RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6341
(465 letters)
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 190 bits (484), Expect = 9e-56
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 22/188 (11%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
+I +LRER IP E L A+ IKE+Y Y+ PDIAKEF KYD+DP +
Sbjct: 200 FIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFK-------- 251
Query: 63 WKKSPSDRPSIPFFTQNFQFKSFL-----FS--FSNPDFTTPISEIVDTVIQNCPIDVRR 115
K + + + +T + ++ FL F + ++TTP+ E+VD IQ+CPID RR
Sbjct: 252 -KYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRR 310
Query: 116 PLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIK-----VTEVSRKFQ 170
PLY NIVLSGGSTMF+ F +RLQRD+++ VD RLK +E LSGG +K V VS Q
Sbjct: 311 PLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQ 370
Query: 171 GRRLHWYG 178
R WYG
Sbjct: 371 -RYAVWYG 377
Score = 154 bits (390), Expect = 4e-42
Identities = 65/123 (52%), Positives = 74/123 (60%), Gaps = 27/123 (21%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEER--TLTGIVVDSGDGVTHVIPVS---- 272
EIMFE+FNV GLYIAVQAVLAL ASW S+ +E TLTG V+DSGDGVTHVIPV
Sbjct: 123 EIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYV 182
Query: 273 ---------------------LLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKY 311
+LRER IP E L A+ IKE+Y Y+ PDIAKEF KY
Sbjct: 183 IGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKY 242
Query: 312 VRN 314
+
Sbjct: 243 DSD 245
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 110 bits (278), Expect = 7e-27
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 7 LLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKS 66
LL ER E + IKE+ Y+ D KE Y +
Sbjct: 187 LLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKTY------EL 240
Query: 67 PSDRPSIPFFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLS 124
P +I + F+ LF + I E+V IQ C IDVR+ LY NIVLS
Sbjct: 241 PDGN-TIKVGNERFRIPEILFSPELIGLE-QKGIHELVYESIQKCDIDVRKDLYENIVLS 298
Query: 125 GGSTMFRDFGRRLQRDIKRVVDARLKLS 152
GGST+ FG RL++++K++ +LK+
Sbjct: 299 GGSTLIPGFGERLEKELKQLAPKKLKVK 326
Score = 106 bits (266), Expect = 3e-25
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 33/123 (26%)
Query: 218 LEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------ 271
LEIMFE+FN P LYIA+QAVL+L AS ++ TG+V+DSGDGVTHV+PV
Sbjct: 115 LEIMFETFNFPALYIAIQAVLSLYASGRT--------TGLVIDSGDGVTHVVPVVDGYVL 166
Query: 272 -------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYV 312
LL ER E + IKE+ Y+ D KE
Sbjct: 167 PHAIKRIDIAGRDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLAR 226
Query: 313 RNK 315
+
Sbjct: 227 ESS 229
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 76.5 bits (189), Expect = 4e-15
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 35/187 (18%)
Query: 4 ILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSW 63
+ LL R E + IKE Y+ D + A + P + P
Sbjct: 182 LRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTV----SYELP--- 234
Query: 64 KKSPSDRPSIPFFTQNFQFKSFLFSFSNPDFTTP-ISEIVDTVIQNCPIDVRRPLYHNIV 122
D I + F+ LF+ S + I E++ I C +D+R L NIV
Sbjct: 235 -----DGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIV 289
Query: 123 LSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGHVER 182
++GG+T+F F RL++++ + SG +K+ ER
Sbjct: 290 VTGGTTLFPGFTERLEKELAQ---------LAPSGVKVKIIAP-------------PNER 327
Query: 183 RDESYIG 189
+ ++IG
Sbjct: 328 KYSAWIG 334
Score = 73.8 bits (182), Expect = 2e-14
Identities = 40/119 (33%), Positives = 50/119 (42%), Gaps = 33/119 (27%)
Query: 218 LEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------ 271
EIMFE+F VP LY+A QAVL+ AS ++ TG+VVDSG GVT V+PV
Sbjct: 113 TEIMFETFGVPALYLAKQAVLSAYASGRT--------TGLVVDSGAGVTSVVPVYEGYVL 164
Query: 272 -------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKY 311
LL R E + IKE Y+ D + A
Sbjct: 165 QKAIRRSDLAGDDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAAS 223
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 75.2 bits (185), Expect = 1e-14
