2.2 44 98-143 296-340 (371)
58 PF06406 StbA: StbA protein; 75.5 4.5 9.8E-05 41.3 5.1 45 224-271 137-181 (318)
59 PRK01433 hscA chaperone protei 75.2 14 0.00029 41.4 9.1 53 216-271 158-210 (595)
60 TIGR01991 HscA Fe-S protein as 74.7 20 0.00042 40.1 10.3 51 218-271 148-198 (599)
61 PRK09472 ftsA cell division pr 74.6 1.4 3E-05 46.9 1.1 45 98-142 304-353 (420)
62 PRK05183 hscA chaperone protei 70.4 36 0.00079 38.1 11.1 52 217-271 167-218 (616)
63 PRK13410 molecular chaperone D 67.7 40 0.00086 38.3 10.8 48 221-271 157-204 (668)
64 CHL00094 dnaK heat shock prote 66.9 21 0.00045 40.0 8.3 47 222-271 158-204 (621)
65 PF00012 HSP70: Hsp70 protein; 65.5 31 0.00067 37.9 9.3 60 210-271 146-205 (602)
66 CHL00094 dnaK heat shock prote 65.2 2.6 5.7E-05 47.1 0.8 43 98-142 311-353 (621)
67 PTZ00009 heat shock 70 kDa pro 64.5 67 0.0015 36.3 11.8 52 219-271 160-211 (653)
68 TIGR02350 prok_dnaK chaperone 64.2 65 0.0014 35.8 11.5 49 221-271 152-200 (595)
69 PTZ00186 heat shock 70 kDa pre 57.7 28 0.0006 39.5 7.2 53 216-271 177-229 (657)
70 PF11104 PilM_2: Type IV pilus 56.0 18 0.0004 37.1 5.1 51 221-271 144-197 (340)
71 PRK00290 dnaK molecular chaper 55.8 4.5 9.8E-05 45.2 0.6 42 98-141 309-350 (627)
72 PRK00290 dnaK molecular chaper 54.7 37 0.00081 38.0 7.6 49 220-271 154-202 (627)
73 PLN03184 chloroplast Hsp70; Pr 54.4 39 0.00084 38.4 7.7 50 219-271 192-241 (673)
74 TIGR02350 prok_dnaK chaperone 53.5 4.4 9.5E-05 45.0 0.0 62 77-142 288-349 (595)
75 PRK13859 type IV secretion sys 53.2 8.1 0.00017 29.0 1.3 31 410-440 13-43 (55)
76 TIGR02261 benz_CoA_red_D benzo 53.0 5.7 0.00012 39.8 0.7 25 119-143 213-237 (262)
77 PF11104 PilM_2: Type IV pilus 52.3 10 0.00022 38.9 2.5 28 116-143 273-300 (340)
78 PTZ00400 DnaK-type molecular c 50.8 8.9 0.00019 43.3 1.9 62 77-142 331-392 (663)
79 PRK11678 putative chaperone; P 50.6 9.4 0.0002 41.1 2.0 59 76-141 365-423 (450)
80 TIGR01175 pilM type IV pilus a 47.3 14 0.0003 37.7 2.5 27 117-143 282-308 (348)
81 PF01869 BcrAD_BadFG: BadF/Bad 43.6 10 0.00022 37.5 0.8 48 121-183 224-271 (271)
82 PRK13411 molecular chaperone D 42.3 15 0.00032 41.5 2.0 62 77-142 291-352 (653)
83 PF08841 DDR: Diol dehydratase 41.6 1.6E+02 0.0036 30.1 8.9 53 215-271 98-151 (332)
84 COG0443 DnaK Molecular chapero 39.5 56 0.0012 36.5 5.9 49 220-271 141-189 (579)
85 PLN03184 chloroplast Hsp70; Pr 36.7 21 0.00046 40.5 2.1 43 98-142 348-390 (673)
86 PRK01433 hscA chaperone protei 35.6 26 0.00057 39.1 2.6 24 118-141 309-332 (595)
87 TIGR01991 HscA Fe-S protein as 35.5 24 0.00053 39.4 2.3 43 98-142 295-337 (599)
88 PHA03141 helicase-primase prim 34.1 27 0.00059 29.8 1.8 20 417-436 30-53 (101)
89 PF15462 Barttin: Bartter synd 32.2 1.2E+02 0.0025 29.1 5.8 78 370-459 126-219 (224)
90 PRK05183 hscA chaperone protei 32.0 30 0.00066 38.8 2.3 43 98-142 311-353 (616)
91 PF07935 SSV1_ORF_D-335: ORF D 31.6 31 0.00068 27.7 1.7 14 399-412 59-72 (72)
92 PTZ00186 heat shock 70 kDa pre 27.0 40 0.00087 38.2 2.2 43 98-142 336-378 (657)
93 TIGR03192 benz_CoA_bzdQ benzoy 26.4 22 0.00048 36.2 0.1 44 97-142 221-264 (293)
94 PTZ00009 heat shock 70 kDa pro 26.2 40 0.00087 38.0 2.1 59 76-141 295-356 (653)
95 PF00012 HSP70: Hsp70 protein; 26.0 43 0.00093 36.8 2.2 62 77-142 292-353 (602)
96 PRK13410 molecular chaperone D 25.4 42 0.0009 38.1 2.0 43 98-142 311-353 (668)
97 TIGR03286 methan_mark_15 putat 24.5 32 0.0007 36.6 0.8 49 116-184 354-402 (404)
98 COG4972 PilM Tfp pilus assembl 23.4 3.5E+02 0.0075 28.3 7.9 16 256-271 195-210 (354)
99 COG0849 ftsA Cell division ATP 23.0 48 0.001 35.5 1.7 24 115-138 318-341 (418)
100 TIGR02259 benz_CoA_red_A benzo 22.9 44 0.00095 35.7 1.4 53 116-183 380-432 (432)
101 TIGR00241 CoA_E_activ CoA-subs 22.8 60 0.0013 31.7 2.3 23 120-142 206-228 (248)
102 PF01968 Hydantoinase_A: Hydan 22.6 65 0.0014 32.5 2.6 20 252-271 75-94 (290)
103 COG1548 Predicted transcriptio 20.7 63 0.0014 32.6 1.9 18 254-271 130-147 (330)
104 COG4820 EutJ Ethanolamine util 20.3 76 0.0016 31.0 2.3 43 221-271 115-157 (277)
No 1
>KOG0676|consensus
Probab=100.00 E-value=4.3e-35 Score=299.28 Aligned_cols=182 Identities=24% Similarity=0.392 Sum_probs=160.6
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++|+++.+..++++|++|||++|||++|+.+|+.. .........+|+|| || +.++++
T Consensus 184 ~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~~~~~l~~~y~lP------Dg--------~~i~i~ 248 (372)
T KOG0676|consen 184 DYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-ANTSSSLESSYELP------DG--------QKITIG 248 (372)
T ss_pred HHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc-ccccccccccccCC------CC--------CEEecC
Confidence 5899999999999999999999999999999999999999876 32334556779999 89 899999
Q ss_pred ccccc-cc-CCCCCC----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~~----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
+|||+ || +|+|+. ..||++++++||.+||+|+|+.||+||||+||+|++|||.+||++||+.+.|
T Consensus 249 ~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P--------- 319 (372)
T KOG0676|consen 249 NERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAP--------- 319 (372)
T ss_pred CcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCC---------
Confidence 99999 88 344331 7899999999999999999999999999999999999999999999999876
Q ss_pred cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCCCCCccccccc
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGRGRPKKRWKDC 213 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~Grp~~rW~d~ 213 (465)
+..+++++++|+| .+++|+||||+|++++|+++++++++|.+.| |...|+.|
T Consensus 320 --~~~~ikv~~pp~r-~~s~WlGgSIlaslstfq~~witk~eY~e~g---~~~~~rk~ 371 (372)
T KOG0676|consen 320 --STIKIKVIAPPER-KYSAWLGGSILASLSTFQQMWITKEEYEEHG---PSIIHRKC 371 (372)
T ss_pred --CCcceEEecCccc-ccceecCceeEeecchHhhccccHHHHhhhC---Cceeeecc
Confidence 3567999999999 8999999999999999999999999998777 35556544
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.2e-33 Score=291.00 Aligned_cols=175 Identities=21% Similarity=0.310 Sum_probs=155.0
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++|+++.+..+.+++++|||++|||+.|+.+++..... .+...+.|+|| || +.|.++
T Consensus 187 ~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~-~~~~~~~y~LP------Dg--------~~i~l~ 251 (375)
T PTZ00452 187 DYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKE-SNSQDSPYKLP------DG--------NILTIK 251 (375)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhc-cCCcCceEECC------CC--------CEEEee
Confidence 6999999999999987778899999999999999999888764332 23345789999 99 999999
Q ss_pred ccccc-cc-CCCCCC----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~~----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
+|||. || ||+|+. ..||+++|++||++||+|+|+.|++||||+||+|+||||.+||++||+.++|.
T Consensus 252 ~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~-------- 323 (375)
T PTZ00452 252 SQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS-------- 323 (375)
T ss_pred hHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC--------
Confidence 99999 88 455541 57999999999999999999999999999999999999999999999998763
Q ss_pred cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
..+++++++++| ++++|+||||+|+++.|+..+++|++|.+.|.
T Consensus 324 ---~~~v~v~~~~~r-~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~ 367 (375)
T PTZ00452 324 ---QLKIQVAAPPDR-RFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGP 367 (375)
T ss_pred ---CceeEEecCCCc-ceeEEECchhhcCccchhhhEeEHHHHhccCc
Confidence 457888888888 99999999999999999999999999998875
No 3
>PTZ00466 actin-like protein; Provisional
Probab=99.98 E-value=1.2e-32 Score=285.87 Aligned_cols=174 Identities=22% Similarity=0.264 Sum_probs=154.0
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++|+.+.+..+.+++++|||++|||+.|+.+++.... .......|+|| || +.|.++
T Consensus 193 ~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~--~~~~~~~y~LP------dg--------~~i~l~ 256 (380)
T PTZ00466 193 TYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE--KALTTLPYILP------DG--------SQILIG 256 (380)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc--ccccceeEECC------CC--------cEEEEc
Confidence 699999999999888777889999999999999999988875432 22345789999 99 999999
Q ss_pred ccccc-cc-CCCCC----CCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPD----FTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~----~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
.|||+ || ||+|+ ...||+++|.+||++||.|+|+.||+||||+||+|+||||.+||++||++++|.
T Consensus 257 ~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~-------- 328 (380)
T PTZ00466 257 SERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK-------- 328 (380)
T ss_pred hHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC--------
Confidence 99999 88 45554 167999999999999999999999999999999999999999999999998763
Q ss_pred cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
..++++++.++| ++++|+||||+|+++.|+..+++|++|.+.|.
T Consensus 329 ---~~~v~v~~~~~r-~~~aW~GgSilasl~~f~~~~itk~eYeE~G~ 372 (380)
T PTZ00466 329 ---DITIRISAPPER-KFSTFIGGSILASLATFKKIWISKQEFDEYGS 372 (380)
T ss_pred ---CceEEEecCCCC-ceeEEECchhhcCccchhhhEeEHHHHhhhCc
Confidence 456788888888 99999999999999999999999999988775
No 4
>PTZ00004 actin-2; Provisional
Probab=99.97 E-value=3.1e-32 Score=282.57 Aligned_cols=176 Identities=23% Similarity=0.378 Sum_probs=154.8
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++++.+.+..+.+++++|||++|||+.|+.+++.......+...+.|+|| || +.|+++
T Consensus 188 ~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP------dg--------~~i~l~ 253 (378)
T PTZ00004 188 EYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP------DG--------TIITVG 253 (378)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC------CC--------CEEEEc
Confidence 6999999999998887777899999999999999999988764332222346789999 89 999999
Q ss_pred ccccc-cc-CCCCCC-----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhcc
Q psy6341 82 FKSFL-FS-FSNPDF-----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSET 154 (465)
Q Consensus 82 ~Erf~-PE-l~~~~~-----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~ 154 (465)
.|||. || ||+|+. ..||+++|.+||.+||.|+|+.|++||||+||+|+||||.+||++||+.++|.
T Consensus 254 ~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~------- 326 (378)
T PTZ00004 254 SERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPS------- 326 (378)
T ss_pred HHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCC-------
Confidence 99999 99 566641 57999999999999999999999999999999999999999999999998773
Q ss_pred ccCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 155 LSGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 155 ~~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
..++++.+.+++ ++++|+||||+|+++.|+..+++|++|.+.|.
T Consensus 327 ----~~~~~v~~~~~~-~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~ 370 (378)
T PTZ00004 327 ----TMKIKVVAPPER-KYSVWIGGSILSSLPTFQQMWVTKEEYDESGP 370 (378)
T ss_pred ----CccEEEecCCCC-ceeEEECcccccCccchhhhEeEHHHHhhhCc
Confidence 346777877877 99999999999999999999999999988875
No 5
>PTZ00281 actin; Provisional
Probab=99.97 E-value=3.1e-32 Score=282.40 Aligned_cols=175 Identities=21% Similarity=0.340 Sum_probs=154.6
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++++++.+..+.+++++|||++|||+.|+..+++.... .....+.|+|| || +.|+++
T Consensus 188 ~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~-~~~~~~~y~LP------dg--------~~i~i~ 252 (376)
T PTZ00281 188 DYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAAS-SSALEKSYELP------DG--------QVITIG 252 (376)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhc-CcccceeEECC------CC--------CEEEee
Confidence 6999999999999877778899999999999999999888764322 23346789999 89 999999
Q ss_pred ccccc-cc-CCCCC----CCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPD----FTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~----~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
.|||. || ||+|+ ...||+++|++||.+||.|+|+.||+||||+||+|+||||.+||++||+.++|.
T Consensus 253 ~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~-------- 324 (376)
T PTZ00281 253 NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPS-------- 324 (376)
T ss_pred HHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCC--------
Confidence 99999 88 56553 157999999999999999999999999999999999999999999999998763
Q ss_pred cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
..+++++++++| ++++|+||||+|+++.|+..+++|++|.+.|.
T Consensus 325 ---~~~v~v~~~~~r-~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~ 368 (376)
T PTZ00281 325 ---TMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKEEYDESGP 368 (376)
T ss_pred ---CcceEEecCCCC-ceeEEECcccccCcccHhhceeeHHHHhhhCc
Confidence 356888888887 99999999999999999999999999988774
No 6
>KOG0680|consensus
Probab=99.97 E-value=5.5e-32 Score=265.85 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=161.6
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCC--CCcceeeEecCCCCCC-CCCCCCC-----CC
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDAD--PGKWMRNLFYSPTSWK-KSPSDRP-----SI 73 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~--~~~~~~~y~LP~~~~~-~DG~~~~-----~~ 73 (465)
++|+++|++|++|++ +|..+|++|||.+||||.||.++|..+... .+.....|.|| |+.+ ..|++++ ..
