RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6341
(465 letters)
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 146 bits (369), Expect = 2e-39
Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 13/180 (7%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
++ SLLR+R P+ SL+TA+ IKE Y+CPDI KEF+++D +P ++++ S T
Sbjct: 219 FVQSLLRDRN---EPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITG 275
Query: 63 WKKSPSDRPSIPFFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHN 120
+I + F F ++ DF TP+ E+VD V+Q+ PIDVR+ LY N
Sbjct: 276 ------HSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKN 329
Query: 121 IVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLH--WYG 178
IVLSGGST+F++FG RLQRD+KR+VD R+ SE LSG +V+ R+ + W+G
Sbjct: 330 IVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFG 389
Score = 123 bits (311), Expect = 3e-31
Identities = 64/121 (52%), Positives = 76/121 (62%), Gaps = 28/121 (23%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
EIMFESFN GLYIAVQAVLALAASW S + +R+LTG VVDSGDGVTH+IPV
Sbjct: 144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIG 203
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR 313
SLLR+R P+ SL+TA+ IKE Y+CPDI KEF+++ R
Sbjct: 204 SSIKTMPLAGRDVTYFVQSLLRDRN---EPDSSLKTAERIKEECCYVCPDIVKEFSRFDR 260
Query: 314 N 314
Sbjct: 261 E 261
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 145 bits (369), Expect = 2e-39
Identities = 104/168 (61%), Positives = 121/168 (72%), Gaps = 6/168 (3%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
+I LLR+RE+GIPPEQSLETAKA+KERYSY+CPD+ KEF KYD D KW++ + +
Sbjct: 203 FIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQ-YTGINA 261
Query: 63 WKKSPSDRPSIPFFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHN 120
SI + F F F+NPDFT PISE+VD VIQNCPIDVRRPLY N
Sbjct: 262 ---ISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKN 318
Query: 121 IVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRK 168
IVLSGGSTMFRDFGRRLQRD+KR VDARLKLSE LSGG +K + +
Sbjct: 319 IVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQ 366
Score = 140 bits (354), Expect = 3e-37
Identities = 79/121 (65%), Positives = 87/121 (71%), Gaps = 25/121 (20%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
EIMFESFNVPGLYIAVQAVLALAASW SR + ERTLTG V+DSGDGVTHVIPV
Sbjct: 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIG 187
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR 313
LLR+RE+GIPPEQSLETAKA+KERYSY+CPD+ KEF KY
Sbjct: 188 SCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDT 247
Query: 314 N 314
+
Sbjct: 248 D 248
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 119 bits (301), Expect = 5e-30
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
+++ LL R ET + IKE+ Y+ +I +E K + + + + P
Sbjct: 192 YLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ-KLALETTVLVES-YTLP-- 247
Query: 63 WKKSPSDRPSIPFFTQNFQFKSFLFSFSNPDF----TTPISEIVDTVIQNCPIDVRRPLY 118
D I + F+ LF P ++E++ IQ ID R Y
Sbjct: 248 ------DGRIIKVGGERFEAPEALF---QPHLINVEGVGVAELLFNTIQAADIDTRSEFY 298
Query: 119 HNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVS---RKF 169
+IVLSGGSTM+ RL+R++K++ R+ + K+ RK
Sbjct: 299 KHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKH 352
Score = 112 bits (281), Expect = 2e-27
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 33/127 (25%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
E+MFE++ G+Y+A+QAVL L A LTG+VVDSGDGVTH+ PV
Sbjct: 125 EVMFETYQFSGVYVAIQAVLTLYAQGL--------LTGVVVDSGDGVTHICPVYEGFSLP 176
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR 313