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 33/114 (28%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
+IMFE+ NVP +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H +P+
Sbjct: 122 QIMFETHNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYSLP 173
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKE 307
+L ER E + IKE+ YI D +E
Sbjct: 174 HAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEE 227
Score = 65.6 bits (160), Expect = 1e-11
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 34/190 (17%)
Query: 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPT 61
++++ +L ER E + IKE+ YI D E A + P
Sbjct: 188 EYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALD-FDEEMGNSAGSSDKYEESYELP- 245
Query: 62 SWKKSPSDRPSIPFFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYH 119
D I ++ F+ LF S + I E+ I C ID+R+ LY
Sbjct: 246 -------DGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYG 298
Query: 120 NIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGH 179
NIVLSGG+TM+R RL +++ + S IKV
Sbjct: 299 NIVLSGGTTMYRGLPERLTKELT---------TLAPSTMKIKV--------------VAP 335
Query: 180 VERRDESYIG 189
ER+ +IG
Sbjct: 336 PERKYSVWIG 345
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 72.1 bits (177), Expect = 1e-13
Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 6/54 (11%)
Query: 218 LEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271
E++FE+ NVP LY+A+QAVL+L AS S TG+V+DSGD VTHVIPV
Sbjct: 126 TELLFETLNVPALYLAIQAVLSLYASGSS------DETGLVIDSGDSVTHVIPV 173
Score = 65.9 bits (161), Expect = 1e-11
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 97 PISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLS 152
+ E+V IQ C DVR+ LY NIVL+GG++ F RLQ+++ + + K+S
Sbjct: 342 GLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVS 397
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 66.3 bits (161), Expect = 9e-12
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 33/115 (28%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H +P+
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPIYEGYALP 173
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEF 308
+L ER E + IKE+ +Y+ D E
Sbjct: 174 HAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEM 228
Score = 53.9 bits (129), Expect = 7e-08
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
+++ +L ER E + IKE+ +Y+ D E S ++
Sbjct: 189 YMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAA------------SSSA 236
Query: 63 WKKSPS--DRPSIPFFTQNFQFKSFLFSFSNPDF----TTPISEIVDTVIQNCPIDVRRP 116
+KS D I + F+ LF P F + I E I C +D+R+
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEALF---QPSFLGMESAGIHETTYNSIMKCDVDIRKD 293
Query: 117 LYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKL 151
LY N+VLSGG+TMF R+ +++ + + +K+
Sbjct: 294 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKI 328
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 59.6 bits (144), Expect = 1e-09
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 8/53 (15%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271
E+ FE+FNVP L+I++QA+L+L + K+ G V+D GDGV H + +
Sbjct: 127 EVFFETFNVPALFISIQAILSLYSCGKT--------NGTVLDCGDGVCHCVSI 171
Score = 54.9 bits (132), Expect = 4e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 98 ISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVV--DARLKLS 152
+SE++ T I +D+RR LY +IVLSGG+TMF FG RL +I++ D +++S
Sbjct: 279 LSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRIS 335
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 54.8 bits (131), Expect = 4e-08
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 8/53 (15%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV 271
+IMFE+FN P LYI+ +AVL+L S K+ G+VVDSG+GVTH +PV
Sbjct: 121 QIMFETFNTPCLYISNEAVLSLYTSGKT--------IGLVVDSGEGVTHCVPV 165
Score = 45.9 bits (108), Expect = 3e-05
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 17 PEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRPSIPFF 76
P Q + K IKER Y D E Y ++ + SP P
Sbjct: 203 PHQRI-IVKNIKERLCYTALDPQDE-------------KRIYKESNSQDSPYKLPDGNIL 248