T Consensus 191 n~LKE~iSyR~lNvm--dET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLP-DF~T~k~Gyvr~~~vk~~~ 267 (400)
T KOG0680|consen 191 NLLKETISYRHLNVM--DETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLP-DFSTSKRGYVRNEDVKLPE 267 (400)
T ss_pred HHHHHHhhhhhhccc--chhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEecC-CcccccceeEecCCCCCCC
Confidence 799999999999999 577999999999999999999998655433 45778999999 5554 6677663 23
Q ss_pred CceEEEecccccc-cc-CCCCCC----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhh
Q psy6341 74 PFFTQNFQFKSFL-FS-FSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDA 147 (465)
Q Consensus 74 ~~~~I~l~~Erf~-PE-l~~~~~----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~ 147 (465)
+.|.|+|++|||. || ||+|++ ++||+|+|++||..||.++|+.|+.|||++||+++||||.+||.+||+.++|.
T Consensus 268 d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~ 347 (400)
T KOG0680|consen 268 DEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPA 347 (400)
T ss_pred CcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCc
Confidence 4599999999999 99 466764 79999999999999999999999999999999999999999999999999885
Q ss_pred hhhhhccccCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 148 RLKLSETLSGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 148 ~~~~~~~~~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
.+.++++.+.+. ..-+|-||+.++..+.+...++++++|.+.|.
T Consensus 348 -----------d~~v~V~~p~dp-~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 348 -----------DWEVSVSVPEDP-ITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred -----------cceEEEecCCCc-ceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 345666666555 77799999999999999999999999988775
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.97 E-value=5.6e-31 Score=276.19 Aligned_cols=192 Identities=45% Similarity=0.715 Sum_probs=156.0
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
+||+++|.++++++.+..+.+++++|||++|||+.|+.+++...+..++.....|.+| |..++++ +.|.|+
T Consensus 199 ~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~-d~~~g~~--------~~i~l~ 269 (414)
T PTZ00280 199 NFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAV-NSVTKKP--------YTVDVG 269 (414)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECC-CCCCCCc--------cEEEec
Confidence 6899999999998876667899999999999999999988865432222345678988 2222223 589999
Q ss_pred ccccc-cc-CCCCCC-----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhcc
Q psy6341 82 FKSFL-FS-FSNPDF-----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSET 154 (465)
Q Consensus 82 ~Erf~-PE-l~~~~~-----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~ 154 (465)
.|||+ || ||+|+. ..||+++|.++|++||+|+|++|++||||+||+|+||||.+||++||+.+++..++....
T Consensus 270 ~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~ 349 (414)
T PTZ00280 270 YERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEE 349 (414)
T ss_pred hHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhcccccccccc
Confidence 99999 98 455641 359999999999999999999999999999999999999999999999987643222111
Q ss_pred c-----cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 155 L-----SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 155 ~-----~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
. .+...++++++++.+ ++++|+||||+|+++.|+.++++|++|.+.|.
T Consensus 350 ~~~~~~~~~~~~v~v~~~~~~-~~~~W~GgSilas~~~f~~~~itk~eY~E~G~ 402 (414)
T PTZ00280 350 LSGGKLKPIPIDVNVVSHPRQ-RYAVWYGGSMLASSPEFEKVCHTKAEYDEYGP 402 (414)
T ss_pred ccccccCCCCceEEEecCCcc-ceeEEEChhhcccCcchhhheEEHHHHhccCh
Confidence 1 123567888888877 89999999999999999999999999988875
No 8
>KOG0677|consensus
Probab=99.96 E-value=1.9e-29 Score=242.14 Aligned_cols=186 Identities=21% Similarity=0.258 Sum_probs=154.8
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
.||.+||..|||+|+...|++.|++|||++|||+.|+..|.+.+ .+......+|+|| || .+|.+|
T Consensus 188 ryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLa-lETTvLv~~YtLP------DG--------RvIkvG 252 (389)
T KOG0677|consen 188 RYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLA-LETTVLVESYTLP------DG--------RVIKVG 252 (389)
T ss_pred HHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhh-hhheeeeeeeecC------CC--------cEEEec
Confidence 59999999999999999999999999999999999998885433 3345679999999 99 999999
Q ss_pred ccccc-cc-CCCCC----CCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPD----FTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~----~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
.|||. || ||+|. ...|++++++++|+..|+|+|..||++|||+||+||.||+..||++||+++.-.+.-..+..
T Consensus 253 ~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 99999 77 55553 17899999999999999999999999999999999999999999999998743221111112
Q ss_pred cCccceeeeeecccccceeeeecccccCCc-ccccceEEEeeeecccCC
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDE-SYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl-~~~~~~~vtke~y~k~g~ 203 (465)
....+++++-++|.| ++.+++||+.||+. ..-...|+++++|++.|.
T Consensus 333 ~l~KfkiRIEdPPrR-KhMVflGGAVLA~imkD~d~fW~skqeyqE~G~ 380 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRR-KHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGI 380 (389)
T ss_pred hhhheEEeccCCCcc-ceeEEEchHHHHHHhcCCccceecHHHHHhhhH
Confidence 234677887788877 99999999999974 223356799999998875
No 9
>KOG0677|consensus
Probab=99.94 E-value=2.4e-27 Score=227.74 Aligned_cols=152 Identities=34% Similarity=0.503 Sum_probs=131.7
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
..+|||.|+|||+|||.++|++.||+|++||. |-.||+|||+|.++|||+||
T Consensus 115 kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQ--------GL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdi 186 (389)
T KOG0677|consen 115 KNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQ--------GLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDI 186 (389)
T ss_pred ccHHHHHHHHHHHcCCCeEEehHHHHHHHHHh--------cccceEEEecCCCeeEEeeeecceehhhhhhhccccchhH
Confidence 35799999999999999999999999999999 99999999999999999999
Q ss_pred -----hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc----cccccCCCCC---------CCCeEEeccc
Q psy6341 272 -----SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR----NKVWKQPKLS---------RNDTLIFVPI 333 (465)
Q Consensus 272 -----~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~----~~~~~l~~l~---------~~~eilF~P~ 333 (465)
+||..+++.|+.+++++.|++|||++|||+.|++.|-+.+.. -..|++||.. +.||+||+|.
T Consensus 187 TryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~ 266 (389)
T KOG0677|consen 187 TRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPH 266 (389)
T ss_pred HHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcc
Confidence 788889999999999999999999999999999988776654 3577788765 5599999999
Q ss_pred cccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCC
Q psy6341 334 LLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSA 388 (465)
Q Consensus 334 ~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (465)
++.+ ..+.+|-+...|++. .-|+ . ..+||+ |||||||.
T Consensus 267 Li~VE~~G~aellF~~iQaa----DiD~---------R-~~lYkh---IVLSGGst 305 (389)
T KOG0677|consen 267 LINVEGPGVAELLFNTIQAA----DIDI---------R-SELYKH---IVLSGGST 305 (389)
T ss_pred eeccCCCcHHHHHHHHHHHh----ccch---------H-HHHHhH---eeecCCcc
Confidence 9998 678877777777662 2222 1 457899 99999996
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.93 E-value=1e-26 Score=240.06 Aligned_cols=176 Identities=28% Similarity=0.421 Sum_probs=150.0
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccC--CCCcceeeEecCCCCCCCCCCCCCCCCceEEE
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDA--DPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQN 79 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~--~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~ 79 (465)
+||+++|.+++..+....+.+++++|||++|||+.++.+++..... ........|+|| || +.+.
T Consensus 182 ~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp------dg--------~~~~ 247 (373)
T smart00268 182 DYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP------DG--------NTIK 247 (373)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC------CC--------CEEE
Confidence 5789999887666655567799999999999999999888754321 123346789999 89 9999
Q ss_pred ecccccc-cc-CCCCCC----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhc
Q psy6341 80 FQFKSFL-FS-FSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSE 153 (465)
Q Consensus 80 l~~Erf~-PE-l~~~~~----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~ 153 (465)
++.|||. || ||.|+. ..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+.++|.
T Consensus 248 ~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~------ 321 (373)
T smart00268 248 VGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPK------ 321 (373)
T ss_pred EChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCC------
Confidence 9999999 88 555531 57999999999999999999999999999999999999999999999998763
Q ss_pred cccCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 154 TLSGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 154 ~~~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
..++++...+++ .+++|+|||++|+++.|+..+++|++|++.|.
T Consensus 322 -----~~~v~v~~~~~~-~~~~W~G~silas~~~f~~~~vtk~eY~E~G~ 365 (373)
T smart00268 322 -----KLKVKVIAPPER-KYSVWLGGSILASLSTFEDMWITKKEYEEHGS 365 (373)
T ss_pred -----CceeEEecCCCC-ccceEeCcccccCccchhhhEEEHHHHhhhCc
Confidence 346777777777 89999999999999999999999999988874
No 11
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.92 E-value=1.6e-26 Score=239.64 Aligned_cols=173 Identities=24% Similarity=0.344 Sum_probs=141.6
Q ss_pred HHHHHHHHhCCCCC-----------------CCcchHHHHHHhhhhcccccCChHH-HHhhccCCCCcceeeEecCCCCC
Q psy6341 2 KWILSLLREREIGI-----------------PPEQSLETAKAIKERYSYICPDIAK-EFAKYDADPGKWMRNLFYSPTSW 63 (465)
Q Consensus 2 ~yL~~lL~~rg~~~-----------------~~~~e~~iv~~IKE~~CyVs~d~~~-e~~~~~~~~~~~~~~y~LP~~~~ 63 (465)
+||+++|.++++.+ ....+..++++|||++|||+.+... +..... ......|+||
T Consensus 181 ~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~lP---- 253 (393)
T PF00022_consen 181 EYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQAS---ENPEKSYELP---- 253 (393)
T ss_dssp HHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHC---STTTEEEE-T----
T ss_pred HHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccc---cccceecccc----
Confidence 68999999974432 2334678999999999999999885 222211 3346789999
Q ss_pred CCCCCCCCCCCceEEEecccccc-cc-CCCCCC----C-------CchhhhhhcccccCCcccccccccceEEecccccc
Q psy6341 64 KKSPSDRPSIPFFTQNFQFKSFL-FS-FSNPDF----T-------TPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMF 130 (465)
Q Consensus 64 ~~DG~~~~~~~~~~I~l~~Erf~-PE-l~~~~~----~-------~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~ 130 (465)
|| +.+.++.|||+ || ||+|+. . .||+++|.+||++||.|+|+.|++||||+||+|+|
T Consensus 254 --dg--------~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i 323 (393)
T PF00022_consen 254 --DG--------QTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLI 323 (393)
T ss_dssp --TS--------SEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGS
T ss_pred --cc--------cccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccc
Confidence 89 99999999999 88 455431 2 39999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecc-cccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 131 RDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRK-FQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 131 ~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~-~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
|||.+||++||..+.+. ..++++++.+ ++ .+++|+||||+|+++.|++++++|++|++.|.
T Consensus 324 ~G~~eRL~~eL~~~~~~-----------~~~~~v~~~~~~~-~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~ 385 (393)
T PF00022_consen 324 PGFKERLQQELRSLLPS-----------STKVKVIAPPSDR-QFAAWIGGSILASLSSFQSFWITREEYEEYGP 385 (393)
T ss_dssp TTHHHHHHHHHHHHSGT-----------TSTEEEE--T-TT-TSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGG
T ss_pred cchHHHHHHHhhhhhhc-----------cccceeccCchhh-hhcccccceeeeccccccceeeeHHHHhCcCc
Confidence 99999999999997653 3468888877 66 99999999999999999999999999998885
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.92 E-value=2.4e-25 Score=229.80 Aligned_cols=178 Identities=28% Similarity=0.390 Sum_probs=148.7
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
++|+++|.++++.+....+.+++++|||++|||+.++.+++.............|.|| || +.+.++
T Consensus 182 ~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lp------d~--------~~i~~~ 247 (371)
T cd00012 182 RYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELP------DG--------RTIKVG 247 (371)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECC------CC--------eEEEEC
Confidence 5889999999887666667799999999999999998877532111223446789999 89 999999
Q ss_pred ccccc-cc-CCCCC----CCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 82 FKSFL-FS-FSNPD----FTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 82 ~Erf~-PE-l~~~~----~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
.|||. || ||+|. ...||+++|.++|.+||.++|+.|++||+|+||+|+++||.+||++||..++|..
T Consensus 248 ~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~------- 320 (371)
T cd00012 248 NERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS------- 320 (371)
T ss_pred hHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc-------
Confidence 99999 88 45542 2679999999999999999999999999999999999999999999999987631
Q ss_pred cCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 156 SGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 156 ~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
....+++....++ .+++|+|||++|+++.|+..++||++|.+.|.
T Consensus 321 --~~~~~~~~~~~~~-~~~aw~G~si~as~~~~~~~~itk~eY~E~G~ 365 (371)
T cd00012 321 --KDTKVKVIAPPER-KYSVWLGGSILASLSTFQQLWITKEEYEEHGP 365 (371)
T ss_pred --cceEEEEccCCCc-cccEEeCchhhcCchhhhheEeeHHHHhhhCc
Confidence 1234555555566 99999999999999999999999999988875
No 13
>PTZ00452 actin; Provisional
Probab=99.91 E-value=7.9e-25 Score=227.09 Aligned_cols=154 Identities=34% Similarity=0.467 Sum_probs=127.2
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
..+++|+|+|||+|++|+++++++++||+||+ |++||||||+|++.|+|+||
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~--------g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~l 185 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTS--------GKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLC 185 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHC--------CCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHH
Confidence 35699999999999999999999999999999 99999999999999999999
Q ss_pred -----hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc----cccccCCCCC---------CCCeEEeccc
Q psy6341 272 -----SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR----NKVWKQPKLS---------RNDTLIFVPI 333 (465)
Q Consensus 272 -----~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~----~~~~~l~~l~---------~~~eilF~P~ 333 (465)
++|.++++++....+.+++++|||++|||+.||.++++.... ...|++||.. ..+|+||+|+
T Consensus 186 t~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~ 265 (375)
T PTZ00452 186 TDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPK 265 (375)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChh
Confidence 566667777776677899999999999999999998875432 2457666643 4499999999
Q ss_pred cccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCCC
Q psy6341 334 LLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAPR 390 (465)
Q Consensus 334 ~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (465)
++|. ..+..+.+.++|.. +-.|++++ .+++ ||||||++--
T Consensus 266 ~~g~~~~gi~~~i~~si~~----c~~d~r~~----------L~~n---IvL~GG~Sl~ 306 (375)
T PTZ00452 266 LIGLEVAGIHHLAYSSIKK----CDLDLRQE----------LCRN---IVLSGGTTLF 306 (375)
T ss_pred hcCCCCCChhHHHHHHHHh----CCHhHHHH----------hhcc---EEEecccccc
Confidence 9998 56777777777766 34555444 4577 9999998753
No 14
>KOG0676|consensus
Probab=99.91 E-value=4.8e-25 Score=225.56 Aligned_cols=153 Identities=37% Similarity=0.527 Sum_probs=128.4
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-------------------
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------------------- 271 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV------------------- 271 (465)
+..||+|+|+|||+||+||+|++.|++| ||. |++||+|||+|+++||++||
T Consensus 112 ~~nREk~tqi~FE~fnvpa~yva~qavl--ya~--------g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~d 181 (372)
T KOG0676|consen 112 KANREKLTQIMFETFNVPALYVAIQAVL--YAS--------GRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRD 181 (372)
T ss_pred hHhHHHHHHHhhhhcCccHhHHHHHHHH--HHc--------CCeeEEEEEcCCCceeeeecccccccchhhheecccchh
Confidence 5567999999999999999999999988 998 99999999999999999999
Q ss_pred ------hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc----cccccCCCCC---------CCCeEEecc
Q psy6341 272 ------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR----NKVWKQPKLS---------RNDTLIFVP 332 (465)
Q Consensus 272 ------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~----~~~~~l~~l~---------~~~eilF~P 332 (465)
++|.++++++....+.+++++|||++|||+.||++|+..... ...|.+||.. ..+|++|+|
T Consensus 182 lt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP 261 (372)
T KOG0676|consen 182 LTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQP 261 (372)
T ss_pred hHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCcccccchhcCCh
Confidence 445557889999999999999999999999999999987321 3456666654 459999999
Q ss_pred ccccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCCC
Q psy6341 333 ILLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAPR 390 (465)
Q Consensus 333 ~~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (465)
+.+|. ..+..+.+.++|.. +..|++| ++|.+ |||+|||.-.