LL R ET + IKE+ Y+ +I +E +
Sbjct: 177 HLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALE 236
Query: 314 NKVWKQP 320
V +
Sbjct: 237 TTVLVES 243
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 118 bits (297), Expect = 1e-29
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 3 WILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTS 62
+++ +L ER E + IKE+ Y+ D E A + S
Sbjct: 188 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE--------KS 239
Query: 63 WKKSPSDRPSIPFFTQNFQFKSFLFSFSNPDF----TTPISEIVDTVIQNCPIDVRRPLY 118
++ D I + F+ LF P F + I E I C ID+R+ LY
Sbjct: 240 YELP--DGQVITIGNERFRCPETLF---QPSFIGMESAGIHETTYNSIMKCDIDIRKDLY 294
Query: 119 HNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKL 151
N V+SGG+TM+ R+Q++I + + +K+
Sbjct: 295 ANNVMSGGTTMYPGIADRMQKEITALAPSTMKI 327
Score = 112 bits (282), Expect = 1e-27
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 33/127 (25%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPV------- 271
+IMFE+FNVP +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH +P+
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHNVPIYEGYALP 172
Query: 272 ------------------SLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVR 313
+L ER E + IKE+ Y+ D E A
Sbjct: 173 HAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAAS 232
Query: 314 NKVWKQP 320
+ ++
Sbjct: 233 SSSLEKS 239
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 80.0 bits (197), Expect = 2e-16
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 28/160 (17%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPVSLLRERE 278
E++ E Y+A + A+ + +VVD G V P+
Sbjct: 135 EVLLEGMQFEACYLAPTSTCVSFAAGRP--------NCLVVDIGHDTCSVSPIV----DG 182
Query: 279 IGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVRNK-------VWKQPKLSRNDTLIFV 331
+ + K+ + R I K + K + ++ T +
Sbjct: 183 MTLS--------KSTR-RNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYE 233
Query: 332 PILLRSLPKQSLETAKAIKERYSYICPDIAKEFAKYDADP 371
+ + KE +ICP E K +
Sbjct: 234 VDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSS 273
Score = 70.8 bits (173), Expect = 3e-13
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%)
Query: 16 PPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPS-DRPSIP 74
P + K + Y + K D + KS S S
Sbjct: 313 WPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEK---EQEAVSKSTSPAANSAD 369
Query: 75 FFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRD 132
+ + N + ++++V + I + +D+R L HN+VL+GG++
Sbjct: 370 TPNETGKRPLEEEKPPKENNELI-GLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPG 428
Query: 133 FGRRLQRDIKRVV 145
RL ++ +++
Sbjct: 429 LSDRLMTELNKIL 441
Score = 30.7 bits (69), Expect = 1.1
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 16 PPEQSLETAKAIKERYSYICPDIAKEFAKYDADP 49
+ + KE +ICP E K +
Sbjct: 240 DYANNRGFFQECKETLCHICPTKTLEETKTELSS 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 58/437 (13%), Positives = 120/437 (27%), Gaps = 104/437 (23%)
Query: 28 KERYSY--ICPDIAKEFAK-YDA-DPGKWMRNLFYSPTSWK---KSPSD--RPSIPFFT- 77
+ +Y Y I F +D D +++ S S F+T
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 78 ---QNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFG 134
Q + F+ ++ +S I Q + + L + +F
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAK-- 128
Query: 135 RRLQRDIKRVVDARLKLSETLSGGYI---------K---VTEVSR--KFQGR---RLHW- 176
+ R ++ + R L E + K +V K Q + ++ W
Sbjct: 129 YNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 177 -YGHVERRDESYIGK------RVERMEVRGRKGRGRPKKRWKDCVNQDLEIMFESFNVPG 229
+ E+ + +++ K R + ++