Query: 77 T---QNFQFKSFLFSFSNPDF----TTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTM 129
T Q F+ LF P I + + I+ C +D+R+ L NIVLSGG+T+
Sbjct: 249 TIKSQKFRCSEILF---QPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTL 305
Query: 130 FRDFGRRLQRDIKRVVDARLKL 151
F RL ++ +V ++LK+
Sbjct: 306 FPGIANRLSNELTNLVPSQLKI 327
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 52.2 bits (125), Expect = 6e-08
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 216 QDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPVSLLR 275
L + E + + AV A A E+ T +VVD G G T + V
Sbjct: 89 IPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEED---TVLVVDLGTGTTGIAIV---E 142
Query: 276 EREIGIPPEQSLETAKAIKE 295
+ + G+ L A+A+
Sbjct: 143 DGKGGVGAAGELGIAEALAA 162
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 35.1 bits (82), Expect = 0.059
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 97 PISEIVD---TVIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK---RVVD 146
P+ EIV+ +V++ P ++ + IVL+GG + R + + RV +
Sbjct: 246 PLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEETGLPVRVAE 302
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 32.6 bits (75), Expect = 0.28
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 120 NIVLSGGSTMFRDFG--RRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWY 177
N++LSGG DFG + R VD + L +L + E +
Sbjct: 125 NMILSGGKIYLIDFGLAEFSKDLEDRAVDLHV-LLRSLESTHPDWAE-----ELFEAFLE 178
Query: 178 GHVERRDESY--IGKRVERMEVRGRKGRGRPKK 208
G+ E E + +RV+ + +RGR R KK
Sbjct: 179 GYREVMGEKAEEVLERVKEIRLRGRYVEERRKK 211
>gnl|CDD|236504 PRK09418, PRK09418, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 780
Score = 32.8 bits (74), Expect = 0.51
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 310 KYVRNKVWKQPKLSRNDTLIFVPIL---LRSLPKQSLETAKAIKE--RYSYICPDIAKEF 364
KY++ P +N F PI+ L + S K IK+ SY+ P EF
Sbjct: 589 KYMQETPVIDPAADKNWA--FKPIVADKLNTTFDSSPNAQKYIKKDGNISYVGPS-ENEF 645
Query: 365 AKYDADPGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPT 419
AKY D K + P+ P T + +N T P G P+ PT
Sbjct: 646 AKYAIDITKKNDDDKETGGENPTTPPTGEGDNGENPTTPPTGEGNNGENPTTPPT 700
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.85
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 384 TRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGVPCWHPPPNSMRCA 443
RP AP +P+ P + P A P + P PPP R
Sbjct: 2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655
Query: 444 -IPRRHMRS 451
P R R
Sbjct: 2656 PAPGRVSRP 2664
>gnl|CDD|221758 pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This
domain probably functions as an integrase that is found
in a wide variety of transposases, including ISXO2.
Length = 151
Score = 30.7 bits (70), Expect = 0.93
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 178 GHVERRDESYIG-KRVERMEVRGRKGRGRPKKRW 210
G VE DE+Y+G +R + +G++GRG K
Sbjct: 4 GEVEV-DETYLGGRRNGKKRRKGKRGRGAEGKTP 36
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.5 bits (69), Expect = 2.4
Identities = 9/50 (18%), Positives = 11/50 (22%)
Query: 371 PGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTT 420
P R + P T P + P P S T
Sbjct: 383 PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 30.2 bits (68), Expect = 3.1
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 385 RPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGVPCWHPPP 437
AP+ P P G P PP + P C + S P P
Sbjct: 691 ALRAPQAP--RPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTA--PPEP 739
>gnl|CDD|232935 TIGR00354, polC, DNA polymerase, archaeal type II, large subunit.
This model represents the large subunit, DP2, of a two
subunit novel Archaeal replicative DNA polymerase first
characterized for Pyrococcus furiosus. Structure of DP2
appears to be organized as a ~950 residue component
separated from a ~300 residue component by a ~150
residue intein. The other subunit, DP1, has sequence
similarity to the eukaryotic DNA polymerase delta small
subunit [DNA metabolism, DNA replication, recombination,
and repair].