T Consensus 262 ~~~g~e~~gi~~~~~~sI~k----cd~dlrk----------~L~~n---ivLsGGtT~~ 303 (372)
T KOG0676|consen 262 SLLGMESPGIHELTVNSIMK----CDIDLRK----------DLYEN---IVLSGGTTMF 303 (372)
T ss_pred hhcCCCCCchhHHHHHHHHh----CChhHhH----------HHHhh---eEEeCCcccc
Confidence 99998 67888888887777 3555433 26788 9999998754
No 15
>PTZ00466 actin-like protein; Provisional
Probab=99.90 E-value=4e-24 Score=222.21 Aligned_cols=155 Identities=28% Similarity=0.409 Sum_probs=128.1
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-------------------
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------------------- 271 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV------------------- 271 (465)
+..+++|+|+|||+|++|+++++.+++||+||+ |++||||||+|++.|+|+||
T Consensus 119 ~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~--------g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~ 190 (380)
T PTZ00466 119 QKNKEKIAEVFFETFNVPALFISIQAILSLYSC--------GKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD 190 (380)
T ss_pred HHHHHHHHHHHhccCCCCeEEEecchHHHHHhc--------CCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhH
Confidence 345699999999999999999999999999999 99999999999999999999
Q ss_pred ------hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc---cccccCCCCC---------CCCeEEeccc
Q psy6341 272 ------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR---NKVWKQPKLS---------RNDTLIFVPI 333 (465)
Q Consensus 272 ------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~---~~~~~l~~l~---------~~~eilF~P~ 333 (465)
++|..++..+++..+.+++++|||++|||+.||.++++.... ...|++||.. ..+|+||+|+
T Consensus 191 lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~ 270 (380)
T PTZ00466 191 ITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPS 270 (380)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCcc
Confidence 566667777777788899999999999999999988865322 2457666653 3499999999
Q ss_pred cccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCCC
Q psy6341 334 LLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAPR 390 (465)
Q Consensus 334 ~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (465)
++|. ..+..+.+.++|.. +-.|++++ .+++ ||||||++--
T Consensus 271 ~~g~~~~gl~~~i~~sI~~----c~~d~r~~----------L~~n---IvL~GG~Sl~ 311 (380)
T PTZ00466 271 ILGLEYLGLSELIVTSITR----ADMDLRRT----------LYSH---IVLSGGTTMF 311 (380)
T ss_pred ccCCCCCCHHHHHHHHHHh----CChhhHHH----------Hhhc---EEEeCCcccc
Confidence 9998 56777777777776 34565444 4577 9999999753
No 16
>PTZ00281 actin; Provisional
Probab=99.90 E-value=8.9e-24 Score=219.27 Aligned_cols=155 Identities=34% Similarity=0.508 Sum_probs=127.4
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-------------------
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------------------- 271 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV------------------- 271 (465)
+..+++|+|+|||+|++|+++++.+++||+|++ |++||||||+|++.|+|+||
T Consensus 114 ~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~--------g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~ 185 (376)
T PTZ00281 114 KANREKMTQIMFETFNTPAMYVAIQAVLSLYAS--------GRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 185 (376)
T ss_pred HHHHHHHHHHHhcccCCceeEeeccHHHHHHhc--------CCceEEEEECCCceEEEEEEEecccchhheeeccCcHHH
Confidence 356799999999999999999999999999999 99999999999999999999
Q ss_pred ------hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc----cccccCCCCC---------CCCeEEecc
Q psy6341 272 ------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR----NKVWKQPKLS---------RNDTLIFVP 332 (465)
Q Consensus 272 ------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~----~~~~~l~~l~---------~~~eilF~P 332 (465)
++|..+++.+....+.+++++|||++|||+.||..+++.... ...|.+||.. ..+|+||+|
T Consensus 186 lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P 265 (376)
T PTZ00281 186 LTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQP 265 (376)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcccccCh
Confidence 566667777777778899999999999999999998876532 2456666543 348999999
Q ss_pred ccccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCCC
Q psy6341 333 ILLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAPR 390 (465)
Q Consensus 333 ~~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (465)
+.+|. ..+..+.|.++|.. +-.|++++ .+++ ||||||++--
T Consensus 266 ~~~~~~~~gi~~~i~~sI~~----~~~d~r~~----------L~~n---Ivl~GG~s~~ 307 (376)
T PTZ00281 266 SFLGMESAGIHETTYNSIMK----CDVDIRKD----------LYGN---VVLSGGTTMF 307 (376)
T ss_pred hhcCCCCCCHHHHHHHHHHh----CChhHHHH----------HHhh---ccccCccccC
Confidence 99997 56777777777775 34555544 4577 9999999753
No 17
>KOG0679|consensus
Probab=99.90 E-value=5e-25 Score=221.38 Aligned_cols=154 Identities=15% Similarity=0.273 Sum_probs=126.5
Q ss_pred HHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEecccccc-cc-CCCCCC----
Q psy6341 21 LETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQFKSFL-FS-FSNPDF---- 94 (465)
Q Consensus 21 ~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~Erf~-PE-l~~~~~---- 94 (465)
+.++++.||.+|-|+.....|-..+ ....+.|++| || +..++|.|||+ || ||.|+.
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~~~----~i~~~~~efP------~g--------~~~~~G~er~ripe~lF~Ps~v~~~ 306 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEVAA----QIPTKHFEFP------DG--------YTLDFGAERFRIPEYLFKPSLVKSS 306 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcccccc----cCCCccccCC------CC--------cccccCcceeecchhhcCcchhccc
Confidence 4688888888888885433221111 1346789999 89 89999999999 88 666531
Q ss_pred ------------CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccccCcccee
Q psy6341 95 ------------TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKV 162 (465)
Q Consensus 95 ------------~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v 162 (465)
..|+++++..||+.||.|+|..||.||||+||+|+++||.+||++||..+.|. . ++
T Consensus 307 s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~-----------s-rl 374 (426)
T KOG0679|consen 307 SKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPS-----------S-RL 374 (426)
T ss_pred cccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCc-----------c-eE
Confidence 46999999999999999999999999999999999999999999999998773 2 66
Q ss_pred eeeecc--cccceeeeecccccCCcccccceEEEeeeecccCCC
Q psy6341 163 TEVSRK--FQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGRG 204 (465)
Q Consensus 163 ~v~~~~--~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~G 204 (465)
++++.. ..|+|++|+|||||||+++|+++|++|++|++-|+.
T Consensus 375 ki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d 418 (426)
T KOG0679|consen 375 KIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKD 418 (426)
T ss_pred EEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhH
Confidence 666442 334999999999999999999999999999877763
No 18
>KOG0680|consensus
Probab=99.90 E-value=9.2e-24 Score=208.06 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=129.0
Q ss_pred ccchhhhhhccCcceEEeechhhhhhhcccccCCcc---CCceeEEEEEcCCCeeEEeec-----------------hhh
Q psy6341 215 NQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIE---ERTLTGIVVDSGDGVTHVIPV-----------------SLL 274 (465)
Q Consensus 215 e~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~---~g~~tgLVVD~G~s~T~VvPV-----------------~lL 274 (465)
+.+.|++||+|+|.+++-+..|+|+++......+.. ....++||||+|+++|||+|| ++|
T Consensus 110 ~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~L 189 (400)
T KOG0680|consen 110 EHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKAL 189 (400)
T ss_pred hhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHH
Confidence 789999999999999999999999998742222110 123489999999999999999 555
Q ss_pred hh------cCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhcc-------ccccCCCCC------------------
Q psy6341 275 RE------REIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVRN-------KVWKQPKLS------------------ 323 (465)
Q Consensus 275 ~~------~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~~-------~~~~l~~l~------------------ 323 (465)
++ .|++++++++++++++|||.+||||+||.++|+.+... ..|+|||+.
T Consensus 190 Tn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~ 269 (400)
T KOG0680|consen 190 TNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDE 269 (400)
T ss_pred HHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCc
Confidence 54 58889999999999999999999999999999877542 478899986
Q ss_pred ----------CCCeEEeccccccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCC
Q psy6341 324 ----------RNDTLIFVPILLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 324 ----------~~~eilF~P~~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
..||+||+|+++|+ |.|..|.++++|++ ||+..+- ..+++ ||++||++-
T Consensus 270 qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~-----~Pe~~~p---------~l~~N---Iv~iGGn~~ 329 (400)
T KOG0680|consen 270 QIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSM-----LPEEVRP---------LLLEN---IVCIGGNSN 329 (400)
T ss_pred ceeeecccccccchhhcChhhcCcccCCchHHHHHHHHh-----CHHHHHH---------HHHhc---EEEecCccC
Confidence 23999999999999 89999999999987 3542221 14577 999999975
No 19
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.88 E-value=1.8e-23 Score=220.17 Aligned_cols=176 Identities=25% Similarity=0.347 Sum_probs=148.9
Q ss_pred HHHHHHHHh-----CCCCCCCc---chHHHHHHhhhhcc-------cccCChHHHHhhccC---------------CCCc
Q psy6341 2 KWILSLLRE-----REIGIPPE---QSLETAKAIKERYS-------YICPDIAKEFAKYDA---------------DPGK 51 (465)
Q Consensus 2 ~yL~~lL~~-----rg~~~~~~---~e~~iv~~IKE~~C-------yVs~d~~~e~~~~~~---------------~~~~ 51 (465)
+||+++|++ +++++... .+.++++.||+++| |++.+..++...... ....
T Consensus 195 ~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (444)
T COG5277 195 DYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSI 274 (444)
T ss_pred HHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhcc
Confidence 589999999 99999876 66899999999999 999998776533211 0123
Q ss_pred ceeeEecCCCCCCCCCCCCCCCCceEEEeccc-ccc-cc-CCCCC--C----CC--------------------------
Q psy6341 52 WMRNLFYSPTSWKKSPSDRPSIPFFTQNFQFK-SFL-FS-FSNPD--F----TT-------------------------- 96 (465)
Q Consensus 52 ~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~E-rf~-PE-l~~~~--~----~~-------------------------- 96 (465)
...++.+| || +.+.++.| ||. || +|.++ . ..
T Consensus 275 ~~~~~~~p------~~--------~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
T COG5277 275 AKESKELP------DG--------EEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDI 340 (444)
T ss_pred ccccccCC------CC--------ceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccc
Confidence 35667777 88 99999999 999 77 45554 1 23
Q ss_pred -chhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecccccceee
Q psy6341 97 -PISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLH 175 (465)
Q Consensus 97 -gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~~r~~~~a 175 (465)
||++++.++|+.||.+.|+.||+||||+||+|++|||.+||++||+.+.|. ...++++.++++ .+.+
T Consensus 341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~-----------~~~v~v~~~~~~-~~~~ 408 (444)
T COG5277 341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPS-----------IWKVSVIPPPDP-SLDA 408 (444)
T ss_pred cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCC-----------CCceeeecCCch-hhcc
Confidence 499999999999999999999999999999999999999999999998763 457888888887 9999
Q ss_pred eecccccCCcccccceEEEeeeecccCC
Q psy6341 176 WYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 176 WiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
|+|||++|+++.++..++++++|.+-|.
T Consensus 409 W~GaSila~~~~~~~~~itk~eY~e~G~ 436 (444)
T COG5277 409 WLGASILASLETFQQLWITKEEYEEHGP 436 (444)
T ss_pred ccchhhhccccchhheEeeHHHhhhhhh
Confidence 9999999999999999999999987765
No 20
>PTZ00004 actin-2; Provisional
Probab=99.88 E-value=1e-22 Score=211.45 Aligned_cols=153 Identities=35% Similarity=0.528 Sum_probs=124.3
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
..+++++|+|||+|+||+++++.+++||+|++ |++||||||+|++.|+|+||
T Consensus 115 ~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~--------g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~l 186 (378)
T PTZ00004 115 ANREKMTQIMFETHNVPAMYVAIQAVLSLYAS--------GRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDL 186 (378)
T ss_pred HHHHHHHHHHHhhcCCceEEeeccHHHHHHhc--------CCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHH
Confidence 45689999999999999999999999999999 89999999999999999999
Q ss_pred -----hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc-----cccccCCCCC---------CCCeEEecc
Q psy6341 272 -----SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR-----NKVWKQPKLS---------RNDTLIFVP 332 (465)
Q Consensus 272 -----~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~-----~~~~~l~~l~---------~~~eilF~P 332 (465)
++|..++..+....+.+++++|||++|||+.||.++++.... ...|++|+.. ..+|+||+|
T Consensus 187 t~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P 266 (378)
T PTZ00004 187 TEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQP 266 (378)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcccccCh
Confidence 666667777777778899999999999999999999875432 2456666643 348999999
Q ss_pred cccccC--CcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCC
Q psy6341 333 ILLRSL--PKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 333 ~~ig~~--~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
+.+|.. .+..+.+.++|+. +-.|++++ ++++ |||+||++-
T Consensus 267 ~~~~~~~~~gi~~~i~~sI~~----~~~d~r~~----------L~~n---Ivl~GG~s~ 308 (378)
T PTZ00004 267 SLIGKEEPPGIHELTFQSINK----CDIDIRKD----------LYGN---IVLSGGTTM 308 (378)
T ss_pred hhcCccccCChHHHHHHHHHh----CChhHHHH----------HHhh---EEeccchhc
Confidence 998853 4555666666665 44555444 4577 999999875
No 21
>KOG0678|consensus
Probab=99.85 E-value=1.4e-22 Score=199.97 Aligned_cols=190 Identities=54% Similarity=0.869 Sum_probs=155.1
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEecc
Q psy6341 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQF 82 (465)
Q Consensus 3 yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~ 82 (465)
+.++||++|+..+...+.+++.+.|||++||++.|+-+|..+++.++....+.|+-- +.+++.. ..|.++-
T Consensus 202 fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~ep~K~ikq~~~~-~~i~~~~--------~~vDvgy 272 (415)
T KOG0678|consen 202 FIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDREPAKWIKQYTGI-NVITGKK--------FVVDVGY 272 (415)
T ss_pred HHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhccCHHHHHHHHhcc-chhcCCc--------eeecccH
Confidence 568889999999998889999999999999999999999988876665555555321 1111112 6788899
Q ss_pred cccc-ccC-CCCC-----CCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccc
Q psy6341 83 KSFL-FSF-SNPD-----FTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETL 155 (465)
Q Consensus 83 Erf~-PEl-~~~~-----~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~ 155 (465)
|||. ||+ |+|+ +...|++++-..|+.|++|.|+.||+||+|+||+++|++|..|++++++.++..++..++.+
T Consensus 273 erFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~l 352 (415)
T KOG0678|consen 273 ERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGL 352 (415)
T ss_pred HhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhccc
Confidence 9999 774 4444 35679999999999999999999999999999999999999999999999998777665543
Q ss_pred cC---ccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccC
Q psy6341 156 SG---GYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKG 202 (465)
Q Consensus 156 ~~---~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g 202 (465)
.+ ..+.+.++.+... ++++|.|||+|||...|-....+++.|++.|
T Consensus 353 sg~k~~~vdvqvish~~q-r~avwfggs~lastpef~~~~~tk~~yee~g 401 (415)
T KOG0678|consen 353 SGIKSKPVDVQVLSHLLQ-RTAVWFGGSKLASTPEFVPACHTKEDYEEYG 401 (415)
T ss_pred ccCCCCCceeehhhhhhh-hcceeccCccccCCcccccccCcchhhhhhC
Confidence 32 3334666677777 8999999999999988888889999997776
No 22
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.85 E-value=3.5e-21 Score=202.18 Aligned_cols=161 Identities=47% Similarity=0.645 Sum_probs=123.9
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCC--ccCCceeEEEEEcCCCeeEEeec------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRP--IEERTLTGIVVDSGDGVTHVIPV------------------ 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~--~~~g~~tgLVVD~G~s~T~VvPV------------------ 271 (465)
..+++|+|+|||+|++|+++++.+++||+||++.... ...|+++|||||+|++.|+|+||
T Consensus 116 ~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~ 195 (414)
T PTZ00280 116 ENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGR 195 (414)
T ss_pred HHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHH
Confidence 4569999999999999999999999999998732111 11268999999999999999999
Q ss_pred -------hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc-----cccccCCCCC--------------CC
Q psy6341 272 -------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR-----NKVWKQPKLS--------------RN 325 (465)
Q Consensus 272 -------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~-----~~~~~l~~l~--------------~~ 325 (465)
++|.+++..+....+.+++++|||++|||+.||.+|++.... ...|.+++.. ..