Sbjct: 188 NLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----- 241
Query: 230 LYIAVQAVLALAASWKSRPIEE-----RTL--T--GIVVD--SGDGVTHVIPVSLLRERE 278
Y +L L ++ + L T V D S TH+ L
Sbjct: 242 PY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----LDHHS 295
Query: 279 IGIPPEQSLET-AKAIKERYSYICPDIAKE-----------FAKYVRNKV-----WKQPK 321
+ + P++ K + R D+ +E A+ +R+ + WK
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 322 LSRNDTLI--FV----PILLRSL-------PKQSLETAKAIK----ERYSYICPDIAKEF 364
+ T+I + P R + P + + + + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 365 AKYDADPGKWMRNSYSI 381
KY + ++ SI
Sbjct: 412 HKYSLVEKQPKESTISI 428
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 72/411 (17%), Positives = 121/411 (29%), Gaps = 153/411 (37%)
Query: 53 MRNLF--YSP-------------TSWKKSPSDRPSIPFFTQNFQFKSFLFSFSNPDFTTP 97
+R+L+ Y + ++ D FTQ +L NP TP
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE--KVFTQGLNILEWL---ENPS-NTP 226
Query: 98 ISEIVDTVIQNCPIDVRRPL--------YHNIVLSGGSTM--FRDFGRRLQRDIKRVVDA 147
+ + + PI PL Y G T R + + + +V A
Sbjct: 227 DKDYLLS----IPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 148 RLKLSETLSGG--YIKVTEVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGRGR 205
++ET S + RK + +IG VR +
Sbjct: 281 VA-IAETDSWESFF----VSVRKA----ITVL--------FFIG-------VRCYEAYPN 316
Query: 206 ---PKKRWKDCVNQDLEI---MFESFNVPGLYIA-VQAVLALAASWKSRPIEER---TL- 254
P +D + + + M ++ L VQ + P ++ +L
Sbjct: 317 TSLPPSILEDSLENNEGVPSPM---LSISNLTQEQVQDYVNKTN--SHLPAGKQVEISLV 371
Query: 255 ---TGIVVDSGDGVTHVIPVSL----LREREIGIPPEQSLETAKAIKERYSYICPDIAKE 307
+VV SG P SL L R+ P L+ ++
Sbjct: 372 NGAKNLVV-SGP------PQSLYGLNLTLRKAKAPSG--LDQSRI--------------P 408
Query: 308 FAKYVRNKVWKQPKLSRNDTLIFVPILLRSLPKQS--LETAKAIKERYSYICPDIAK--- 362
F++ ++ K S F+P+ + P S L A + I D+ K
Sbjct: 409 FSE-------RKLKFSNR----FLPV---ASPFHSHLLVPASDL------INKDLVKNNV 448
Query: 363 EFAK-------YDADPGKWMRN-SYSIV------LTR-----PSAPRTPST 394
F YD G +R S SI + R + + +T
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Score = 34.3 bits (78), Expect = 0.10
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 25/115 (21%)
Query: 294 KERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFVPI-LLRSLPKQ-----SLETAK 347
+ Y A++ VW + DT F + ++ + P E K
Sbjct: 1633 MDLYKT--SKAAQD--------VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 348 AIKERYSYI----CPDIAKEFAKYDADPGKWMRNSYSIVLTRPSAP--RTPSTEP 396
I+E YS + D + K + +S S T T+P
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEIN---EHSTSYTFRSEKGLLSATQFTQP 1734
Score = 28.9 bits (64), Expect = 4.7
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 18/83 (21%)
Query: 4 ILSLLREREIGIPPEQSL----ETAKAIKERYSYI----CPDIAKEFAKYDADPGKWMRN 55
IL ++ P ++ E K I+E YS + D + K + + +
Sbjct: 1661 ILDIVINN----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 56 LFYSPTSWKKSPSDRPSIPFFTQ 78
+ S S FTQ
Sbjct: 1717 YTFR------SEKGLLSATQFTQ 1733
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 33.7 bits (78), Expect = 0.100
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 97 PISEIVDTVIQNCPIDVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVV 145
++ IV VI+N + + + GG+ F R + + V
Sbjct: 212 KMALIVKEVIKNYDQTLP------VYVVGGTAYLTGFSEEFSRFLGKEV 254
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium; 1.77A {Sinorhizobium meliloti}
Length = 269
Score = 31.4 bits (71), Expect = 0.55
Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 266 THVIPVSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRN 325
T + + + ++E + ++ + P + + + + VW++P L+R