Length = 1095
Score = 29.9 bits (67), Expect = 3.3
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 29/163 (17%)
Query: 270 PVSLLREREIGIPPEQ----SLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRN 325
+S LR I E+ E + RY+Y+ D++ E +Y+RN + KL
Sbjct: 435 NLSYLRGDYRKISEEEALKLCDEFHVPLHPRYTYLWHDVSVEDYRYLRNWLSDNGKLEGK 494
Query: 326 DTLIFVPILLRSLPKQSLE----------TAKAIKERYSYI-CPDIAKEFAKYDAD---- 370
+ + S K+ LE + I+ ++I C + ++ +K
Sbjct: 495 HGKSDLLLPEDSRVKRILEALGLEHKVRESFVVIETWRAFIRCLGLDEKLSKVLEVSKDV 554
Query: 371 --------PGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGI 405
P K + S + R P + +K + PP I
Sbjct: 555 LEIVNGISPIKVRPKALSYIGARMGRPE--KAKERKMSPPPHI 595
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme MccE. This subfamily is composed
of uncharacterized proteins with similarity to
Escherichia coli MccE, a hypothetical protein that is
homologous to eukaryotic ornithine decarboxylase (ODC)
and diaminopimelate decarboxylase (DapDC). ODC and DapDC
are fold type III PLP-dependent enzymes that contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. ODC participates in the formation of
putrescine by catalyzing the decarboxylation of
ornithine, the first step in polyamine biosynthesis.
DapDC participates in the last step of lysine
biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Most members
of this subfamily share the same domain architecture as
ODC and DapDC. A few members, including Escherichia coli
MccE, contain an additional acetyltransferase domain at
the C-terminus.
Length = 379
Score = 29.5 bits (67), Expect = 3.5
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 75 FFTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFG 134
F + ++ + PD I T+ + +P ++L G + D G
Sbjct: 213 FPAKTPLSLAYPQEDTVPDPEDYAEAIASTLKEYYANKENKP---KLILEPGRALVDDAG 269
Query: 135 RRLQR--DIKRVVDAR 148
L R +K
Sbjct: 270 YLLGRVVAVKNRYGRN 285
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
calcium-activated cytoplasmic cysteine proteinases,
participate in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Catalytic domain and the two calmodulin-like domains are
separated by C2-like domain III. Domain III plays an
important role in calcium-induced activation of calpain
involving electrostatic interactions with subdomain II.
Proposed to mediate calpain's interaction with
phospholipids and translocation to cytoplasmic/nuclear
membranes. CD includes subdomain III of typical and
atypical calpains.
Length = 150
Score = 28.8 bits (65), Expect = 3.8
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 76 FTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMF--RDF 133
F N QF+ PD ++ ++Q +R+ L+ G ++
Sbjct: 28 FWTNPQFR---IRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDL--LTIGFHVYKVPGE 82
Query: 134 GRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQ 170
R L+RD K S +I EVS +F+
Sbjct: 83 NRHLRRDF-----FLHKAPRARSSTFINTREVSLRFR 114
>gnl|CDD|214355 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 29.6 bits (67), Expect = 3.8
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 231 YIAVQAVLALAASWKSRPIEERTLTGI-VVDSGDGVTHVIPVSLLREREIGI 281
YI Q A+W SR I+ + LTG V GD TH ++ + RE+GI
Sbjct: 280 YIDQQTRFVSQAAWFSRSIDCQNLTGKKAVVFGDA-THAASMTKILAREMGI 330
>gnl|CDD|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH
domains) [General function prediction only].