T Consensus 196 ~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~ 275 (414)
T PTZ00280 196 DITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLG 275 (414)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcC
Confidence 566667776765566889999999999999999999986532 1245555432 34
Q ss_pred CeEEeccccccc--CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCC
Q psy6341 326 DTLIFVPILLRS--LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 326 ~eilF~P~~ig~--~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
+|+||+|..++. +.+..+.|.++|.. +-.|+++++. ++ ||||||++-
T Consensus 276 ~E~LF~P~~~~~~~~~gl~e~i~~sI~~----~~~d~r~~L~----------~n---IvL~GG~s~ 324 (414)
T PTZ00280 276 PEMFFHPEIFSSEWTTPLPEVVDDAIQS----CPIDCRRPLY----------KN---IVLSGGSTM 324 (414)
T ss_pred cccccChhhcCCccCCCHHHHHHHHHHh----CChhhHHHHh----------hc---EEEeCCccc
Confidence 899999999875 34666777777765 4456655544 77 999999985
No 23
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.80 E-value=1.6e-19 Score=186.47 Aligned_cols=153 Identities=40% Similarity=0.579 Sum_probs=122.2
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
..+++++|++||.|++|++++..++++++|+. |+++|||||+|++.|+|+||
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~--------g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l 180 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYAS--------GRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDL 180 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhC--------CCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHH
Confidence 44589999999999999999999999999999 89999999999999999999
Q ss_pred -----hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc-------cccccCCCCC---------CCCeEEe
Q psy6341 272 -----SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR-------NKVWKQPKLS---------RNDTLIF 330 (465)
Q Consensus 272 -----~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~-------~~~~~l~~l~---------~~~eilF 330 (465)
++|+.++..+....+.+++++|||++|||+.++.++++.... ...|.+|+.. ..+|+||
T Consensus 181 ~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf 260 (373)
T smart00268 181 TDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILF 260 (373)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcC
Confidence 455554556666678899999999999999999999875532 2356565543 4489999
Q ss_pred ccccccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCC
Q psy6341 331 VPILLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 331 ~P~~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
+|..++. ..+..+.|.+.|+. +-+|+++++ +++ ||||||+|-
T Consensus 261 ~p~~~~~~~~~i~~~i~~~i~~----~~~d~r~~l----------~~n---IvltGG~s~ 303 (373)
T smart00268 261 KPELIGLEQKGIHELVYESIQK----CDIDVRKDL----------YEN---IVLSGGSTL 303 (373)
T ss_pred CchhcCCCcCCHHHHHHHHHHh----CCHhHHHHH----------HhC---eEeeccccc
Confidence 9999887 55666666666654 445654444 467 999999985
No 24
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.78 E-value=7e-19 Score=181.73 Aligned_cols=154 Identities=42% Similarity=0.587 Sum_probs=120.9
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
..+++++|+|||.|++|++++..++++++|+. |+++|+|||+|++.|+|+||
T Consensus 109 ~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~--------g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l 180 (371)
T cd00012 109 SNREKTTEIMFETFNVPALYVAIQAVLSLYAS--------GRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDL 180 (371)
T ss_pred HHHHHHHHHhhccCCCCEEEEechHHHHHHhc--------CCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHH
Confidence 34589999999999999999999999999999 89999999999999999999
Q ss_pred -----hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhc-----cccccCCCCC---------CCCeEEecc
Q psy6341 272 -----SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR-----NKVWKQPKLS---------RNDTLIFVP 332 (465)
Q Consensus 272 -----~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~-----~~~~~l~~l~---------~~~eilF~P 332 (465)
++|+.++..++...+..++++|||++|||+.|+.+++.+... ...|.+|+.. ..+|+||+|
T Consensus 181 ~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p 260 (371)
T cd00012 181 TRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNP 260 (371)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCCh
Confidence 555556665666778899999999999999999988632211 2356666643 458999999
Q ss_pred ccccc-CCcccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCCCC
Q psy6341 333 ILLRS-LPKQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAPR 390 (465)
Q Consensus 333 ~~ig~-~~~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (465)
.+++. ..+..+.+.++|.. +.+|.++. .+++ ||||||+|--
T Consensus 261 ~~~~~~~~~i~~~i~~~i~~----~~~~~~~~----------l~~~---Ivl~GG~s~~ 302 (371)
T cd00012 261 SLIGSEQVGISEAIYSSINK----CDIDLRKD----------LYSN---IVLSGGSTLF 302 (371)
T ss_pred hhcCCCcCCHHHHHHHHHHh----CCHhHHHH----------HHhC---EEEeCCccCC
Confidence 99886 55665666555554 44554333 4477 9999999853
No 25
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.77 E-value=2.7e-19 Score=185.60 Aligned_cols=154 Identities=32% Similarity=0.428 Sum_probs=112.1
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-------------------
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------------------- 271 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV------------------- 271 (465)
+..+++|+|+|||+|+||++++..+++||+|+. |++||||||+|++.|+|+||
T Consensus 107 ~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~--------g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~ 178 (393)
T PF00022_consen 107 RSQREKLAEILFEKFGVPSVYFIPSPLLALYAS--------GRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDD 178 (393)
T ss_dssp HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHT--------TBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHH
T ss_pred chhhhhhhhhhhcccccceeeeeeccccccccc--------ccccccccccceeeeeeeeeeeccccccccccccccHHH
Confidence 345689999999999999999999999999999 99999999999999999999
Q ss_pred ------hhhhhcCCC-----------------CCCcCcHHHHHHHHHhcccccccHHH-HHHHhh--ccccccCCCCC--
Q psy6341 272 ------SLLREREIG-----------------IPPEQSLETAKAIKERYSYICPDIAK-EFAKYV--RNKVWKQPKLS-- 323 (465)
Q Consensus 272 ------~lL~~~~~~-----------------~~~~~~~~iv~~IKE~lCyVs~Dy~~-el~~~~--~~~~~~l~~l~-- 323 (465)
++|.+++.. +....+..+++++||++|||+.++.. +..... ....|.+|+..
T Consensus 179 lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i 258 (393)
T PF00022_consen 179 LTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTI 258 (393)
T ss_dssp HHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEE
T ss_pred HHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccccccc
Confidence 555554222 22334678999999999999999885 222222 24566666654
Q ss_pred -------CCCeEEecccccccC-C-------cccHHHHHHHHHHhcccChhHHHHhhhccCCccccccccceEEEeCCCC
Q psy6341 324 -------RNDTLIFVPILLRSL-P-------KQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSA 388 (465)
Q Consensus 324 -------~~~eilF~P~~ig~~-~-------~~se~ia~~ike~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (465)
..+|+||+|..++.. . +..+.|.++|+. +-.|+++++ +++ ||||||++
T Consensus 259 ~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~----~~~d~r~~l----------~~n---Ivl~GG~S 321 (393)
T PF00022_consen 259 ILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISK----CPIDLRKEL----------LSN---IVLTGGSS 321 (393)
T ss_dssp EESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHT----STTTTHHHH----------HTT---EEEESGGG
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhhc----ccccccccc----------ccc---eEEecccc
Confidence 127899999999873 3 566666666655 345554444 467 99999986
Q ss_pred C
Q psy6341 389 P 389 (465)
Q Consensus 389 ~ 389 (465)
-
T Consensus 322 ~ 322 (393)
T PF00022_consen 322 L 322 (393)
T ss_dssp G
T ss_pred c
Confidence 3
No 26
>KOG0678|consensus
Probab=99.76 E-value=4.3e-20 Score=182.55 Aligned_cols=130 Identities=61% Similarity=0.934 Sum_probs=101.1
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--hhhhhc---CCCCCCcC
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV--SLLRER---EIGIPPEQ 285 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV--~lL~~~---~~~~~~~~ 285 (465)
-..++.++|+|||.||+|.+|++.|++|||-++|++++..+..-||+|||+|.+.|||+|| .+.... +.-+...+
T Consensus 119 penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrd 198 (415)
T KOG0678|consen 119 PENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD 198 (415)
T ss_pred chhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCc
Confidence 3456999999999999999999999999999999988876677899999999999999999 222221 11112222
Q ss_pred cHHHHHHH-HHhcccccccHHHHHHHhhccccccCCCCCCCCeEEecccccccCCcccHHHHHHHHHHhcccChhHHHHh
Q psy6341 286 SLETAKAI-KERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFVPILLRSLPKQSLETAKAIKERYSYICPDIAKEF 364 (465)
Q Consensus 286 ~~~iv~~I-KE~lCyVs~Dy~~el~~~~~~~~~~l~~l~~~~eilF~P~~ig~~~~~se~ia~~ike~~~~~~~D~~~~~ 364 (465)
.++.++.+ ||+. .|+..+.+.+.|+++|++|||.||||+|||
T Consensus 199 iT~fiQ~llRer~-------------------------------------~~iP~e~sl~tak~iKe~ycy~cPdivkef 241 (415)
T KOG0678|consen 199 ITYFIQQLLRERE-------------------------------------VGIPPEQSLETAKAIKEKYCYTCPDIVKEF 241 (415)
T ss_pred hhHHHHHHhhCCC-------------------------------------CCCChHHhhhhhHHHHhhhcccCcHHHHHH
Confidence 22333222 2111 233447788999999999999999999999
Q ss_pred hhccCCccccccc
Q psy6341 365 AKYDADPGKWMRN 377 (465)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (465)
.+||.||.||+|+
T Consensus 242 ~k~d~ep~K~ikq 254 (415)
T KOG0678|consen 242 AKYDREPAKWIKQ 254 (415)
T ss_pred HHhccCHHHHHHH
Confidence 9999999999998
No 27
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.65 E-value=4.3e-16 Score=164.48 Aligned_cols=95 Identities=47% Similarity=0.695 Sum_probs=81.2
Q ss_pred ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCce--eEEEEEcCCCeeEEeec-----------------
Q psy6341 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTL--TGIVVDSGDGVTHVIPV----------------- 271 (465)
Q Consensus 211 ~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~--tgLVVD~G~s~T~VvPV----------------- 271 (465)
...+++++|++||+|+||+++++.+++|++|++ |+. +|+|||+|++.|||+||
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~--------g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG 190 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYAS--------GSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGG 190 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhc--------CCCCCceEEEEcCCCceeeEeeeccccccccceeeecCc
Confidence 366799999999999999999999999999999 888 99999999999999999
Q ss_pred --------hhhhh-----cCCCCCCc---CcHHHHHHHHHhcc-------cccccHHHHHHHhhc
Q psy6341 272 --------SLLRE-----REIGIPPE---QSLETAKAIKERYS-------YICPDIAKEFAKYVR 313 (465)
Q Consensus 272 --------~lL~~-----~~~~~~~~---~~~~iv~~IKE~lC-------yVs~Dy~~el~~~~~ 313 (465)
++|.. +++.+... .+.++++.||+++| |++.|..++++.+..
T Consensus 191 ~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~ 255 (444)
T COG5277 191 RDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEE 255 (444)
T ss_pred HHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhh
Confidence 55555 34444433 45899999999999 999998888765543
No 28
>KOG0681|consensus
Probab=99.63 E-value=5.8e-16 Score=161.62 Aligned_cols=127 Identities=19% Similarity=0.296 Sum_probs=107.1
Q ss_pred CCCCccccc------cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-----
Q psy6341 203 RGRPKKRWK------DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV----- 271 (465)
Q Consensus 203 ~Grp~~rW~------d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV----- 271 (465)
..||+--.+ -++++|+|+|||+||||+|.++.++++|.|.+.... +..+|+||++||++|||+||
T Consensus 115 idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~----~~~~~liis~g~~~T~vipvldG~~ 190 (645)
T KOG0681|consen 115 IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKS----SNKSGLIISMGHSATHVIPVLDGRL 190 (645)
T ss_pred CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcc----cCcceEEEecCCCcceeEEEecCch
Confidence 556665543 256899999999999999999999999999873322 34489999999999999999
Q ss_pred --------------------hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhccccccCCCCCCCCeEEec
Q psy6341 272 --------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFV 331 (465)
Q Consensus 272 --------------------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~~~~~~l~~l~~~~eilF~ 331 (465)
+||+.+|+.|....+...++.++..+||||.||.+|+.++.. +..+......++.
T Consensus 191 il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-----~d~~d~~~~~~ql 265 (645)
T KOG0681|consen 191 ILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-----MDYYDENRNYFQL 265 (645)
T ss_pred hhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-----hhhhhccceEEec
Confidence 888899999999999999999999999999999999998875 3345566778889
Q ss_pred ccccccC
Q psy6341 332 PILLRSL 338 (465)
Q Consensus 332 P~~ig~~ 338 (465)
|+...+.