Sbjct: 15 TENLYFQSMMTTSNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRR 74
Query: 326 D-TLIFVPIL 334
D +L+ + L
Sbjct: 75 DRSLVTIAAL 84
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.8 bits (69), Expect = 0.83
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 371 PGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGV 430
+ M + +A T S PPG PP P G
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPG------MMGP 191
Query: 431 PCWHPPPNSMRCAIP 445
P PP IP
Sbjct: 192 PPGMRPPMGPPMGIP 206
Score = 28.1 bits (62), Expect = 5.3
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 385 RPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIPTTCKGTRFGSGVPCWHPPPNSM 440
P P + PPG+ PP +P G G G P PPP
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP--MGPPMGIPPGRGTPMGMPPPGMR 221
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 30.3 bits (69), Expect = 0.95
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 231 YIAVQAVLALAASWKSRPIEERTLTG--IVVDSGDGVTHVIPV 271
+A + + + + SRP G + ++ VT +
Sbjct: 215 EVA-EKLFEWSTNSDSRPT-----NGSLVKFETKSKVTTWTNL 251
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 29.3 bits (65), Expect = 1.2
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 289 TAKAIKERYSYICPDIAK-----EFAKYVR---NKVWKQPKLSRNDTLIFVPILLRSLPK 340
TA I + YS + D+A+ E + +R +K + KL +N L + K
Sbjct: 3 TAIGINDTYSEVKSDLAQQKAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGGGK 62
Query: 341 QSLETAKAIKERYSYICPDIAKEFAKYDAD 370
+ + + + + +I F KYD D
Sbjct: 63 LNFDELRQDLKGKGHTDAEIEAIFTKYDQD 92
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET:
NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A*
1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Length = 222
Score = 29.7 bits (66), Expect = 1.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 DLEIMFESFNV--PGLYIAVQAVLALAASWKSRPIEE 251
L I G+Y+ AV +LAA WK + EE
Sbjct: 37 GLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEE 73
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like
protein, chalcone-isomerase like FOL isomerase; 1.70A
{Arabidopsis thaliana}
Length = 208
Score = 29.6 bits (66), Expect = 1.6
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 217 DLEIMFESFNV--PGLYIAVQAVLALAASWKSRPIEE 251
D+EI F G+Y+ V +WK + +E
Sbjct: 31 DIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKE 67
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase;
1.55A {Arabidopsis thaliana}
Length = 246
Score = 28.6 bits (63), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 217 DLEIMFESFNV--PGLYIAVQAVLALAASWKSRPIEE 251
L+I + G+Y+ AV +L+ WK + EE
Sbjct: 48 GLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEE 84
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 28.5 bits (64), Expect = 5.2
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 15/50 (30%)
Query: 63 WKKSPSDRPSIPFFTQ------------NFQFKSFLFSFSNPDFTTPISE 100
W PS RP+ F Q + Q + + D+ P +E
Sbjct: 330 WHAVPSQRPT---FKQLVEDLDRIVALTSNQEMGYYHHHHHHDYDIPTTE 376
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 28.3 bits (63), Expect = 6.0
Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 42/165 (25%)
Query: 237 VLALAASWKSRPIEERTLTGIVVDSGDGVTHVIPVSLLRE------REIGIPPEQ----- 285
A ++R EE +V+D G T + LLR R + + +
Sbjct: 174 PFAGLYPLEARLAEEPDRVFLVLDIGAESTS---LVLLRGDKPLAVRVLTLSGKDFTEAI 230
Query: 286 ------SLETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFVPILLRSLP 339
L A+ +K Y E + L+
Sbjct: 231 ARSFNLDLLAAEEVKRTYGMATLPTEDE------------------ELLLDFDAERERYS 272
Query: 340 KQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLT 384
+ AI+ + ++ + + + + L