Length = 194
Score = 28.8 bits (65), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 247 RPIEERTLTGIVVDSGDGVTHVI-------PVSLLREREI------GIPPEQSL 287
+ IEE+T + +DS G + P++LL+ R++ G PPE++L
Sbjct: 31 KAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKAL 84
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 29.4 bits (66), Expect = 4.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 177 YGHVERRDESYIGKRVERMEVRGRKGRGRPKKRWKDCVNQ-------DLEIMFESFNVP 228
Y E R+ Y G+ E M ++GR+ G+ K + + D FES+ VP
Sbjct: 104 YEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 28.5 bits (64), Expect = 4.4
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 375 MRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRF 426
+ P+ S P + P EP P A T K R+
Sbjct: 65 AITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAE-NTVTVAKDPRY 115
>gnl|CDD|178173 PLN02559, PLN02559, chalcone--flavonone isomerase.
Length = 230
Score = 28.7 bits (64), Expect = 5.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 217 DLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERT 253
+++ F F G+Y+ AV +LA WK + EE
Sbjct: 38 EIQGKFIKFTAIGVYLEGNAVPSLAKKWKGKTAEELA 74
>gnl|CDD|220302 pfam09591, DUF2463, Protein of unknown function (DUF2463). This
protein is found in eukaryotic, parasitic microsporidia.
Its function is unknown.
Length = 210
Score = 28.5 bits (64), Expect = 5.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 211 KDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGI 257
KD + + F + +P Y AVQ +L L +WKS E L I
Sbjct: 11 KDRFEESPFLRFITLLLPFSYSAVQYLLLLHTNWKSHHKPEGILHKI 57
>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase.
Chalcone-flavanone isomerase is a plant enzyme
responsible for the isomerisation of chalcone to
naringenin, a key step in the biosynthesis of
flavonoids.
Length = 200
Score = 28.7 bits (65), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 217 DLEIMFESFNVP--GLYIAVQAVLALAASWKSRPIEE 251
+ + + V G+Y+A V +LA+ WK + EE
Sbjct: 23 GVSFLGKFIKVYAIGVYLAKSDVPSLASKWKGKSAEE 59
>gnl|CDD|169983 PRK09579, PRK09579, multidrug efflux protein; Reviewed.
Length = 1017
Score = 29.0 bits (65), Expect = 5.9
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 218 LEIMFESFNVPGLYIAVQ-------AVLALAASWKSRPIEER----TLTGIVVDSGDGVT 266
L FESF P L I V A++ L S I + TL G++ S G+
Sbjct: 861 LAAQFESFRDP-LVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLI--SKHGIL 917
Query: 267 HVIPVSLLREREIGIPPEQSLETAKAIKER 296
V + LR E G+ +++E A AI+ R
Sbjct: 918 IVEFANQLRH-EQGLSRREAIEEAAAIRLR 946
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 28.9 bits (66), Expect = 5.9
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 95 TTPISEIVDT---VIQNCPIDVRRPLYHN-IVLSGGSTMFRDFGRRLQRDIK 142
P+ +IV+ V++ P ++ + IVL+GG + R + L +
Sbjct: 254 AEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG 305
>gnl|CDD|165469 PHA03202, PHA03202, uracil DNA glycosylase; Provisional.
Length = 313
Score = 28.9 bits (64), Expect = 5.9
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 389 PRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGVPCWHPPPNSMRCAIPR 446
P T E + ++ P E G PAC S P C+ +G P PP C +P+
Sbjct: 17 PETKPEENGQRSSTPTSEAGQPACVVS--PAPCE-----TGAP---PPKRRRPCGLPQ 64
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 28.8 bits (65), Expect = 6.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 22 ETAKAIKERYSYICPDIA--KEFAKYDADPG 50
ET + +KE+ ++ P +A + A A PG
Sbjct: 206 ETIELMKEKGIFLVPTLATYEALAAEGAAPG 236
Score = 28.8 bits (65), Expect = 6.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 344 ETAKAIKERYSYICPDIA--KEFAKYDADPG 372
ET + +KE+ ++ P +A + A A PG
Sbjct: 206 ETIELMKEKGIFLVPTLATYEALAAEGAAPG 236
>gnl|CDD|224501 COG1585, COG1585, Membrane protein implicated in regulation of
membrane protease activity [Posttranslational
modification, protein turnover, chaperones /
Intracellular trafficking and secretion].