T Consensus 266 P~~evl~ 272 (645)
T KOG0681|consen 266 PYTEVLA 272 (645)
T ss_pred ccccccc
Confidence 9987764
No 29
>KOG0679|consensus
Probab=99.55 E-value=3.2e-15 Score=151.08 Aligned_cols=63 Identities=37% Similarity=0.518 Sum_probs=56.1
Q ss_pred cCCCCCccc----c--ccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 201 KGRGRPKKR----W--KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 201 ~g~Grp~~r----W--~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
++..||..- | ...|+|++|+|||.|+||++|+++++++++||+ |+.|+||||+|++.|+|+||
T Consensus 103 ~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~--------GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 103 NPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN--------GRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred CccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc--------CCCceEEEEecCCCceeeee
Confidence 444555542 4 556799999999999999999999999999999 99999999999999999999
No 30
>KOG0681|consensus
Probab=99.31 E-value=3.9e-13 Score=140.71 Aligned_cols=116 Identities=16% Similarity=0.270 Sum_probs=99.5
Q ss_pred eEEEecccccc-cc-CCCCCC----CCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhhhhhhhhh
Q psy6341 76 FTQNFQFKSFL-FS-FSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARL 149 (465)
Q Consensus 76 ~~I~l~~Erf~-PE-l~~~~~----~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~ 149 (465)
..+++|.||++ || +|.|+. +.||.+++..++.+.|.+.+..|.+||+||||+|++||+.+||.+||....|-
T Consensus 511 ~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~-- 588 (645)
T KOG0681|consen 511 YQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPV-- 588 (645)
T ss_pred hhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheeccc--
Confidence 57889999999 88 455542 89999999999999999999999999999999999999999999999998762
Q ss_pred hhhccccCccceeeeeecccccceeeeecccccCCcccccceEEEeeeecccCC
Q psy6341 150 KLSETLSGGYIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGR 203 (465)
Q Consensus 150 ~~~~~~~~~~~~v~v~~~~~r~~~~aWiGgSilAsl~~~~~~~vtke~y~k~g~ 203 (465)
...+.|+-..+. ...||.||+.+|....|...++|+++|++.|.
T Consensus 589 ---------gS~i~V~rasdP-~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~ 632 (645)
T KOG0681|consen 589 ---------GSSINVVRASDP-VLDAWRGASAWAANPTFTLTQITRKDYEEKGE 632 (645)
T ss_pred ---------CCceEEEecCCc-chhhhhhhHHhhcCcccchhhhhHHhhhhhhH
Confidence 234555555444 88999999999988888888899999988775
No 31
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.72 E-value=4.4e-08 Score=99.89 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=63.7
Q ss_pred cccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec--------------------
Q psy6341 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-------------------- 271 (465)
Q Consensus 212 d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-------------------- 271 (465)
+..++..+.+||.+|++.+++...+++|+|++.... .....++|||+|+++|+++||
T Consensus 113 ~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~---~~~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~ 189 (335)
T PRK13930 113 EVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPV---TEPVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDE 189 (335)
T ss_pred HHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCc---CCCCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHH
Confidence 333455666899999999999999999999872110 012468999999999999999
Q ss_pred ---hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHH
Q psy6341 272 ---SLLREREIGIPPEQSLETAKAIKERYSYICPDIA 305 (465)
Q Consensus 272 ---~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~ 305 (465)
++|.++ +.+. .....++++|+++|+++.++.
T Consensus 190 ~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~ 223 (335)
T PRK13930 190 AIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDE 223 (335)
T ss_pred HHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCC
Confidence 222222 1222 345789999999999987643
No 32
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.71 E-value=4.5e-08 Score=100.08 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=63.3
Q ss_pred cccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec----------------------
Q psy6341 214 VNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV---------------------- 271 (465)
Q Consensus 214 ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV---------------------- 271 (465)
.++..+.+||.+|++.+++...+++|+|+..... .....++|||+|+++|++++|
T Consensus 113 ~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l 189 (333)
T TIGR00904 113 ERRAVKESALSAGAREVYLIEEPMAAAIGAGLPV---EEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAI 189 (333)
T ss_pred HHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcc---cCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHH
Confidence 3455778999999999999999999999872110 122678999999999999998
Q ss_pred -hhhhhcCCCCCCcCcHHHHHHHHHhcccccccH
Q psy6341 272 -SLLREREIGIPPEQSLETAKAIKERYSYICPDI 304 (465)
Q Consensus 272 -~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy 304 (465)
+++.++ +....+...++++|+++|++..++
T Consensus 190 ~~~l~~~---~~~~~~~~~ae~lK~~l~~~~~~~ 220 (333)
T TIGR00904 190 INYIRRT---YNLLIGEQTAERIKIEIGSAYPLN 220 (333)
T ss_pred HHHHHHH---hcccCCHHHHHHHHHHHhcccccc
Confidence 122222 122345678999999999988764
No 33
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.62 E-value=8.9e-08 Score=97.75 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=67.9
Q ss_pred cccccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec----------------
Q psy6341 208 KRWKDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV---------------- 271 (465)
Q Consensus 208 ~rW~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV---------------- 271 (465)
..|.+..+++++.+||.+|++.+++...+++|+|+..... .....++|||+|+++|+++++
T Consensus 105 ~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~ 181 (334)
T PRK13927 105 SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPV---TEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGD 181 (334)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHH
Confidence 3577788899999999999999999999999999872111 112457999999999999998
Q ss_pred -------hhhhhcCCCCCCcCcHHHHHHHHHhccccccc
Q psy6341 272 -------SLLREREIGIPPEQSLETAKAIKERYSYICPD 303 (465)
Q Consensus 272 -------~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~D 303 (465)
++|.++ ..+. .+...++++|+++|++..+
T Consensus 182 ~id~~l~~~l~~~-~~~~--~~~~~ae~iK~~~~~~~~~ 217 (334)
T PRK13927 182 KFDEAIINYVRRN-YNLL--IGERTAERIKIEIGSAYPG 217 (334)
T ss_pred HHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHhhccCCC
Confidence 122111 1222 3556799999999998764
No 34
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.59 E-value=7e-08 Score=99.04 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=64.7
Q ss_pred ccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec---------------------
Q psy6341 213 CVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV--------------------- 271 (465)
Q Consensus 213 ~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV--------------------- 271 (465)
.++++.+ +||.+|++.+++...+++|+++..... ....+++|||+|+++|+++++
T Consensus 113 ~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~ 188 (335)
T PRK13929 113 ERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPV---DEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCc---CCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHH
Confidence 4467777 899999999999999999999872111 135689999999999999998
Q ss_pred --hhhhhcCCCCCCcCcHHHHHHHHHhcccccccHH
Q psy6341 272 --SLLREREIGIPPEQSLETAKAIKERYSYICPDIA 305 (465)
Q Consensus 272 --~lL~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~ 305 (465)
++|.+ .+.+. .+...+++||+++|+++.++.
T Consensus 189 l~~~l~~-~~~~~--~~~~~AE~iK~~l~~~~~~~~ 221 (335)
T PRK13929 189 IVSFVRK-KYNLL--IGERTAEQVKMEIGYALIEHE 221 (335)
T ss_pred HHHHHHH-HhCcC--cCHHHHHHHHHHHcCCCCCCC
Confidence 22222 22222 345789999999999986643
No 35
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.59 E-value=1.9e-08 Score=103.16 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
++|.+.|.+ ++++.. +.+.+++||+++|++..+...+...... ....+.+| ..+.++
T Consensus 187 ~~l~~~l~~-~~~~~~--~~~~AE~iK~~l~~~~~~~~~~~~~v~g----~~~~~~~p----------------~~i~i~ 243 (335)
T PRK13929 187 EDIVSFVRK-KYNLLI--GERTAEQVKMEIGYALIEHEPETMEVRG----RDLVTGLP----------------KTITLE 243 (335)
T ss_pred HHHHHHHHH-HhCcCc--CHHHHHHHHHHHcCCCCCCCCceEEEeC----CccCCCCC----------------eEEEEc
Confidence 356666653 455542 3478999999999997653221100000 00012233 688899
Q ss_pred ccccc---ccCCCCCCCCchhhhhhcccccCCccccccccc-ceEEecccccccchHHHHHHhhh
Q psy6341 82 FKSFL---FSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYH-NIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 82 ~Erf~---PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~-NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.++|. ++++ ..|.++|.++|.+|+.+++..+++ +|||+||+|+||||.+||++++.
T Consensus 244 ~~~~~~~i~~~l-----~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 244 SKEIQGAMRESL-----LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 89888 5543 248899999999999999999998 79999999999999999999985
No 36
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.49 E-value=2.8e-08 Score=101.30 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEec
Q psy6341 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQ 81 (465)
Q Consensus 2 ~yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~ 81 (465)
++|.++|.++ +++. ...+.++.+|+++|+++.+...+...... ....+.+| ..+.++
T Consensus 189 ~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------~~~~i~ 245 (335)
T PRK13930 189 EAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEESMEVRG----RDLVTGLP----------------KTIEIS 245 (335)
T ss_pred HHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCceEEEEC----ccCCCCCC----------------eeEEEC
Confidence 4566666554 3332 23468999999999998763321000000 00011122 467777
Q ss_pred cccccccCCCCCCCCchhhhhhcccccCCcccccccccc-eEEecccccccchHHHHHHhhh
Q psy6341 82 FKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 82 ~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~N-IVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.++|. +++.+. ..++.+.|.++|.+|+.+.+..++.| |+|+||+|++|||.+||.+++.
T Consensus 246 ~~~~~-e~i~~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~ 305 (335)
T PRK13930 246 SEEVR-EALAEP-LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG 305 (335)
T ss_pred HHHHH-HHHHHH-HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC
Confidence 78775 433332 35899999999999999999999998 9999999999999999999885
No 37
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.35 E-value=8.7e-08 Score=97.79 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEecc
Q psy6341 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQF 82 (465)
Q Consensus 3 yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~ 82 (465)
+|.++|.+ ++++. .+.+.++.||+++|++..+.... .+.+..... ..| .+ ..+.|+.
T Consensus 186 ~l~~~l~~-~~~~~--~~~~~ae~iK~~~~~~~~~~~~~-------------~~~~~~~~~-~~~-----~~-~~~~i~~ 242 (334)
T PRK13927 186 AIINYVRR-NYNLL--IGERTAERIKIEIGSAYPGDEVL-------------EMEVRGRDL-VTG-----LP-KTITISS 242 (334)
T ss_pred HHHHHHHH-HhCcC--cCHHHHHHHHHHhhccCCCCCCc-------------eEEEeCccc-CCC-----CC-eEEEECH
Confidence 45555543 23332 23468999999999987542100 111110000 011 11 4678888
Q ss_pred ccccccCCCCCCCCchhhhhhcccccCCcccccccccc-eEEecccccccchHHHHHHhhh
Q psy6341 83 KSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 83 Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~N-IVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
++|. |++.+. ..+|.++|.++|.+|+.+.+..++.+ |+|+||+|++|||.+||++++.
T Consensus 243 ~~~~-e~i~~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~ 301 (334)
T PRK13927 243 NEIR-EALQEP-LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG 301 (334)
T ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC
Confidence 8886 333222 35899999999999999999999975 9999999999999999999884
No 38
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.34 E-value=1.6e-07 Score=95.97 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEecc
Q psy6341 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQF 82 (465)
Q Consensus 3 yL~~lL~~rg~~~~~~~e~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~ 82 (465)
+|.++|.++ ++.. .+.+.++.||+++|++..+..++.. ..-. .....+.+| ++ +.++.
T Consensus 188 ~l~~~l~~~-~~~~--~~~~~ae~lK~~l~~~~~~~~~~~~-~~~~--~~~~~~~~~------~~----------~~i~~ 245 (333)
T TIGR00904 188 AIINYIRRT-YNLL--IGEQTAERIKIEIGSAYPLNDEPRK-MEVR--GRDLVTGLP------RT----------IEITS 245 (333)
T ss_pred HHHHHHHHH-hccc--CCHHHHHHHHHHHhccccccccccc-eeec--CccccCCCC------eE----------EEECH
Confidence 455555432 3332 2457899999999998766322111 0000 001223445 33 35554
Q ss_pred ccccccCCCCCCCCchhhhhhcccccCCccccccccc-ceEEecccccccchHHHHHHhhh
Q psy6341 83 KSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYH-NIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 83 Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~-NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+.+ +|++.+. ..++.+.|.++|.+|+.+.+..+++ +|||+||+|++|||.+||++++.
T Consensus 246 ~~~-~e~i~~~-~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~ 304 (333)
T TIGR00904 246 VEV-REALQEP-VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG 304 (333)
T ss_pred HHH-HHHHHHH-HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC
Confidence 533 4443333 3589999999999999999999997 89999999999999999999985
No 39
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.16 E-value=4.9e-06 Score=85.27 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=48.2
Q ss_pred cccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 210 WKDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 210 W~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
|.+..+++.+.+||.+|++.+++.+.++.|+++..... .....++|||+|+++|.+.+|
T Consensus 106 ~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lVvDiGggttdvsvv 164 (336)
T PRK13928 106 ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDI---SQPSGNMVVDIGGGTTDIAVL 164 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEE
Confidence 44556788899999999999999999999999872211 012568999999999999998
No 40
>KOG0797|consensus
Probab=98.02 E-value=9.4e-07 Score=92.95 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=79.8
Q ss_pred chhhhhhcccccC-CcccccccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecc--cccce
Q psy6341 97 PISEIVDTVIQNC-PIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRK--FQGRR 173 (465)
Q Consensus 97 gL~elI~~sI~~c-~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~--~r~~~ 173 (465)
+|.+.|..||..| ..|++++||++|.++||..++|||.+-|+..+....|. .+ ..-..|.|+.+| +.+++
T Consensus 505 ~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp-~~------~~I~~VsVip~prdMdp~~ 577 (618)
T KOG0797|consen 505 ALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPP-GR------EAIDTVSVIPPPRDMDPQF 577 (618)
T ss_pred ccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCc-cc------cccCceeecCCCcCCCchh
Confidence 5566688888776 56799999999999999999999999999999887765 11 112356777666 55699
Q ss_pred eeeecccccCCcccccceEEEeeeecccC
Q psy6341 174 LHWYGHVERRDESYIGKRVERMEVRGRKG 202 (465)
Q Consensus 174 ~aWiGgSilAsl~~~~~~~vtke~y~k~g 202 (465)
-+|.||+|+|.+++....|++..+|+-.|
T Consensus 578 VaWKGaaIla~l~~~~ELwI~~~dW~~~G 606 (618)
T KOG0797|consen 578 VAWKGAAILAILDFVRELWIENSDWQVHG 606 (618)
T ss_pred eEecchhhhhHHHHHHHHheechhHhhhh
Confidence 99999999999999999999988886444
No 41
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.67 E-value=1.1e-05 Score=82.71 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=53.7
Q ss_pred eEEEeccccccccCCCCCCCCchhhhhhcccccCCccccccccc-ceEEecccccccchHHHHHHhhhh
Q psy6341 76 FTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYH-NIVLSGGSTMFRDFGRRLQRDIKR 143 (465)
Q Consensus 76 ~~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~-NIVLsGGsSl~~Gf~eRL~~EL~~ 143 (465)
..+.++.++|. +++.+- ...+.+.|.++|.+++.+++..++. +|+|+||+|++||+.++|++++..