Sbjct: 273 PGRI--YDAIRPVLVELTQELRRSLEFFRIQLEE--ASPEVGYLL 313
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A
2qke_A 1vgl_A
Length = 105
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 316 VWKQPKLSRNDTLIFVPILLRSLP 339
V K P+L+ D ++ P L + LP
Sbjct: 47 VLKNPQLAEEDKILATPTLAKILP 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.8
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 340 KQSLETAKAIKERYSYICPDIAKEFA 365
KQ+L+ +A + Y+ D A A
Sbjct: 19 KQALKKLQASLKLYA---DDSAPALA 41
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 27.9 bits (63), Expect = 7.0
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 6/22 (27%)
Query: 256 GIVVDSGDGVT------HVIPV 271
GIV G+GVT VIP+
Sbjct: 71 GIVESIGEGVTTVRPGDKVIPL 92
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.0 bits (63), Expect = 7.2
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 256 GIVVDSGDGVT------HVIPV 271
GIV G GVT VIP+
Sbjct: 72 GIVESVGPGVTEFQPGEKVIPL 93
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase,
lyase; 2.20A {Halothiobacillus neapolitanus}
Length = 542
Score = 28.1 bits (62), Expect = 7.2
Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 359 DIAKEFAKYDADPGKWMRNSYSIVLTRPSAPRTPSTEPKKNTTPPGIEPGPPACKPSVIP 418
DI Y M + R + S +P+ + P +
Sbjct: 13 DIPTTENLYFQGAMGSMNTRNTRSKQRAPCGVSSSVKPRLDLIEQAPNPVYDRHPACIT- 71
Query: 419 TTCKGTRFGSGVPCWHP 435
C HP
Sbjct: 72 --------LPERTCRHP 80
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics,
unknown function; 1.54A {Thermotoga maritima} SCOP:
d.58.5.2
Length = 113
Score = 26.7 bits (59), Expect = 7.4
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNSYSIVLTRPSAP 389
+ ++ ++ E + +++ + Y P I + + W+R S
Sbjct: 53 WAAIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENVLTEYMNWLRES-----VLEGGS 107
Query: 390 RT 391
Sbjct: 108 HH 109
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 28.0 bits (63), Expect = 7.7
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 256 GIVVDSGDGVT------HVIPV 271
G+V G GVT VIP+
Sbjct: 72 GVVESIGAGVTCVKPGDKVIPL 93
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 27.9 bits (63), Expect = 7.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 68 SDRPSIPFFTQNFQFKSFLFSFSN 91
RP + T +S FS +
Sbjct: 82 KGRPDLYTSTLITDGQSLTFSTDS 105
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 28.0 bits (63), Expect = 8.1
Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 6/22 (27%)
Query: 256 GIVVDSGDGVT------HVIPV 271
GIV G GVT VIP
Sbjct: 71 GIVESVGPGVTNFKPGDKVIPF 92
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 27.9 bits (63), Expect = 8.6
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 6/22 (27%)
Query: 256 GIVVDSGDGVT------HVIPV 271
GIV G+GVT VIP+
Sbjct: 70 GIVESVGEGVTKLKAGDTVIPL 91
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 27.5 bits (62), Expect = 9.3
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 93 DFTTPIS-----EIVDTVIQNCPIDVRRPLY---------HNIVLSGGST-------MFR 131
DF T I+ E+ + + V + L IVL GGST + +
Sbjct: 313 DFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQ 372
Query: 132 DF--GRRLQRDI 141
DF G+ L + I
Sbjct: 373 DFFNGKELNKSI 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,560,523
Number of extensions: 469866
Number of successful extensions: 1400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 55
Length of query: 465
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 368
Effective length of database: 3,993,456
Effective search space: 1469591808
Effective search space used: 1469591808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)