Length = 140
Score = 27.7 bits (62), Expect = 6.6
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 165 VSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGRGRPK---KRWKDCVNQDLEI 220
+ R+F RRL + +R E +G+R +E GRGR K + W+ ++DL
Sbjct: 64 LGRRFVRRRLKPSDGLNQRGEQLVGRRGVVVEDIVE-GRGRVKVEGESWRARSDEDLPA 121
>gnl|CDD|218053 pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the
D6R/N1R proteins defines a novel, conserved DNA-binding
domain (the KilA-N domain) that is found in a wide range
of proteins of large bacterial and eukaryotic DNA
viruses. The KilA-N domain family also includes the
previously defined APSES domain. The KilA-N and APSES
domains may also share a common fold with the nucleic
acid-binding modules of the LAGLIDADG nucleases and the
amino-terminal domains of the tRNA endonuclease.
Length = 106
Score = 27.3 bits (61), Expect = 7.0
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 276 EREIGIPPEQSLETAKAIKERYS--YICPDIAKEFAKYV 312
+ +E K R Y+ PD+A A ++
Sbjct: 50 SKINNPDKLIVIEGRKGKNGRLQGTYVHPDLALAIASWI 88
Score = 26.9 bits (60), Expect = 9.9
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 10 EREIGIPPEQSLETAKAIKERYS--YICPDIAKEFAKY 45
+ +E K R Y+ PD+A A +
Sbjct: 50 SKINNPDKLIVIEGRKGKNGRLQGTYVHPDLALAIASW 87
>gnl|CDD|233339 TIGR01278, DPOR_BchB, light-independent protochlorophyllide
reductase, B subunit. Alternate name: dark
protochlorophyllide reductase This enzyme describes the
B subunit of the dark form protochlorophyllide
reductase, a nitrogenase-like enzyme. This subunit shows
homology to the nitrogenase molybdenum-iron protein. It
catalyzes a step in bacteriochlorophyll biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 511
Score = 28.6 bits (64), Expect = 7.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 241 AASWKSRPIEERTLTGI-VVDSGDGVTHVIPVSLLREREIGIP 282
A+W +R I+ ++LTG GD TH + ++ + RE+GI
Sbjct: 280 QAAWFARSIDSQSLTGKRAFVFGDA-THAVGMTKILARELGIH 321
>gnl|CDD|233685 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit. This
model describes orthologs of the beta subunit of
Bacterial RNA polymerase. The core enzyme consists of
two alpha chains, one beta chain, and one beta' subunit
[Transcription, DNA-dependent RNA polymerase].
Length = 1065
Score = 28.9 bits (65), Expect = 7.5
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 309 AKYVRNKVWKQPKLSRNDTLIFVPILLRSLPKQSLETAKAIKER 352
+Y+ N + K P SR++ L+ + +LR ++E A+++ E
Sbjct: 220 YEYISNTLRKDPTNSRDEALLEIYRVLRPGEPPTVEAARSLLEN 263
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 28.4 bits (63), Expect = 8.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 56 LFYSPTSWKKS---PSDRPSIPFFTQN 79
+P S+K S PSD PSIP FT N
Sbjct: 296 FLPTPMSYKPSISLPSDNPSIPSFTVN 322
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein.
Length = 94
Score = 27.0 bits (59), Expect = 8.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 386 PSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIP 418
P P P+ P PP P P +P+V P
Sbjct: 7 PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKP 39
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 28.3 bits (63), Expect = 9.4
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 378 SYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGVPCWHPPP 437
S S P P +TPP I AC + P TC + +G P P
Sbjct: 20 SSSNRHHHHHTPSPSPPPPSSPSTPPQILL---ACNATRFPDTCVSSLSNAGRVPPDPKP 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,817,231
Number of extensions: 2457073
Number of successful extensions: 2833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2805
Number of HSP's successfully gapped: 62
Length of query: 465
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 365
Effective length of database: 6,502,202
Effective search space: 2373303730
Effective search space used: 2373303730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)