T Consensus 235 ~~~~i~~~~~~-eii~~~-~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~ 301 (336)
T PRK13928 235 KTITVTSEEIR-EALKEP-VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV 301 (336)
T ss_pred eEEEECHHHHH-HHHHHH-HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC
Confidence 45778888777 222222 3478899999999999999989998 899999999999999999988853
No 42
>KOG0797|consensus
Probab=97.31 E-value=0.00048 Score=73.07 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=84.7
Q ss_pred cccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec----------------------
Q psy6341 214 VNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV---------------------- 271 (465)
Q Consensus 214 ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV---------------------- 271 (465)
++++.-++|-+++|.++.+...++.+.|.+ |-.++.|||+|+..|+|+.|
T Consensus 243 veefl~ilL~eL~F~~~~v~QESlaatfGa--------Glss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr 314 (618)
T KOG0797|consen 243 VEEFLTILLGELGFNSAVVHQESLAATFGA--------GLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITR 314 (618)
T ss_pred HHHHHHHHHHHhccceEEEEhhhhHHHhcC--------CccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHH
Confidence 488888888889999999999999999999 99999999999999999999
Q ss_pred ---hhhhhc-----CCCCCCcCcHHHHHHHHHhcccccc-cHHHHHHHhhc---cccccCCCCCCC------CeEEeccc
Q psy6341 272 ---SLLRER-----EIGIPPEQSLETAKAIKERYSYICP-DIAKEFAKYVR---NKVWKQPKLSRN------DTLIFVPI 333 (465)
Q Consensus 272 ---~lL~~~-----~~~~~~~~~~~iv~~IKE~lCyVs~-Dy~~el~~~~~---~~~~~l~~l~~~------~eilF~P~ 333 (465)
-+|... ..++....+..+++++||+.|-... ++.-.+..+.. +.-...+++.-+ |-.||+|.
T Consensus 315 ~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~ 394 (618)
T KOG0797|consen 315 CFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPN 394 (618)
T ss_pred HHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhh
Confidence 233322 2233446788999999999998764 34433433322 111112333333 56789999
Q ss_pred ccccC
Q psy6341 334 LLRSL 338 (465)
Q Consensus 334 ~ig~~ 338 (465)
+.++.
T Consensus 395 lf~~~ 399 (618)
T KOG0797|consen 395 LFVIE 399 (618)
T ss_pred hhhcc
Confidence 87764
No 43
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=96.71 E-value=0.002 Score=66.17 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=78.2
Q ss_pred chhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec-----------------------hh
Q psy6341 217 DLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV-----------------------SL 273 (465)
Q Consensus 217 ~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV-----------------------~l 273 (465)
+.|. +...|+..+++...++.+++...-. . ......+|||+|+++|.+.=+ ++
T Consensus 112 ~~~a-~~~aGa~~V~li~ep~AaAiGaGl~--i-~~~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ 187 (326)
T PF06723_consen 112 LIDA-ARQAGARKVYLIEEPIAAAIGAGLD--I-FEPRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRY 187 (326)
T ss_dssp HHHH-HHHTT-SEEEEEEHHHHHHHHTT----T-TSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHH
T ss_pred HHHH-HHHcCCCEEEEecchHHHHhcCCCC--C-CCCCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHH
Confidence 3344 4568999999999999999987111 0 012356999999999998866 44
Q ss_pred hhhcCCCCCCcCcHHHHHHHHHhcccccccHHHHHHHhhccccccCCCCC-CCCeEEeccc-cccc-CCcccHHHHHHHH
Q psy6341 274 LREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLS-RNDTLIFVPI-LLRS-LPKQSLETAKAIK 350 (465)
Q Consensus 274 L~~~~~~~~~~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~~~~~~l~~l~-~~~eilF~P~-~ig~-~~~~se~ia~~ik 350 (465)
+.++| +.......+++||++++++...-+++ ...- .--++. .-|..+...+ .+.- -...-..|...++
T Consensus 188 ir~~y---~l~Ig~~tAE~iK~~~g~~~~~~~~~--~~~v----~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~ 258 (326)
T PF06723_consen 188 IREKY---NLLIGERTAEKIKIEIGSASPPEEEE--SMEV----RGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIK 258 (326)
T ss_dssp HHHHH---SEE--HHHHHHHHHHH-BSS--HHHH--EEEE----EEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh---CcccCHHHHHHHHHhcceeeccCCCc--eEEE----ECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 44444 23467889999999999987543222 1100 000111 1122222111 1110 1122235556666
Q ss_pred HHhcccChhHHHHhhhccCCccccccccceEEEeCCCCC
Q psy6341 351 ERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 351 e~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
+.+...-|+++.+.. ++ -|+||||+|-
T Consensus 259 ~~Le~~pPel~~DI~----------~~--GI~LtGGga~ 285 (326)
T PF06723_consen 259 EVLEKTPPELAADIL----------EN--GIVLTGGGAL 285 (326)
T ss_dssp HHHHTS-HHHHHHHH----------HH---EEEESGGGG
T ss_pred HHHHhCCHHHHHHHH----------HC--CEEEEChhhh
Confidence 666666665544443 22 3999999984
No 44
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=96.15 E-value=0.0019 Score=66.46 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=63.5
Q ss_pred HHHHHHhhhhcccccCChHHHHhhccCCCCcceeeEecCCCCCCCCCCCCCCCCceEEEeccccccccCCCCCCCCchhh
Q psy6341 21 LETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFFTQNFQFKSFLFSFSNPDFTTPISE 100 (465)
Q Consensus 21 ~~iv~~IKE~~CyVs~d~~~e~~~~~~~~~~~~~~y~LP~~~~~~DG~~~~~~~~~~I~l~~Erf~PEl~~~~~~~gL~e 100 (465)
...++.||++++++...-.++... ..--.+- +| .| ..+.++.+-...-+ .+. ...|.+
T Consensus 198 ~~tAE~iK~~~g~~~~~~~~~~~~--------v~Grd~~------tG-----lP-~~~~i~~~ev~~ai-~~~-~~~I~~ 255 (326)
T PF06723_consen 198 ERTAEKIKIEIGSASPPEEEESME--------VRGRDLI------TG-----LP-KSIEITSSEVREAI-EPP-VDQIVE 255 (326)
T ss_dssp HHHHHHHHHHH-BSS--HHHHEEE--------EEEEETT------TT-----CE-EEEEEEHHHHHHHH-HHH-HHHHHH
T ss_pred HHHHHHHHHhcceeeccCCCceEE--------EECcccc------CC-----Cc-EEEEEcHHHHHHHH-HHH-HHHHHH
Confidence 478999999999887443322100 0001111 23 11 56667643222100 011 246889
Q ss_pred hhhcccccCCcccccccccc-eEEecccccccchHHHHHHhhh
Q psy6341 101 IVDTVIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 101 lI~~sI~~c~~d~R~~L~~N-IVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.|.+++.++|+++..++++| |+|+||+++++||.++|++|+.
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~ 298 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETG 298 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC
Confidence 99999999999999998875 9999999999999999999884
No 45
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.76 E-value=0.34 Score=51.52 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=37.1
Q ss_pred cccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 214 VNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 214 ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
++.+.. ++|.-|+.-..+...++.++++...... .....+|||+|+++|.+.=+
T Consensus 168 ~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e---~~~gv~vvDiGggtTdisv~ 221 (420)
T PRK09472 168 AKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDE---RELGVCVVDIGGGTMDIAVY 221 (420)
T ss_pred HHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhh---hhcCeEEEEeCCCceEEEEE
Confidence 344444 5677888888888888877776522110 12457999999999999755
No 46
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=93.59 E-value=0.61 Score=49.66 Aligned_cols=143 Identities=20% Similarity=0.198 Sum_probs=77.0
Q ss_pred hhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec---------------hhhhh-cCCCCCC
Q psy6341 220 IMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV---------------SLLRE-REIGIPP 283 (465)
Q Consensus 220 llFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV---------------~lL~~-~~~~~~~ 283 (465)
-++|.-|+.=-.+..+++.|..+..... ......++||+|.++|++.=+ ..+++ -...+.
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~d---EkelGv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~~l~- 247 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTED---EKELGVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAKGLK- 247 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcc---cHhcCeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHHHhC-
Confidence 3556666655555666666665552211 134568999999999998755 11111 011111
Q ss_pred cCcHHHHHHHHHhcccccccHHHHHHHhhccccccCCCCCCCCeEEeccccccc--CCcccHHHHHHHHHHhcccChhHH
Q psy6341 284 EQSLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFVPILLRS--LPKQSLETAKAIKERYSYICPDIA 361 (465)
Q Consensus 284 ~~~~~iv~~IKE~lCyVs~Dy~~el~~~~~~~~~~l~~l~~~~eilF~P~~ig~--~~~~se~ia~~ike~~~~~~~D~~ 361 (465)
-.++.++.||.++..-.. +..+..+.+..|..... +.-....+++.|..++..++.=+.
T Consensus 248 -t~~~~AE~iK~~~g~a~~------------------~~~~~~~~i~v~~vg~~~~~~~t~~~ls~II~aR~~Ei~~lV~ 308 (418)
T COG0849 248 -TPFEEAERIKIKYGSALI------------------SLADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEEILELVK 308 (418)
T ss_pred -CCHHHHHHHHHHcCcccc------------------CcCCCcceEecccCCCcccchhhHHHHHHHHHhhHHHHHHHHH
Confidence 355678888877654322 12133344444443332 223333556666666666654445
Q ss_pred HHhhhccCCccccccccceEEEeCCCCC
Q psy6341 362 KEFAKYDADPGKWMRNSYSIVLTRPSAP 389 (465)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
+++.+...+ ...-+- ||||||+|-
T Consensus 309 ~~l~~~g~~-~~~~~g---vVlTGG~a~ 332 (418)
T COG0849 309 AELRKSGLP-NHLPGG---VVLTGGGAQ 332 (418)
T ss_pred HHHHHcCcc-ccCCCe---EEEECchhc
Confidence 555543332 334355 999999984
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=93.34 E-value=0.14 Score=52.34 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=42.9
Q ss_pred CCCccccccccccchhhhhhc--------cCcceEEeechhhhhhhcccccC-CccCCceeEEEEEcCCCeeEEeec
Q psy6341 204 GRPKKRWKDCVNQDLEIMFES--------FNVPGLYIAVQAVLALAASWKSR-PIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 204 Grp~~rW~d~ve~~~EllFE~--------f~vpsl~~~~~avLslya~~~~~-~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
|.|...+....+.+.+.+-.. +.|..+.+.+|++=+++...... ...+.....+|||+|+.+|.++-+
T Consensus 108 GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~ 184 (320)
T TIGR03739 108 GLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVA 184 (320)
T ss_pred CCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehc
Confidence 677776655555555544322 57778888888876665431111 011134567999999999999866
No 48
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.32 E-value=0.67 Score=48.19 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=33.9
Q ss_pred hhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
+++.-|+.-..+...++.++++..... . .....+|||+|+++|+++.+
T Consensus 166 ~~~~aGl~~~~i~~~~~A~a~a~~~~~-~--~~~~~~vvDiG~gtt~i~i~ 213 (371)
T TIGR01174 166 CVERCGLEVDNIVLSGLASAIAVLTED-E--KELGVCLIDIGGGTTDIAVY 213 (371)
T ss_pred HHHHcCCCeeeEEEhhhhhhhhhcCcc-h--hcCCEEEEEeCCCcEEEEEE
Confidence 567778887777778777776642110 1 22357999999999999887
No 49
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=92.84 E-value=0.66 Score=45.54 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=32.7
Q ss_pred hhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.++.-|+.-+.+...++.+..+. +....+|||+|+++|.+.=+
T Consensus 83 a~~~aGl~~~~li~ep~Aaa~~~--------~~~~~~vvDiGggtt~i~i~ 125 (239)
T TIGR02529 83 VIESAGIEVLHVLDEPTAAAAVL--------QIKNGAVVDVGGGTTGISIL 125 (239)
T ss_pred HHHHcCCceEEEeehHHHHHHHh--------cCCCcEEEEeCCCcEEEEEE
Confidence 45667888888888888777665 23346999999999987644
No 50
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=91.25 E-value=0.5 Score=48.43 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=50.3
Q ss_pred hhccCcceEEeechhhhhhhcccccCCccCCcee-EEEEEcCCCeeEEeec--------------------hhhhhcCCC
Q psy6341 222 FESFNVPGLYIAVQAVLALAASWKSRPIEERTLT-GIVVDSGDGVTHVIPV--------------------SLLREREIG 280 (465)
Q Consensus 222 FE~f~vpsl~~~~~avLslya~~~~~~~~~g~~t-gLVVD~G~s~T~VvPV--------------------~lL~~~~~~ 280 (465)
-|.-+...+|+..-+..++.... .+. ...+ ..|||+|.++|.|.=+ .++..-...
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGag--lpi--~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~ 199 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAG--LPI--MEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKK 199 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCC--Ccc--cCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHH
Confidence 34466677788888877777651 111 2233 7999999999997655 111111122
Q ss_pred CCCcCcHHHHHHHHHhccccccc
Q psy6341 281 IPPEQSLETAKAIKERYSYICPD 303 (465)
Q Consensus 281 ~~~~~~~~iv~~IKE~lCyVs~D 303 (465)
++.......+++||.+.+++.++
T Consensus 200 ~nl~IGe~taE~iK~eiG~a~~~ 222 (342)
T COG1077 200 YNLLIGERTAEKIKIEIGSAYPE 222 (342)
T ss_pred hCeeecHHHHHHHHHHhcccccc
Confidence 34446677799999999888764
No 51
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=90.39 E-value=0.11 Score=53.07 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=51.9
Q ss_pred eEEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccc-eEEecccccccchHHHHHHhhh
Q psy6341 76 FTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 76 ~~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~N-IVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
..+.++.+..++.+-. . ..+|.+.|...+.+||+++-.+.+.+ |+|+||.+++.||.+.|..|..
T Consensus 243 k~i~i~s~ev~eal~~-~-v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~ 308 (342)
T COG1077 243 KTITINSEEIAEALEE-P-LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETG 308 (342)
T ss_pred eeEEEcHHHHHHHHHH-H-HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccC
Confidence 5777766655522111 1 24788999999999999999999999 9999999999999999998774
No 52
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=89.58 E-value=1.9 Score=43.04 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=29.6
Q ss_pred hhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 220 IMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 220 llFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
-..|.-|+.-..+...+..+..+. +...++|||+|+++|.+.=+
T Consensus 109 ~~~~~aGl~~~~ii~e~~A~a~~~--------~~~~~~vvDIGggtt~i~v~ 152 (267)
T PRK15080 109 NVVESAGLEVTHVLDEPTAAAAVL--------GIDNGAVVDIGGGTTGISIL 152 (267)
T ss_pred HHHHHcCCceEEEechHHHHHHHh--------CCCCcEEEEeCCCcEEEEEE
Confidence 455667777666666665555543 22337999999999997644
No 53
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=88.42 E-value=1.3 Score=45.96 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=30.8
Q ss_pred cCcceEEeechhhhhhhcccccCCc-----cCCceeEEEEEcCCCeeEEeec
Q psy6341 225 FNVPGLYIAVQAVLALAASWKSRPI-----EERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 225 f~vpsl~~~~~avLslya~~~~~~~-----~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.+|..+.+.+|++-++|........ .......+|||+|+.+|.++-+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~ 202 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTI 202 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEE
Confidence 4567788888888777643111110 0012356999999999999876
No 54
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=87.99 E-value=0.34 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=21.8
Q ss_pred cceEEecccccccchHHHHHHhhh
Q psy6341 119 HNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 119 ~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
..|+|+||+|++||+.+.|++++.
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg 219 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLG 219 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhC
Confidence 479999999999999999998774
No 55
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=85.44 E-value=2.5 Score=43.27 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.3
Q ss_pred eEEEEEcCCCeeEEeec
Q psy6341 255 TGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 255 tgLVVD~G~s~T~VvPV 271 (465)
+.++||+|+++|+++-+
T Consensus 189 ~~~lvdiG~~~t~l~i~ 205 (348)
T TIGR01175 189 DAALVDIGATSSTLNLL 205 (348)
T ss_pred eEEEEEECCCcEEEEEE
Confidence 48999999999999866
No 56
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=82.36 E-value=0.63 Score=46.39 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred cccceEEecccccccchHHHHHHhhh
Q psy6341 117 LYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 117 L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
-.+.|+|+||+|++||+.+.+.+.+.
T Consensus 221 ~~~~IvLtGG~s~lpgl~e~l~~~lg 246 (267)
T PRK15080 221 DVEDIYLVGGTCCLPGFEEVFEKQTG 246 (267)
T ss_pred CCCEEEEECCcccchhHHHHHHHHhC
Confidence 44699999999999999999998874
No 57
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=76.12 E-value=1.7 Score=45.17 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred hhhhhh-cccccCCcccccccccceEEecccccccchHHHHHHhhhh
Q psy6341 98 ISEIVD-TVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKR 143 (465)
Q Consensus 98 L~elI~-~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~~ 143 (465)
+-+.|. +.+.+...+ ..+-+.|+|+||+|.+||+.+.+.+.+..
T Consensus 296 i~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 296 ILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 444454 555544433 33434499999999999999999987754
No 58
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=75.46 E-value=4.5 Score=41.31 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=30.2
Q ss_pred ccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 224 SFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 224 ~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.+++-.+.+-+|++-|+|..... .......||||+|+.+|.++-|
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~---~~~~~~~lVVDIGG~T~Dv~~v 181 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMD---LDEDESVLVVDIGGRTTDVAVV 181 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHT---S-TTSEEEEEEE-SS-EEEEEE
T ss_pred eEEEeeEEEEcccHHHHHHHHHh---hcccCcEEEEEcCCCeEEeeee
Confidence 46678888889988887765211 1123568999999999999877
No 59
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=75.24 E-value=14 Score=41.38 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=36.4
Q ss_pred cchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 216 QDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 216 ~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
+...-..+.-|+.-+.+.+.++.|++++..... ....-||+|+|.+++.|.=+
T Consensus 158 ~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGGGT~DvSi~ 210 (595)
T PRK01433 158 GEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN---QKGCYLVYDLGGGTFDVSIL 210 (595)
T ss_pred HHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC---CCCEEEEEECCCCcEEEEEE
Confidence 333445666788888888888887776622211 23467999999999998765
No 60
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=74.73 E-value=20 Score=40.10 Aligned_cols=51 Identities=16% Similarity=-0.025 Sum_probs=35.0
Q ss_pred hhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 218 LEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 218 ~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
..-..+.-|+.-+.+.+.++.|+++...... ....-+|+|+|++++.|.=+
T Consensus 148 ~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGgGT~DvSi~ 198 (599)
T TIGR01991 148 TKDAARLAGLNVLRLLNEPTAAAVAYGLDKA---SEGIYAVYDLGGGTFDVSIL 198 (599)
T ss_pred HHHHHHHcCCCceEEecCHHHHHHHHhhccC---CCCEEEEEEcCCCeEEEEEE
Confidence 3344566788877788887777655421111 34578999999999998755
No 61
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=74.59 E-value=1.4 Score=46.86 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=32.2
Q ss_pred hhhhhhcccccCCcccc-----cccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVR-----RPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R-----~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
|-++|.+++..++..++ ..+-+.|||+||++.+||+.+.+.+-+.
T Consensus 304 i~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~ 353 (420)
T PRK09472 304 LLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH 353 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC
Confidence 44455555555554443 3466779999999999999998887665
No 62
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=70.44 E-value=36 Score=38.13 Aligned_cols=52 Identities=13% Similarity=-0.053 Sum_probs=36.8
Q ss_pred chhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 217 DLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 217 ~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
...-..+.-|+.-+.+.+.++.|++++..... ....-+|+|+|.+++.|.-+
T Consensus 167 a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGGGT~DvSv~ 218 (616)
T PRK05183 167 ATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG---QEGVIAVYDLGGGTFDISIL 218 (616)
T ss_pred HHHHHHHHcCCCeEEEecchHHHHHHhhcccC---CCCEEEEEECCCCeEEEEEE
Confidence 33445666788888888888888765522111 23568999999999998766
No 63
>PRK13410 molecular chaperone DnaK; Provisional
Probab=67.66 E-value=40 Score=38.26 Aligned_cols=48 Identities=21% Similarity=0.044 Sum_probs=33.1
Q ss_pred hhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
..+.-|+.-+.+.+.++.|+.++..... ....-+|+|+|++++.|.=+
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~~---~~~~vlV~DlGgGT~Dvsv~ 204 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDRS---SSQTVLVFDLGGGTFDVSLL 204 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccC---CCCEEEEEECCCCeEEEEEE
Confidence 3455677777777777777665522111 23578999999999999766
No 64
>CHL00094 dnaK heat shock protein 70
Probab=66.88 E-value=21 Score=40.01 Aligned_cols=47 Identities=21% Similarity=0.069 Sum_probs=32.8
Q ss_pred hhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 222 FESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 222 FE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.+.-|+.-+.+.+.++.|+.++.... .....-+|+|+|++++.|.=+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDK---KNNETILVFDLGGGTFDVSIL 204 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhcccc---CCCCEEEEEEcCCCeEEEEEE
Confidence 34557777778888877776652211 123568999999999999765
No 65
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=65.48 E-value=31 Score=37.95 Aligned_cols=60 Identities=27% Similarity=0.141 Sum_probs=36.7
Q ss_pred cccccccchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 210 WKDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 210 W~d~ve~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
|-+.-++...-..+.-|+.-+.+..-++.|+.++...... ...+-||+|+|++++.+.=+
T Consensus 146 ~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~--~~~~vlv~D~Gggt~dvs~~ 205 (602)
T PF00012_consen 146 FTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD--KGKTVLVVDFGGGTFDVSVV 205 (602)
T ss_dssp --HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS--SEEEEEEEEEESSEEEEEEE
T ss_pred hhhhhhhcccccccccccccceeecccccccccccccccc--cccceeccccccceEeeeeh
Confidence 4333344444556667777777777777666543111111 35789999999999988866
No 66
>CHL00094 dnaK heat shock protein 70
Probab=65.17 E-value=2.6 Score=47.12 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=29.5
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+.+.|.+++.+.. +...-...|+|+||+|.+|++.+.|.+.+.
T Consensus 311 ~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg 353 (621)
T CHL00094 311 CRIPVENALKDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLG 353 (621)
T ss_pred HHHHHHHHHHHcC--CChhhCcEEEEECCccCChHHHHHHHHHhC
Confidence 3344445554432 233345899999999999999999986653
No 67
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=64.51 E-value=67 Score=36.29 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=34.0
Q ss_pred hhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 219 EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.-..+.-|+.-+.+.+.++.|++++..... ..+...-+|+|+|++++.|.=+
T Consensus 160 ~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~~vlv~D~GggT~dvsv~ 211 (653)
T PTZ00009 160 KDAGTIAGLNVLRIINEPTAAAIAYGLDKK-GDGEKNVLIFDLGGGTFDVSLL 211 (653)
T ss_pred HHHHHHcCCceeEEecchHHHHHHHhhhcc-CCCCCEEEEEECCCCeEEEEEE
Confidence 335556677777777777776665421111 0124578999999999998755
No 68
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=64.17 E-value=65 Score=35.80 Aligned_cols=49 Identities=18% Similarity=0.067 Sum_probs=33.2
Q ss_pred hhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
..+.-|+.-+.+.+.++.|++++..... .....-+|+|+|++++.|.-+
T Consensus 152 Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 152 AGKIAGLEVLRIINEPTAAALAYGLDKS--KKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred HHHHcCCceEEEecchHHHHHHHhhccc--CCCcEEEEEECCCCeEEEEEE
Confidence 4455677777777777777665421111 134678999999999998765
No 69
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=57.72 E-value=28 Score=39.46 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=35.3
Q ss_pred cchhhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 216 QDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 216 ~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
+.+.-..+.-|+.-+-+.+.++.|+.++..... ....-+|+|+|.+++.|.=+
T Consensus 177 ~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~---~~~~vlV~DlGGGT~DvSil 229 (657)
T PTZ00186 177 QATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT---KDSLIAVYDLGGGTFDISVL 229 (657)
T ss_pred HHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC---CCCEEEEEECCCCeEEEEEE
Confidence 333444556677777777777777765522111 23578999999999998755
No 70
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=55.96 E-value=18 Score=37.06 Aligned_cols=51 Identities=29% Similarity=0.330 Sum_probs=25.3
Q ss_pred hhhccCcceEEeech--hhhhhhcccccC-CccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQ--AVLALAASWKSR-PIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~--avLslya~~~~~-~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
+|+.-|+.-..+-.+ |+.-+|...... +......+-++||+|++.|+++=+
T Consensus 144 ~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~ 197 (340)
T PF11104_consen 144 LFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIF 197 (340)
T ss_dssp HHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEE
T ss_pred HHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEE
Confidence 577788766555443 333344331000 000122467899999999999755
No 71
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=55.82 E-value=4.5 Score=45.25 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=30.1
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDI 141 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL 141 (465)
+-+.|.++|...... ..-...|+|+||+|.+|.+.++|...+
T Consensus 309 ~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~f 350 (627)
T PRK00290 309 TIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFF 350 (627)
T ss_pred HHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHh
Confidence 445555555554332 233589999999999999999998665
No 72
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=54.72 E-value=37 Score=38.03 Aligned_cols=49 Identities=18% Similarity=0.005 Sum_probs=34.0
Q ss_pred hhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 220 IMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 220 llFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
-..+.-|+.-+.+.+.++.|++++.... ......+|+|+|.+++.|.-+
T Consensus 154 ~Aa~~AGl~v~~li~EptAAAl~y~~~~---~~~~~vlV~D~GggT~dvsv~ 202 (627)
T PRK00290 154 DAGKIAGLEVLRIINEPTAAALAYGLDK---KGDEKILVYDLGGGTFDVSIL 202 (627)
T ss_pred HHHHHcCCceEEEecchHHHHHHhhhcc---CCCCEEEEEECCCCeEEEEEE
Confidence 3445567777777777777766542211 134679999999999998766
No 73
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.42 E-value=39 Score=38.36 Aligned_cols=50 Identities=20% Similarity=0.018 Sum_probs=35.3
Q ss_pred hhhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 219 EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
.-..+.-|+.-+.+.+.++.|++++..... ....-+|+|+|.+++.|.-+
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~~---~~~~vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEKK---SNETILVFDLGGGTFDVSVL 241 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhcccC---CCCEEEEEECCCCeEEEEEE
Confidence 345566688888888888887765522111 23578999999999998765
No 74
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=53.53 E-value=4.4 Score=44.99 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=37.4
Q ss_pred EEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 77 TQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 77 ~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.+.|..+.|. +++.+- ...+.++|.+++..... ...-...|+|+||+|.+|++.+.|.+.+.
T Consensus 288 ~~~itr~~fe-~l~~~l-~~~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~~~f~ 349 (595)
T TIGR02350 288 EMTLTRAKFE-ELTADL-VERTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVKDFFG 349 (595)
T ss_pred EEEEeHHHHH-HHHHHH-HHHHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHHHHhC
Confidence 4556666555 011111 12344555555554432 23335899999999999999999986553
No 75
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=53.17 E-value=8.1 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.734 Sum_probs=27.7
Q ss_pred CCCCCcccccccccccccCCCcccCCCCCCc
Q psy6341 410 PACKPSVIPTTCKGTRFGSGVPCWHPPPNSM 440 (465)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (465)
.+|+-+--..||||.-|--.|-=|.|-|...
T Consensus 13 a~CqT~D~lAtckGpiFpLNVgrWqptpsDL 43 (55)
T PRK13859 13 AGCQTNDTLASCKGPIFPLNVGRWQPTPSDL 43 (55)
T ss_pred HhccccCccccccCCccccccccccCChhhc
Confidence 4799999999999999999999999998754
No 76
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=52.97 E-value=5.7 Score=39.79 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.4
Q ss_pred cceEEecccccccchHHHHHHhhhh
Q psy6341 119 HNIVLSGGSTMFRDFGRRLQRDIKR 143 (465)
Q Consensus 119 ~NIVLsGGsSl~~Gf~eRL~~EL~~ 143 (465)
.+|+++||.+.-+++.+.|+++|..
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~ 237 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQE 237 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhcc
Confidence 4799999999999999999998853
No 77
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=52.33 E-value=10 Score=38.92 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=23.0
Q ss_pred ccccceEEecccccccchHHHHHHhhhh
Q psy6341 116 PLYHNIVLSGGSTMFRDFGRRLQRDIKR 143 (465)
Q Consensus 116 ~L~~NIVLsGGsSl~~Gf~eRL~~EL~~ 143 (465)
.-.+.|+|+||.+.++|+.+-|..+|.-
T Consensus 273 ~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 273 ESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp ---SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred CCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 3457899999999999999999988854
No 78
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=50.81 E-value=8.9 Score=43.34 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=37.5
Q ss_pred EEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 77 TQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 77 ~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.+.++.+.|. +++.+- ...+-+.|.+++.++. +...-...|+|+||+|.+|++.+.|.+.+.
T Consensus 331 ~~~itR~efe-~l~~~l-~~~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~f~ 392 (663)
T PTZ00400 331 QIKLSRAKLE-ELTHDL-LKKTIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETVKKIFG 392 (663)
T ss_pred EEEECHHHHH-HHHHHH-HHHHHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHHHHHhC
Confidence 4556666555 011110 1234455555555543 223335889999999999999999986653
No 79
>PRK11678 putative chaperone; Provisional
Probab=50.60 E-value=9.4 Score=41.13 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred eEEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhh
Q psy6341 76 FTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDI 141 (465)
Q Consensus 76 ~~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL 141 (465)
..+.++.+.|. +++.+- ..-+-++|.+++...... ...|+|+||+|.+|++.+.+.+.+
T Consensus 365 ~~~~ItR~efe-~ii~~~-l~ri~~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~~~f 423 (450)
T PRK11678 365 LATEISQQGLE-EAISQP-LARILELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALAQQL 423 (450)
T ss_pred cceeeCHHHHH-HHHHHH-HHHHHHHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHHHHC
Confidence 34555555554 111111 123445555555444322 257999999999999999988655
No 80
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=47.27 E-value=14 Score=37.74 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=23.9
Q ss_pred cccceEEecccccccchHHHHHHhhhh
Q psy6341 117 LYHNIVLSGGSTMFRDFGRRLQRDIKR 143 (465)
Q Consensus 117 L~~NIVLsGGsSl~~Gf~eRL~~EL~~ 143 (465)
..+.|+|+||.+.++||.+-|.+++.-
T Consensus 282 ~i~~I~LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 282 SLDGLVLAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred ccceEEEECccccchhHHHHHHHHHCC
Confidence 467899999999999999999988863
No 81
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=43.63 E-value=10 Score=37.48 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=31.0
Q ss_pred eEEecccccccchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecccccceeeeecccccC
Q psy6341 121 IVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGHVERR 183 (465)
Q Consensus 121 IVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~~r~~~~aWiGgSilA 183 (465)
|+|+||...-..+.+.|.+.|++.++. ..+.+...| .+.+..|+.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~------------~~~~~~~~~---~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPK------------VPIIIPVEP---QYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHC------------CTCECECCG---SSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCC------------CceEECCCC---CccHHHHHHHhC
Confidence 999999887777777777777665442 112222222 678888988775
No 82
>PRK13411 molecular chaperone DnaK; Provisional
Probab=42.28 E-value=15 Score=41.49 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=38.1
Q ss_pred EEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 77 TQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 77 ~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.+.|+.+.|. +++.+- ...+-++|.+++.... +...-...|+|+||+|.+|.+.++|.+.+.
T Consensus 291 ~~~itR~~fe-~l~~~l-~~~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~ 352 (653)
T PRK13411 291 EMELTRAKFE-ELTKDL-VEATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFG 352 (653)
T ss_pred EEEEcHHHHH-HHHHHH-HHHHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcC
Confidence 4555666555 011111 1234455556565443 333445899999999999999999987663
No 83
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=41.61 E-value=1.6e+02 Score=30.10 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=39.0
Q ss_pred ccchhhhhhccCcceEEeechhhhhhhcccccCCccCCc-eeEEEEEcCCCeeEEeec
Q psy6341 215 NQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERT-LTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 215 e~~~EllFE~f~vpsl~~~~~avLslya~~~~~~~~~g~-~tgLVVD~G~s~T~VvPV 271 (465)
+.+++.+=+.+|++.---+.-+-++.....+-+ |. .--.|+|+|.++|...=|
T Consensus 98 ~~iA~~l~~~lgv~V~igGvEAemAi~GALTTP----Gt~~PlaIlDmG~GSTDAsii 151 (332)
T PF08841_consen 98 QMIADELEEELGVPVEIGGVEAEMAILGALTTP----GTDKPLAILDMGGGSTDASII 151 (332)
T ss_dssp HHHHHHHHHHHTSEEEEECEHHHHHHHHHTTST----T--SSEEEEEE-SSEEEEEEE
T ss_pred HHHHHHHHHHHCCceEEccccHHHHHhcccCCC----CCCCCeEEEecCCCcccHHHh
Confidence 667889999999999999998888877653211 32 234688999999996544
No 84
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=39.55 E-value=56 Score=36.48 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=38.2
Q ss_pred hhhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 220 IMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 220 llFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
-...--|++-+.+.+-++.|+|++..+.. ....-||+|+|.+++.+.=|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~---~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG---KEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC---CCcEEEEEEcCCCCEEEEEE
Confidence 45666888889999999999888732211 34689999999999999866
No 85
>PLN03184 chloroplast Hsp70; Provisional
Probab=36.71 E-value=21 Score=40.45 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=30.4
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+.+.|.++|.....+. .=...|+|+||+|.+|.+.++|.+.+.
T Consensus 348 ~~~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg 390 (673)
T PLN03184 348 CKTPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTG 390 (673)
T ss_pred HHHHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhC
Confidence 4445555555544332 234899999999999999999987663
No 86
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=35.57 E-value=26 Score=39.13 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.7
Q ss_pred ccceEEecccccccchHHHHHHhh
Q psy6341 118 YHNIVLSGGSTMFRDFGRRLQRDI 141 (465)
Q Consensus 118 ~~NIVLsGGsSl~~Gf~eRL~~EL 141 (465)
...|+|+||+|.+|.+.+.|.+.+
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f 332 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAF 332 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHh
Confidence 489999999999999999998665
No 87
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=35.49 E-value=24 Score=39.36 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=30.3
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+-+.|.+++.... +...-...|+|+||+|.+|++.+.|.+.+.
T Consensus 295 i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~ 337 (599)
T TIGR01991 295 TLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFG 337 (599)
T ss_pred HHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhC
Confidence 4455555555432 223345899999999999999999987653
No 88
>PHA03141 helicase-primase primase subunit; Provisional
Probab=34.15 E-value=27 Score=29.81 Aligned_cols=20 Identities=35% Similarity=0.964 Sum_probs=16.4
Q ss_pred cccccccccc----cCCCcccCCC
Q psy6341 417 IPTTCKGTRF----GSGVPCWHPP 436 (465)
Q Consensus 417 ~~~~~~~~~~----~~~~~~~~~~ 436 (465)
+|+.|-|++- ++|--|||+-
T Consensus 30 lP~DCL~P~~fi~T~~Gp~cW~~~ 53 (101)
T PHA03141 30 IPSDCLAPTLFLLTTEGPVCWHQK 53 (101)
T ss_pred CCccccCCceEEEeCCcceEecCC
Confidence 7888888763 7999999985
No 89
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=32.24 E-value=1.2e+02 Score=29.08 Aligned_cols=78 Identities=32% Similarity=0.655 Sum_probs=46.2
Q ss_pred CccccccccceEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc----------cccccccC----CCcccCC
Q psy6341 370 DPGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTT----------CKGTRFGS----GVPCWHP 435 (465)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~~ 435 (465)
|.+.|+.. .||+-+||- |-....+++--.||||+|...--|-. |.|..--- |---|-|
T Consensus 126 ~~qawvea--avvvHRgsd------e~ege~~~tqs~p~p~~~pqg~APLASfqddlD~gSsegsSp~pSPp~~eep~~p 197 (224)
T PF15462_consen 126 DAQAWVEA--AVVVHRGSD------EDEGERSPTQSRPGPPACPQGPAPLASFQDDLDMGSSEGSSPNPSPPEGEEPHPP 197 (224)
T ss_pred chhhhhhh--eeeeecCCc------cccCccccccCCCCCCCCCCCCcccccchhhccccccCCCCCCCCCCcccCCCCC
Confidence 44678866 578877764 33333445566789999987766642 33321100 0001222
Q ss_pred --CCCCcccccccccccccceeeeec
Q psy6341 436 --PPNSMRCAIPRRHMRSMDLAFVDT 459 (465)
Q Consensus 436 --~~~~~~~~~~~~~~~~~~~~~~~~ 459 (465)
-|+..||.++|-| |+|++|+
T Consensus 198 ~~~p~a~r~~ld~f~----DfALIDa 219 (224)
T PF15462_consen 198 PQEPWACRCQLDRFH----DFALIDA 219 (224)
T ss_pred CCCcccccCCccccc----cceeecc
Confidence 2457788888766 9999995
No 90
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=32.03 E-value=30 Score=38.76 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=28.8
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+.+.+.+++.+.. +...-...|+|+||+|.+|.+.+.|.+.+.
T Consensus 311 ~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg 353 (616)
T PRK05183 311 TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFG 353 (616)
T ss_pred HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhc
Confidence 3344444444332 222335789999999999999999986553
No 91
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=31.56 E-value=31 Score=27.71 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCC
Q psy6341 399 NTTPPGIEPGPPAC 412 (465)
Q Consensus 399 ~~~~~~~~~~~~~~ 412 (465)
+.++||.+||+|+|
T Consensus 59 ~~~~~g~~Pgt~~~ 72 (72)
T PF07935_consen 59 QWGRPGFEPGTPGS 72 (72)
T ss_pred cCCCCCCCCCCCCC
Confidence 45778999999987
No 92
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=26.97 E-value=40 Score=38.18 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=29.8
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+-+.+.+++..... ...-...|+|+||+|.+|.+.+.|.+.+.
T Consensus 336 ~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~~~fg 378 (657)
T PTZ00186 336 SIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVKKFFQ 378 (657)
T ss_pred HHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHHHHhC
Confidence 33444555544332 23345789999999999999999987664
No 93
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.44 E-value=22 Score=36.19 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.3
Q ss_pred chhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 97 PISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 97 gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
||++.|.+-+... --|..+-..|+++||.+.-+|+.+.|+++|.
T Consensus 221 Gl~~sia~rv~~~--~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg 264 (293)
T TIGR03192 221 AYCQAMAERVVSL--LERIGVEEGFFITGGIAKNPGVVKRIERILG 264 (293)
T ss_pred HHHHHHHHHHHHH--hcccCCCCCEEEECcccccHHHHHHHHHHhC
Confidence 4555444433221 1134566789999999999999999998874
No 94
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=26.21 E-value=40 Score=38.05 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=37.1
Q ss_pred eEEEecccccc---ccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhh
Q psy6341 76 FTQNFQFKSFL---FSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDI 141 (465)
Q Consensus 76 ~~I~l~~Erf~---PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL 141 (465)
..+.|..+.|. -+++ ..+-+.|.++|..+..+ ..-...|+|+||+|.+|.+.+.|.+.+
T Consensus 295 ~~~~itR~~fe~l~~~l~-----~~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i~~~f 356 (653)
T PTZ00009 295 YNVTISRARFEELCGDYF-----RNTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLIKDFF 356 (653)
T ss_pred EEEEECHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHHHHHh
Confidence 34566666665 1111 12334455555554433 233579999999999999999998655
No 95
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=25.99 E-value=43 Score=36.79 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEeccccccccCCCCCCCCchhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 77 TQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 77 ~I~l~~Erf~PEl~~~~~~~gL~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.+.|..+.|. +++.+- ...+.++|.+++..+... ..=...|+|+||+|.+|.+.+.|.+.+.
T Consensus 292 ~~~itr~~fe-~l~~~~-~~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~ 353 (602)
T PF00012_consen 292 SITITREEFE-ELCEPL-LERIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG 353 (602)
T ss_dssp EEEEEHHHHH-HHTHHH-HHHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred ccccccceec-cccccc-cccccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc
Confidence 5566666655 111111 124555666666554332 3334789999999999999999987664
No 96
>PRK13410 molecular chaperone DnaK; Provisional
Probab=25.41 E-value=42 Score=38.11 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=29.7
Q ss_pred hhhhhhcccccCCcccccccccceEEecccccccchHHHHHHhhh
Q psy6341 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 98 L~elI~~sI~~c~~d~R~~L~~NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
+.++|.+++... .+...-...|+|+||+|.+|.+.+.|.+.+.
T Consensus 311 ~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg 353 (668)
T PRK13410 311 LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353 (668)
T ss_pred HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcC
Confidence 444555555433 2233445799999999999999999986553
No 97
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=24.54 E-value=32 Score=36.62 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=35.1
Q ss_pred ccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecccccceeeeecccccCC
Q psy6341 116 PLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGHVERRD 184 (465)
Q Consensus 116 ~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~~r~~~~aWiGgSilAs 184 (465)
.+-+.|+++||.+..+|+.+.|.+.|.. +++-+++. .+..=+|++++|+
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~Lg~-------------------~iivPe~p-q~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLLGI-------------------EVVVPEYS-QYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHhCC-------------------cEEECCcc-cHHHHHHHHHHhc
Confidence 4555699999999999999999877742 12223333 6777788888874
No 98
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.37 E-value=3.5e+02 Score=28.32 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=13.4
Q ss_pred EEEEEcCCCeeEEeec
Q psy6341 256 GIVVDSGDGVTHVIPV 271 (465)
Q Consensus 256 gLVVD~G~s~T~VvPV 271 (465)
.+|+|+|++.|.+.=+
T Consensus 195 vav~~Igat~s~l~vi 210 (354)
T COG4972 195 VAVFDIGATSSELLVI 210 (354)
T ss_pred heeeeecccceEEEEE
Confidence 4699999999998755
No 99
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=22.96 E-value=48 Score=35.54 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred cccccceEEecccccccchHHHHH
Q psy6341 115 RPLYHNIVLSGGSTMFRDFGRRLQ 138 (465)
Q Consensus 115 ~~L~~NIVLsGGsSl~~Gf~eRL~ 138 (465)
..+-+.|||+||.+.++|..+=..
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~ 341 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAE 341 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHH
Confidence 677789999999999999987443
No 100
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=22.93 E-value=44 Score=35.72 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=36.2
Q ss_pred ccccceEEecccccccchHHHHHHhhhhhhhhhhhhhccccCccceeeeeecccccceeeeecccccC
Q psy6341 116 PLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGHVERR 183 (465)
Q Consensus 116 ~L~~NIVLsGGsSl~~Gf~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~v~~~~~r~~~~aWiGgSilA 183 (465)
.+-..|+++||.+.-+||.+.|.+.|..-.. ..+++-+++. ++..=+|++++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~--------------~~~V~Vp~~p-q~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG--------------EVQINIDPDS-IYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccC--------------CCeEecCCCc-cHHHHHHHHHhC
Confidence 4557999999999999999999988854211 1223334443 666667777664
No 101
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=22.76 E-value=60 Score=31.69 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEecccccccchHHHHHHhhh
Q psy6341 120 NIVLSGGSTMFRDFGRRLQRDIK 142 (465)
Q Consensus 120 NIVLsGGsSl~~Gf~eRL~~EL~ 142 (465)
.|+++||.+..+++.++|.+.+.
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg 228 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG 228 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC
Confidence 79999999999999999987773
No 102
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.62 E-value=65 Score=32.52 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.1
Q ss_pred CceeEEEEEcCCCeeEEeec
Q psy6341 252 RTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 252 g~~tgLVVD~G~s~T~VvPV 271 (465)
+..++|+||+|.++|.|.+|
T Consensus 75 g~~~~i~vDmGGTTtDi~~i 94 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALI 94 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEE
T ss_pred CCCCEEEEeCCCCEEEEEEE
Confidence 66789999999999999999
No 103
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.70 E-value=63 Score=32.60 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=17.2
Q ss_pred eeEEEEEcCCCeeEEeec
Q psy6341 254 LTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 254 ~tgLVVD~G~s~T~VvPV 271 (465)
.++|.||+|..+|.++||
T Consensus 130 dsci~VD~GSTTtDIIPi 147 (330)
T COG1548 130 DSCILVDMGSTTTDIIPI 147 (330)
T ss_pred CceEEEecCCcccceEee
Confidence 579999999999999999
No 104
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=20.35 E-value=76 Score=30.96 Aligned_cols=43 Identities=28% Similarity=0.230 Sum_probs=33.8
Q ss_pred hhhccCcceEEeechhhhhhhcccccCCccCCceeEEEEEcCCCeeEEeec
Q psy6341 221 MFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271 (465)
Q Consensus 221 lFE~f~vpsl~~~~~avLslya~~~~~~~~~g~~tgLVVD~G~s~T~VvPV 271 (465)
+.|.-|...++...-+..+.+-- +...|.|||+|.++|-|.-+
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL--------~l~dg~VVDiGGGTTGIsi~ 157 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVL--------QLDDGGVVDIGGGTTGISIV 157 (277)
T ss_pred eecccCceeeeecCCchhHHHHh--------ccCCCcEEEeCCCcceeEEE
Confidence 46777777777777777776665 66889999999999988766
Done!